BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (282 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA
Sbjct: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP
Sbjct: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA
Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL
Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK
Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282


>gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 300

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 222/286 (77%), Positives = 251/286 (87%), Gaps = 4/286 (1%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHT 56
           M L+   K+ KI S KDSHYAKLRRN+RD KK+Q  NQK    ++H +Q  NLFLYG+HT
Sbjct: 15  MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL
Sbjct: 75  VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL
Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S  PLE+EIK+DKIALILGAE
Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK
Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300


>gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 265

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 2/257 (0%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            + R  K +++  Q   +  +     + G+     ALN+    +  L+ + + L R    
Sbjct: 6   PSKRQIKMIRALAQLKNYRKRHGLFLVEGLRATEEALNSDY-LVEFLVVSDDFLERHREK 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   V  VP +  D +   EA   G+                ++ L++ LD + DP
Sbjct: 65  IKEYENIKVYEVPRKVYDTLSDTEAPQ-GIMAVVRMKNHELTSIYEDNFLIVALDGIKDP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG I+R+A A    GI+  K      +  + +S  G++ H+P I   +L   L ++  
Sbjct: 124 GNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQ 183

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + +     ++K          + L+ G+E +G+ P+  + +T +  + MPG  ++LN
Sbjct: 184 KRAKIVVTHLGAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLN 243

Query: 265 VSNAAAVALYITQNHFA 281
           V+ A  + L+       
Sbjct: 244 VAVAGGIVLFEAVRQRN 260


>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 267

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 23/281 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+  ++  I  +K                     ++ ++  + +  F+ G+  V  A
Sbjct: 1   MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    +    L++ K A     ++         +PV  +P +   +I   +   QG+   
Sbjct: 42  LKEGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILAV 100

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +       D        ++LD V DP N+G I+R+A A    G+I +K      +  + 
Sbjct: 101 LSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVL 160

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++ HIP  +  ++ + + +M   G +      +           + IA+++G E 
Sbjct: 161 RSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEA 220

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G+  + +  A  +  + MPG  ++LN S AA + +Y    
Sbjct: 221 NGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261


>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
          Length = 267

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 113/281 (40%), Gaps = 23/281 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+  ++  I  +K                     ++ ++  + +  F+ G+  V  A
Sbjct: 1   MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    +    L++ K A     ++         +PV  +P +   +I   +   QG+   
Sbjct: 42  LKEGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILAV 100

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +       D        ++LD V DP N+G I+R+A A    G+I +K      +  + 
Sbjct: 101 LSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVL 160

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++ HIP  +  ++ + + +M   G +      +           + IA+++G E 
Sbjct: 161 RSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEA 220

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G+  + +  A  +  + MPG  ++LN S AA + +Y    
Sbjct: 221 NGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261


>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 102/256 (39%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +     K++   +       GV         P   + +   +++   +   + 
Sbjct: 6   SNKQIKNLVQLLTKAKARREQGLFVAEGVRMYRE---TPKDDLVKTYVSESFYEKE-ENR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++ V  +        +     L L      +P       + LL++L+ + DP 
Sbjct: 62  ALLQGTELEIVTDRVFASTSDTKTPQGILCLVRQREYTPAQMLRAENPLLLLLEDIQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I R+A A    GII +   +   +    +S  G++  +P++   ++    +K+ + 
Sbjct: 122 NLGTIFRAAEAAGATGIIMSSGTADIYNPKTIRSTMGSIYRMPFLYTKDIAAMQEKLKAR 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +T            ++      A ++G EG+GL     E A +   + M G +++LN 
Sbjct: 182 GIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLNA 241

Query: 266 SNAAAVALYITQNHFA 281
           + +AA+ ++  +   +
Sbjct: 242 AVSAAILMFEAKRQRS 257


>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
 gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
          Length = 270

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 4/260 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LAR 80
             N++  KK+ S  QK ++  +     + G+  V  A  +  R        K A     +
Sbjct: 7   SSNNQVIKKVASLKQK-KYRDEYNLFVVEGIRLVEEAAGSTWRPAMCFYTEKAAAAPRVQ 65

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              +        +  V      KI   E     L +      +       + +L++VLD+
Sbjct: 66  ATLEILAAKGCRIFPVADNVYAKITDTEQPQGILCVMEKKRYTFDDLQSSDRELIVVLDN 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G ++R+A A  C G+I TK  +   S    ++  G+L H+P I      +   
Sbjct: 126 VQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLFHLPVITGVAEQEVAA 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G + +  + DS            +A++ G EG G+     E A    ++ + G  
Sbjct: 186 FLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSKVILEKADERLYIPLYGRA 245

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAAV LY  +   
Sbjct: 246 ESLNVAVAAAVILYEARRQR 265


>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
 gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
          Length = 263

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 102/260 (39%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82
           ++   K++ +  +K +   +     + G+         P  K+ ++  +++   +     
Sbjct: 6   SNARIKRLVNLKKKRKLRDEESVFLVEGIRMFREV---PLDKLKEVYVSESFYKKEKDTV 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +        V+ +           +     L +                 L+MVLDH+ 
Sbjct: 63  KEVLKDSKVRVEELTDTVFAHASDTKTPQGILCVVEQMNHEINELTSAKCPLIMVLDHLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A      GI+  +      +    +S  G++  +P++ + +L   +Q +
Sbjct: 123 DPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVEDLGKGIQDL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G  T     +     ++E   +  A ++G EG GLR +  + A     + M G +++
Sbjct: 183 KDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVKIPMLGQVES 242

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + A++V ++       K
Sbjct: 243 LNAAIASSVLMFEAARQRRK 262


>gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 266

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 15/264 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDA 85
            YKK  +   K+          + G + V  AL + +  I Q+   +  +     +    
Sbjct: 4   KYKKSTNLTDKTEFR----EDLIEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAK 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138
                  VK V  + +DKI  +   HQG+  +  P     ++ +       + +  ++VL
Sbjct: 60  AKEKHIVVKQVDRKKLDKIS-QTGAHQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN GAI+R+A      GII  KR +   + V+ KS+ GA E++   +++NL   
Sbjct: 119 DEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTT 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++K+   G    G     +            ALI+G+EG+G+   T+E    +  + M G
Sbjct: 179 IEKLKKDGIWVYGADMSGENYCFDVDFKGPAALIIGSEGRGIAKLTKEKCDVLVKIPMVG 238

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            + +LN S A  + +Y       K
Sbjct: 239 RVSSLNASVAGGILMYEILKQRIK 262


>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 310

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 8/265 (3%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +D+HYA LRR HRD K+    N        PE L LYG+HTV+AAL NP R   +LL T+
Sbjct: 50  RDTHYANLRRAHRDRKRELKPN-------APEPLLLYGLHTVAAALQNPDRIRHRLLITR 102

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           NA ARL+ D +     P++ V P+ +D+++G EAVHQG  LET PL    LDA+ ++ LL
Sbjct: 103 NARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDATLL 161

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+  I + NL
Sbjct: 162 LVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVRNL 221

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L+++   GF+TIGL S+ +   EQ I+ +KIA++LGAEGKGLR KT+ T   +A L 
Sbjct: 222 AETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLARLE 281

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG I +LNVSNAAAVALY  +   
Sbjct: 282 MPGAIHSLNVSNAAAVALYAIRRRL 306


>gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     + G H V  A
Sbjct: 1   MKRIESVKNPQVKQWKKLLMK-------------------KERDKTGLFLIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +    I QL+  +N      WD +     PV  V    +  I   E   QG+A     
Sbjct: 42  LKSNI-SIIQLIVKENKAIPATWDIS---GIPVAIVTEDVMKAISDTE-TPQGIAAVCEQ 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L   +D  R + LL+  D V DP NIG ++R+A A   D +I  K  +   +  + ++ 
Sbjct: 97  FLYGDIDWTRANVLLI--DAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRAT 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P IR +   + ++K+        G S ++ +           AL++G EG G+
Sbjct: 155 QGSLFHLPIIRGNLR-EWIEKLQEQNVPIYGTSLENGEDYRCINPPRPFALLVGNEGSGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +  T   ++ + G  ++LNV+ AA + LY  +
Sbjct: 214 HKELLQMTTKNLYIPIYGQAESLNVAVAAGILLYHLR 250


>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
 gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
          Length = 257

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 104/255 (40%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    +KS+  ++ +   + G+         P  ++ ++  +++   +   + 
Sbjct: 6   SNPQVKNLLQLQKKSKVRNEEQVFIVEGLRMFMEV---PQDQVKKVYVSESLYNKKKEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +L   FPV+ +  +    +   +     L +             + +   +VLD++ DP 
Sbjct: 63  HLER-FPVEVLADKVFQHVSDTKTPQGILCVVKQRKYEIEDLISKENPHFIVLDNLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A       +  +       +    +S  G++  +P++ + +L   L K    
Sbjct: 122 NLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDDLLALLDKFQKK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T       K   ++E      A+++G EG GLR +  E A     + M G +++LN 
Sbjct: 182 KVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQIPMQGKVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + AA++ ++      
Sbjct: 242 AIAASILMFEVYRQR 256


>gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 270

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 94/258 (36%), Gaps = 4/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   +K++  + +S+   +     + G H +  AL               A      
Sbjct: 8   SPKNPWIRKLRQLH-RSKGRREQGAFLVEGSHLIEEALRVGWPLQALCYTPDWASRHPHL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A+LP     + V  + +  +   E+    +A+  +  +S     +   +L +V++ + D
Sbjct: 67  LADLPKGLRRQPVSSEVMAALCTTESPEGAVAVAVSWQISSP--PLSKLRLGLVVETLQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKM 202
           P N+G+++R   A   DG+  +      E+  + ++++G     P   + +         
Sbjct: 125 PGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVVPDLAAWIQSCR 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S +      +        +LG EG GLR  T + A +   + M   +++
Sbjct: 185 CHGIQVLAATLSPTANCYWDQDLTRPTLFLLGNEGAGLREATIQQADAQVRIPMAEGVES 244

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+    + LY      
Sbjct: 245 LNVAMTGGLLLYEALRQR 262


>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
          Length = 261

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 2/257 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K      QK ++  Q       G+ TV  A+   + +     A ++   R   + 
Sbjct: 7   QNPMVKAAAELKQK-KYRQQQGLFLAEGLRTVEEAVRYGAVQSIFYTAIEDDRTRAVLEE 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V  + + KI   E   QG+            + + + ++L+VLD V DP 
Sbjct: 66  AAAKQIKLVCVSDKVLKKIADTE-TPQGIIAVCEMRSKRLDEFLASGKMLLVLDRVTDPG 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG +LR+A A    G++  +  +   +    +++ G+L H+P +   +    +Q     
Sbjct: 125 NIGTMLRTADAAGVGGLLLLQGCADIYAPKTVRASMGSLFHLPVLSGLSEELLVQAARKA 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++ +    D    L +     ++A ++G E  G+ P     A     + M G  ++LNV
Sbjct: 185 GYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNV 244

Query: 266 SNAAAVALYITQNHFAK 282
           + AA + ++       K
Sbjct: 245 AMAAGIVMFEALRQKLK 261


>gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 252

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101
           ++     + G + V  AL + S     L+++  +   ++           PVK V  + +
Sbjct: 3   NKEREDLIEGRNAVIEALKSDSTIEQVLVSSGKSEGSINVILAKAKEKGIPVKYVDRKKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           DKI     VHQG+   + P     +D +            ++VLD + DPHN+G+I+R+A
Sbjct: 63  DKIS-NGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIEDPHNLGSIIRTA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 GII  KR +   +  + K+++GA++++   ++SN+  A+ K+   G    G   
Sbjct: 122 ELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLKKEGIWVYGAEI 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D +     +     +AL++G+EG+G+   T++    +  + M G + +LN S AA + +Y
Sbjct: 182 DGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSLNASVAAGIVMY 241

Query: 275 ITQNHFA 281
                  
Sbjct: 242 EILKQRI 248


>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
 gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
          Length = 293

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 148/288 (51%), Positives = 193/288 (67%), Gaps = 14/288 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPE-----------NLFLY 52
            K +    S +DSHYA LRR  RD K+ +      + +   +              +FLY
Sbjct: 2   SKDNPNDTSDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AALNNP RK  +L  T+NAL RL+       PFPV+ V PQ +DK +G EA+HQ
Sbjct: 62  GLHTVRAALNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A++ S LL+VLD V DPHN+GAI+R+AVAF    +ITT R+SP+E
Sbjct: 122 GVMLETRPLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL +AL ++H  GF +IGL S+  +PLE+    DK+AL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LG+EGKGLR KT++T  ++A L MPG IK+LNVSNAAA+ALY     F
Sbjct: 242 LGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALY-ASRQF 288


>gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
 gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
          Length = 300

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 135/285 (47%), Positives = 191/285 (67%), Gaps = 16/285 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS----FNQKSRH------------TSQPENLFLYGVHTV 57
           S +D+HYAKLRR+HRD K+ +        + +                 E+++LYG+HTV
Sbjct: 12  SNRDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTV 71

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL+NP+R+I  L AT+NAL RL+   +   PFPV+ V PQ ID+++G +AVHQG+ LE
Sbjct: 72  RAALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLE 131

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             PL +  L  + ++ L+++LD V DPHN+GAI+RSAVAF    ++TT+R+SP ES VLA
Sbjct: 132 ARPLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLA 191

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+ASGALE I +I + NL  A++ + + GF T+GL S+   P+E  +K  +IA++LGAEG
Sbjct: 192 KAASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEG 251

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KGLR KT+ET   +  L MPG IK+LNVSNA A+ALY  Q +  +
Sbjct: 252 KGLRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYLNR 296


>gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
 gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B]
 gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
          Length = 309

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 27/297 (9%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------------FLYGVH 55
            +++   K   Y K    +   K  +    +     +P++               + G +
Sbjct: 17  KDQVKGKKKDFYQK---ENIKGKVDRKLEVRRNEERKPKDFETVKFESQVVREDIIEGRN 73

Query: 56  TVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
            V  AL + S  I Q+L  K        +           VK V  + +D++  +  VHQ
Sbjct: 74  AVIEALKSSSTTIEQILVAKGDTTGSINVVLAEAREKRLVVKEVDRKKLDEMS-QTGVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G+     P     ++ +            +++LD + DPHN+GAILR+A      G++  
Sbjct: 133 GVIAIVTPYKYCEVEDILEYAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIP 192

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           KR +   +  + K+++GA++++   ++ N+   +  +   G    G   D K   +    
Sbjct: 193 KRRNVGITPTVYKTSAGAVQYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANF 252

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ALI+G+EG+G+   T+E    +  + M G I +LN S A  + +Y       K
Sbjct: 253 RGAAALIIGSEGRGISKLTKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRMK 309


>gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 265

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 3/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K++    +KSR   +     + G   +S A+     +I  LL   +  +  + 
Sbjct: 7   SPQNPLIKQLAQLKEKSRERKKSGLFLIEGKRELSLAIK-GGYEIKTLLFFPDLFSESEA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVN 142
            A   +   +  +  +   K+  ++     +A+  +   +   L     + L++V +   
Sbjct: 66  KAMSSYGIEIIEISKEVFQKLAHRDTTEGVIAVVKSKDHTLEALTLKSKNPLILVAEAPE 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGAILR+A A S D +I                +S        I +++  DA+  +
Sbjct: 126 KPGNIGAILRTADAASVDAVII-ANPKSDLYNPNIIRSSVGCVFTTEIAMASSNDAILYL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             + F          +P   +      A+++G E  GL    ++ AT    + M G+I +
Sbjct: 185 QKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDS 244

Query: 263 LNVSNAAAVALYITQNHF 280
           +NVS AA + ++  +   
Sbjct: 245 MNVSVAAGILIFEAKRQR 262


>gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 284

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 140/274 (51%), Positives = 181/274 (66%), Gaps = 10/274 (3%)

Query: 16  KDSHYAKLRRNHRDYKK---------MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KD+HYA LRR HRD K+               +    +    + LYG+HTV+AALNNP R
Sbjct: 11  KDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGRPAPAGRVRLYGIHTVAAALNNPHR 70

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           K+  LL T+NALARL   A      PV+ V P+ +D  +G EAVHQG+ LET PL +  L
Sbjct: 71  KLHSLLVTRNALARL-EIAEDAIRCPVEMVEPKRLDAELGGEAVHQGVMLETEPLPAIRL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +  ++L++VLD V DPHN+GAILRSA AF  D ++TT R+SP ES VLAK+ASGALEH
Sbjct: 130 SDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEH 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  I + NL DAL  +   GF+TIGL SD  +  E  +  ++IA++LGAEGKGLR KTQ 
Sbjct: 190 VTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQKTQA 249

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++A L MPG I++LNVSNAAA+ALY T+ H 
Sbjct: 250 TVDALARLEMPGAIRSLNVSNAAAIALYATRRHL 283


>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B1 str. Okra]
          Length = 257

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 102/254 (40%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+    ++  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 244

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 11/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YG + V  AL    R I ++L       A    +       PV+    +++DK+V  +
Sbjct: 4   IIYGRNPVIEALKA-ERPINKILLQHGTTRAGDILNLARQRKIPVQEADKRSLDKLV--Q 60

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      +D +            +++LD + DPHN+GAI+R+A A    G
Sbjct: 61  GNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELEDPHNLGAIIRTADAVGIHG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R +   +  + K+++GA+E++   R++NL   ++ +   G   +G  + + + L 
Sbjct: 121 VVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLKEKGCWVVGADAAAPQNLW 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +AL++G+EGKG+    +E    +  L M G I +LN S AAAV  Y      
Sbjct: 181 QADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQR 239


>gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
 gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
          Length = 263

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 119/260 (45%), Gaps = 12/260 (4%)

Query: 31  KKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--N 86
           K++++ N+++  R   +     + G + V  AL +     + ++A  N    ++      
Sbjct: 2   KELKNRNKRNFNREEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNMTGSINKVLGIA 61

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLD 139
                 +K V  + +D +      HQG+     P     ++ + N          +++LD
Sbjct: 62  KDKGIIIKEVDRKKLDSMS-ITGSHQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILD 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+G+I+R+A      GI+  KR +   +  + K+++GA E++   +++N+  A+
Sbjct: 121 EIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAI 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   G    G   D +    Q      +AL++G+EG+G+   T++    +  + M G 
Sbjct: 181 DEIKERGTWVYGADMDGENYCFQTNFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGK 240

Query: 260 IKALNVSNAAAVALYITQNH 279
           I +LN S AA + +Y     
Sbjct: 241 ITSLNASVAAGIMMYEVLKQ 260


>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
 gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
          Length = 295

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 151/291 (51%), Positives = 195/291 (67%), Gaps = 14/291 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLF-----------L 51
            K      S +D+HYA LRR  RD K+ +      Q+ +  ++    +           L
Sbjct: 2   SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHL 61

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+HTV AAL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+H
Sbjct: 62  YGLHTVRAALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIH 121

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ LET PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+
Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES VLAKSASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 295

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 14/291 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLF-----------L 51
            K      S +D+HYA LRR  RD K+ +      Q+ +  ++  + +           L
Sbjct: 2   SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHL 61

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+HTV AAL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+H
Sbjct: 62  YGLHTVRAALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIH 121

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ LET PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+
Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES VLAKSASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
 gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
          Length = 257

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+     +  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. Langeland]
 gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. 230613]
          Length = 257

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+     +  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
 gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 19397]
 gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. Hall]
 gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A3 str. Loch Maree]
 gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
          Length = 257

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+     +  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 277

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 120/272 (44%), Gaps = 15/272 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPS--RKIFQLLATKN 76
           +++++  K  Q  + K     +          + G ++V  A+       KI      K 
Sbjct: 6   KKDYKKAKTSQRSDVKLNGRKEERDGAKDLDRIEGRNSVLEAIKAGRTINKILVPKGEKE 65

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
              R            V+      +DKI    A HQG+    A      +D +       
Sbjct: 66  GSIRQIIALARERGIVVQETDRSNLDKISTTHA-HQGVIAYVAFKDYVEVDDILKIAQDK 124

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                +++LD + D +N+G+ILR+A A    G++  KR +   +A ++K+++GA+E++P 
Sbjct: 125 GEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPV 184

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++N++  ++ +       +G     +KP  +      +AL++G+EG+G+     E   
Sbjct: 185 ARVTNISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSEKCD 244

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + ++ M G I +LN + AAA+ +Y  +    
Sbjct: 245 FIVNIPMQGKISSLNAAVAAAIIMYEIRRQRN 276


>gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum
           H04402 065]
          Length = 257

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMVAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+     +  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 261

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++  +K+ +   ++ ++ ++     + G   V  A       I  L+ T +   ++D 
Sbjct: 6   SKDNNLFKETKKLKER-KNRTKSNKYIIEGFRLVQEAFKAGLN-IECLIVTCDGKDKIDS 63

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                +     +  +      +I+  E     +A+      +  L+        ++ D V
Sbjct: 64  YLREYINKDIKIYEMVNSLFKEIISTEKPQGIVAIVHMNEKTLDLNGS----FYLLCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   DGII TK      +    +S  G+L ++P          ++ 
Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    F+ +  S D+ K   QE    K+ L +G EG G+  +  E A +   + MPG  +
Sbjct: 180 LKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDEVYELADTKVKIPMPGNAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A +V +Y     
Sbjct: 240 SLNVAIATSVIMYEKIRQ 257


>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 260

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84
            +   K+M+  +Q  ++    +   L G H +  A+      ++        A    DW 
Sbjct: 6   QNPLIKQMRKLHQ-GKYRRAQQQFLLEGTHLLLEAVETGYPLEVICFTPQWQAKQAPDWL 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A L     ++ V  Q +  I        G+         P L+      L + ++ + DP
Sbjct: 65  AQLEQLTRLEVVSEQVLAAIAT-TVNPDGVVALAPFQPRPPLEIH---HLGLAVETLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+A A   +G++ +      E+  + ++ +G    +P     +    LQ    
Sbjct: 121 GNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDFQAELQHYRQ 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +     ++              +LG EG GL       A     + +   +++LN
Sbjct: 181 QGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIPLQPGVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
           V+ AAA+ LY  Q   
Sbjct: 241 VAIAAALLLYEAQRQR 256


>gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
 gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
          Length = 264

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 94/256 (36%), Gaps = 2/256 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   KK+    +KSR+  +     + G+  +  AL      I ++      ++    + 
Sbjct: 9   SNPTLKKLLQLQEKSRNRRKEGLFVVEGLRELRLALKGGYN-ISEVFFCPELVSEDTLNN 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +  P     +  +   K+  + +    + +               + L+++ +    P 
Sbjct: 68  LIKAPISYTELSLEVYQKVAYRGSTEGVITIVKTKAHQLVDIKTSETPLILIAEAPEKPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR+A A + D +I                +S        + +   T+ +  +   
Sbjct: 128 NIGALLRTADAANVDAVII-ANPKTDLYNPNIIRSSVGCVFTNQVAVGTTTEIISFLKKQ 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +  + +    +      A+++G E  GL  + ++ AT    + M G I ++NV
Sbjct: 187 KVNIYCAALQASEHYHLQDFTTATAIVVGTEATGLSDEWRKNATQNIIIPMQGEIDSMNV 246

Query: 266 SNAAAVALYITQNHFA 281
           S AA + +Y  +    
Sbjct: 247 SVAAGILIYEAKRQRK 262


>gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Ba4 str. 657]
          Length = 257

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 8/254 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
             +     +     + G + V  AL +     K+           ++           + 
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNKTIEKVMIAKGDLEGSIKIIISLAKEKGIVIN 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIG 148
            V  + +D I    A    +A  T        D +R          +++LD + DPHN G
Sbjct: 62  EVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A      G+I  KR +   +  + K+++GA E++   +++N+ + + K+   G  
Sbjct: 122 SILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G              +  IAL++G+EG+G+   T+     +  + M G I +LN S A
Sbjct: 182 IYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVA 241

Query: 269 AAVALYITQNHFAK 282
             + +Y       K
Sbjct: 242 GGMLMYEILKQRMK 255


>gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 258

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +Q ++   Q     L G H +  A+      +               
Sbjct: 4   SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNWPLLQVCATPAWQNQHPQL 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P +TV    +  +         +A+              ++ LL+ ++ + D
Sbjct: 63  WQQAIQAAPEQTVSDDLLAYLCTTVNPDGVVAIAARQPQRQP---PTSASLLIAVETLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A   DG+  T      +   + ++++G    +P    ++L   L+   
Sbjct: 120 PGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQ 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +     +   L Q        L+LG EG GL P     A S   +     +++L
Sbjct: 180 QQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESL 239

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ LY  +   
Sbjct: 240 NVAIAAALLLYEARRQR 256


>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 260

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 5/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+  S   K ++  +     L G   V  AL +    I  L  T   L        
Sbjct: 10  NDLVKRAASLKMK-KYRQKEGLFLLEGKRAVEEALASGWT-IRALFFT--RLPEGWEQQA 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                P   VP   + KI   E      AL                 +++VLD + DP N
Sbjct: 66  ENSSLPWYEVPLPVLQKITATEDPQSVAAL-VELRREELAAFAPERGMVLVLDRIRDPGN 124

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A    G++  +  +   +  + +S  G+L H+P        +  +     G
Sbjct: 125 LGTLIRTADALGAAGVVLLENTADLYNPKVVRSTMGSLFHLPVFTGVKTGELEEWCRQHG 184

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +     + +  + + +    +K AL+LG+E +G+ P+    A     + M G  ++LNV+
Sbjct: 185 YALWATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVA 244

Query: 267 NAAAVALYITQNHFA 281
            A  + ++     F+
Sbjct: 245 VAGGIVMFEAARAFS 259


>gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
          Length = 276

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 119/279 (42%), Gaps = 18/279 (6%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
            + KD+   ++ +++           ++          + G + V   L +       L+
Sbjct: 6   KNFKDNSNRRIEKDNNF--------SRNTSEKSFREDLIEGRNAVIEVLKSERTVEQILV 57

Query: 73  ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           A  +    ++    L       +K V  + +D++  +   HQG+  +  P     +D + 
Sbjct: 58  ANGDVSGSINLILALAKEKKVVIKQVDRKKLDQLS-QTGAHQGVIAQITPYKYCDVDDII 116

Query: 131 NS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           +          +++LD + DPHN G+I+R+A      GII  KR +   +  + K++ GA
Sbjct: 117 SYAEEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGA 176

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +EH+   +I+N+ +A+ K+   G    G   + +           +ALI+G+EGKG+   
Sbjct: 177 IEHMKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKL 236

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           T+     +  + M G I +LN S A  + +Y       K
Sbjct: 237 TKNKCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFK 275


>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 271

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           +E I S++          +   K++     + +   + +   + G H V  AL + +  +
Sbjct: 3   NEIITSVQ----------NPLVKRLHQLLSR-KGREEQQRFLVEGAHLVEEALKSGAEVV 51

Query: 69  FQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
             +   +  +        AN P    V   P   + K+   ++    +A           
Sbjct: 52  TVIYDQQRDMDPACQRALANHPEAVQVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAK 111

Query: 127 DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              +  +     LL+ LD + DP N+G ILR+A A + DG++         +  + ++  
Sbjct: 112 WVDQKREEQGSLLLLFLDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATM 171

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GAL  IP    S +  A +     G   I     +    ++       AL++G EG+G+ 
Sbjct: 172 GALFRIPVFTQSLVDTADEWKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGVS 231

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    A    H+ + G  ++LN + AA + +Y  Q   
Sbjct: 232 KEMFAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQRKR 270


>gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 261

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWD 84
            +   K+++  +Q S+   + +   + G H +  A       I      +     +  ++
Sbjct: 6   QNSLVKQIRQLHQ-SKGRQEQQLFLVEGTHLLEEACKRNYPLITVCHTFEWQEKHKFLYE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   ++ V  + I  +    +         A       + ++ + L +VLD + DP
Sbjct: 65  LVSQKAQRIELVSTKIIQSLATTVSP----DGVVAIAPQSQTNFLKITTLGIVLDKIQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+AVA + DG+  ++         + ++++G   ++      NL + + K+ S
Sbjct: 121 GNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHKAISENLKNEILKLQS 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +    +S     +        ++LG EG G+     + A     + +   +++LN
Sbjct: 181 QGLQVLATVPNSNINYWEIDLRKPTIIVLGNEGSGISKDLIDLADYSVKIPLSNGVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
           V+ +AA+ LY  Q   
Sbjct: 241 VAVSAAIILYEIQRQR 256


>gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
 gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
          Length = 289

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 14/289 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M     K+  +    +   + K    H+  +      ++      P+++ + G + V+ A
Sbjct: 1   MEQ---KRKTRPQERRSRKFEKEAPRHKRPQSETEPKRREEPRELPDDVLV-GRNAVTEA 56

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     K++     +                 V+ V    I+ + G    HQG+    
Sbjct: 57  LKSGRGINKLWIASGDREGSVAEIAALAKERGIVVQYVERAKIEALAGGHR-HQGVLAYV 115

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           AP+    L+ +         +  L++LD + DPHN+GA+LR+A A    GI+  KR S S
Sbjct: 116 APVPYAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGILIPKRRSVS 175

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +A +AK+++GA+E++P  RI N+   L+K+   GF   G   D +K   +      + L
Sbjct: 176 LNATVAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEADLTGPLVL 235

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G+EGKG+   T+E    +  + M G I +LN S A ++ +Y +    
Sbjct: 236 VVGSEGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMYESMRQR 284


>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
          Length = 260

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 102/257 (39%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    QK++           G+     A ++   K++      + L       
Sbjct: 6   SNGQIKNIIQLQQKTKARRDRGLFVAEGLKMFQEAPDSWIEKVYIA----DRLYEEQEIQ 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV+ V  +   +I   +     L L   P         + + LLMVL+ + DP 
Sbjct: 62  KRLGSLPVEIVDDRIFRQISDTKTPQGILCLLRCPHYRLEKILEKENPLLMVLEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A     DGI+ +K      +  + +S  G++  +P++ I N+ +AL+ +   
Sbjct: 122 NVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIENMEEALRLLKKK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T       K   + E      A  +G EG GL  +  E A     + M G +++LN 
Sbjct: 182 KVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIRIPMEGQVESLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           + AA + +Y       +
Sbjct: 242 AMAAGILMYEAGRQRRR 258


>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 136/274 (49%), Positives = 182/274 (66%), Gaps = 5/274 (1%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS----QPENLFLYGVHTVSAALNNPSR 66
           K  + ++SHYA+LRR +RD K   S + K+        Q   + LYG+H+V AAL NP R
Sbjct: 2   KEKTSQNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKR 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               L  T+NAL RL+   +  +P PV    P+ +D +VG EAVHQG+ LET+PL    L
Sbjct: 62  IFKCLYVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKL 120

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE 
Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEM 180

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL + LQ++H  GF + GL S+  +PLE  +   KIAL+LGAEGKGLR KT+E
Sbjct: 181 IHYITVRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRE 240

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++A L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 241 TVCALARLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
 gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
          Length = 264

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 19/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  +                  +   K +    +K++   Q     + G   +  A
Sbjct: 1   MKQITSVQ------------------NPFIKSLVQLQEKAKVRKQTSTFIIEGKREIELA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         L   +        +    +   +  +  +   K+  ++     LA+    
Sbjct: 43  LKGDYELETILFLPEIISELELKNLIKSNGVDIIEISKEVYKKLAYRDTTEGILAIAKTK 102

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L+ +   +  + L+++ + +  P N+GAILR+A A + D +I                +
Sbjct: 103 SLALSELKLSKNPLILIGESLEKPGNVGAILRTADAANIDAVII-ANPKSDLYNPNIVRS 161

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           S        I +    + +  + +        +         +      AL++G E  GL
Sbjct: 162 SVGCLFTRQIAVGTTEEVIAYLKANNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGL 221

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K +  +T    + M G I ++NVS AAA+ L+  +   
Sbjct: 222 SEKWRIESTKNIIIPMQGEIDSMNVSVAAAILLFEAKRQR 261


>gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 268

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  + ++R   +     + G H +  AL      +  +  T+    R    A
Sbjct: 6   QNPLIKQIRKLH-RTRERQEQNLSLIEGTHLLETALALNC-SLETVCYTEKWQQRQAELA 63

Query: 86  NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V+ V P+ +  +         +A      L P        QL +VL+ + D
Sbjct: 64  EKFQNQAKRVEIVSPEVLASLATTVNPDGVIATIARDHLHPV--PQNPLQLGLVLERLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+AVA    GI  +      ++  + +S++G     P +  S+L+  ++K  
Sbjct: 122 PGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVESDLSALVKKYQ 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I     + K   +        ++LG EG GL P+    A     + + G +++L
Sbjct: 182 AQGVKAIATLPTATKSHWEIDFTRPTLILLGNEGAGLSPQLAALADETVKIPLFGGVESL 241

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A AV LY  +   +
Sbjct: 242 NVAIATAVILYEARRQLS 259


>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 286

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 189/288 (65%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K +       +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAVTEGKSPRKPQRPSISAGAVTEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPERKILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++HS GFQTIGL S+  + +E  +   +IAL+
Sbjct: 176 TGVLAKAASGALEMISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
 gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
          Length = 255

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 25/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++ KI + K    A                   +   +     + G H V  A
Sbjct: 1   MEVIQSKQNPKIKAWKKLATA-------------------KGRQKAGQYLIEGTHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +  + +  L+AT +    L    +     P+  V P+ +  +           +    
Sbjct: 42  LKSG-QPVRHLVATLD--YDLSQLPDQALSLPLLLVSPELLKDLSETPTPQ--GIMAIID 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L S  LD   + Q  ++LD V DP N+G ++R+A A + DG+I  K      +  + +++
Sbjct: 97  LPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRAS 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239
            G+L H+  + +  L +A     + G   +  +   + K  ++   N K+AL+LG EG+G
Sbjct: 157 QGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNEGQG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     + A    ++ MPG  ++LNV+ A  + ++  Q
Sbjct: 217 VSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254


>gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
 gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
          Length = 263

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 10/244 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
           +     + G + V  AL +     + ++A  +    ++    +       +K V  + +D
Sbjct: 18  EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155
            +      HQG+     P     ++ +            +++LD + DPHN+G+I+R+A 
Sbjct: 78  SMS-ITGSHQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR +   +  + K+++GA E++   +++NL  A+  +   G    G    
Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMS 196

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +    Q      +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y 
Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMYE 256

Query: 276 TQNH 279
               
Sbjct: 257 VLKQ 260


>gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score =  144 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++KI   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    R I Q+   +N L +L        L     V  V  + +  +   E+    +A  
Sbjct: 40  LKAG-RSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKEVLKSLADSESPQGLIAEV 98

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T         A +     ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 99  TKIEEVIDFSAAK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P +R++      Q   +         S +    +   +    ALI+G EG
Sbjct: 155 RSMQGSNFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPH-FALIMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
          Length = 252

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++KI   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    R I Q+   +N L +L              V  V  + +  +   E+    +A  
Sbjct: 40  LKAG-RSIKQIFVEENKLTKLTEMIGAEKSLTDLSVNLVSKEVLKSLADSESPQGLIAEV 98

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T         A +     ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 99  TKIEEVIDFSAAK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P +R++      Q   +         S +    +   +    ALI+G EG
Sbjct: 155 RSMQGSNFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPH-FALIMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +   NQK++   +       G      A   P   I ++     AL+      
Sbjct: 6   NNGQVKNIIQLNQKTKARREQGLFVAEGRKMFGEA---PRDWISKVYV-SEALSGDAELM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P + V      ++   +     + +   P           + L+M+L+ + DP 
Sbjct: 62  AQVEKLPYEIVTDSVFRQMSDTQTPQGIMTVLKKPSYIMEDILGGENPLVMILEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ILR+       G++ TK      +  + +S  G++  +P++ + ++    Q++   
Sbjct: 122 NAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVESVVSLAQELKDR 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +T       K   +QE      A ++G EGKGL  +  ++A  +  + M G +++LN 
Sbjct: 182 NIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIRIPMCGKVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + A+ + +Y      
Sbjct: 242 AMASGILMYEAARQR 256


>gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT]
          Length = 265

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 10/248 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPP 98
           R   +     + G + V  AL +     + ++A  N    ++            +K V  
Sbjct: 16  REEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNVSGSINKVLGIAKDKGIIIKEVDR 75

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           + +D +      HQG+     P     ++ + N          ++VLD + DPHN+G+I+
Sbjct: 76  KKLDSMS-ITGAHQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIM 134

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      GI+  KR +   +  + K+++GA E++   +++N+  A+ ++   G    G
Sbjct: 135 RTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYG 194

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D +    Q      +AL++G+EGKG+   T++    +  + M G I +LN S AA +
Sbjct: 195 ADMDGENYCFQTNFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGI 254

Query: 272 ALYITQNH 279
            +Y     
Sbjct: 255 MMYEVLKQ 262


>gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 259

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 6/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLD 82
              +   K+++  +  ++   +     L G H V AA       +            R  
Sbjct: 4   SPQNPLVKQIRQLHT-AKGRREEGLFILEGTHLVEAACAVNWDIMAVCCTPQWEERHRDL 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           W+  +      + V  + I  +              A         V  + L +VL+ V 
Sbjct: 63  WELAVKRADRTEQVSDRLIAAMT----TTVNPDGVVAIARRRDQTPVPITSLGLVLETVQ 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A A   +G+  +          + ++++GA   +P    S+L   L  +
Sbjct: 119 DPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSDI 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +   +D+     +       A++LG EG GL P     A     + + G +++
Sbjct: 179 QKQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADYHIRVPLLGNVES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+  AA+ LY  Q   
Sbjct: 239 LNVAICAALILYEAQRQR 256


>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 269

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 8/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78
            + +   K +    ++ +H  + E   + G+  +  A+ +    I  +          A 
Sbjct: 8   SKQNEQVKNLVKLRER-KHRDRQERFLVEGLRELEHAIGSGFE-IETIYFCPELFPSAAH 65

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                        P+  +  +   K   +E     + +      S     +    LL+VL
Sbjct: 66  QATIDQLRRDGEVPLTRMSEEAFSKAAYREGPDGIVGIGKQQAHSLHELHLPKQPLLLVL 125

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + +  P N+GAILRSA     D II             A  +S  L     I  ++    
Sbjct: 126 EGIEKPGNLGAILRSADGAGADAIIL-TDCILDLYNPNAIRSSQGLIFALPIVNADREAL 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +    +QT+  +  + +   +       AL  G+E  GL             + M G
Sbjct: 185 ADWLQKGRYQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNHLDQRICIPMKG 244

Query: 259 IIKALNVSNAAAVALYITQNHF 280
              +LNV+ AAAV LY  +   
Sbjct: 245 RADSLNVAAAAAVCLYEARRQR 266


>gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           oremlandii OhILAs]
          Length = 250

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 10/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  AL +       L+A       L            P++ V  Q ++++   +
Sbjct: 6   IAGRNPVMEALKSGREIDKILIAKGTEGGSLIKIIGKAKDRGIPIQYVERQKLNEMSSSD 65

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            VHQG+    A      ++ +            L++LD + DPHN+G+++R+A A   DG
Sbjct: 66  -VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMDPHNLGSMMRTADAVGVDG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S   ++ +AKS++GA+E++P  ++SN+   + K+   G    G      K   
Sbjct: 125 IIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIKDMGIWVAGADMSGSKEHY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +AL++G EG+G+    +E    +  L M G + +LN S AAAV +Y      +
Sbjct: 185 NMDLKGPLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQRS 244


>gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822]
 gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822]
          Length = 264

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 101/258 (39%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DW 83
            +   K+M+  + +++   +     + G H +  A       +  +  T +   R    W
Sbjct: 6   QNPLVKQMRKLH-RAKGRREQNLFLIEGTHLLETACKV-KSSLMVVCCTPDWQNRYPQLW 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +         + V P+ +  +         +A          L  +    L +VL+ + D
Sbjct: 64  ELASQKAQRAEIVTPEILAAMTTTVNPDGVVASAARISNPTEL--ISPLSLGLVLEQLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+AVA   +G+  +      ++  + ++++G    +P     NL   ++   
Sbjct: 122 PGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVPMRVSQNLPQVIEDYK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S   Q I       K   +        +++G EG GL  +    A    ++ + G +++L
Sbjct: 182 SQNVQVIATLPQGTKTYWEIDFTRPTLILMGNEGAGLSDELISLADIGVNIPLGGGVESL 241

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A A+ LY  +   A
Sbjct: 242 NVAIATALLLYEAKRQRA 259


>gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 256

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K ++    K ++  +    F+ G ++V  AL +    +  LL  ++       
Sbjct: 5   SEKNEFIKDVKKLADK-KYRYEKRLFFVEGKNSVFEALKSGFEIVH-LLVAEDFNIDFQI 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +        +  V  +   KI    A    +A+          D V+     ++LD V D
Sbjct: 63  EKE-----KIVFVDEKVFKKISDTVAPQMIMAV-VKMPKWEVNDIVKEGGFYVILDEVQD 116

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA AF+ DG+          +  + +S  G++ H+P +     +     + 
Sbjct: 117 PGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLPVVNDVEPSRLFHVLK 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  S  ++K +     +   ALI G E +G+     E   S   + M G+ ++L
Sbjct: 177 KHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLLDEFIDSSFKIPMDGMAESL 236

Query: 264 NVSNAAAVALYITQNHF 280
           NVS AA++ LY ++   
Sbjct: 237 NVSVAASICLYESERQR 253


>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 264

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 21/281 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++  I                  K +    +KSR   +     + G+  ++ A
Sbjct: 1   MKQITSSQNTYI------------------KGLLKLQEKSRERKKLGLFIIEGLREINLA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETA 119
           L         +L   + + +   D  +     V  +  +  +K+  + +    +A+    
Sbjct: 43  LKANYT-FRTVLFCIDLIQKTAVDTLIDSSTEVIEISKEVYEKLAYRNSTEGIIAVANAK 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 +     + L+++ + +  P N+GA+LR+A A + D +I                
Sbjct: 102 SFSLGEISFSNKNPLILIAESLEKPGNVGALLRTADAANVDAVII-ANPKSDLYNSNIIR 160

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           +S        I +    + +  +          +  +      E      A+++G E  G
Sbjct: 161 SSVGCVFTNQIAVGTSEEIITFLKENKISIYAATLQNSNKYHLEDYKKPSAIVVGTEATG 220

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L    ++ AT   ++ M G I ++NVS AAA+ ++  +   
Sbjct: 221 LSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIFEAKRQR 261


>gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 282

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 143/275 (52%), Positives = 191/275 (69%), Gaps = 6/275 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT------SQPENLFLYGVHTVSAALN 62
           S+K  + KD+HYAKLRR +RD K   +   + R        +    + LYG+HTV AAL+
Sbjct: 2   SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP RKI ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +  LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL +AL ++H  GF+T+GL SD+   LE+    +KIAL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KT+ET T++A L MPG I +LNVSNAAA++LY+ +
Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276


>gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925]
 gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           BKT015925]
          Length = 263

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 107/244 (43%), Gaps = 10/244 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
           +     + G + V  AL +     + ++A  +    ++    +       +K V  + +D
Sbjct: 18  EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155
            +      HQG+     P     ++ +            +++LD + DPHN+G+I+R+A 
Sbjct: 78  SMS-ITGSHQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR +   +  + K+++GA E++   +++NL  ++  +   G    G    
Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMA 196

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +    Q      +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y 
Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMYE 256

Query: 276 TQNH 279
               
Sbjct: 257 VLKQ 260


>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 290

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 17/291 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61
           +++ K  + ++S+  K R N+R  KK        + + + +  +     + G + V  AL
Sbjct: 2   RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61

Query: 62  NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               R I  L  + + L                 +K V  + +D +    AVHQG+    
Sbjct: 62  KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +       +    +  +++LD V DPHN+G+I+R+A  F   GII  KR S S
Sbjct: 120 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+
Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           I+G EGKG+   T +    +  + M G I +LN S A  + +Y       K
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 290


>gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 264

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 105/258 (40%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  + ++R   +     + G H +  AL         +  T+    R    A
Sbjct: 6   QNPLIKQIRKLH-RTRERQEQNLSLIEGTHLLETALAVNCSP-ETVCYTEKWRQRQGQLA 63

Query: 86  NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V+ V P+ +  +        G+    +      +       L +VL+ + D
Sbjct: 64  EKLQNQAKRVEIVSPEVLASLAT-TVNPDGVIATISRTHLHPIPQNPLQ-LGLVLERLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+AVA    GI  +      ++  + +S++G     P +  S+L+  ++K  
Sbjct: 122 PGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVESDLSALVKKYQ 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I     + K   +        ++LG EG GL P+    A     + + G +++L
Sbjct: 182 AQGVKAIATLPTATKNHWEIDFTRPTLILLGNEGAGLSPQLATLADETVKIPLFGGVESL 241

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A AV LY  +   +
Sbjct: 242 NVAIATAVILYEARRQLS 259


>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 256

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K ++  ++K ++  + +  F+ G ++V  AL +     + L+   +    +D 
Sbjct: 5   SEKNDLIKDIKKLSEK-KYRYEKKLFFVEGKNSVFEALKSSFEIKYVLV---SEDCDIDL 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D           V      KI       Q +            D ++   L ++LD V D
Sbjct: 61  DVEKDRLI---FVDKGIFKKISD-TVTPQMIMAVVKMPDYNVNDLIKEDGLYIILDEVQD 116

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA AF+ D + T        +    +S  G++ H+P +    +    + + 
Sbjct: 117 PGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVNDVPVDKLFEALK 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  +  ++K +     +  IALI G E +G+             + M G+ ++L
Sbjct: 177 RNGVRVLSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDIYVDGSFKIPMDGMAESL 236

Query: 264 NVSNAAAVALYITQNHF 280
           NVS AA++ LY +Q   
Sbjct: 237 NVSVAASICLYESQRQR 253


>gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 262

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 20/280 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++  I S                  +    +KS+   +     + G   +  A
Sbjct: 1   MKQITSSQNPYIKS------------------LVLLQEKSKARKKSGTFLIEGQREIELA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I  +L   + +++            +  +  +   K+  ++     LA+    
Sbjct: 43  -QKGGFVIETILFLPDLISQKQITQITNQAHDIIEISKEVYQKLAYRDTTEGILAVAKTK 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               +   +  + L+++ +    P NIGA+LR+A A + D +I                +
Sbjct: 102 PFLLSDLKLSQTPLILIAEAPEKPGNIGALLRTADAANLDAVI-IANPKSDLYNPNIVRS 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           S        I      + +  +          +  +  P   +      AL++G E  GL
Sbjct: 161 SVGCLFTTQIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTEATGL 220

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + +  AT    + M G I ++NVS AAA+ ++  +   
Sbjct: 221 TQEWRNNATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260


>gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 261

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 12/257 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91
           + N K +  ++ E   + G + V  AL    R I +LL  + AL    R  +D       
Sbjct: 5   NLNLKKKGRNRLE-DIIAGRNPVREALRAN-RPINKLLIAEGALTGSLREIYDLARERKI 62

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPH 145
           PV+ V  Q + K+V  EA HQG+    A      +D             L++LD V+DPH
Sbjct: 63  PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A A    GII  +R S   S  +A+S++GA+E++P  R++N+   ++ +   
Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   D ++       +  +AL++G EGKGL    +E    +  L M G + +LN 
Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           S AAA+  Y       K
Sbjct: 242 SVAAALLSYEVVRQRRK 258


>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 269

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + +  QKS    +     + GV  +    +     I  L   ++ L +     
Sbjct: 11  QNAKVKNLVALQQKSSERRKQGLFVVEGVRELIHCAHAGYE-IENLFCCRDILDKNPEAW 69

Query: 86  NLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L        +  V     +K+  + +    +A       +     +  S L++VL+ V 
Sbjct: 70  KLDSLIGQTTIYEVTQAVYEKMAYRGSTEGMMAEVKVKNRTLADLDLPESPLIVVLESVE 129

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+GA+LRSA A   D +I     +   +  L +S+ GA+  +P +  S+        
Sbjct: 130 KPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIFTVPTVACSSQACMNFLK 189

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                       DS    + ++     A+++G E  GL    ++ A +   + M G + +
Sbjct: 190 ERNIKILTAQLQDSAPYYDSDM-RGGTAIVMGTESTGLTDAWRKAADAHIRIPMLGQLDS 248

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNVS +AA+ ++      +
Sbjct: 249 LNVSVSAAILMFEAVRQRS 267


>gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 267

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 24/286 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN IS  ++  I  +K                        ++  Q    F+ G+  V  A
Sbjct: 1   MNFISSSQNPVIKEIKALKEK-------------------KYRDQTGLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L         L++ K A       +       +   V T+  + +   V      QG+  
Sbjct: 42  LKEKIEISKILVSDKLADVHGGKEILEQLENSNCCNVYTLTNK-LYMEVTDTENPQGILA 100

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                         N    +VLD + DP N+G I+R+A A    G+I +K      +  +
Sbjct: 101 ILNKKSISLESVYDNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKV 160

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S  G+L HIP     N+   L++M + G +         K   +    D IA+I+G E
Sbjct: 161 LRSTMGSLFHIPICYSENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYKDNIAIIVGNE 220

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             G+       +  +  + M G  ++LN S AA + +Y       K
Sbjct: 221 ANGISDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLRLRMK 266


>gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 246

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL +  R I ++L  K A     R            V+ V  + +D +  +
Sbjct: 5   IEGRNPVLEALRSG-RTINRILVAKGAREGSIREVIALARSQGVIVQEVARERLDAMA-R 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A      LD V           LL+VLD + DP N+G++LR+A A    
Sbjct: 63  GRNHQGVIALAAAHRYYDLDEVLERAAASGEDGLLLVLDGIEDPQNLGSLLRTADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R +   +  +AK ++GA+E++P  R++N+   L+ +   G+  +G   ++ +  
Sbjct: 123 GVIIPERRAVGLTETVAKVSAGAVEYVPVARVTNIARTLEMLKERGYWVVGTHQEADELY 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +A+++G+EG+G+     ET      L M G + +LN + A A+ LY  +   
Sbjct: 183 YEARLTGPLAVVIGSEGRGMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQR 242

Query: 281 A 281
           +
Sbjct: 243 S 243


>gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
 gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
          Length = 243

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           + G + V  AL +  R    L+                    +K V  + +D +    + 
Sbjct: 4   IEGRNPVMEALKSERRIDEILIYQNAEGVNELLKKAKAEGIKLKRVAKEKLDNLADSYS- 62

Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+     P+   +LD          +  L ++LD + DPHN G+ILR+A A    G+I
Sbjct: 63  HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGVI 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S   ++ + K+++GA+EHIP  +++NL  A++++    F   G   +++    Q+
Sbjct: 123 IPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKENRFWIAGADMEAEGFCYQQ 182

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + +++G+EG G+R   +E    +  L M G I +LN + A AV +Y       
Sbjct: 183 DLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQRN 240


>gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 290

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 17/291 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61
           +++ K  + ++S+  K R N+R  KK        + + + +  +     + G + V  AL
Sbjct: 2   RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61

Query: 62  NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               R I  L  + + L                 +K V  + +D +    AVHQG+    
Sbjct: 62  KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +  +         +  +++LD V DPHN+G+I+R+A  F   GII  KR S S
Sbjct: 120 TPYEYSEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+
Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           I+G EGKG+   T +    +  + M G I +LN S A  + +Y       K
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 290


>gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 272

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 3/268 (1%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +++  Y      +   K+      + +  ++     + G+H V  AL++ +  +  ++ +
Sbjct: 1   MQNPTYEIRSIRNPKVKEWAGLLDR-KGRNRQGKFLIEGIHLVEEALHSNA-PVQTIVYS 58

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                  +             V    + K    E      A+      S  L       L
Sbjct: 59  LEKEFPHELYKKFSSHADWIGVSRAVLQKCSDTETPQGIFAVVRKSEQSLELITAEEWDL 118

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V+D V DP N+G I+RSA A     I+  +      +    +S  G+L H+P I    
Sbjct: 119 VVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIEADL 178

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                + + +     +     ++K   +        +I+G EGKG   +  E AT    +
Sbjct: 179 ADLLPKAVKAGIQV-LCTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMII 237

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G  ++LNV+ AA V L+       K
Sbjct: 238 PMKGHAESLNVAMAATVLLFEASRQRMK 265


>gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 269

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 23/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   ++  I  +K  H                     ++       F+ G+  VS A
Sbjct: 1   MNYIQSSQNSTIKDIKSLHLK-------------------KNRDAHGLYFVEGIRFVSDA 41

Query: 61  LNNPSRKIFQLLATK-NALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALE 117
           ++N       +++ K   L                +  VP +   ++   +   QG+   
Sbjct: 42  IDNGQSIAKIIISEKLEGLNGGSELIEKVKGACSDISLVPEKIFREVSDTQ-TPQGILAV 100

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                      +     +++LD + DP N G I+R+A A     ++ +K      S  + 
Sbjct: 101 IKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL 160

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++ HIP     N+T+ ++ +    ++ I      K    QE    + A+I+G E 
Sbjct: 161 RSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGNEA 220

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+  +T   A S+  + MPG  ++LN S AA+V +Y     
Sbjct: 221 NGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262


>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 263

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 5/260 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L   +   K+     +K ++  +     + G+H V  AL + +  +  +         ++
Sbjct: 4   LSAQNPRVKEWAGLLEK-KNRDKQGKYLIEGIHLVQEALQSRAD-VECVCYDLEHGIPVE 61

Query: 83  WDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
             A       V    V    I K    ++     A+      +      +   L++VLD 
Sbjct: 62  LQAAASAGLDVDWIGVSAAVIAKCSDTKSPQPVFAVVRKDRGTVAPLLAKERSLVVVLDG 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+RSA A + DG+I     +      + ++  G+L H+P +      + L 
Sbjct: 122 VQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRATMGSLFHLPVVHADLA-EVLP 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +    G +  G S  +            + L+ G+EG GL P  +E       + M G  
Sbjct: 181 QAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEGGGLSPAVRELMDDGLLIPMRGQA 240

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AA+V LY      
Sbjct: 241 ESLNVAMAASVLLYEAMRQR 260


>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 268

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S   K +H  +       G+  ++ A       ++   A  +A   L    
Sbjct: 9   SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                             + K+ GK+     + +  +  L  +    R + + +V   + 
Sbjct: 68  IEAVEDKGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I         S    ++  GAL            D L  +
Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE-DFLVWL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  IG S  + +  ++        +++G E +GL    ++    +  + M G   +
Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A A+  Y   N   K
Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266


>gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016]
 gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 256

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 114/252 (45%), Gaps = 11/252 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVP 97
           +   Q     + G ++V  ALN+ +  I Q+      +       +         VK V 
Sbjct: 2   KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150
            + +D+I  +  VHQG+  +  P     L+ + +          +++LD + DPHN GAI
Sbjct: 62  KRKLDRIS-QTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A      GII  KR +   +  + KS++GA+E++   +++NL   ++K+        
Sbjct: 121 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G     +        N  IALI+G+EGKG+   T++    +  + M G I +LN S AA 
Sbjct: 181 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 240

Query: 271 VALYITQNHFAK 282
           + +Y       K
Sbjct: 241 MLMYEILKQKIK 252


>gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797]
 gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797]
          Length = 261

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 109/259 (42%), Gaps = 8/259 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
             K     +        +  +++G + V   L      +++L  + +  +          
Sbjct: 2   VGKPSKLKKNKPLLGNHQKCWIWGRNAVRETLFAGFWPMYELHLSDHLKSEEIEQLEQQA 61

Query: 90  P---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVN 142
                PV     + + +   + + HQG+  + AP    +++          L ++LD + 
Sbjct: 62  ARSTIPVFISTDKELTQKC-RASDHQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N GAI+RSA     DGI +        ++++ ++++GA+ H+P ++ ++L    +  
Sbjct: 121 DPFNFGAIIRSAEIMGADGIFSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDW 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +G +  + + L         A+I+G EG G+ P+ Q   T +  +   G  ++
Sbjct: 181 KQNGINIVGTAMQASEKLNDYNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ +A++ LY       
Sbjct: 241 LNVAVSASILLYEASRQRN 259


>gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 276

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 135/276 (48%), Positives = 190/276 (68%), Gaps = 3/276 (1%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
              +K  + KDSHYA+LRR HR   +  + N+++        + LYG+HTV AA++NP+R
Sbjct: 2   SDHKKTGTPKDSHYARLRRAHR---ERTAPNERAGADLPEGIVRLYGLHTVRAAIDNPAR 58

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            I Q+L T+NA  RL        PFPV+ V P+ ID +VG +AVHQG+ +E         
Sbjct: 59  SIRQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPF 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + ++ L++VLD V DPHN+GAI+RSAVAF  D ++TT R+SP+ES VLAK+ASGALEH
Sbjct: 119 SGLEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEH 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I +I + NL +A++++H+ GF T+GL S+  + LE+ ++  KIAL+LG+EGKGLR KT+E
Sbjct: 179 IDHIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRE 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           T  ++A L MPG I +LNVSNAAAVALYI +   A+
Sbjct: 239 TVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274


>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 245

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 6/240 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKI 104
               + G + V  AL +       L++  N    ++   +L      P+K V  + +D+I
Sbjct: 2   REDLIIGRNAVVEALESHKTLESILISKGNNKGTINKIISLAKENRIPIKNVDKKKLDEI 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              E      A  T        +        +  +++LD + DPHN GAI+R+A  F  D
Sbjct: 62  SEGENHQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S   + ++ KS+ GA+EH+   +++N+   +  +        G    + + +
Sbjct: 122 GIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKENNIWIYGADMATDRYI 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E     IAL++G+EGKG+   T+E    +  + M G I +LN S A  + +Y      
Sbjct: 182 YSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQR 241


>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 260

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 105/258 (40%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +K  +   ++ ++ ++     + G   V  A       +  L+ T++A  ++D 
Sbjct: 6   SKENNLFKNTKKLKER-KNRTKTSRYIIEGFRLVQEAFKA-KVDVDYLIVTEDAHDKVDE 63

Query: 84  DANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      +  +      +++  E     LA+     +    D        ++ D V
Sbjct: 64  FLGKYINGEIKIYEISSNLFKELISTENPQGILAVIKMNTMESKFDGD----FYLLCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A     II TK      +    +S  G++ +IP          +++
Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  +  S D+ K   Q     ++ L +G EG G+  +  E A +   + MPG  +
Sbjct: 180 LKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSREVLEMADTKVKIPMPGNAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A++V +Y     
Sbjct: 240 SLNVAVASSVIMYEKVRQ 257


>gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 257

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 5/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    +KSR   +     + G+     A+    R + +    ++         
Sbjct: 7   QNPKIKNLLKLQEKSRERKKQNTFVVEGLQENRLAIEGGFRAL-EFYICEDIFDDNLPL- 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V     +KI  ++     + +      + +   +  + L++VL+ V  P 
Sbjct: 65  ---ENGKIYKVNKPVFEKIAYRKTTGGIVGVYATKENNLSGVELPENALILVLEAVEKPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A     D +I         +  + +S+ G L        S         ++ 
Sbjct: 122 NLGAILRTADGAKVDAVIVCDETVDFYNPNVIRSSVGTLFTNQIASGSKEEVLNFLKNNN 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    D+ K L +   +   A++LG E  GL     + +  +  + M G + +LNV
Sbjct: 182 IQIVSTFLRDNTKSLYEMDFSSSSAIVLGTEATGLSDFWADESDVLIKIPMLGKVDSLNV 241

Query: 266 SNAAAVALYITQNHF 280
           SNAAA+ +Y      
Sbjct: 242 SNAAAICVYEAVRQR 256


>gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 268

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 20/281 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I+  K+ +I  L+                      + ++  +     + G+  V  AL
Sbjct: 3   ETITSAKNMRIMYLQSL-------------------LQKKYRDREGKFLVEGLRFVQEAL 43

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            + +     +LA         + + +P   P+  +  Q   KI   E      AL     
Sbjct: 44  QSGADIEELILAAGVLEKNPSFQSIIPDKIPITIIADQLFKKITDTETPQGIAALVRKKE 103

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                  V  +  L+++D V DP N+G I+R+A A    G+   K  +   +    ++  
Sbjct: 104 FRAEDLFVVANPFLLIIDKVQDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATM 163

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGL 240
           G++ H+P I   ++ +A       G + I                ++ +AL++G E +G 
Sbjct: 164 GSVFHVPIINFDSIEEACHLAKKHGLKLIVTDISKDSSSYLAVDYSEPVALVVGNEARGA 223

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                E +     + MPG  ++LNVS AA + L+      A
Sbjct: 224 SSFAIENSDYRVAIKMPGKAESLNVSVAAGIILFEAARQRA 264


>gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
           praevalens DSM 2228]
          Length = 246

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    RKI ++   +   A++  D          P+  +  Q +++   +
Sbjct: 4   IEGRNPVYEALK-GKRKIHRIFIQEEITAKIIEDILELAAEKNIPISRISSQKLNE-SAQ 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+  E   L S  L+             L+++LD + DPHN GAI+R+A A   D
Sbjct: 62  SHAHQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKDPHNFGAIIRTAYAAGAD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +R +   + V+ K+A+GA EH+P +++SN+  A++ +    F   G  + + +  
Sbjct: 122 AVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLKEANFWIAGADAAADQTH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      I L++G+EG GLR   +E    +  + M G + +LN S AA+V +Y      
Sbjct: 182 FEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241

Query: 281 AK 282
            K
Sbjct: 242 GK 243


>gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
 gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
          Length = 247

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V++ +      + ++      ++   R            V  V    +D + G
Sbjct: 6   LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+A           LS  L+ +    LL+VLD + DPHN+GA LRSA AF    
Sbjct: 66  -GARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K A GA E +PYI ++NL   L+++   G   +G + ++K+ L 
Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +A++LGAEG+GLR  T ET   +  + M G +++LNVS +  + L+  +   +
Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQRS 244


>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 277

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 18/283 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
            K     +    K R+N    K       KS    +     + G + V  AL    R I 
Sbjct: 3   NKPKKTSNLTVKKDRKNEPLKKN------KSITCQEEREDIVIGRNAVMEALK-GDRTIE 55

Query: 70  QLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +  + N L                 +K V  + +D +   E  HQG+  +  P     +
Sbjct: 56  AIYVSNNKLEGSINAIMGMAKDQKILIKEVDKRKLDSMCDGE-THQGVIAKVTPFKYSEV 114

Query: 127 -------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  +    +  +++LD V DPHN+G+I R+A  F   GII  KR S S +A + KS
Sbjct: 115 SDIFELAEQKGEAPFIVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKS 174

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + GA+EH+   +++N+   ++++   G    G    +++   +   +   AL++G EG+G
Sbjct: 175 SVGAIEHVKVAKVNNINSTIEELKEKGVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRG 234

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +   T +    +  + M G I +LN S A  + +Y       K
Sbjct: 235 MSKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEVLKGRFK 277


>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 268

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 5/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S   K +H  +       G+  ++ A       ++   A  +A   L    
Sbjct: 9   SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 +           + K+ GK+     + +  +  L  +    R + + +V   + 
Sbjct: 68  IEAVEDNGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I         S    ++  GAL            D L  +
Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWE-DFLVWL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  IG S  + +  ++        +++G E +GL    ++    +  + M G   +
Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A A+  Y   N   K
Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266


>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
          Length = 303

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 188/288 (65%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGTEGKSPRKPQRPSISASAVTEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP R+I ++LAT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPERRILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 133 GVMIEAEPLRARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++HS GFQTIGL S+    +E  +   +IAL+
Sbjct: 193 TGVLAKAASGALELISHIEVRNLAEAIEELHSLGFQTIGLDSEGPLEMEATLSGGRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
          Length = 281

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 21/277 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN-----------LFLYGVHTVSAALNNPSRKIFQLL 72
            RN+   ++ Q       + +  +              + G H V  AL +  R+I ++ 
Sbjct: 3   SRNNPYRQERQRERSSGGYRTTEQVQAEQATADNDGEIIAGKHPVLEALRSG-REINKVW 61

Query: 73  ATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
             + +   L          H   V+    + +D + G+ A    +A   A       +  
Sbjct: 62  IAEGSQKHLTAPIVAEAKQHGIIVQFADKRKLDSMAGEVAHQGVIAQAAAYRYYEVEEIL 121

Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   +  L++LD + DPHN+G+ILR+A      G+I  KR S   +A ++K ++GA
Sbjct: 122 AAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGA 181

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            E++P  R++NL   ++ +   G    G    +++ + +   +  + L++G E KG+   
Sbjct: 182 AEYVPVARVTNLAQTIETLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +E    +  L M G + +LN S AA V +Y      
Sbjct: 242 IREKCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278


>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
 gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
          Length = 267

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 3/259 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RL 81
           L   +   K      +K +H  +     + G+H V  AL++ +            +   L
Sbjct: 4   LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECIAYDMDKGIPLEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +     A+            +R + L++VLD +
Sbjct: 63  RQIPDRGQGAEWIGVSHAVISKVSDTPSPQPVFAVVRKEARQWQDLIMRENGLVIVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R A A    G+I  +  +   +    +S  G+L H+P +    L   L +
Sbjct: 123 QDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLEGELL-SILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + K+   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIVDDAIRIPMPGQAE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V +Y      
Sbjct: 242 SLNAAMAASVLMYEALRQR 260


>gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
 gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
          Length = 246

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H V  AL    R I +LL    +               PV+  P   +D++V    
Sbjct: 2   IYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAREQRVPVRVEPRAALDRLV-PSG 60

Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+    A       D +         + LL++LD V DPHN+GAILR+A A    G+
Sbjct: 61  HHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEASGVQGV 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              +R +   ++V+AK+++GA++++P  R+ NL+  ++++   G     L +++ K   +
Sbjct: 121 FIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAPKAYTE 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +  +AL+ G EG G+RP  ++     AH+ M G + +LNVS +AA+ LY       +
Sbjct: 181 LDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQRRE 240


>gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49]
 gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49]
          Length = 263

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   KK+ +   KSR   +     + G   VS A+     +I  LL     +A L+   
Sbjct: 9   NNPLIKKINALTDKSRERKKQGVFIVEGAREVSLAIK-GHHEILTLLFCPE-IADLNALP 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144
           N+       +V      KI  +      +A+      +   L   + + L+++ +    P
Sbjct: 67  NVADSVEKISVSLDVYQKIAYRATTEGVIAIVKNSKTTLDALVFPKQNPLILIAEAPEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A   D ++                +S        + +++  D +  +  
Sbjct: 127 GNIGALLRTADAAHVDAVLI-ANPRTDLYNPNIIRSSVGCVFTNQVAMASSEDIIAFLKK 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                        +P   +      A+++G E  GL    ++ +T+  H+ M G I +LN
Sbjct: 186 NNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDSLN 245

Query: 265 VSNAAAVALYITQNHF 280
           VS AAAV L+  +   
Sbjct: 246 VSVAAAVLLFEAKRQR 261


>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
           25840]
          Length = 303

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEVTLSGNRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
 gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
          Length = 264

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+  S   K ++  +     + GVH V  A  + +     +  ++  +       
Sbjct: 10  QNERVKQWASLLDK-KYRDRTGLFIIEGVHLVQEAFKSSAAVQCVVYNSERGIPHELEQL 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        Q + K  G +      A+    L        RN+ L++VLD V DP 
Sbjct: 69  AREGGAEWVQATTQVMAKCTGTDTPPPVFAV-LEKLKRDDTALFRNNSLVVVLDGVRDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA A   D ++  K      +    +S  G+L H+P I      + L +  S 
Sbjct: 128 NVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIEADLA-ELLPEAQSK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +G S  +              L++G E +GL    +        + M G  ++LNV
Sbjct: 187 GIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVRLAVDESVIIPMQGEAESLNV 246

Query: 266 SNAAAVALYITQNHFA 281
           + AA V LY       
Sbjct: 247 AMAATVLLYEAVRQRK 262


>gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
          Length = 282

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 147/275 (53%), Positives = 186/275 (67%), Gaps = 6/275 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT------SQPENLFLYGVHTVSAALN 62
           S K  + KD+HYAKLRR  RD K   +   K R        +    + LYG+HTV AAL+
Sbjct: 2   SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP R+I ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              LDA+ +++L++VLD V DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D++AL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KT+ET T++A L MPG I++LNVSNAAAV+LY  +
Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276


>gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
 gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           M5-90]
          Length = 303

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
 gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
          Length = 286

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPTIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 252

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            E  +++G + V  AL    R I ++   + +L        + +       + VP + +D
Sbjct: 3   QELEYIFGKNPVLEALR-GKRPINKIWIAEGSLRGPMIQVLELSKEKKINTQIVPKKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V K+  HQG+  + A      +D               ++LD + DPHN+G+ILR+A 
Sbjct: 62  QMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHNLGSILRTAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G   +G  + 
Sbjct: 122 AVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEGLWFVGTDAK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++   +   +  + L++G+EG+G+    +E    +  + + G + +LN S AA++ +Y 
Sbjct: 182 GEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNASVAASLLMYE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VYRRR 246


>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
 gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
          Length = 303

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3
           str. Tulya]
 gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5
           str. 513]
 gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3
           str. 686]
 gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M163/99/10]
 gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           B2/94]
 gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M644/93/1]
 gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M13/05/1]
 gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M292/94/1]
 gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae
           5K33]
 gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           bv. 3 str. Ether]
 gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M490/95/1]
 gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94]
 gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99]
 gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
 gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
 gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
           23365]
 gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           ATCC 23457]
 gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
          Length = 286

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 248

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 10/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  AL         L+A   +    +            V+ V  Q +D+I    
Sbjct: 6   IEGRNPVLEALKAGREIDKLLIAKGAEEGSMKKIIGMAKDQNIIVQYVERQKLDQISESH 65

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A      ++ +  +         +++LD + DPHN+G+I+R+A A   DG
Sbjct: 66  A-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPHNLGSIIRTADAVGVDG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR +   +AV+AK+++GA+E++P  ++SN++  + K+   G    G     K+   
Sbjct: 125 IIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEKGVWVAGADMKGKQLHF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      +AL++G EG G+    +E    +  L M G + +LN S AAAV +Y       
Sbjct: 185 EADFKGALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQRI 244


>gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 286

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E
Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 303

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E
Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 255

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 10/255 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF 91
           M+   ++     +     + G H V AAL +  R + ++   + A               
Sbjct: 5   MRDGARRRSAQGEEAADLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146
            V+ VP   +D++    + HQG+  + AP     LD         + L++VLD + DPHN
Sbjct: 64  VVQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G
Sbjct: 121 FGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +  +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S
Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240

Query: 267 NAAAVALYITQNHFA 281
            AA V LY      A
Sbjct: 241 VAAGVLLYEAVRQRA 255


>gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
 gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
          Length = 257

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 7/243 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTI 101
           +P    +YG + V   L +    + ++    N    +L            P      + +
Sbjct: 13  EPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLKIPCGKARMEKL 72

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             I G        AL T+       +       +S LL++L  + DPHN+GAI+R+A A 
Sbjct: 73  TLISGTAKNQGVCALLTSVTFYTLDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAV 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D +I  +      SA + K+++GAL H+   ++ +L   L  +H  GF  +    +++
Sbjct: 133 AADSVIMIEGKGAPISATVHKASAGALSHMRVCKVKSLVKTLDLLHERGFSIVAADMEAE 192

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        L++GAEGKGL  +T++    +  + M G +++LNVS AA V LY   
Sbjct: 193 HNHTDIDWKRPTVLVMGAEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLYEAM 252

Query: 278 NHF 280
              
Sbjct: 253 RQR 255


>gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
          Length = 247

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V+A +   +  + ++      K+  AR        +   +  V  + +D + G
Sbjct: 6   IIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLDGMAG 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             + HQG+            L   LD +    LL+VLD V DPHN+GA LRSA AF    
Sbjct: 66  -NSRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K A GA + +PYI ++NL   L+++       IG+  +++  L 
Sbjct: 125 VIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAETNLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A +LGAEG+GLR  T+ET   +  + M G +++LNVS +  V LY  +   
Sbjct: 185 DVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEARRQR 243


>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 272

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 104/287 (36%), Gaps = 26/287 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+ + +E+I  LK  H                     +H          G+  +  A
Sbjct: 1   MK-ITSRSNERIKYLKKFHEK-------------------KHRDLENGFLAEGLKVIEEA 40

Query: 61  LNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L      +  LL T + L         D        +     Q +  +   +     LAL
Sbjct: 41  LQAGWE-VRMLLYTSDVLRHPRGVALLDKARATGTELWECEKQVLAVVTDTKTPQGALAL 99

Query: 117 ETAPLLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              P  S   L   R + L++VLD + DP N+G I+R+A A    G+IT +         
Sbjct: 100 IAKPEHSLDVLLQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPK 159

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++++GAL H+P          L+     G Q           L +   +   AL +G 
Sbjct: 160 VVRASAGALFHLPAFGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGN 219

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E +G        A  +  + MPG  ++LNV  AA++ +Y       K
Sbjct: 220 EARGCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLK 266


>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 309

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 11/269 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR NH   K+ QS  ++    ++     L G + V   L          +     A  
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL    +        +  VP   +D++ G   +HQG+AL+  P +    D          
Sbjct: 100 RLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGSL 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 279 VSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter
           turicensis z3032]
 gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter
           turicensis z3032]
          Length = 243

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L +   +  ++   K    +       A      PV+    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLESAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
          Length = 280

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 11/271 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--- 78
           +  +N  +  + ++  +  +   Q     + G ++V  ALN+ +  I Q+      +   
Sbjct: 7   RDMKNKYNVLRHKNKIENLKSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGS 66

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------ 132
               +         VK V  + +D+I  +  VHQG+  +  P     L+ + +       
Sbjct: 67  INTIFAIAKEKHIVVKKVDKRKLDRIS-QTGVHQGVIAKVIPYKYCELEDILDYASERGE 125

Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              +++LD + DPHN GAI+R+A      GII  KR +   +  + KS++GA+E++   +
Sbjct: 126 SPFIIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICK 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL   ++K+        G     +        N  IALI+G+EGKG+   T++    +
Sbjct: 186 VTNLNTIIEKLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKL 245

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M G I +LN S AA + +Y       K
Sbjct: 246 VKIPMMGNISSLNASVAAGMLMYEILKQKIK 276


>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 310

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 10/269 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NA 77
           A LR NH   K+ QS  ++       E   + G + V   L     +  ++  L T  + 
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
                          +  VP   +D++     +HQG+AL+  P      D          
Sbjct: 101 RVTESVARAADSGISILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLATALGSP 159

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 160 PPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 219

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     ++     D + +++G+EGKGL    ++    +
Sbjct: 220 ATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLVRQNCDEV 279

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 280 VSIPMAGQAESLNASVAAGVVLAEIARQR 308


>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 265

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 111/282 (39%), Gaps = 23/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   ++  +  +K  H                     ++       F+ G+  V+ A
Sbjct: 1   MNYIQSSQNSTLKEIKALHLK-------------------KNRDSQGLYFVEGIRFVNDA 41

Query: 61  LNNPSRKIFQLLATK-NALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALE 117
           ++N       +++ K   L                +  VP +   ++   +   QG+   
Sbjct: 42  IDNGQVISKVIVSDKLEGLNGGSELIEKVKGVCSDISLVPEKLFKEVSDTQ-TPQGILAV 100

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    + +     +++LD + DP N G I+R+A A     ++ +K      S  + 
Sbjct: 101 LEKNQFDFQEVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL 160

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++ H+P     N+T+ +Q +   G++ I      K    QE    + A+I+G E 
Sbjct: 161 RSTMGSVFHVPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGNEA 220

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+  +T   A S+  + MPG  ++LN S AA++ +Y     
Sbjct: 221 NGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQ 262


>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 258

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +   NQK++   +       G      A   P   + Q+      ++R     
Sbjct: 6   SNAKIKNVMQLNQKAKARREQGLFVAEGRKMFLEA---PESWVSQVFV-SETVSRDGELM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +    +P + V      ++   +     L +   P  S        + L+MVL+ + DP 
Sbjct: 62  SQAEKYPCEIVKDSVFRQMCDTKTPQGILTVLKLPSWSEEEVLAGKNPLVMVLEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ILR+       G+  TK      +  + +S  G++  +P++ + ++    +K+   
Sbjct: 122 NAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVEDVVSLEKKLKEK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G ++       +   +QE      A  +G EGKGL  +  E A  +  + M G +++LN 
Sbjct: 182 GIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIRIPMCGKVESLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           + A+ + +Y       +
Sbjct: 242 AMASGILMYEAARQRRE 258


>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
           MBIC11017]
          Length = 309

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 15/289 (5%)

Query: 5   SKKKSEKIF--SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           SK +  +    S K  H            +++S +++   + + +   +YG H+V +AL 
Sbjct: 14  SKPRKPQRSYSSAKKPHRQSTSSRPPQKPRIRSKDKEPAQSEEEQGDLIYGRHSVLSALE 73

Query: 63  NPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +  R + ++        +       +        +  V  + ++++  ++A HQG+A + 
Sbjct: 74  H-QRSLNRVWVVSRLRYDPRFHSLLNQAKSQGTIIDEVDHRRLNQLT-QQATHQGIAAQV 131

Query: 119 APLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A      +              +++  D + DPHN+GA++R+A A    G+I  +R +  
Sbjct: 132 AAYEYLDISTLIEQANAATPKPVIIAADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAG 191

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            ++V+AK A+GALE +   R+ NL   L+++   GF   GLS+ + + +      +   L
Sbjct: 192 ITSVVAKVATGALETLAIARVVNLNQGLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVL 251

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++GAEG GL   TQ     M  + + G   +LN S A  +ALY      
Sbjct: 252 VIGAEGPGLSVSTQHHCDQMVSIPLQGKTASLNASVATGMALYEVYRQR 300


>gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13]
 gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
 gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
          Length = 286

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 141/288 (48%), Positives = 186/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRARKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 SGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
 gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
          Length = 258

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +   NQK++   +       G      A   P   I ++   ++ L   +   
Sbjct: 6   QNTQVKNIIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKIYVAESMLEDEEVMK 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +   F    V      ++   +     L +   P             LLMVL+ + DP 
Sbjct: 63  KV-RRFSWDAVENGVFRQMCDTQTPQGILTVLRQPSYELEDLLKEEKPLLMVLEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R+       G+  TK      +  + ++  G++  IP+  + ++    QK+   
Sbjct: 122 NAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVEDVVSLKQKLQGR 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +      K   ++E   D  A ++G EGKGL  +  + A  +  + M G +++LN 
Sbjct: 182 GIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIRIPMCGQVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + AA + +Y      
Sbjct: 242 AMAAGILMYEAARQR 256


>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
 gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
          Length = 309

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 11/269 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR NH   K+ QS  ++    ++     L G + V   L          +     A  
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL    +        +  VP   +D++ G   +HQG+AL+  P +    D          
Sbjct: 100 RLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGSP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 279 VSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
 gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
          Length = 263

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 25/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +        L  K        +         +  V  + + KI         +     
Sbjct: 43  LQSGGTPKQVYLPEKKQQHIEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L +  +    +VL+ V DP N G ILRSA A     I+ +       S  + ++
Sbjct: 102 IPQQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +       L+  ++      + T     +          +   A + G EG G
Sbjct: 159 GMGAHFLLSIFSRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQPCAWVFGNEGSG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    +E A +   + M G  ++LNV+ AA V L+       
Sbjct: 217 VSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258


>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
 gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
          Length = 245

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L+G+H V+ AL   +++I ++L  K   +A  +   D  L     ++ V  + ++++V  
Sbjct: 6   LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRLIDTALDLRIRIEQVSKRELEELVKG 65

Query: 108 EAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 +AL               LD +     L++LD V DPHN+GA LR+A A     
Sbjct: 66  AVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +A  AK A GA E +PY+ ++NL   L+ +   G  T G + ++   + 
Sbjct: 126 VVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLDIY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +ALI+GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 186 QANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244


>gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 270

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 111/285 (38%), Gaps = 28/285 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  H                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPF-------PVKTVPPQTIDKIVGKEAVHQGL 114
                 I  ++ ++ A  +                   V  VP +  + I         L
Sbjct: 48  EYQIECINLVIFSQQAKEKYQEFFEECKYLLQDGKIKRVIEVPDKLFEYITTTSTPQGIL 107

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A          ++ ++N + +++ D++ DP N+G ++R A AF  D ++TTK      + 
Sbjct: 108 AECIFVDK--DINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G
Sbjct: 166 KTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIG 225

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 226 NESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270


>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 254

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 105/277 (37%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     + G H V  A
Sbjct: 1   MKRIQSTKNPQVKEWKKLLTK-------------------KGQEKMGLFLIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + +  + +L+  +       W+       PV  V  + +  I   E   QG+A     
Sbjct: 42  LKSHA-PLVELIVDEKKEIPPSWN---AGHLPVTIVTEEVMKAISDTE-TPQGIAAVCEQ 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +D  + + LL+  D V DP NIG ++R+A A   D +I  +  +   +  + ++ 
Sbjct: 97  FSYGDIDWTQANVLLI--DAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRAT 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P IR +      +              ++ +           AL++G EG G+
Sbjct: 155 QGSLFHLPIIRGNLREWIERLCEKNVAIYGTA-LENGEDYRHIKPARPFALLVGNEGSGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K  +  T   ++ + G  ++LNV+ AA + LY  Q
Sbjct: 214 HKKLLQMTTKNLYIPIYGQAESLNVAVAAGILLYHLQ 250


>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 266

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLD 82
           ++   + ++    K R         + GV  V  AL +       I+     +N   +  
Sbjct: 7   DNPRIRYLKHLA-KRRFRETEGKFIIEGVRFVEEALASAMSVEAVIYSAKLFQNNRGKEL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMVLDH 140
            +       P   V    ++ +    A  QG+      + +    +      QLL+++D 
Sbjct: 66  LECIYKSNVPFWEVTEPILESLSD-TATPQGVVAVIKSVPTGLQEILTRVKKQLLVLVDG 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R++ A   D +I ++      +    ++  G+L H+P I       A +
Sbjct: 125 IQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEPVQAAE 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G + +       +P+        +AL++G+E  G+    +       ++ MPG  
Sbjct: 185 LLLQAGIRLVVGMPQDCQPVYSVDLTGPVALVVGSEANGVSEGLKRLPAIPVNIPMPGHA 244

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN + AAA+ LY      +
Sbjct: 245 ESLNAAIAAAIMLYEAVRQRS 265


>gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
 gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
          Length = 264

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 9/258 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH- 89
           ++ +  +  S+  ++      +G+H V A +     ++FQL   K A  RL     L   
Sbjct: 3   RRGKQRSSGSKRGTKSPQFL-FGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQALATQ 61

Query: 90  -PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVN 142
              P + V  Q +D  V        +A   +  L         LD V N  L++VLD V 
Sbjct: 62  LGLPTQYVERQQLDDWVDGARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVLDGVT 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GA LRSA     D +I  K  S   +AV  K A GA E  P+I+++NL   L+ +
Sbjct: 122 DPHNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLARTLKGL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +GL+    + L +   +  +AL++GAEG GLR  T+E+   +  + M G + +
Sbjct: 182 AERGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGGSVSS 241

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS AA V LY      
Sbjct: 242 LNVSVAAGVCLYEVVRQR 259


>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 270

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 98/263 (37%), Gaps = 7/263 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALA 79
           L R +   K ++    + R   +     + GV  V  ALN+       +      +    
Sbjct: 2   LSRQNSRIKYLRRLGSR-RFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITETRRG 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMV 137
               +       P+  V      ++ G     QG              L A     LL++
Sbjct: 61  EALLEKASFQGVPLVEVDESLFGELAG-TTTPQGALAVVKKGKVSLEDLQAGGEPALLVI 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V DP N+G I+RSA A    G+I  K  +   +A   ++  GA+ ++P ++     +
Sbjct: 120 VDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVE 179

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+  +   G + +       K +         AL+LG+E  G              + MP
Sbjct: 180 AMTYLKQLGIKAVAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMP 239

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G  ++LNV+ ++AV L+      
Sbjct: 240 GRAESLNVAVSSAVLLFEAVRQR 262


>gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 276

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 135/274 (49%), Positives = 182/274 (66%), Gaps = 5/274 (1%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           K  + ++SHYA+LRR +RD K   S +    +K   + Q   + LYG+H+V AAL NP R
Sbjct: 2   KEKTSQNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKR 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +  L  T+NAL RL+   +  +P  V    P+ +D +VG EAVHQG+ LET PL    L
Sbjct: 62  ILKCLYVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKL 120

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVA     +ITT R+SP ES VLAK+ASGALE 
Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEM 180

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL +ALQ++H  GF + GL S+  KPLE  +  +KIAL+LGAEGKGLR KT+E
Sbjct: 181 IHYITVRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRE 240

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++  L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 241 TVCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D            L++LD V DPHN+GA LR+A     
Sbjct: 62  AEDAVHQGIVAKVKEGRKYQENDLPAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K A GA E IP I ++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 17/294 (5%)

Query: 4   ISKKK--SEKIFSLKDSHYAKLRRN---HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           IS  K   +K  S+ +S       N   +++ K     N KS    +     + G + V 
Sbjct: 9   ISSGKFMEDKDKSVTESKGKAKSYNQVKNKNKKDNMVGNDKSTSAIEEREDIVIGRNAVI 68

Query: 59  AALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            AL    R I  L  + + L    +        +   +K V  + +D + G E VHQG+ 
Sbjct: 69  EALR-GERTIEALYISNSKLEGSIKTIVGLAKENKILIKEVDKRKLDSMCGGE-VHQGVI 126

Query: 116 LETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
            +  P     +       +    +  +++LD V DPHN+G+I+R+A  F   GII  KR 
Sbjct: 127 AKVTPYKYSEVSDILDLAEKRGEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIILPKRR 186

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S S  + KS+ GA+EH+   +++NL   ++++   G    G    +++   Q      
Sbjct: 187 SASVSTTVYKSSVGAIEHVKIAKVTNLNSTIEELKEKGIWIYGADIRAEEYSYQVDFGGP 246

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+I+G EG+G+   T E    +  + M G I +LN S A  + +Y       K
Sbjct: 247 CAVIIGNEGRGISKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 300


>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 303

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 187/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 18  MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 72

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQ
Sbjct: 73  GLHTVRAAVENPQRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQ 132

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 133 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 192

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 193 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 252

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 253 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6
           str. 870]
 gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4
           str. 292]
 gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9
           str. C68]
 gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
           str. 9-941]
 gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
          Length = 286

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 187/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR HRD K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
          Length = 263

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 25/281 (8%)

Query: 1   MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           M +  I+  ++EK+                  K+ +  + + +   +  ++ + G   + 
Sbjct: 1   MEIHQITSARNEKV------------------KRWRKLSTR-KGREEFGSILIEGEKLLK 41

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
            A     +    +++ +    R   D +      V  + P T  ++V  +   QG+A E 
Sbjct: 42  EAARAGWQVRSVIVSDEG--IRGLEDLSYLDGVSVYALYPSTFAQLVDTQ-TPQGIAAEV 98

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +     +R  + +++LD + DP N+G ILR+A A     +          +  + +
Sbjct: 99  VVPENKEGYRIRGEEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVR 158

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SA G+L      R+       +      +         +   +      + A++LG EGK
Sbjct: 159 SAMGSLFRTRIRRVDLREAIPELKKQGYWVVGTSPRAERAHFDC-HYPKQTAILLGNEGK 217

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+  +          + MPG +++LNVS  A + L+     
Sbjct: 218 GISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILLFELLRQ 258


>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 257

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 107/254 (42%), Gaps = 4/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    +KS+  ++     + G+     A   P  +I ++  ++    R   + N
Sbjct: 7   NAQVKELLQLQKKSKVRNERNIFLVEGIKMFFEA---PRNRIEKVFISETLFDRKKQELN 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L     V+ +  +    +   +     L +             +  + LM+LD++ DP N
Sbjct: 64  LD-GLKVEILSDKVFSHVSDTKTPQGILCIMRQKKTKLEEIFAQKPEHLMILDNLQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+A      GII +K      +    +S  G++  +P++ + +L + ++++    
Sbjct: 123 LGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVEDLENTIEEVKKQD 182

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +        K   ++E      A ++G EG GLR +  E A     + M G +++LN +
Sbjct: 183 IKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKIKMHGEVESLNAA 242

Query: 267 NAAAVALYITQNHF 280
            A+++ ++      
Sbjct: 243 IASSILMFEVCRQR 256


>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 262

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 111/257 (43%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KS+  ++     + GV         P  ++ ++  ++    +   + 
Sbjct: 6   SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVND 143
           N       ++ +      + V      QG+            D        L+VLD++ D
Sbjct: 63  NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GII +K      +  + +S  G++  +P++ + +L +A+ K+ 
Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G  T     D K   ++E    K A ++G EG GLR +  + A +   + M G +++L
Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRIPMQGQVESL 241

Query: 264 NVSNAAAVALYITQNHF 280
           N + A +V ++ T    
Sbjct: 242 NAAIATSVLMFETARQR 258


>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 246

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 30/276 (10%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+  K+EK+ S K  H                   + +   +     + G+H +  AL 
Sbjct: 1   MITSIKNEKVKSWKKLH-------------------RRKERLKTNTFLIDGIHLIQEALK 41

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +    I +L+  +          N     PV  V    + +I   +     +A+    + 
Sbjct: 42  SNW-VIQELIVVEGY-----ELPNDAKDVPVAYVSENVLKEISQTQTPQGVIAVVEMNIP 95

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               D    + L+++LD + DP N+G I+R+A A   D ++         +  + ++  G
Sbjct: 96  KVQED----NNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQG 151

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ HIP    +   +    + + GF  +  +        +   ++K+ LILG EG G+ P
Sbjct: 152 SIFHIPIYTATLEQEIH-MLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                A    ++ + G  ++LNV  AA + +Y  + 
Sbjct: 211 SLLNKANQRINIPIYGKAESLNVGIAAGILMYHLKK 246


>gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           wasabiae WPP163]
 gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           wasabiae WPP163]
          Length = 243

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +            D         +  L++LD V DPHN+GA LR+A     
Sbjct: 62  AEDAVHQGIVVKVKEGRKYQENDLPAMLDNIETPFLLILDGVTDPHNLGACLRNADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
 gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 102/257 (39%), Gaps = 6/257 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---W 83
           ++  K++ +  +K +   + +   + G+         P+ ++ +   +++   R      
Sbjct: 7   NQKVKRLVNLRKKRKARDEEKVFLVEGIRMFREV---PAERLLEAYVSESFYKREGGTVS 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                     + +     D +   +     L +      +    A      ++VLD++ D
Sbjct: 64  RVLEGCAVRPEILSDTVYDYVSDTKTPQGVLCVVRQKEYTFAEAAGGERAHILVLDNLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A      GI+ +       +    +S  G++  +P  R  +LT+A+++M 
Sbjct: 124 PGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKDLTEAVRRMK 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G  T     D     ++       A  +G EG GLR +    A +   + M G +++L
Sbjct: 184 ESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRIPMEGEVESL 243

Query: 264 NVSNAAAVALYITQNHF 280
           N + AAAV ++      
Sbjct: 244 NAATAAAVLMFEAARQR 260


>gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 245

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
             F+ G H+V  AL +  R I ++   +NA  +           H   V+TV  + +D++
Sbjct: 2   EEFIGGKHSVLEALRSG-RTINKIWIAENAGKQQAGSVLSEAKKHGIIVQTVDRRKLDQM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+  + A     +++              +++LD + DPHN+G+ILR+A   
Sbjct: 61  AEGI-QHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +A ++K+++GA+E++P  R++NL   ++++   G    G   +  
Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +      IAL++G E KG+    +E    +  L M G I +LN S AA V +Y   
Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVA 239

Query: 278 NHFA 281
              +
Sbjct: 240 RQRS 243


>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 255

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 10/255 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF 91
           M+   ++     +     + G H V AAL +  R + ++   + A               
Sbjct: 5   MRDGARRRSAQGEEAVDLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHN 146
            V+ VP   +D++    + HQG+  + AP     LD V         L++VLD + DPHN
Sbjct: 64  VVQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G
Sbjct: 121 FGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +  +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S
Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240

Query: 267 NAAAVALYITQNHFA 281
            AA V LY      A
Sbjct: 241 VAAGVLLYEAVRQRA 255


>gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
 gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
          Length = 263

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 87/282 (30%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +S+   +     L GVH +   
Sbjct: 4   MKLITSAQNEQL------------------KHLSKLLTQSKARREYGQTVLEGVHLLQVY 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119
           L          L           +         +  V  + + KI         +     
Sbjct: 46  LEAGYTPKQVYLPESKNTHPEIRNLISSLDEDGITWVGNEALSKITS-LNDADDVMTWIE 104

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L    +    +VLD + DP N+G +LRSA A     I+         S  + ++
Sbjct: 105 IPPQGDLPLSGDC---VVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRA 161

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I            +        L   +   L Q   N   A + G EG G
Sbjct: 162 GMGAHF-LLDIYSRVFLPHWLDAYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSG 220

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +  E       + M G  ++LNV+ AA V L+       
Sbjct: 221 VSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQRI 262


>gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAIS-K 76

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
 gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
          Length = 266

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 3/259 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           L   +   K      +K +H  +     + G+H V  AL++ +          K     L
Sbjct: 4   LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECVAYDVDKGIPQEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +  Q  A+            +R + +++VLD +
Sbjct: 63  RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGMVVVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P +    L   L +
Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLEGDLL-SILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + ++   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V +Y      
Sbjct: 242 SLNAAMAASVLMYEALRQR 260


>gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 243

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L++LD V DPHN+GA LR+A     
Sbjct: 62  ADDAVHQGIVAKVKEGRKYQENDLPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A      PV+    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
          Length = 258

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +   NQK++   +       G      A   P   I ++   ++ L       
Sbjct: 6   QNTQVKNVIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKVYVAESLLDDE-EIM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                F    V      ++   +     L +   P         + + LLMVL+ + DP 
Sbjct: 62  QKAGRFSWDAVENSVFRQMSDTQTPQGVLTVLRQPSYQLEDLLKQEAPLLMVLEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R+       G+  TK      +  + ++  G++  IP+  + ++    QK+ + 
Sbjct: 122 NAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVEDVVLLKQKLQNC 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +        K   ++E   +  A ++G EGKGL  +  + A  +  + M G +++LN 
Sbjct: 182 GIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + A  + +Y      
Sbjct: 242 AMAGGILMYEAARQR 256


>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
 gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
          Length = 263

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 25/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH + + 
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQSY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +        L  K        +         +  V  + + KI    +    +     
Sbjct: 43  LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS-LSDADDVMTWID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L +  +    +VL+ V DP N G ILRSA A     I+         S  + ++
Sbjct: 102 IPKQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +       L+  ++      + T     +          +   A + G EG G
Sbjct: 159 GMGAHFLLSIFSRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQTCAWVFGNEGSG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    +E A +   + M G  ++LNV+ AA V L+       
Sbjct: 217 VSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258


>gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942]
          Length = 258

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +Q ++   Q     L G H +  A+      +         +   + 
Sbjct: 4   SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNWPLLQVCATPACRINTRNS 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            +      P +TV    +  +           +      +        S L   ++ + D
Sbjct: 63  GSRAIQAAPEQTVSDDLLAYLCTTVNP---DGVVANRSTAAPASTAHFSLLADAVETLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A   DG+  T      +   + ++++G    +P    ++L   L+   
Sbjct: 120 PGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQ 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +     +   L Q        L+LG EG GL P     A S   +     +++L
Sbjct: 180 QQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESL 239

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ LY  +   
Sbjct: 240 NVAIAAALLLYEARRQR 256


>gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 259

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  +  ++   +     L G H + AA       I  L  T     R     
Sbjct: 6   QNPLVKQIRQLHT-AKARREEGLFILEGTHLIEAACAVNWE-IITLCCTPQWQERHPELW 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L      +    Q  D+++             A         V  + L +VL+ V DP 
Sbjct: 64  ELAAKTADR--TEQVSDRLIVAMTTTVNPDGVVAIARRQDQTPVPITSLGLVLETVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A   +G+  +          + ++++GA   +P    S+L   L      
Sbjct: 122 NLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSNSQKQ 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +   +D+     +       A++LG EG GL P     A     + + G +++LNV
Sbjct: 182 GIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADYHIRVPLLGNVESLNV 241

Query: 266 SNAAAVALYITQNHF 280
           +  AA+ LY  Q   
Sbjct: 242 AICAALILYEAQRQR 256


>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 261

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G          P  +I +L  +++  A+   + 
Sbjct: 6   SNIQVKELLRLQKKSREREKEGVFIVEGPRMAEEI---PRERIVKLYVSESFQAKCVKEK 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N         V   T+   V      QG+      +     D +  +  ++VL+++ DP 
Sbjct: 63  N-DRFIQEAEVMSDTVFAHVSDTKTPQGILAVVRRMEYTAEDILGETPHVLVLENIQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I R+A A    GI+ +K      +  + +S  GA+  IP+I   +L   + ++   
Sbjct: 122 NLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDDLKGTIDELKRE 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G          +   + E      A ++G EG GL  +T   A     + M G  ++LN 
Sbjct: 182 GITVYAAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILIPMEGGAESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + A+AV ++      
Sbjct: 242 AVASAVLMFEAGRQR 256


>gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
 gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
          Length = 247

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTID 102
            E  +++G+H V A L   S +I +L   +    +   +  L         KTVP + +D
Sbjct: 2   SEEHWVFGIHAVEALLQGQSNRIEELWLQQGRNDKRINELQLHARQVGVKCKTVPREELD 61

Query: 103 KIV-----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           K V     G  A  +         L   LD + +  LL++LD V DPHN+GA LR+A A 
Sbjct: 62  KQVDGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  K  S   +A + K A GA E +PYI+++NL   ++ +   G    G + +++
Sbjct: 122 GVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTAGEAE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + Q      +AL++GAEGKG+R  T+E    + +L M G + +LNVS A  V L+   
Sbjct: 182 QSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEAV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 243

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L++LD V DPHN+GA LR+A     
Sbjct: 62  ADDAVHQGIVAKVKEGRKYQENDLPALLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
 gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
          Length = 263

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 94/283 (33%), Gaps = 27/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 4   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALET 118
           L +      Q+   +     L+            +  V  + + KI         +    
Sbjct: 46  LQSGGTP-KQVYLPEKKQQHLEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWI 103

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  L +  +    +VL+ V DP N G ILRSA A     I+         S  + +
Sbjct: 104 DIPQQAGLPSDGDC---VVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWSPKVLR 160

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +       L+  ++      + T     +          +   A + G EG 
Sbjct: 161 AGMGAHFLLSIFNRVELSAWMETYQHQIWATALGGRNIGLYEMD--LSQSCAWVFGNEGS 218

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+    +E A +   + M G  ++LNV+ AA V L+       
Sbjct: 219 GVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 261


>gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
          Length = 259

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 103/280 (36%), Gaps = 27/280 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+ ++++ + S++  H+ K R                       +L L G H +  AL 
Sbjct: 2   IITSRQNQLVRSIRKLHHRKYR---------------------QGHLLLEGTHLIQEALA 40

Query: 63  NPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +           A +   +   W   L        V  + +  +              A 
Sbjct: 41  SGYHLSVVCYTSAWQAKQSPTFWQRLLHRSDRAVEVSEEVLAALC----TTTTPDGVVAV 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L  +    L + L  + DP N+G I+R+A A   +G++ +          + +++
Sbjct: 97  ADYTPLPTLPLQSLGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRAS 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P   +++    L+   + G+Q +     +     Q        L++G EG+GL
Sbjct: 157 AGQWFRLPMQTVTDGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGL 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            P  Q+ + +   +     +++LNV+ A AV LY      
Sbjct: 217 PPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQR 256


>gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 243

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R           H   ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAHGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L++LD V DPHN+GA LR+A     
Sbjct: 62  AEDAVHQGIVAKVKEGRKYQENDLPAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 261

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 98/261 (37%), Gaps = 7/261 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79
            +++   K++++  Q+ R        F+ G+  V+ A+   +  I QL+   +      A
Sbjct: 4   SKHNPAIKQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLLRSQFA 61

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +   +       P+  V  +    +  K+      A+      S            + L+
Sbjct: 62  QDLVEQQRQQAIPILEVSGEVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIALN 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            ++DP N+G ILR+  A    G+I     +        +++ G L     +  +   +  
Sbjct: 122 AISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLF-SQRLVKATWAEFS 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           Q     GF  +G +  +            + L++G+E +GL  + Q    ++  + M G 
Sbjct: 181 QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ 240

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN++ A  V LY      
Sbjct: 241 ADSLNLAVATGVLLYEILAQR 261


>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 260

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 106/281 (37%), Gaps = 26/281 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I  K +  I  ++                      K ++ +Q     + G   V  A
Sbjct: 1   MNKIESKDNSLIKDIRKL-------------------SKKKYRTQEGKFLVEGFRFVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     + L++  +      ++    +     V  V    + ++         LA+  
Sbjct: 42  LKSTFEVPYVLISENSNEKCESFNIYDLIQENTKVYLVRDDILKELCDTNNPQGILAVV- 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  ++        +++D + DP N+G I+RSA A    G+ITTK      +    +
Sbjct: 101 ---NNKVMEIEDQKGFYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++  IP I  +N    L+ + S GF+ +  S D++          K  + +G EG 
Sbjct: 158 STMGSIFKIPIIEDNNF-QILKILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGN 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+     E       + MPG  ++LN   AA++ +Y     
Sbjct: 217 GVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQ 257


>gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           N1568]
          Length = 250

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I+ K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
 gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
          Length = 263

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 99/257 (38%), Gaps = 6/257 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--D 84
           +   K + +  +K +   +     + G+         P   + ++ A+++   +     D
Sbjct: 7   NAKVKHLANLKRKRKLRDEEGVFLVEGIRMFRE---TPKMLLKEVYASESFYKKERRMTD 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVND 143
             L        +   T+   V      QG+      L     +A       L+VL+ + D
Sbjct: 64  EALKGSGAYLEILSDTVFGYVSDTKTPQGILCVVKQLDYRLEEAAAGRAAHLIVLNRLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GI+  +      +    +S  G++  +P+    +L   + ++ 
Sbjct: 124 PGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQDLKKDIGRLK 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G        + ++  ++       A ++G EG GL  +  + A +   + M G +++L
Sbjct: 184 DKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKIPMKGRVESL 243

Query: 264 NVSNAAAVALYITQNHF 280
           N + A++V ++      
Sbjct: 244 NAAIASSVLMFEAARQR 260


>gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
 gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
          Length = 253

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
               ++YG+H V  AL     ++  +   +    +           +    + VP + +D
Sbjct: 2   SNLEWVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRLMQLCKKNGVRFQVVPRKVLD 61

Query: 103 KI---VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILR 152
           ++     +  VHQG+  +     +          +A+  + L+++LD + DPHN+GA LR
Sbjct: 62  QLFAKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G    G 
Sbjct: 122 SADAAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGT 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++   L         A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V 
Sbjct: 182 AGEATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVC 241

Query: 273 LYITQNHFA 281
           LY       
Sbjct: 242 LYEAVRQRT 250


>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 262

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KS+  ++     + GV         P  ++ ++  ++    +   + 
Sbjct: 6   SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVND 143
           N       ++ +      + V      QG+            D        L+VLD++ D
Sbjct: 63  NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GII +K      +  + +S  G++  +P++ + +L +A+ K+ 
Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G  T     D K   ++E    K A ++G EG GLR    + A +   + M G +++L
Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRIPMQGQVESL 241

Query: 264 NVSNAAAVALYITQNHF 280
           N + A +V ++ T    
Sbjct: 242 NAAIATSVLMFETARQR 258


>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
 gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
          Length = 266

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 3/259 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           L   +   K      +K +H  +     + G+H V  AL++ +          K     L
Sbjct: 4   LSPQNARAKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECLAYDVDKGIPQEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +  Q  A+            +R + L++VLD +
Sbjct: 63  RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGLVVVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P +    L   L +
Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLEGDLL-SILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + ++   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V +Y      
Sbjct: 242 SLNAAMAASVLMYEALRQR 260


>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
           23445]
          Length = 286

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 185/288 (64%), Gaps = 13/288 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS--------QPENLFLY 52
           M   +  ++ K     DSHYA+LRR H D K         +               + LY
Sbjct: 1   MTDQNSPRTPK-----DSHYARLRRQHHDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLY 55

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AA+ NP RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQ
Sbjct: 56  GLHTVRAAVENPQRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQ 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ +E  PL +  L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E
Sbjct: 116 GVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQE 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + VLAK+ASGALE I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+
Sbjct: 176 TGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALV 235

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAEGKGLR KT+ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 236 LGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
 gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
          Length = 247

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104
            +   +YGVH V A L +  R++ +L   +     R+     L     +     +  +  
Sbjct: 2   SDLERIYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIAVGQRERRELD 61

Query: 105 VGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              E VHQG+  E +P            LD      LL+VLD V DPHN+GA LR+A A 
Sbjct: 62  EWAEGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S + +A + K A GA E +P + ++NL   L+K+   G  T+G + + +
Sbjct: 122 GAQAVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L          LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+   
Sbjct: 182 QELYGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAV 241

Query: 278 NHFAK 282
              ++
Sbjct: 242 RQRSR 246


>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
 gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
           MLS10]
          Length = 251

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 107/277 (38%), Gaps = 28/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I+  ++ +I + K  H                     +   +    F+ G H +  A
Sbjct: 1   MDVIASVQNPRIKAWKKLHTK-------------------KGRDKSGLFFIEGDHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +    I +L+  +N      W+       PV  V    ++++   E            
Sbjct: 42  IRSAIT-IKELILEENQSLPEAWE---DPEVPVVWVTQPVLNELCETETPQG---FAAVC 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P ++   +    + +D V DP N+GA++R+A A    G++         +  + +S 
Sbjct: 95  EKPPLVNLPLDDGRFLFIDGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L HIP  ++    +   ++       +  +S            D  ALI+G EG G+
Sbjct: 155 QGSLFHIPVQKMDL--EEAVEICKEANVPVFGTSLQGSTFNALEPQDTFALIMGNEGSGV 212

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +  E      ++ + G  ++LNV+ A  + LY  +
Sbjct: 213 RARLLEMTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249


>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
 gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 259

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              L +++   K+ +   +K ++  +     + G   V  A+ + S  I  +   + AL 
Sbjct: 2   EKILSKDNNLIKETRKLKEK-KYRIEKGLFLVEGFRFVEEAVKS-SFIIKSIFIDEKALE 59

Query: 80  RLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           +L             +  +P Q    I   E          A + +            + 
Sbjct: 60  KLSDYNIETERIHANIYIIPSQIFKTISTTETPQG----IIAVVENKEFAVKNEKGFYIY 115

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D V DP N+G I+R+A A    G+I ++      +    +S  G++  IP I   ++  
Sbjct: 116 ADKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFRIPVILDKDMNK 175

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             +   + GF+ I  S D+ K       +    + +G EG G+  +    +     + MP
Sbjct: 176 LKELK-AQGFKLIVSSLDTNKNFFDVDLSQMSIIAVGNEGNGVSDELYNLSDEKVKIPMP 234

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G  ++LNV+ AA++  +       K
Sbjct: 235 GGAESLNVAVAASIMAFEAVRQTFK 259


>gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 249

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            ++G H V++ L + +  + +L        R   D           +       +DK+VG
Sbjct: 5   VIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDKMVG 64

Query: 107 KEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A+     L+  LD     +  + LL+VLD + DPHN+GA LR A +     +
Sbjct: 65  TRRHQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A + K ASGA E +PYI ++NL   L+++       +G + D+++ L +
Sbjct: 125 IAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEESLYE 184

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +A ++G+EG+G+R  T+E    +  + M G +++LN+S A+ + LY  +    
Sbjct: 185 PDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARRQRI 243


>gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 251

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99
               +   +YG + V  AL    R + ++L  + A  RL     +   P   PV+ V   
Sbjct: 5   RDSEKQTVIYGRNPVREALR-GGRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERP 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +D++      HQG+A   +     T++      + L++VL+ + DP N+GAILR+A A 
Sbjct: 64  LLDRLTD-GGAHQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG +   R +   +   AK+A+GA+E++P  R++N+   L++    G   +G   D  
Sbjct: 123 GVDGAVVPSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGP 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G E  GL    +    S+  + M G + +LN S AAA+ +Y   
Sbjct: 183 VSYWDADLGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAV 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638]
 gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 244

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 8/243 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLASRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A               L A  ++   ++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  +   +A   K A GA E++P IR++NL   ++++       +G + ++   
Sbjct: 122 HAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 VYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FAK 282
             K
Sbjct: 242 RTK 244


>gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech586]
          Length = 244

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASGIAVQVASRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
 gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
          Length = 323

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 16/287 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S  +S ++        ++    HR    +     K       ++  +YG H V +AL   
Sbjct: 30  SSIRSPRVGERDKKPVSRGTSPHRIDPHVSPVASKPP----EDSDLIYGRHPVLSALE-G 84

Query: 65  SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            R + ++        +            +   +  V P+ +D+I    A HQG+A + AP
Sbjct: 85  ERGLNRIWITTRLRYDHRFHHLLLQAKENGTVIDEVEPKRLDQITD-RANHQGIAAQVAP 143

Query: 121 LLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                L             +++V + + DPHN+GAI+R+A A    G++  +R +   ++
Sbjct: 144 HDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITS 203

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + K A+GALE+    R+ NL+ AL+++   GF   G ++   +PL     +  I L++G
Sbjct: 204 TVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATTGSEPLHTVKFSGPIVLVIG 263

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +EG+GL   TQ +   +  + + G   +LN S AA +ALY      +
Sbjct: 264 SEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRS 310


>gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 245

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A   +  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLHQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 315

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L G ++V  AL       K+F     K    R               V    +D +    
Sbjct: 76  LEGRNSVMEALKANRTINKLFIAKGEKEGSIRQIIALARQKGIITTEVDKIILDGMSTTR 135

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    A      +D              +++LD ++DPHN GAILR+A A    G
Sbjct: 136 S-HQGVIAYVAVKDYVEVDDILAVAQENGEPPFIIILDEISDPHNFGAILRTANAVGAHG 194

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+E++P  R++N++  ++ +       +G  S  +K   
Sbjct: 195 VIIPKRRAIGLTSTVAKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFY 254

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      IAL++G+EG+G+    +E    + ++ M G I +LN S AAA+ +Y       
Sbjct: 255 ESDLKGPIALVVGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQRG 314

Query: 282 K 282
           K
Sbjct: 315 K 315


>gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 273

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 5/265 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                + +++ K +    +KSR+  +  +  + G   V+ AL      +      +    
Sbjct: 3   KKITSQQNKEIKWLLQLQEKSRNRRKENSFIVEGKREVNLALKGGYLPLHLYFVPELIDF 62

Query: 80  RLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLL 135
           +   +    +      +  +  +  DKI  + +    LA+          L       L+
Sbjct: 63  QEVLEMAKANEHEAAEITEINKEVYDKIAYRGSTEGLLAVFRNIEHPVENLSFEHPFPLI 122

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V +    P NIGAILR+A A + D +I     +   +  + +S+ G+L        +  
Sbjct: 123 LVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGSLFTNKIATGTTS 182

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + +Q + +        +  + KP       +  A+I+G E  GL  +  E +T    + 
Sbjct: 183 -EIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNEWLENSTQNIIIP 241

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G I ++NVS AA + ++  +   
Sbjct: 242 MHGKIDSMNVSVAAGILIFEAKRQR 266


>gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 245

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  ++  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S + +A   K ASGA EHIP +R++NL   ++ +       +G + ++  
Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 95/278 (34%), Gaps = 23/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ ++   +                     Q  +         + G H V  A
Sbjct: 1   MQSITSNQNNRVKEWRK-------------------MQSKKGRLSSGQYIIEGWHIVDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +  +    ++   N L +L+ D  +        + P+    I   E   QG+      
Sbjct: 42  IKHDQQIDAVIVTDANFLDQLEVDPAV---TDTYLITPEVAKHISATE-TPQGVFAVLTT 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    +     ++LD++ DP NIG ++R+A A   +G+I  K  +   +  + +S 
Sbjct: 98  ENYHESIPEKLGGSWLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+                          +D     +      + AL++G EG G+
Sbjct: 158 QGSQFHVRLYSGDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFALVMGNEGNGV 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +      ++ M G  ++LNV+ A  + ++    
Sbjct: 218 SADLLDKTDQNLYIPMNGEAESLNVAVATGILIFHFVK 255


>gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
 gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
          Length = 297

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 12/286 (4%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           SK +++     K  +  K   N+   K M++ N+ ++ T      F+YG + V  AL + 
Sbjct: 15  SKLRNDVTMEGKALNRKK---NNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHS 71

Query: 65  SRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIV------GKEAVHQGLAL 116
           ++ I ++     K    +   D  +      + +    I + +      G  AV    A 
Sbjct: 72  AKYIEKIYFSSKKKKNQKGIEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAY 131

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                     D      L++VLD + DP N+GAI+R+A      GII  K  +   +  +
Sbjct: 132 RDIDDALRLADIRGEKPLVLVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTV 191

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK + GA+       +     A  K        +  +  +     ++     +AL+LG E
Sbjct: 192 AKVSEGAIF-SIPCIMVTNLAAALKDLKQRGFWVYAADANGDSCFEQEFGGSVALVLGNE 250

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKG+       +     + M     +LNVS AA + +Y       +
Sbjct: 251 GKGISKLCLNESDYKVSIPMVNDFDSLNVSVAAGILMYEIVRKNNR 296


>gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 265

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD 84
            +   K+M+  + + +   +     + G H +  A + N S  +           +  W+
Sbjct: 6   QNPLIKQMRKLH-RPKGRREQNLFLIEGTHLLETACSVNSSLDVVCCTPQWQTNHKQLWE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V P+ +  I         +A  T               L ++L+ + DP
Sbjct: 65  KAQSLAQRTEVVTPEVLAAIATTINPDGVVASATRIFEDSLAK--SPLSLGLMLERLQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+AVA   D +  T      ++  + ++++G    +P     NL   ++    
Sbjct: 123 GNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPMRVSDNLGALIEGYKR 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              Q IG      K   +        ++LG EG GL P+          + + G +++LN
Sbjct: 183 QQVQVIGTLPQGNKTYWEIDFTRPTLILLGNEGAGLTPELVSLVDQQVTIPLGGGVESLN 242

Query: 265 VSNAAAVALYITQNH 279
           V+ AAA+ LY  +  
Sbjct: 243 VAIAAALLLYEAKRQ 257


>gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 267

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +LYG+H VSAAL NP R+I +L+AT  A   L          PV+T+    ID+++   +
Sbjct: 36  WLYGIHAVSAALANPERRIRRLVATTEAAKSLP-----ATKIPVETMERAEIDRLLAPGS 90

Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG+AL   PL + T++ +          L++VLD V DPHN+GAILRSA AF    ++
Sbjct: 91  VHQGIALLVEPLPAITMEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGALAVV 150

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R++P E+  LAKSASGALE +P +R++N+  AL+ M   GF T GL++D+ K L + 
Sbjct: 151 APDRHAPDETGTLAKSASGALERMPLVRVTNVVRALEDMKKGGFWTAGLAADAPKTLAEA 210

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + K+ L+LGAEG+G+R  T+E    +  L M G +++LNVSNAAAVALY  + 
Sbjct: 211 ELSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEIRR 265


>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 262

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 106/255 (41%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84
            +   K+++  + +++   +   L L G H V  A       I      +  A     W+
Sbjct: 6   RNPLIKQIRKLH-RTKGRREHNLLLLEGTHLVETAYKENCSLITLCYTEEWQARYPQLWE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           +        + V    +  +     V+    + TA     T + + + +L ++++ + DP
Sbjct: 65  SVSKRVKRSELVSADVLASMT--TTVNPDGVVATARFQPRTEEEITDFRLGLIIERLQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A   D I  +      ++  + ++++GA   +P    S+LT  ++K  +
Sbjct: 123 GNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQVPIFVTSDLTTVIKKHKN 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +    ++ +   Q        ++LG EG GL       A  +  + +   +++LN
Sbjct: 183 HGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALADELVSIPLSQGVESLN 242

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+ LY  +  
Sbjct: 243 VAIATALLLYEAKRQ 257


>gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 120/246 (48%), Gaps = 11/246 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTID 102
           +     +YG + V  A+N+  R+I ++  +K+A   +             V T    T+D
Sbjct: 2   KENENIIYGRNPVLEAINSG-REIEKIYVSKSAKGNISKIIKSARDKNIIVSTADNVTLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155
           K+ G    HQG+    +      ++ +            +++LD + D HN GAI+R+A 
Sbjct: 61  KMSG-NGNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS  GI+  KR S   ++ + K+++GA E++   ++SN+ +A+  +   G   +G S D
Sbjct: 120 AFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVGSSVD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+       +  IA+++G+EG+G+    ++    +  + M G + +LN S AA++ +Y 
Sbjct: 180 AKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASIFMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VVRQRI 245


>gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 9/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R      A L      ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V        +A                L+ +     L++LD V DPHN+GA LRSA A  
Sbjct: 62  VEGAVHQGIIARVREGRQYQENDLPALLENLDKPPFLLILDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 122 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 NLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis
           DSM 16069]
          Length = 246

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 10/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V   L   S ++ +L       +  +             +     Q +D++
Sbjct: 2   SELVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIEIIQKERQELDEM 61

Query: 105 VGKEAV-------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +           +         +   L  +  +  +++LD V DPHN+GA LRSA A 
Sbjct: 62  TDQRHQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRSADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  + S + V+ K A GA E +P+I ++NL  A++++   G    G + +++
Sbjct: 122 GVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTAGEAE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + Q      +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+   
Sbjct: 182 QDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFEAV 241

Query: 278 NHFAK 282
               K
Sbjct: 242 RQRIK 246


>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 258

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 14/271 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+ + H           K  +    K ++  Q     L G H V+ A+ +  + I 
Sbjct: 2   EKLTSIHNQH----------VKNWKKLQTK-KYRRQTGTYLLDGWHLVNEAVQSGVQ-IL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL+ T   LA      +L +   V  V  + +  I          A+   P      D  
Sbjct: 50  QLIGTSEQLAAHSDLNSLTN--EVYEVTEEVMQHITDTVTPQGIAAVVPLPDAHKVPDME 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + LD V DP N+G ++R+A A    G++ + R +   S  + +S  G+  H+  
Sbjct: 108 SLHGGWLFLDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQGSQFHLKL 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   +   K           ALI+G EG+G+  +     T
Sbjct: 168 YEGDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQGMSDQLLSQTT 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  ++ M G  ++LNV+ +A + ++    + 
Sbjct: 228 ANLYIPMRGQAESLNVAVSAGILMFQLNKNL 258


>gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
 gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
          Length = 271

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K   +   +   D        ++    Q +D+ 
Sbjct: 26  SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDEK 85

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L+VLD V DPHN+GA LR+A A   
Sbjct: 86  SEGAVHQGIIARVREGRQYQENDLPALLESLDCPFLLVLDGVTDPHNLGACLRTADAAGV 145

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K ASGA E++P I ++NL   L+ +       +G + ++   
Sbjct: 146 HAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEADHD 205

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 206 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 265

Query: 280 F 280
            
Sbjct: 266 R 266


>gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
 gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
          Length = 245

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L N  ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLENSPQRIKEVYILKGREDRRLMPIVHEIEAQGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L     S  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A + K A GA E+IP IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q   +  IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 245

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L    ++  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 294

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      ++     
Sbjct: 30  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 88

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + +             +N+ + + LD V D
Sbjct: 89  ARTFAKGGLVLEVTEKIMAAITRRDNPQMVVGVFEQQYRPLANLKPKNNDVYIALDRVRD 148

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    GII     +   S    ++  G++  +P  +++       +  
Sbjct: 149 PGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPLYKVTEADFLNWRKD 208

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + L++G E +GL     +T   +A +   G   +L
Sbjct: 209 ISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLADTCDKLARIPQAGRADSL 268

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 269 NLAIATGVMLYEIRR 283


>gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
          Length = 270

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 116/284 (40%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  H                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
                 I  ++ ++ A  R          L     +K V   P  + + +   +  QG+ 
Sbjct: 48  EYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDK-DINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G 
Sbjct: 167 TTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 227 ESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270


>gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia
           proteamaculans 568]
 gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia
           proteamaculans 568]
          Length = 243

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D        ++  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIIARVREGRQYQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301]
          Length = 251

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V + L      + ++L  ++   A  +               V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D               ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   IG + D+   
Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IA++LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQ 245

Query: 280 FA 281
            +
Sbjct: 246 RS 247


>gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 282

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 17/279 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           ++S+  K  +     K+ ++   K    S    Q    F+YG H V  AL  P R + +L
Sbjct: 6   RNSNRRKGSQPKGFKKEAKAPRPKYTPESSSNEQESTDFVYGRHAVREALQQPER-VNKL 64

Query: 72  LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
              +    +      D    H   ++ VP   +  +VG E VHQG+    A     TL+ 
Sbjct: 65  WVQEALSGKEITPIIDLAKEHRIQIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLED 123

Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                        +++LD + DP+N+G+ILR+A A    GII  KR S S ++ +AK+++
Sbjct: 124 VFEKAQEKNEDPFILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKAST 183

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA+EH+P +R++NLT  ++++   G    G         +   K   IA+++G EGKG+ 
Sbjct: 184 GAIEHVPVVRVTNLTQTIEQLKERGVWVFGTDMKGTDYRQWNTK-GPIAIVMGNEGKGVS 242

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++    M  + M G +++LN S A+A+ +Y      
Sbjct: 243 RIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFRSR 281


>gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 262

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 20/280 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  +                  +   K +    +K++   Q     + G   +S A
Sbjct: 1   MKQITSVQ------------------NPFIKSLALLQEKAKARKQTGTFLIEGQREISLA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +     +I  +L   + +     +  +     +  +  +   K+  ++     LA+    
Sbjct: 43  IK-GGYEIETVLFLPDLVTENQINKLVGSSVQLIEINKEVYQKLAYRDTTEGILAVAKTK 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L  +   + ++ L++V + +  P N+GA+LR+A A + D ++                +
Sbjct: 102 SLKLSDLKLSDNPLILVAESLEKPGNVGAVLRTADAANLDAVLI-ADPKSDLYNPNIVRS 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           S        I      + +  +          +  +      +      AL++G E  GL
Sbjct: 161 SVGCLFTNQIATGTTEEIIAFLKEKNISFYSATLQNSTSYHTQNFTAPTALVVGTEATGL 220

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K ++ AT    + M G I ++NVS AAA+ ++  +   
Sbjct: 221 SQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260


>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
           Desulfobacterium sp.]
          Length = 270

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 10/259 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANL 87
           +  +S  +      + E   LYG+H V  A+    RK++++   K   + L R       
Sbjct: 3   RNFKSLEKSRLEMDKSE--ILYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISKLAE 60

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVN 142
           P   P+ +V P  + KI G +      A  +   L    D       +N   L++LD V 
Sbjct: 61  PAKIPLISVKPDHLTKITGSDFQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLLDTVV 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA+ R+A+     GI+ TK  S S +  ++K+++GALEHI   +++N+  ++++M
Sbjct: 121 DPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSSIKEM 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +G+ + +  P+        IAL++G+EGKG+R   +     +  +   G + +
Sbjct: 181 KDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKGEVSS 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN S A AVA+Y       
Sbjct: 241 LNASAAGAVAMYEVFRQRN 259


>gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
 gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
          Length = 243

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D        ++  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIIARVREGRQYQENDLPGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 13/272 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+  +          ++   K +++ +QK ++ ++       G+  V  AL N    I  
Sbjct: 13  KVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDAL-NLEWTIQT 63

Query: 71  LLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L+ +K+ +     +    H       V     + ++ I  ++     + +         +
Sbjct: 64  LIFSKSKIGDTAIENIAAHTIANGGLVIKASKKVMESITRRDNPQTAIGIFKQQWQPLEM 123

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              RN  + + LD V DP N+G I+R+  A    G+I     +   S    ++  G++  
Sbjct: 124 IKRRNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFS 183

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R           H  G         S    + + KN  + L++G E +GL      
Sbjct: 184 IPLYRFDESAFLNWSAHFKGMVVGTHLKGSIDYRKIDFKNGPVILLMGNEKQGLPDTLAN 243

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +A +   G   +LN++ A A+ LY  + 
Sbjct: 244 RCDQLARIPQSGRADSLNLAVATAIMLYEIRR 275


>gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
 gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
          Length = 272

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 113/270 (41%), Gaps = 5/270 (1%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73
           +K+  +    +     K+    N++       +   + G ++V  AL  N  +KIF    
Sbjct: 3   IKNKTHKNSNKTQTVKKQFSQKNKRKTLKRSEDLF-ICGRNSVKEALNENQIKKIFIKSG 61

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVR 130
             +   +           PV+    + +DK+            +       L   L   +
Sbjct: 62  NNDQRLKDIVKIAQNKNIPVEIEEQEILDKMSDGVRNQGIVASMKPFEYSDLEEVLSKAK 121

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P  
Sbjct: 122 EDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVC 181

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++    
Sbjct: 182 EIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDF 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G + +LNVS AAA+ +Y +    
Sbjct: 242 LVRIPMKGKVSSLNVSVAAALLIYESVKQR 271


>gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           MP688]
          Length = 249

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L      + ++L  K+ +  R+    NL     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D               +VLD V DPHN+GA LR A A   
Sbjct: 66  ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQ 245

Query: 280 FA 281
             
Sbjct: 246 RN 247


>gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 250

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQR 243


>gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591]
 gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591]
          Length = 244

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGGIAVQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
 gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
          Length = 245

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             +++G H V A L     ++ Q+      ++   +   D         + V  + +D+ 
Sbjct: 3   EEYIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQR 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V    VHQG+    +     + D              L++LD V DPHN+GA LR+A A 
Sbjct: 63  VA--GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S S S  + K A GA E +P +R++NL   ++ +   G   IG + ++ 
Sbjct: 121 GVQAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY   
Sbjct: 181 STLHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
 gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
          Length = 249

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 250

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 279

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 4/256 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K+R   + +   + GV  VS    +   KI+      +       +    
Sbjct: 24  QVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLLVKIYMSERFHSNNPEYVHELVKK 83

Query: 89  HPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  ++ V     D++  +    QG+        S   D + ++ LL++++++ DP 
Sbjct: 84  QGISSDSIEIVADNVFDRMS-QTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDPG 142

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR        G+I +       +    +S  G++  +P++ + + +DA+ +  + 
Sbjct: 143 NLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKNA 202

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +      D K     E   +  A ++G EG GL     + A ++  + M G +++LN 
Sbjct: 203 GIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTEDITKQADTLIRIPMQGEVESLNA 262

Query: 266 SNAAAVALYITQNHFA 281
           + A  +  Y      +
Sbjct: 263 AIACTILTYEAVRQRS 278


>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
 gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
          Length = 249

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103
           +  F+ G + +  AL +  R + ++   + +     +   +        V+ VP + +D+
Sbjct: 2   DREFITGKNPIIEALRSG-RPMNKIWIGEGSQKGQMQKVLELAKEQGVLVQHVPKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++G E  HQG+    A      +D               +VLD V DPHN+G+ILR+A A
Sbjct: 61  LIGHE-NHQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPHNLGSILRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   +  +AK+++GA+E++P +R++NL   ++ +   G   IG  +  
Sbjct: 120 AGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKRGLWFIGTDAKG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       +  IAL++G+EGKGL    +E    +  + M G + +LN S A ++ +Y  
Sbjct: 180 SEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEA 239

Query: 277 QNHF 280
               
Sbjct: 240 YRKR 243


>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
 gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
          Length = 264

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 5/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K   S   K +H  +     + G+H V  AL   ++    +   +  L       
Sbjct: 10  QNARAKGWASLLDK-KHRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPLELQQL 68

Query: 86  NLPHPFPVKTVPPQ--TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                FP   V      + K  G ++     A+   P++  T    R   L++VLD V D
Sbjct: 69  PALIAFPELLVSASTVVMAKCTGTDSPPPVFAVVAKPVVEETA-LFREQSLVVVLDGVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA A   D ++  +      +    +S  G+L H+P I    L    +   
Sbjct: 128 PGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLPVIEADLLELLPKAQE 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                       +    + +       L++G+E  GL P+  E A     + + G  ++L
Sbjct: 188 RGIRLAATSLQSAVSCYDCD-WTSATWLLMGSESDGLSPEVLELADQSVIIPIRGRAESL 246

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AA V LY      
Sbjct: 247 NVAMAATVILYEALRQR 263


>gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
 gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
          Length = 249

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
 gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDW 83
            +   K+++   Q+++   + +   L G H +  AL      +        +N   RL  
Sbjct: 68  QNPLIKQLRKL-QRTKGRREQQLFLLEGTHLIEEALATQYPLLTVCYTAQWQNRYPRLWE 126

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                     + V  + +  I    A         A    P    V  +Q+ + L+ V D
Sbjct: 127 SVCQAAS-RSEEVNERVLQAI----ATTVNPDGIIATAPRPQPQTVAITQIGLALETVQD 181

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A   DG+  +      +   + ++++GA   +P     +LT+ L    
Sbjct: 182 PGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMAVGGDLTEQLTIAQ 241

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +    D+     +        ++LG EG GL       A     + + G +++L
Sbjct: 242 QQGVQIVATLPDADLTYWELDFQQPTIVVLGNEGAGLSSSLTALADQHVQIPLSGGVESL 301

Query: 264 NVSNAAAVALYITQNH 279
           NV+  AA+ LY  Q  
Sbjct: 302 NVAICAALMLYEGQRQ 317


>gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
 gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
          Length = 250

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 319

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L G +++  AL       K+F     K    R               V    +D +    
Sbjct: 80  LEGRNSIMEALKANRTINKLFIAKGEKEGSIRQIIAMARQKGIITTEVDKSILDGMSSTR 139

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    A      +D +            +++LD ++DPHN GAILR+A A    G
Sbjct: 140 S-HQGVIAYVAVKDYVEVDDILAAAQEKGEPPFIIILDEISDPHNFGAILRTANAVGAHG 198

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ ++K+++GA+E++P  R++N++  ++ +       +G  S  +K   
Sbjct: 199 VIIPKRRAIGLTSTVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFY 258

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      +AL++G+EG+G+    +E    + ++ M G I +LN S AAA+ +Y       
Sbjct: 259 ESDLKGPMALVVGSEGEGMGKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQRG 318

Query: 282 K 282
           K
Sbjct: 319 K 319


>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 245

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           ++G H V++ + + +  + ++        R   D           +     Q +  +VG 
Sbjct: 6   IFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLAAMVGT 65

Query: 108 EAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                 +A   A      L   LDAV    LL++LD + DPHN+GA LR A       +I
Sbjct: 66  RRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAVI 125

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A   K +SGA + +PYI ++NL   ++ +   G   IG S D++K L + 
Sbjct: 126 APKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLYEG 185

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 AL++G+EG+G+R  T+ET   + ++ M G +++LNVS A+ V LY  +   
Sbjct: 186 DFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQR 242


>gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
 gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
          Length = 261

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 76

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   ++++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 250

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
 gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
          Length = 254

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 24/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   +                  +   K  +      +   +     + G H V  A
Sbjct: 1   MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFIVEGFHLVEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N   ++ Q++  +     + W  +      V +V  +   +    + V          
Sbjct: 43  LKN-KEQVLQIIVREGVDLPMLWPIDGIAIIEVTSVVAKEFAETETSQGV-----FAICK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   +   + + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A
Sbjct: 97  QPALEEEVKASWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R                       +   P          A+I+G EG G+
Sbjct: 157 QGSHFHIPVVREELTECVDFLQAQGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGI 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +P+          + + G  ++LNV+ A  + LY
Sbjct: 217 QPQLLAMTDQNIIIPIFGQAESLNVAVATGIVLY 250


>gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 257

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 7/244 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQT 100
            +P    +YG + V   L +    + ++    N    +L            P      + 
Sbjct: 12  QKPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLRIPCGKARMEK 71

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  + G        AL T+       +       +S LL++L  + DPHN+GAI+R+A A
Sbjct: 72  LTLLSGTAKNQGVCALLTSVTFYTLNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEA 131

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I  +      SA + K+++GAL H+   ++ ++  AL  +   GF  +    ++
Sbjct: 132 VAADAVIMIEGKGAPISATVHKASAGALSHMRVCKVKSVVKALDLLRERGFSIVAADMEA 191

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +             L++GAEG GL  +T+     +  + M G +++LNVS AA V LY  
Sbjct: 192 EHNHTDIDWKRPTVLVMGAEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLYEA 251

Query: 277 QNHF 280
               
Sbjct: 252 MRQR 255


>gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 270

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  H                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVREAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
           +     I  ++ ++ A  R          L     ++ V   P  + + +   +  QG+ 
Sbjct: 48  DYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G 
Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFCVVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 227 ESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
           flavefaciens FD-1]
          Length = 254

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 7/244 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +     ++G + V  AL + +      +        L           +K    + + +
Sbjct: 9   DERSEDIIFGRNPVIEALKSDANLDCIYICGSGGSLNLIRKLAKDKGVVIKDAQEKKLSQ 68

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G  +     A+          D             +++ D + DPHN+GAI+R+A   
Sbjct: 69  LSGGASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGAIIRTAETS 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR S S +A + K+++GA  ++P  R+SNL   +  +   G    G  +   
Sbjct: 129 GADGIIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWIYGTDASGT 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q       AL++G+EG G+    Q+    M  L M G I +LN S AA + +Y   
Sbjct: 189 EYT-QTDFTGSCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMYEIL 247

Query: 278 NHFA 281
              +
Sbjct: 248 RQRS 251


>gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 260

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 100/257 (38%), Gaps = 6/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +K ++   ++ R   +     L G   +  A        + +L+  N     + 
Sbjct: 6   SKENNFFKSIKKLKER-RFRQKEGKFILEGFRLIEEAAKANMEIEYIILSQGNEEKLYNS 64

Query: 84  DANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 +   +         +I   E     +A+     ++  LD        +V D V 
Sbjct: 65  SLKEVINDDKIYVFSSSLFLQISSTEHPQGVIAVVKNKKMTIDLDGG----FFLVCDKVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+  A   DGII TK      +    +S  G++ ++P          ++K+
Sbjct: 121 DPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDFSIIKKL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +  S +  K   +E    KI L +G EG G+  +  E A+    + MPG  ++
Sbjct: 181 KDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVKIPMPGGAES 240

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ L+     
Sbjct: 241 LNVAIATSIILFEKVRQ 257


>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            ++G H V++ L + +  + ++        R   D           +     Q +DK+VG
Sbjct: 5   VIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDKMVG 64

Query: 107 KEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A+         L   LD++  + LL+VLD + DPHN+GA LR A +     +
Sbjct: 65  TRRHQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A + K ASGA E +PYI ++NL   L+++       +G + DS K L +
Sbjct: 125 IAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDKSLYE 184

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A ++G+EG+G+R  T+ET   +  + M G +++LN+S A+ + LY  +   
Sbjct: 185 PDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARRQR 242


>gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640]
 gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06]
          Length = 250

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
 gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
 gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
          Length = 268

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDW 83
            +   K +    +KSR   +     L G   ++ AL   +  I  LL      +  R+  
Sbjct: 9   QNTTIKHILQLQEKSRSRKKEGKCILEGFRELTLALE-GNYAIDTLLFYPEICSYERIQE 67

Query: 84  DANLPHPFP-VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHV 141
                   P    +  +   KI  + +       ++T      T+     + L++V +  
Sbjct: 68  LLATAKNTPECIEISKEVYQKIAYRGSTEGVLAIIQTKEHSLKTITFHNKTPLILVAEAP 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D +                 +S        I + +  + +  
Sbjct: 128 EKPGNIGALLRTADAANIDAVFI-ANPKTDLYNPNIVRSSVGCVFTTQIAMGSTAEIISF 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +          +  + +    +      A+++G E  GL  +    +T    + M G I 
Sbjct: 187 LQEKDIAIYCAALTASEHYHLQNYQKATAIVVGTEATGLSDEWLNNSTQNIIIPMQGKID 246

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS AAA+ ++  +   +
Sbjct: 247 SMNVSVAAAIVIFEAKRQRS 266


>gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
 gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
          Length = 243

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
 gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
          Length = 249

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
 gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
          Length = 245

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    +               V+    Q +D  
Sbjct: 2   SEIVFGIHAVKALLDSSPQRFQEVFILKGRDDKRLQPLVKELEAQGIVVQIANRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P           L    +S  L++LD + DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K ASGA EH+P I ++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
 gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
          Length = 271

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 135/266 (50%), Positives = 177/266 (66%), Gaps = 4/266 (1%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           KDSHYA+LRR +RD K      Q S H   Q E ++LYG+H V AAL NP R +  L AT
Sbjct: 7   KDSHYARLRRQYRDTKGF--LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRHLYAT 64

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            NAL RL+ + +     P+    P+ ++  VG EAVHQGL LET  L S +L  + N+ L
Sbjct: 65  PNALKRLNINESSLS-CPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELTNTDL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI + N
Sbjct: 124 IIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVQN 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L+ AL++++   F + GL S+ + PLE  +  +KI+L+LGAE KGLR KT+ET   +A L
Sbjct: 184 LSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYKLARL 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            MPG IK+LNVSNAA +ALY    + 
Sbjct: 244 DMPGDIKSLNVSNAATIALYAAHKYL 269


>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 245

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 8/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL         L++       L             V+  P + +++    
Sbjct: 4   YIVGRNAVKEALKAGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNRY-ET 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+      +    L     ++   + LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  DVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E IP +++ N+T  ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y       
Sbjct: 183 ADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRT 241


>gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
 gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
          Length = 272

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDA 85
           R  K     +Q+     +  +  L G H V  A+         LLA     +  R   D 
Sbjct: 3   RRMKH-TEQHQRGTRPVEHRSDILAGRHAVMEAMKAGRGINRILLADGLHGSGVRELRDL 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVL 138
              +      V    +D  V +   HQG+    AP+   +++             LL++L
Sbjct: 62  AREYGVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   
Sbjct: 122 DGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQT 181

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +   GF   G   D  +  ++      + L++G+EG+G+   T+E       L M G
Sbjct: 182 MRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCG 241

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            I +LN S A A+ +Y  Q   
Sbjct: 242 KINSLNASAAGAILMYEAQRQR 263


>gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
 gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
          Length = 298

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G   V   L   +P  ++      + A              PV+ V P  I++    +
Sbjct: 51  VEGRRPVLELLGSAHPVHRVLVARGRRGAAIAELEQRARARGVPVEEVDPVEIERRAQTD 110

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                LAL         LD +          LL++   + DPHN+GA+ R+A A    G 
Sbjct: 111 THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHGA 170

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +     S    A + KS++GAL H+P   ++NL  +++++   G   +    +  +P ++
Sbjct: 171 VVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLKERGVWVVAADPEGAEPYDR 230

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A++LG+EG+G+ P  +        + M G + +LNVS AA V L+      
Sbjct: 231 WDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQR 288


>gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC
           H10407]
          Length = 243

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           SIP3-4]
          Length = 249

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L   +  + ++L  K+ +  R+    NL     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D               +VLD V DPHN+GA LR A A   
Sbjct: 66  ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L        +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQ 245

Query: 280 FA 281
             
Sbjct: 246 RN 247


>gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19]
 gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC2047]
          Length = 244

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
              ++G+H V A L   + ++ ++L  ++      R            V  V    +++ 
Sbjct: 1   MEIVFGIHAVQALLQRNAGRVERVLIQQDKFNGRVRELMQLANKKKVRVDQVDRDELEQH 60

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                 HQG+        S        L    +  L++VLD V D HN+GA LRSA A  
Sbjct: 61  AD--GNHQGVVAICKNQKSLNEADLDQLLEEVSQPLVLVLDGVTDTHNLGACLRSADAAG 118

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSK 217
              ++  K  S   ++V++K ASGA E +P+++++N             + T     +S 
Sbjct: 119 VTAVVVPKDNSADLNSVVSKVASGAAETLPFVKVTNLARTMKAMQDRGLWITGTAVDESS 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +PL +        +++G+EGKG+R  TQE    + ++ M G + +LNVS A  V L+   
Sbjct: 179 RPLYEADLTGPRVIVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAV 238

Query: 278 NHFAK 282
               K
Sbjct: 239 RQRVK 243


>gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
 gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
          Length = 270

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 13/254 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVP 97
           +  +  +  ++YG+H V   L     +I ++   +    +      +    +      V 
Sbjct: 13  KKITMSDLEWVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRLLNLCRENGIKANVVA 72

Query: 98  PQTIDKI---VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            + ID++     +  VHQG+A             L   ++ +    L+++LD + DPHN+
Sbjct: 73  RREIDQLFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNL 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LRSA A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G 
Sbjct: 133 GACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGV 192

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++ + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS 
Sbjct: 193 WIFGTAGEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSV 252

Query: 268 AAAVALYITQNHFA 281
           A  + LY       
Sbjct: 253 ATGICLYEAVRQRI 266


>gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 244

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            + G + V  AL N  R I +++  K +              +   ++ V    +D++  
Sbjct: 3   LIEGRNPVIEALKNN-RPIEKIMVNKGSKEGSIKKIIGMAKDNNIIIQQVDRHKLDEMSE 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+   T+  +   L  +             ++LD + DPHN+G+I+R+A A   
Sbjct: 62  SHA-HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGA 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR S   + ++AK+++GA+E++P  +++N+ + ++++   G             
Sbjct: 121 HGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIA-AVDMGGDA 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q      +AL++G+EG+G+   T+E       + M G + +LN S A  + LY     
Sbjct: 180 FYQTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239

Query: 280 FA 281
             
Sbjct: 240 RN 241


>gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SE11]
 gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 243

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +   L   A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
 gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
          Length = 270

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 4/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K      + ++   Q E     GV     A  +  R I ++  T+ AL R   
Sbjct: 7   SKENPAVKHAARLLKSAKFRRQEEAFLAEGVRLCRDAAYSGVR-ILRMFYTEEALERYPK 65

Query: 84  DANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D  L          +  Q    +           +      +  LD +  S  L+ L+ +
Sbjct: 66  DVELLREKAERAFLLSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDI 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQ 200
            DP N+G +LR+A A    G+I T+      S  + + + GA+  +P     +       
Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNA 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                      +     +P+ Q + +    +++G EG GL+P+T         + M G  
Sbjct: 186 LEQKGFVTMAAVPDREAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRA 245

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN S AA++ ++    
Sbjct: 246 ESLNASVAASLLMWEMMR 263


>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 264

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 4/253 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K+++    + +   +     L G H V  A+   +         +++   +    
Sbjct: 10  QNQQIKELKKLFTR-KGRKKAGQYLLEGPHLVEMAVKADAEIQMIYYVPESSHQNVMQIQ 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L    P+  V P+    +   +  HQ +        + +LD  + ++ L++LD V DP 
Sbjct: 69  ALKADLPLTQVTPEVAKALSQTD-HHQDIFAVANIPQAKSLDIDQLTKGLLILDQVQDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A AF    ++         +  + +S  G+   +    +  +    Q   + 
Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSMQGSHFAVNTYEVDLVEVIPQLQEAG 187

Query: 206 GFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            F T    ++  K           K AL++G EG G+   T + A +  ++ M G  ++L
Sbjct: 188 YFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSGSAESL 247

Query: 264 NVSNAAAVALYIT 276
           NV+ A A+ +Y  
Sbjct: 248 NVAVAGAIVMYQF 260


>gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1]
          Length = 255

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
 gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+ G + V  AL +  P  K+     +         +       PV+ V  + +D++ 
Sbjct: 2   EEFIVGRNAVREALRSRRPFNKVLVQEGSHGGSLSEILELAQEQKIPVEKVSREVLDRLA 61

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+A + AP+    LD             LL++LD + DP N+GA++R+A A  
Sbjct: 62  DGVR-HQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQDPQNVGALIRTANAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   +AV+AK ++GA+E++P I+I N+   ++++   GF   G   D + 
Sbjct: 121 VHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLKKRGFWIAGADMDGED 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     + L++GAEGKGL    +E    +  + M G + +LN S A  + LY    
Sbjct: 181 QYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRI 243


>gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 266

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L G H ++ A+       +I        +  R   D    H   V  V    +D    +
Sbjct: 19  ILAGRHAITEAIKAGRGINRILIADGLHGSGVRELRDLARAHDITVDIVSRAKLDA-AAQ 77

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A H G+    AP+    ++             LL++LD + DPHN+GA+LR+A A    
Sbjct: 78  GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G         
Sbjct: 138 GILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRALKEDGFWIAGADMAGSDTY 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      + L++G+EG+G+   T+E       L M G I +LN S A A+ +Y      
Sbjct: 198 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 257

Query: 281 A 281
            
Sbjct: 258 T 258


>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 245

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL         L++       L             V+  P + +++    
Sbjct: 4   YIVGRNAVKEALKAGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNRY-ET 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+      +    L     ++   + LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  DVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E I  +++ N+T  ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y       
Sbjct: 183 ADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQRT 241


>gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
 gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
          Length = 249

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ +I  L   ++   R   +     L        V  + +D +V   
Sbjct: 7   YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLVPGV 66

Query: 109 AVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A        T   L   LD ++   LL++LD V DPHN+GA LR+A A    G+
Sbjct: 67  RHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A + K ASGA E +P++R++NL   ++K+   G   +G        L  
Sbjct: 127 IAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLYN 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + L+LGAE +GLR  T E    +  + M G + +LNVS AA V L+  Q   
Sbjct: 187 TDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 244


>gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 248

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTID 102
           +     +YG + V  A+N+  R+I ++  +KNA   +             V T    T+D
Sbjct: 2   KENENIIYGRNPVLEAINSG-REIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155
           K+      HQG+A   +      ++ +            +++LD + D HN+GAI+R+A 
Sbjct: 61  KLS-NYGNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS  GII  KR S   ++ + K+++GA E+I  +++SN+ +A+  +   G   +G S D
Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +    +       +A+++G+EGKG+   TQ+    +A + M G I +LN S AA++ +Y 
Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VIRQR 244


>gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
 gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 248

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           FL+G+H V AAL      +  L      K+A  R   DA       V+ V  Q ++++  
Sbjct: 6   FLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQALERLCP 65

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                  +A               P L     S LL+VLD V DPHN+GA LR+A A   
Sbjct: 66  GARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLRTADAAGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I  +  +   + V  K ASGA E +P+++++NL   L ++   G   IG S D+ + 
Sbjct: 126 DAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSGDAPQT 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IA+++GAEG+G+R  T+E    + ++ M G + +LNVS A  V L+     
Sbjct: 186 LYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFEVVRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
 gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 247

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L     +  ++   K    R       A       V+    Q +D  
Sbjct: 3   EDIIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 63  TEGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 183 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQ 242

Query: 280 FA 281
             
Sbjct: 243 RI 244


>gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
 gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
          Length = 272

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 5/270 (1%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73
           +K+  +    +     K+    N++       +   + G ++V  AL  N  +KIF    
Sbjct: 3   IKNKTHKNSNKTQTVKKQFSQKNKRKTLKKSEDLF-ICGRNSVKEALNENQIKKIFIKSG 61

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVR 130
             +   +           P++    + +DK+            +       L   L   +
Sbjct: 62  NNDQRLKDIVKIAQNKNIPIQIEEQEILDKMSDGVRNQGIVASMKPFEYSDLEEVLLKAK 121

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P  
Sbjct: 122 EDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVC 181

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++    
Sbjct: 182 EIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDF 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G + +LNVS AAA+ +Y +    
Sbjct: 242 LVRIPMKGKVSSLNVSVAAALLIYESVKQR 271


>gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
 gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
          Length = 258

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E  F++G   V  A++      K+       N L +        +  PV  VP   +++
Sbjct: 15  TEKDFIFGTRAVMEAIHAGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLNR 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +   +LD V  S        L+++LD + D  N GAI RSA  
Sbjct: 75  VT--RKNHQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAEC 132

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S   ++   K+++GAL  +P +R+ NL    + +   G   + ++  S
Sbjct: 133 AGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEKS 192

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K + +      +A+I+G+E  G+  +    A    ++ M G I++LNVS +A VA+Y  
Sbjct: 193 DKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYEA 252

Query: 277 QNHFAK 282
                K
Sbjct: 253 MRQRRK 258


>gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102]
 gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102]
          Length = 249

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 255

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
 gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
          Length = 268

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 107/282 (37%), Gaps = 21/282 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +IS  K+ KI  L+  +  K RR +                       L G   ++ AL
Sbjct: 3   EVISSFKNSKIKFLRSLYRKKYRRRN-------------------NKFILEGSRIITDAL 43

Query: 62  NNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              +       + +  +     +  A L     +  +    ++KI         +A+   
Sbjct: 44  EAKADIDQIFYSAQFLSQQKNKELLAQLREVTEIIEITDSLLNKIADTATPQGIIAIVNQ 103

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P        + ++ L +++D + DP N+G ILR+A     DG+   K      +    ++
Sbjct: 104 PEFELEDFLIEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRA 163

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+L  +P   +++ +D    +     Q +    ++K    +   N   AL++G EG G
Sbjct: 164 TMGSLFRVPVFGLNSPSDLTDILQMKDIQMVAADIEAKDYYYELDYNQPTALVIGNEGAG 223

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +P+T + A     + +   I +LN + A+ + +Y       
Sbjct: 224 AQPETLKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQRK 265


>gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 250

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 253

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 6/251 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ L  T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLYVL-GTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++     +      K +    + L      S + +  +     +VLD++ DP 
Sbjct: 66  KLKDDKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   L        + 
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN 
Sbjct: 182 LPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALYIT 276
           + AA + +Y  
Sbjct: 242 AVAAGIMIYHF 252


>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 310

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 10/269 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A +R NH   K+ QS +++       E   + G + V   L          +     A  
Sbjct: 41  AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSEADE 100

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL    +        +  VP   +D++     +HQG+AL+  P      D          
Sbjct: 101 RLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGSP 159

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  R
Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVAR 219

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L      G + IGL +     L+     D I +++G+EGKGL    ++    +
Sbjct: 220 ATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEV 279

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 280 VSIPMAGNAESLNASVAAGVVLAEISRQR 308


>gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM
           22836]
          Length = 263

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 23/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ +I ++                       K++   +     + G   ++ A
Sbjct: 1   MEKIVSLQNTRIKNIVKL-------------------SKAKERREQNLFIIEGARELNLA 41

Query: 61  LNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L      +  +        +                 V     +KI  +E     L L  
Sbjct: 42  LMAGYE-VDSVFVCPELFVKTDYPHVLESISDNKKFEVSEAVFEKIAYREGSDGLLTLAK 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               + T   + ++  L++L+ V  P N+GA+LR+A A   D +I     +       A 
Sbjct: 101 PKGHTLTDLKLSDTPFLIILESVEKPGNLGAVLRTADAAQADAVIVC-DPATDIYNPNAI 159

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            +S          +    +AL  + S   +      ++ +  +        A+++G E  
Sbjct: 160 RSSVGCVFTVQTAVCTSQEALSYLRSRNIKAYAAELNASQWYQDTDFTKPSAIVMGTEAD 219

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GL     + A     + M G I +LNVS + A+  +      
Sbjct: 220 GLTLFWLDNADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQR 261


>gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii
           Sb227]
 gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 243

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
 gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
          Length = 287

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 22/281 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENL---------FLYGVHTVSAALNNPSRKIFQ 70
             K R  +R  +      +K    ++             F++G H V  AL  P R + +
Sbjct: 9   KKKSRNGNRSDRGRSERAEKRPRPTREHVERVEAQDVVDFVFGRHAVVEALQTPDR-VNR 67

Query: 71  LLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +   +    R      D        V+TVP   I+ +VG  AVHQGL    A      L+
Sbjct: 68  VFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVG-NAVHQGLVASIAAYEYADLE 126

Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                         +++LD V DPHN+G+ILR+A A    GII  KR S S +A +AK++
Sbjct: 127 DVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLTATVAKAS 186

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GA+EH+P +R++NLT  ++++ + G    G   +     +   K   +A+++G EGKG+
Sbjct: 187 TGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNGTDYRKWNTK-GPLAIVMGNEGKGV 245

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +E+   M  + M G +++LN S A+A+ +Y    + +
Sbjct: 246 SRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNRS 286


>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 256

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 95/274 (34%), Gaps = 25/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+EKI  L     A                   +   +     L G H V  A
Sbjct: 1   MESISSPKNEKIKELVKLQTA-------------------KGRKKAGMYLLEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +    R   +L+   +       +        V  V      K+       QG+      
Sbjct: 42  IK--ERAQIKLIVVTSNRLEDYKNLLAQTDVQVLVVSQDVFHKLS-MTETAQGILAVVEI 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +    L    +    +VLD V DP N+G I+R+A A   D ++         +  + +S 
Sbjct: 99  VKQEIL---PHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP  + +                +       K          +A+++G EG+G+
Sbjct: 156 QGSHFHIPVFQANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATDVAIVVGNEGQGV 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                + A  +  + + G  ++LNVS A+A+ +Y
Sbjct: 216 SDDVIDLADVVVTIPIFGKAESLNVSIASALLMY 249


>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
 gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
          Length = 262

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 26/281 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLI  K +  I  ++                     +K ++  Q E   + G   V  A
Sbjct: 1   MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  +    L+A          +   ++     V  V  + + ++              
Sbjct: 42  LKSTFQVSHMLIAESAIEKCNSFNILNSVDENTKVSLVKDEILKELCETNNPQG----II 97

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A + +  +     +   +++D V DP N+G I+RSA A    G+I TK      +    +
Sbjct: 98  AVVDNKKISIEDKNGFYILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++  IP I  ++           GF+ I  S D++          K+ + +G EG 
Sbjct: 158 STMGSIFKIPIIEDNDFEVINDLK-LKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEGN 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+  +          + MPG  ++LNV  AA++ +Y     
Sbjct: 217 GVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQ 257


>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 247

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L +   +  ++ A K    +      D        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILESEPERFVEIYALKGRDDKRSTPIIDEARKFGISVQFMQRKALDSK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E  HQG+        +             ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  SKGE-QHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 297

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 8/277 (2%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            + +  K+  +K+         +   K ++S   K +   Q       G+  V  AL   
Sbjct: 17  HRPEHPKVGQVKEVT----SLANPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQD 71

Query: 65  SRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            R    + A      +               V  V  + I  I  ++       +     
Sbjct: 72  WRIKTLVFAKSGKGNKTVEQVAARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQY 131

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                   + + + + LD V DP N+GA++R+A A    G+I     +   S    ++  
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G++  +P  R S       +    G         +         N  + LI+G E +GL 
Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLP 251

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    +A +   G   +LN++ A  V LY  + 
Sbjct: 252 DSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 288


>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 258

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+ K+++ I   +  H                    S+   +     + G H V  AL  
Sbjct: 7   ITSKQNQSIKEWRKLHT-------------------SKGRRKARAFLIEGDHLVQEALKA 47

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               +  L+AT   L   +   +  H      + P     +   +      A+  +    
Sbjct: 48  G-LPLQALMATPAYLGDHEELFDQDH-CDTYLLTPGLAQYLSQTQQDQGVFAVVESKQKP 105

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +LD   +   L++LD + DP N+G ++R+A A   D +I  +      +  + ++  G+
Sbjct: 106 ASLD--PSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQGS 163

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + H+P I             +             +       +DK+ALI+G EG G+   
Sbjct: 164 IWHLPVIHYDLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGD 223

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A    ++ M G  ++LNV+ A  + L+   
Sbjct: 224 LIQAADHSVYIPMLGQAESLNVAVATGILLFHFN 257


>gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 245

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             +++G H V A L     ++ ++      ++   +   DA      P K V  + +D+ 
Sbjct: 3   QEYVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDER 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V    VHQG+    A     T D              L+VLD V DPHN+GA +R+A A 
Sbjct: 63  VS--GVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S S + V  K A GA E +P++R++NL   L+++   G   IG + ++ 
Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY   
Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 237

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 3/233 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
            L G+H V  AL   +     ++A      RL    +L      PV+  P  ++D++ G 
Sbjct: 3   LLSGIHPVVEALRAGNPLERIVIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLAG- 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            + HQG+    A      LD+V  S++L+VLD V DPHN+GAI+R+A A     +I  +R
Sbjct: 62  SSAHQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVPER 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   + V+AK+A+GALEH+P +R++N+  AL+ +   G    GL     +  +Q     
Sbjct: 122 RAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDYAK 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K  L+LG EGKGL  + ++    +  + M G I +LNVS AA V L+  +   
Sbjct: 182 KSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRR 234


>gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Neisseria meningitidis H44/76]
 gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           CU385]
          Length = 261

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 76

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus
           Ueda107]
          Length = 249

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             +YG+H V A L +  +++ ++      ++   +    A   +      V    +D +V
Sbjct: 4   ELVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAELNQIHCNLVSRNKLDDMV 63

Query: 106 GKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +E     +A  T             L+ +     L+VLD V DPHN+GA +RSA A   
Sbjct: 64  SEENHQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   + V  K A GA E +P+I ++NL   L+K+   G    G + ++ + 
Sbjct: 124 HAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IA+++GAEG GLR  TQET   + H+ M G + +LNVS A  V L+     
Sbjct: 184 LYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 7/237 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G H V+A L + +  + ++       +   +    A       V     Q +  +VG 
Sbjct: 2   IFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVGT 61

Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                 +A       A  L   LDA+    LL+VLD + DPHN+GA LR A       +I
Sbjct: 62  RRHQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A  AK ASGA E +PYI ++NL   L+ +   G   IG + D+++ L Q 
Sbjct: 122 APKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLYQG 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 ALI+G+EG+G+R  T ET   + H+ M G +++LNVS A+ V L+  +   
Sbjct: 182 DFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQR 238


>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
 gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
          Length = 263

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 95/282 (33%), Gaps = 25/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +        L  K        +         +  V  + + KI         +     
Sbjct: 43  LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS-LTDADDVMTWID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L +  +    +VL+ V DP N G ILRSA A     I+ +       S  + ++
Sbjct: 102 IPKQAGLPSDDDC---VVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +       L+  ++K     + T     +          +   A + G EG G
Sbjct: 159 GMGAHFLLSIFSRVELSAWMEKYQHPIWATALGGRNIGLYEMN--LSQSCAWVFGNEGSG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + +E A +   + M G  ++LNV+ AA V L+       
Sbjct: 217 VSERIKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 258


>gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis 8013]
          Length = 250

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15]
          Length = 245

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            F++G H V A L     +  Q+      ++   +   D         K V  + +D+ V
Sbjct: 4   EFVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDERV 63

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               VHQG+    +     T D              L+VLD V DPHN+GA +R+A A  
Sbjct: 64  S--GVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S + V  K A GA E +P++R++NL   L+ +   G   IG + ++  
Sbjct: 122 VQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEADA 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY    
Sbjct: 182 TLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               ++ V  Q +D+ 
Sbjct: 2   SEIIYGIHAVQALLERDPQRFLDVYLLKGRDDRRLQPLLQQLENAGIVIQMVSRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A   A       D       + + LL+VLD V DPHN+GA LR A A   
Sbjct: 62  AEGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  +   +A   K ASGA E +P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAGEADHH 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS AA V+L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 277

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 5/256 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K ++    K     +       G   +  AL  P   + +L AT  A AR       
Sbjct: 10  PRVKAVRRL-TKRAFRDRDRAFLAEGPQAIREALRTPGVTV-ELYATTEAEARHPDIVAA 67

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV     + + ++         +A+     +         ++L+ VL HV DP 
Sbjct: 68  ARDAGVPVHRTSGEVMAELTQTVTPQGLVAVCRFVHVPLEEAVRPGARLVAVLAHVRDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G +LR+A A   D ++ T       +    ++++G+L H+P    +   + +++    
Sbjct: 128 NAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVSINARFPETVRQAREA 187

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +   +   + L++   +   A + G E  GL P+  E A  +  + + G  ++LN+
Sbjct: 188 GLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLELADEVVRVPIYGRAESLNL 247

Query: 266 SNAAAVALYITQN-HF 280
           + AAAV LY +     
Sbjct: 248 ATAAAVCLYASARAQR 263


>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
          Length = 281

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 111/277 (40%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+E++   K  H                     +   +     + G H V  A
Sbjct: 31  MKRIDSVKNEQVKGWKKLHTK-------------------KGRDKAGRFLIEGFHLVEEA 71

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I  +L T+  +  L W+    +   +  V PQ + +I   E      A+   P
Sbjct: 72  LKA-KFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETETPQGIAAVCAIP 127

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      S   +++D V DP NIG ++R+A A    G++  +      ++ + +++
Sbjct: 128 APP---SMTTLSGQFLLIDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRAS 184

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P IR S +    +             +++      E + +  ALI+G EG+G+
Sbjct: 185 QGSIFHMPVIRGSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPE-FALIVGNEGEGV 243

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +  E +    ++ + G  ++LNV+ A  + LY  +
Sbjct: 244 QSELLEGSDQNIYIPIYGQAESLNVAVATGILLYYLK 280


>gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 260

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 87/283 (30%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++E++                  K +     +S+   +     L GVH +   
Sbjct: 1   MKSITSAQNEQL------------------KHLSKLLSQSKARREYGQTVLEGVHLLQVY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L          L           +    L     +  V  + + KI         +    
Sbjct: 43  LEAGYTPKQVYLPESKNTHPEIRNLISSLDEDC-ITWVGNEALSKITS-LNDADDVMTWI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  L    +    +VLD + DP N+G +LRSA A     I+         S  + +
Sbjct: 101 EIPPQGDLPLSGDC---VVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +  I            +        L   +   L Q   N   A + G EG 
Sbjct: 158 AGMGAHL-LLNIYSRVSLPQWLDTYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGS 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+  +  E       + M G  ++LNV+ AA V L+       
Sbjct: 217 GVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQRI 259


>gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
 gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
          Length = 256

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPF 91
           N   +   +   +   G + V   L    R++  +    +  AR                
Sbjct: 3   NSNPKRDLEEGLVL--GRNAVIELLK-GPREVECIYICDDVPARGQPISRIVALAKEARV 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
           PVK V  + +D +      HQG+A + A     T++             LL++ D + DP
Sbjct: 60  PVKRVDVRRLDTLANGL-NHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIEDP 118

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI+R+A A    G+I  KR     +A++ ++++GA+EH+P  R++NL   ++++ +
Sbjct: 119 HNLGAIIRTAEAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELKA 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G  +   +   Q       AL++G+EG GL    +ET  ++  L M G + +LN
Sbjct: 179 RGVWIYGADASGARWD-QTDLTGPSALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSLN 237

Query: 265 VSNAAAVALYITQNHFAK 282
            S AA + +Y       K
Sbjct: 238 ASVAAGILMYEAVRQRTK 255


>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
 gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
          Length = 277

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R H  +KK+      +R         L G+H + + L +    +  +++   +      
Sbjct: 6   SREHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVLLIVSESGSQHPEIS 65

Query: 84  DANLPHPFPVKTVP----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +      +         T+   +       G+                 +   ++L+
Sbjct: 66  QLLIHIDKDPQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNSFSILLE 125

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G++LRSA A   +G+  +   + + S    ++  GA   +      +L    
Sbjct: 126 GIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDLIQVA 185

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++        +  +      L        +  + G EG G+  +  ET      + MPG 
Sbjct: 186 RQFAGNV---VATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPMPGC 242

Query: 260 IKALNVSNAAAVALYITQNH 279
            ++LNV+ AAA+ L+     
Sbjct: 243 TESLNVATAAAICLFEKVRQ 262


>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 250

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
               ++ G ++V  AL       KI+   +   A  +            V+    + +D+
Sbjct: 2   SGLAWITGRNSVLEALRAGRKIEKIYIASSPHGAALQEIMSLAKAAHIVVEERDRKALDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V ++  HQG+A +  P+   + +               ++LD + D HN+GAI+R+A  
Sbjct: 62  LVPQQR-HQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAIIRTAEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  KR+S   +  + K+++GA+E++P + I N T  L+ +   GF  IG   + 
Sbjct: 121 AGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIGADMNG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +           + L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y T
Sbjct: 181 EADYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYET 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 304

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/257 (33%), Positives = 140/257 (54%), Gaps = 3/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   +   S   +        + FL+G H V AAL NP+RK    L      A       
Sbjct: 48  NPPARAFSSAAPRPSRGKVDADGFLWGRHPVLAALANPARKGMGRLLATEDRAAEIEREG 107

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDP 144
             +   ++ +  QT+++++   AVHQG+A +  PL   +L+        ++++LD + DP
Sbjct: 108 TANGHKIEVMDAQTLERMLPAGAVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLTDP 167

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI RSA+AF   GI+   R+SP  +  LAK+A+GA E +P  R++NL+ AL+++  
Sbjct: 168 QNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGATERLPCARVTNLSRALERLAD 227

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G++ +GL  DS++ LE  + +    L++G+EG G+R    E    +A + MPG  ++LN
Sbjct: 228 LGWRAVGLDGDSEELLENALDHRPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLN 287

Query: 265 VSNAAAVALYITQN-HF 280
           VSNAAAVALY       
Sbjct: 288 VSNAAAVALYEATRKQR 304


>gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
 gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
          Length = 247

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L     +  ++   K    R               V+    Q +D  
Sbjct: 3   EEIIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQ 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 63  TEGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P I+++NL   L+ +       +G + ++   
Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGEADHT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 183 LYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMRQ 242

Query: 280 FA 281
             
Sbjct: 243 RI 244


>gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103]
 gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103]
          Length = 259

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 17  SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIVIQLADRKWLDSQ 76

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P           L        L+VLD V DPHN+GA LRSA A  
Sbjct: 77  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 136 AHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 195

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 196 TVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 255

Query: 279 HFA 281
              
Sbjct: 256 QRN 258


>gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L     +  ++   K    +       A       ++    Q +D+    
Sbjct: 2   IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEKSDG 61

Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                 +A           D        +   L++LD V DPHN+GA LRSA A     +
Sbjct: 62  AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L Q
Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHTLYQ 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240


>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 248

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
              ++G++ VS AL    R+++++ A +    +   +           ++ +  + +D++
Sbjct: 2   KELVFGINAVSEALK-GQRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDEL 60

Query: 105 VGKEAVHQGLALETAPLLSPTL--------DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              E  HQG+  E        L                L++LD + DP N+GAI+R+A  
Sbjct: 61  C--EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAEC 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII     S   +  +++ ++GA+EH+  IR +NL + ++ +   GF  +G  + +
Sbjct: 119 AGVDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++           AL++G EG+G+R   +E    +  + M G + +LN S AAA+ +Y  
Sbjct: 179 RQSYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 LRQR 242


>gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
 gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
          Length = 244

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R           +   V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEANGIAVQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D        ++  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
 gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
          Length = 249

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
 gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
          Length = 255

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 14  SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 73

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 74  S-EGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 132

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 133 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 192

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 193 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 252

Query: 279 HFA 281
             +
Sbjct: 253 QRS 255


>gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513]
 gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 297

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 243

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
 gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686]
 gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 297

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 267

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/270 (38%), Positives = 153/270 (56%), Gaps = 11/270 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K +        H   K  Q             +++LYG+H V AAL NP R+  +L+AT
Sbjct: 1   MKKTEERNRPHGHGKGKPPQHPRGSGGGGGGGSSIWLYGIHAVCAALANPDRRARRLVAT 60

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133
             A   L          PV+T+    ID+++   +VHQG+AL   PL + T++ V     
Sbjct: 61  VEAAKSLP-----ATKVPVETMERSEIDRLLAPGSVHQGVALLVEPLPATTIEDVIRMAD 115

Query: 134 -----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++VLD V DPHN+GAILRSA AF    ++   R++P E+  LAKSASGALE +P
Sbjct: 116 GAPSALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHTPDETGTLAKSASGALERMP 175

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +R++N+   L+ +   GF T GL++D+ K L +   + K+ L+LGAEG+G+R  T+E  
Sbjct: 176 LVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMRRLTREHC 235

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  L M G +++LNVSNAAAVALY  + 
Sbjct: 236 DHLVRLPMCGEMESLNVSNAAAVALYEMRR 265


>gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1]
          Length = 260

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 11/258 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPH 89
           + + F    +  S  E   + G + V  A  +     K++ L   ++ +           
Sbjct: 2   QNREFENNIKTESDEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGIVNSIVREAKKQ 61

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
              +  +  + ++++  +   HQG+    A      ++ +              +LD + 
Sbjct: 62  DTVINYLSKEKLNQMS-QAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIE 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A      G+I  KR +   +A + K+++GA+ + P  +++N++  ++++
Sbjct: 121 DPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEEL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G        D +   +       + L++G EG G+    +E    +  + M G I +
Sbjct: 181 KDRGMWFACADMDGELMYKCN-LTGSLGLVIGNEGSGVSRLVKEKCDYVVSVPMKGDIDS 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LN S AA V  Y      
Sbjct: 240 LNASVAAGVLAYEVVRQR 257


>gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491]
 gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491]
          Length = 250

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 247

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L +   +  ++ A K    +      D  L     V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILASEPERFVEIYALKGRDDKRSTPIIDEALKFGISVQYMQRKALDSK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E  HQG+        +             ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  SKGE-QHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 259

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 95/251 (37%), Gaps = 6/251 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+ +    + +   Q     L G H V+ AL    R + +L+ TK  LA       
Sbjct: 10  NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V +V P  +  +         + +   P L      +  + L +  D V +P N
Sbjct: 68  RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQNPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A    G++     +   S  + +S  G+  H+                +  
Sbjct: 124 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                  + + K           AL++G EG+G+  +  +  T+  ++ M G  ++LNV+
Sbjct: 184 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 243

Query: 267 NAAAVALYITQ 277
            +A + ++   
Sbjct: 244 VSAGILMFELA 254


>gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 243

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str.
           870]
 gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str.
           Tulya]
 gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str.
           C68]
 gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 297

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  I LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus
           DSM 2366]
          Length = 254

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 9/252 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------- 88
           N +     +  N F++G+  V  A+      I  +   +     +  +            
Sbjct: 3   NSRRPARGKESNEFIFGIRAVIEAIKAGKE-IESIYIQRGLTGGIIMELKALLKEVDAPV 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  PV+ +   T+    G  AV   +  +    + P +     + L+++LD + D  N+G
Sbjct: 62  HNVPVEKLNRMTLKNHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRNMG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A       I+   + S   +A   K+++GAL  IP  R  NL      +   G Q
Sbjct: 122 AIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECGLQ 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +  +   +         A+++GAE +G+  +    A  +A + M G I +LNVS +
Sbjct: 182 IVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVSVS 241

Query: 269 AAVALYITQNHF 280
           A + LY      
Sbjct: 242 AGIILYEAIRQR 253


>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
 gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
          Length = 297

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
 gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
          Length = 259

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 109/262 (41%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEK 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I   E   QG+        +  LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSISNTE-NPQGIVSVINYFKTEKLDLENGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENLETVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     +     +    +  +K D + + +G EG G+       +     + MPG  
Sbjct: 179 LQRNGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
          Length = 270

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 99/257 (38%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   ++++  + +S+   +     + G H +  AL               A      
Sbjct: 8   SPKNPWIRQLRQLH-RSKGRREQGAFLVEGSHLLEEALGVGWPLRAVCYTFDWAERHPRL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A+LP     + V  + +  +   E+    +A+  +  ++         +L +V++ + D
Sbjct: 67  LASLPKHLRRQAVSLEVMAALSTTESPEGVVAVAVSRQIASP--PPEALRLGLVVETLQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++R   A   DG+  +      E+  + ++++G     P   +S+L   +Q   
Sbjct: 125 PGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAGQWFRRPPQVLSDLPAWIQSCR 184

Query: 204 SWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G Q +  +         +         +LG EG GL+  T + A +   + M   +++
Sbjct: 185 RQGIQVLAATLAPLATCYWDHDLTRPTLFLLGNEGAGLQESTIQLADAQVRIPMAAGVES 244

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+    + LY     
Sbjct: 245 LNVAMTGGLLLYEALRQ 261


>gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
 gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
          Length = 282

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 14/284 (4%)

Query: 9   SEKIFSLKDSHYA-----KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + +  SL           K R   +  +  + F+       + E  F+ G ++V  +L  
Sbjct: 2   NNRRVSLDKKERKCDPHEKRRSGDQSIRGERGFS-SGGRRKEEETCFIGGRNSVLESLRA 60

Query: 64  PS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              +K+F     K+       +              +T+D++  +   HQG+A    P  
Sbjct: 61  GQVKKVFIKSGKKDGRLLALAEEAERLGVAAIETEERTLDRLT-EGVRHQGVAASLKPYA 119

Query: 123 SPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L+       R   LL++LD V D  NIGAI+R+A       ++  K  S   +A   
Sbjct: 120 YADLEEVLSSCERKDPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAM 179

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+ASGA  ++P  +I N+     +           +      L Q      + +++GAEG
Sbjct: 180 KTASGAFAYLPVCQIGNI-RQTLEKLKERGFWAVGADMDGGDLYQADLKGPLVIVMGAEG 238

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           KG+ P T+        + M G + +LNVS AAA+ +Y       
Sbjct: 239 KGISPLTKRMCDFCVRIPMRGKVSSLNVSVAAALLMYEAVRQRN 282


>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 289

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 101/275 (36%), Gaps = 11/275 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            K+ ++  +          ++   K +++ +QK ++ ++       G+  V  AL+    
Sbjct: 9   PKTGRVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALDLGWT 60

Query: 67  KIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               + +     NA         + +   V     + ++ +  ++     + +       
Sbjct: 61  IQTLIFSKSKIGNAAIENTAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWHP 120

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +   +   + + LD V DP N+G I+R+A A    G+I     +   S    ++  G+
Sbjct: 121 FEMIKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGS 180

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P  R+          H  G         S      + KN  I L++G E +GL   
Sbjct: 181 IFSVPLYRLDESAFLNWSAHFKGMIVGTHLKGSLDYRTLDFKNGPIILLMGNEKQGLSDL 240

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +A +   G   +LN++ A AV LY  + 
Sbjct: 241 LTNRCDKLARIPQSGRADSLNLAVATAVMLYEIRR 275


>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 268

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 6/251 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+ +    + +   Q     L G H V+ AL    R + +L+ TK  LA       
Sbjct: 19  NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 76

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V +V P  +  +         + +   P L      +  + L +  D V DP N
Sbjct: 77  RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQDPGN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A    G++     +   S  + +S  G+  H+                +  
Sbjct: 133 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 192

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                  + + K           AL++G EG+G+  +  +  T+  ++ M G  ++LNV+
Sbjct: 193 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 252

Query: 267 NAAAVALYITQ 277
            +A + ++   
Sbjct: 253 VSAGILMFELA 263


>gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
 gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
          Length = 289

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 109/269 (40%), Positives = 168/269 (62%), Gaps = 6/269 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           +++ +  K         +    K  Q      +  ++    ++YG+HT+ AA  NP RK 
Sbjct: 21  NDRPYKKKRPDGKSSGGSFSKGKPWQK-----KSAAEDGPFYIYGLHTIEAAFKNPERKR 75

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L+ T+NAL RL  + NL    PV+   P+ IDK+VGK+AVHQG AL    L     + 
Sbjct: 76  HKLVVTQNALRRL-EERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDALPEYGPEE 134

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E  VLAK+ASGAL+ I 
Sbjct: 135 LKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTASGALDMIK 194

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++RI N++  +++M   G+Q I L S+  + +E     DK  L+LG+EGKG+R   +++ 
Sbjct: 195 HVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVREGVRKSC 254

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            ++A L MPG IK+LNVSNAA ++LY+ +
Sbjct: 255 DTLARLDMPGEIKSLNVSNAAILSLYVAR 283


>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 259

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 6/251 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+ +    + +   Q     L G H V+ AL    R + +L+ TK  LA       
Sbjct: 10  NARVKEWKKLQTR-KGRKQQGRYLLEGWHLVNEALQAD-RGLHELIGTKEELAAHPDIVA 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V +V P  +  +         + +   P L      +  + L +  D V DP N
Sbjct: 68  RFK--EVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQVATDLSGAWLFL--DRVQDPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A    G++     +   S  + +S  G+  H+                +  
Sbjct: 124 VGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLALYEGDLKKWFEDVKQAGY 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                  + + K           AL++G EG+G+  +  +  T+  ++ M G  ++LNV+
Sbjct: 184 PVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVA 243

Query: 267 NAAAVALYITQ 277
            +A + ++   
Sbjct: 244 VSAGILMFELA 254


>gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 272

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 116/259 (44%), Gaps = 11/259 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLP 88
           K +   + +    +     L G H +  A+    R I ++L   N          D    
Sbjct: 9   KEKHAQRNAVPQEEKAPPILAGRHAIIEAIKAG-RGINRILLADNVRGGGVNELRDLARE 67

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141
           H   V TV    +D +V ++  HQG     AP+    ++             LL++LD +
Sbjct: 68  HGITVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGI 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ 
Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRA 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G     ++  +       + L++G+EG+G+   T++       L M G I 
Sbjct: 188 LKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKIN 247

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN S A A+ +Y  Q   
Sbjct: 248 SLNASVAGAILMYEAQRQR 266


>gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33]
 gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 297

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  TRTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
 gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
          Length = 247

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L        ++   K    R       A       V+    Q +D  
Sbjct: 3   EDIIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 63  TEGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 123 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 183 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQ 242

Query: 280 FA 281
             
Sbjct: 243 RI 244


>gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis WUE
           2594]
 gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           H44/76]
          Length = 250

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 272

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L G H +  A+       +I      + +      D    H   V TV    +D +V +
Sbjct: 27  ILAGRHAIIEAIKAGRGINRILLADGVRGSGVNELRDLAREHGIMVDTVGRSKLDALVSQ 86

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG     AP+    ++             LL++LD + DP N+GA+LR+A A    
Sbjct: 87  DVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGVH 146

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G     ++  
Sbjct: 147 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEQGFWIAGADMGGEEIY 206

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      + L++G+EG+G+   T++       L M G I +LN S A A+ +Y  Q   
Sbjct: 207 DRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKINSLNASVAGAILMYEAQRQR 266


>gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
 gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
          Length = 249

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
 gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
          Length = 244

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P           L    +   L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRN 243


>gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 271

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 28/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            LI  K++E +  LK  H                     +H  + +   + GV  V  AL
Sbjct: 8   ELIKSKENECVKRLKKLHDK-------------------KHREEFKVFLVEGVKAVKEAL 48

Query: 62  NNPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +     I  L+ ++ A  + +          N      +  VP +  + I         L
Sbjct: 49  DYAIEDINLLIFSQEASKKYEEFFSRCISLLNSGKLKRIVQVPEKIFEHISTTTTPQGVL 108

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A  +       LD ++    ++V+D V DP N+G I+R A AF  + +IT        + 
Sbjct: 109 AECSFFDK--ELDVLKKHNRVVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYNP 166

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + +SA G++ H+  +R     + L+ ++  GF     +      + +   +D+ A+++G
Sbjct: 167 KVVRSAMGSMFHVDVVRERKKEEVLEALNKRGFALYVTTPYGDVDISKLSVDDRFAIVIG 226

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E KG+     E AT    + MPG  ++LN + AAA+ LY  + 
Sbjct: 227 NESKGVDVAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270


>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 260

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 26/281 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  +  +K     K                   H ++     + G   V  A
Sbjct: 1   MEIITSKDNSLVKEIKKLKEKK-------------------HRTKNNQFLIEGFRFVEEA 41

Query: 61  LNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  +   IF   + K+     D  + L     +  V  Q +  +   E      A+  
Sbjct: 42  LKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVLKLLSDTETPQGITAVV- 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L+        +++D V DP N+G I+R+A A    G+I TK      +    +
Sbjct: 101 ---DNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++ H+P I+ ++L + +  +   GF  +  S ++ K         K  + +G EG 
Sbjct: 158 STMGSIFHVPVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGS 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+  +    A     + MPG  ++LNVS AA V ++     
Sbjct: 217 GISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 257


>gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 249

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 249

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G H V  A+   +P  KI      K                 V+TVP   +D +   
Sbjct: 7   VIVGRHAVKEAITTGHPINKILIQDGVKKQQLEEILKHAKNQKIVVQTVPKSKLDHLA-- 64

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           EA HQG+A   AP     LD              L++LD + DPHN+G+ILR+A A   D
Sbjct: 65  EAPHQGVAALVAPYEYADLDKLLAQLKDKDGLPTLVILDGLEDPHNLGSILRTADAAGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G ++D+    
Sbjct: 125 GVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGTAADNATDY 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q   +  +A+++G EG G+    +E       + M G I +LN S AA++ +Y      
Sbjct: 185 RQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIYRKR 244


>gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae
           Sd197]
 gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 243

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 263

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 19/268 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALAR 80
           +R +   KK    + +       +  F+ G + V  A+ +    I ++     ++     
Sbjct: 3   KRTNPQPKKQMKGDNR-------QEEFIVGKNPVIEAIKSGH-PIHKIWIGDQSQKGQMT 54

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------Q 133
                       V+T P + +D++VG  + HQG+    A      +DA+           
Sbjct: 55  KLTQLAKEQNVLVQTAPKRKLDQLVGH-SNHQGVVASVAAYEYADMDALFAKAAAAHEAP 113

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VLD + DPHN+G+I+R+A A    GII  KR S   +  +AK+++GA+E+IP +R++
Sbjct: 114 FFLVLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVT 173

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   + ++   G    G  + ++    +   N  + L++G+EGKG+    +E    +  
Sbjct: 174 NLARTMDELKKQGLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVS 233

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M G + +LN S AA++ +Y   +  A
Sbjct: 234 IPMKGRVTSLNASVAASLLMYEVFHKRA 261


>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 286

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++   K +   +       G+  V  AL++    I  L+  K        + 
Sbjct: 21  SNPLVKDIKALTLK-KFRDRERAFMAEGLKLVLDALDSGW-AIRTLIYAKAGRGNAAVEK 78

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V  V  + +  I  ++     + +     L       +   L + LD V
Sbjct: 79  AAARTVAAGGLVLEVSEKVLSAITRRDNPQMVVGVFEQRWLPLKEVTPKGEDLWVALDRV 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+  A    G+I     +   S    ++  G++  +P  R         +
Sbjct: 139 RDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPLARADEAAFLAWR 198

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            H  G         S      +     + L++G E +GL  K  E    +  +   G   
Sbjct: 199 EHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDKLAEACDRLVRIPQAGRAD 258

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  V LY  + 
Sbjct: 259 SLNLAVATGVMLYEIRR 275


>gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
          Length = 270

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------LDWDANLPHPFPVKTVPPQT 100
              LYG+H V  AL   SRK   +  ++               D        ++    + 
Sbjct: 1   MDVLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVRLRFENREQ 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           + ++    A HQG+          T++         +  LL+ LD V DP N+GA+LRSA
Sbjct: 61  LTRMAKTHA-HQGVVAVVRERSFLTIEDLMAAPADGHPHLLLALDGVEDPQNLGALLRSA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                DG++  +R S   SAV  K+++GA EHI   R+ NL  AL+++       +GL  
Sbjct: 120 DGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDE 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +         ++LG EG+GL    ++T   +  + M G + +LNVS A AV LY
Sbjct: 180 RGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLY 239

Query: 275 ITQNHF 280
                 
Sbjct: 240 EAARQR 245


>gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02]
 gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18]
 gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140]
 gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1]
 gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
 gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
          Length = 250

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
 gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 13/242 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + +  AL +  R I +L+ +   K    +            ++ V    +D+I   
Sbjct: 8   IEGRNPIIEALRSD-RPIDKLMISNTSKEGSIKKIIGMAKEKNVVIQYVDKHKLDEISTS 66

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + HQG+    +      L+               ++LD + DPHN+G I+R+A A    
Sbjct: 67  HS-HQGVIAVVSDYKYYELEDLLAIARERGEDPFFIILDEITDPHNLGTIIRTADAVGAH 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S   ++V+AK+++GA+E++P  +++N+ + ++++   G              
Sbjct: 126 GVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTNIANTIKQLKKEGLWIAAA-DMDGGVF 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++     +AL++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 185 YEQDLTGPLALVIGSEGFGVSRLVKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQR 244

Query: 281 AK 282
            K
Sbjct: 245 MK 246


>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
 gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 112/282 (39%), Gaps = 23/282 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           N+I  K ++KI   K                      K++  ++ +   + G   ++ AL
Sbjct: 3   NIIKSKDNDKIKYTKSL-------------------LKTKGRNKEKKFIIEGYRILTLAL 43

Query: 62  NNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
              ++  +  +     K    ++  +        +     +   ++V  E     LA+  
Sbjct: 44  ECDAKLEYVFINEDFEKKQDHKVLLEELENKNIKIYKTSNKIFSEMVDTENTQGILAVLR 103

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                   +  ++ + +++LD + DP N+G I+R+A +   D II  K      +  + +
Sbjct: 104 YKERDLVNNINQDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIR 163

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++     I  +   +A+  + +  F  +     ++    +   + KIAL++G E  
Sbjct: 164 STMGSIF-DMNIIQTTQDEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGNEAN 222

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+  +    +  +  + + G  ++LN + +AA+ +Y  + + 
Sbjct: 223 GINDELISKSDKLVKIPIYGNAESLNAAISAAILMYEIKKYL 264


>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1]
 gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1]
 gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1]
 gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
          Length = 297

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKDGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
 gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
          Length = 246

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D            L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
          Length = 243

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A   H   ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
 gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
          Length = 270

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 116/284 (40%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  H                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
           +     I  ++ ++ A  R          L     +K V   P  + + +   +  QG+ 
Sbjct: 48  DYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V D + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDK-DINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + K  +++G 
Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + A     + M G  ++LN + AA+V LY  +  
Sbjct: 227 ESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270


>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 293

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      ++     
Sbjct: 29  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 87

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + +             + + + + LD V D
Sbjct: 88  ARTFAKGGLVLEVTEKIMAAITRRDNPQMVVGVFEQQYRPLASLKPKGNDVYIALDRVRD 147

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A S  G+I     +   S    ++  G++  +P  ++S       +  
Sbjct: 148 PGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVFSMPLYKVSEADFLNWRKG 207

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + L++G E +GL          +A +   G   +L
Sbjct: 208 VSGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 267

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 268 NLAIATGVMLYEIRR 282


>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 252

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++ + K  H                     +   +     + G H V  A
Sbjct: 1   MKQIDSVKNPQVKAWKKLH-------------------NKKDRDKQGLFMVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N    + +L+  ++      W+ +      +  V    I  +   E     +      
Sbjct: 42  IKN-KDCVKELIIRESIEVPAQWNID---GIEITVVNEAIIKLLSDTETPQGII---AVC 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   + +  +Q +++LD V DP N+G I+R+A A   D II  +      +  + +S 
Sbjct: 95  FQTKHAEIIHTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA+ H+P ++   L                   + K     +  N+  ALI+G EG G+
Sbjct: 155 QGAIFHLPIVKGDLLEMISLLKERGIAVYGTSLQNGKVYTCVKPSNE-FALIVGNEGNGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K  E      ++ + G  ++LNV+ A+ + LY  +
Sbjct: 214 SEKVLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
 gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
          Length = 246

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D            L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 261

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 6/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDW 83
           +   K +++  Q+ +   +     + G+  V+ A+   +     ++A +   ++ A    
Sbjct: 8   NPTIKALRALRQR-KARDEQGRYLIEGIRPVAEAIQCGAPLDMLVVAPELLNSSFAHELI 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D        + TV       +  K+   QGLA       +P  +        +VL  V D
Sbjct: 67  DTYAAGGGKILTVSAAVFSSLADKD-NPQGLAAVGRIHYTPLPNLSPAPVGWVVLVEVAD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      G+I     +        +++ GAL     I  ++  D L    
Sbjct: 126 PGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGALF-SQQIARTSWPDLLTWAR 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +G S               + L+LG+E  GL  +       +  + M G   +L
Sbjct: 185 QHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDSL 244

Query: 264 NVSNAAAVALYITQN 278
           N++ AA + +Y    
Sbjct: 245 NLAVAAGILMYEATR 259


>gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 255

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 70

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 287

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 100/275 (36%), Gaps = 11/275 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            K+ K+  +          ++   K +++ +QK ++ ++       G+  V  ALN   +
Sbjct: 9   PKTGKVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALNLGWK 60

Query: 67  KIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               + +          +       +   V     + ++ I  ++     + +      S
Sbjct: 61  IQTLIFSKSKISNTAIENTAAHTVANGGLVIKASQKVMESIARRDNPQTVIGIFKQQWQS 120

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +   +   + + LD V DP N+G I+R+A A    G+I     +   S    ++  G+
Sbjct: 121 LEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMGS 180

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P  R           H  G         S      + KN  + L++G E +GL   
Sbjct: 181 IFSVPLYRFDESAFLNWSTHFKGMIVGTHLKGSIDYRTIDFKNGPVILLMGNEKQGLPDI 240

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +A +   G   +LN++ A A+ LY  + 
Sbjct: 241 LANCCDKLARIPQSGRADSLNLAVATAIMLYEIRR 275


>gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
 gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
          Length = 265

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L G H ++ A+    R I ++L         R   D    H   V  V    +D    +
Sbjct: 19  ILAGRHAITEAIKAG-RGINRILIADGMHGGVRELRDLARAHDITVDIVSRAKLDA-AAE 76

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A H G+    AP+    ++             LL++LD + DPHN+GA+LR+A A    
Sbjct: 77  GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G         
Sbjct: 137 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEDGFWIAGADMAGSDTY 196

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      + L++G+EG+G+   T+E       L M G I +LN S A A+ +Y      
Sbjct: 197 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 256

Query: 281 A 281
            
Sbjct: 257 T 257


>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 265

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 15/272 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL          ++   + +++  Q+     +       GV  V   +    + + 
Sbjct: 4   EKITSL----------HNPRIQSIRALIQRREERRERGWFVAEGVRLVEEGVQAGWQAVM 53

Query: 70  QLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L +   +         L      V  VP   + +I   E     L +    +       
Sbjct: 54  ALYSADLSARGQALLPALHAQGAEVFEVPASLLKQISDTETPQGILTVFARRVY----SL 109

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 +++ D++ DP N+G +LRSA A     +  T     + S  + ++  GA   +P
Sbjct: 110 PEPLDFVVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +S       +    G       +++  P         +AL++G E +G   + +   
Sbjct: 170 VQEVSLEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLEMRALV 229

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + MPG  ++LN + AA + L+      
Sbjct: 230 DGNITIPMPGKSESLNAAVAAGILLFEVVRQR 261


>gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
          Length = 240

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L     +  ++   K    +       A       ++    Q +D+    
Sbjct: 2   IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDG 61

Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                 +A           D        +   L++LD V DPHN+GA LRSA A     +
Sbjct: 62  AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L Q
Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLCQ 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240


>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
          Length = 252

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++ + K  H                     +   +     + G H V  A
Sbjct: 1   MKQIDSVKNPQVKAWKKLH-------------------NKKDRDKQGLFMVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N    + +L+  ++      W+ +      +  V    I  +   E     +      
Sbjct: 42  IKN-KDCVKELIIRESIEVPAQWNID---GIEITVVNEAIIKLLSDTETPQGII---AVC 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   + +  +Q +++LD V DP N+G I+R+A A   + II  +      +  + +S 
Sbjct: 95  FQTKHAEIIHTAQKVLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA+ H+P ++   L                   + K     +  N+  AL++G EG G+
Sbjct: 155 QGAIFHLPIVKGDLLEMISLLKEREIAVYGTSLQNGKVYTCVKPSNE-FALVVGNEGNGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K  E      ++ + G  ++LNV+ A+ + LY  +
Sbjct: 214 SEKVLEQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
 gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
          Length = 246

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLISELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 270

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  H                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLHDK-------------------KYREEFRSFIIEGLKLVKEAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
           +     I  ++ ++ A  R          L     ++ V   P  + + +   +  QG+ 
Sbjct: 48  DYQIECINLVMFSQQAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G 
Sbjct: 167 TIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 227 ESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 255

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 13/255 (5%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF--PV 93
           N +     +  N F++G+ +V  A+      I  +   +     +  +   L      PV
Sbjct: 3   NSRRPARPKENNEFIFGIRSVIEAIKAGKD-IESIYIQRGLTGGIILELKALLKDVDAPV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             VP + ++++   +  HQG+    + +    ++ +         + L+++LD + D  N
Sbjct: 62  HNVPVEKLNRMT--QKNHQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDGITDVRN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI R+A       I+   + S   +A   K+++GAL  IP  R  NL      +   G
Sbjct: 120 MGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q +  +  +   +         A+++GAE +G+  +    A  +A + M G I +LNVS
Sbjct: 180 LQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVS 239

Query: 267 NAAAVALYITQNHFA 281
            +A V LY       
Sbjct: 240 VSAGVILYEAIRQRT 254


>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
           HTCC2999]
          Length = 247

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            +  +LYG+H ++A L    ++I +L   K   +       +        ++    + +D
Sbjct: 3   QQQDWLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLD 62

Query: 103 KIVGKEAVHQGLA--LETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                E+    +A       L    LD          L+VLD V DPHN+GA+LRSA A 
Sbjct: 63  DKSKGESHQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  K  S S +A + K A GA + IP I+++NL   L ++       +G + +++
Sbjct: 123 GVDAVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEAR 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY   
Sbjct: 183 QSVFDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEIV 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
 gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
          Length = 248

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K     RL+    L       V+ +  +T+D+ 
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E  HQGL  +     + +            +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  ADGE-QHQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   + V  K A GA E +P + ++NL   L+++   G   IG + ++  
Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        IAL++GAEG G+R  T+E   ++  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
 gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
          Length = 263

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K ++   +K           + G+  V         KI  L+ T     +   
Sbjct: 8   SPQNNVIKNIKELQKKKSARKSEGLFVIEGIRGVKEI--PSHVKIKYLITTSEVDEKELG 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V     + I   +      QG            +     +   +VL+++ D
Sbjct: 66  AVKAEERLEVS----KEIYNSISDTQSPQGAMAVAYMPTYDLVHFNIEAGHYLVLENLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-M 202
           P N+G I+R+A AF   G+  TK      S  + +S   +L H+P +    +   +    
Sbjct: 122 PGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIEEEIDTYMDFLK 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                          KP+      +K+A+I+G EG G+  + +E +     + MPG  ++
Sbjct: 182 QKGVTLYTTALIPGAKPIYDVTFEEKVAIIIGNEGNGVSERVKEASDHTVIIPMPGAAES 241

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + A ++ +Y       K
Sbjct: 242 LNAAIATSICMYEITRQCQK 261


>gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
          Length = 286

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 21/291 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKM---QSFNQKSRHTS--QPENLFLYGVHTVSAAL 61
           +++ K  + +D    K R N++  K+        + + + +  +     + G + V  AL
Sbjct: 2   RENTKAGNKRD----KNRENNKGNKREINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 57

Query: 62  NNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               R I  L  + + L                 +K V  + +D +    AVHQG+    
Sbjct: 58  KA-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 115

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +       +    +  +++LD V DPHN+G+I+R+A  F   GII  KR S S
Sbjct: 116 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 175

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+
Sbjct: 176 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGACAI 235

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           I+G EGKG+   T +    +  + M G I +LN S A  + +Y       K
Sbjct: 236 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRLK 286


>gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 250

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
 gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
          Length = 248

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + + +L A     +   +   +       PV  V    +D +  
Sbjct: 6   LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLCR 65

Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                       A      L   LD +    LL++LD + DPHN+GA LR A A     +
Sbjct: 66  HARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++       +G     +  L  
Sbjct: 126 IAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLFH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 +A ++G EG+G+R  T+E   ++  + M G +++LNVS +  + L  T+   A
Sbjct: 186 YDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244


>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 260

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +   ++ ++ ++     + G   V  A+       + +L         + 
Sbjct: 6   SKENTIYKEAKKLKER-KNRNKINKYVIEGFRLVDEAIKASLDIDYLILTQVGYEKLDNY 64

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            + +      V  +       +   E     +A+      +            +  D V 
Sbjct: 65  INKDKIEKQKVYCITDNLFKDLTSTENPQGIIAIVNMENKNLDF----QGDFYLFCDKVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   +GII +K      +    +S  G+L ++P     N    ++ +
Sbjct: 121 DPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYYDDNEFSLIKSL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF+ I  S +S K   +E    K  L +G EG G+  +  + A     + MPG  ++
Sbjct: 181 KKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ +Y     
Sbjct: 241 LNVAIATSIIIYEKIRQ 257


>gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
 gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQVASRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  ++  L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
 gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A   H   ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 251

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 106/277 (38%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     L G H V  A
Sbjct: 1   MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + + +  + +L+  +       W+       PV  V    +  I   E      A     
Sbjct: 42  IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMKAISSTETPQGIAA--VCR 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            LS  L+ V+ + L+   D V DP N+G ++R+A A   D +I  +  +   +  + ++ 
Sbjct: 96  QLSTELEGVKTALLI---DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P ++       + +    G    G + ++        ++   AL+ G EG G+
Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           RP      T   ++ + G  ++LNV+ AA + LY  Q
Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 252

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++K+   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L      I Q+   +N LA+L              V  V    +  +   E+    +A  
Sbjct: 40  LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSESPQGLIAEV 98

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                     A +     ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 99  AIIEEVIDFSASK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+   R++          +         S +    +        AL++G EG
Sbjct: 155 RSMQGSNFHLAIARMNEEECFAALKQAKISILTTTLSANSVSYKTVE-ESSFALVMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 261

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLD 82
           +   K +++  Q+ +   +     + G+  V  A+   +  +  ++   +    + A   
Sbjct: 8   NPTIKMLRALRQR-KARDEQGRYLIEGIRLVGEAIQCGA-PLEMIIVAPDLLTSSFAHEL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +  +     V TV  + +  +  KE    G+        +P  D V      + L  V 
Sbjct: 66  VEHYIAGGGRVLTVSAEVLGSLASKEHPQ-GIIGVGRARYTPLADLVAGVNGWVALVDVA 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A      G+I              +++ GAL     I  +   + L   
Sbjct: 125 DPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALF-SQQIARAGWDELLAWR 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     IG S               + L+LG+E +GL  +      ++  + M G   +
Sbjct: 184 QARSLPVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDS 243

Query: 263 LNVSNAAAVALYITQN 278
           LN++ AA + +Y    
Sbjct: 244 LNLAVAAGILMYEITR 259


>gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ECD227]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 259

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 107/258 (41%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K++ + ++K +           G+         P+ +I  L  +++ + + + 
Sbjct: 4   SSANARVKQVMNLSKKVKARKTSGLFVTEGLRMFKEI---PADRIDSLFVSEDFI-KDEA 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVN 142
              L      +TV  +    +   +     LAL       +  L A      LMVL+++ 
Sbjct: 60  HKRLLAGMKYETVSREVFKVMSDTQTPQGILALVRQHAFRTEDLLAAPGPAFLMVLENIQ 119

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+       G++ ++  +   +  + +S  G++  +P++   +L  +L+ +
Sbjct: 120 DPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTEDLPASLKAL 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + G +      + +   E+E        ++G E  GL  +T   A +   + M G +++
Sbjct: 180 KAGGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVKIPMKGKVES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA+V ++      
Sbjct: 240 LNAAVAASVLMFEAARQR 257


>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
 gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
          Length = 310

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A +R NH   K+ ++  ++       E   + G + V   L          +     A  
Sbjct: 41  AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADE 100

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL    +       P+  VP   +D++     +HQG+AL+  P      D          
Sbjct: 101 RLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDTP 159

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  R
Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVAR 219

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT AL+     G + +GL +     ++    +D I +++G+EGKGL    ++T   +
Sbjct: 220 ATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEV 279

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 280 VSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 310

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A +R NH   K+ ++  ++       E   + G + V   L          +     A  
Sbjct: 41  AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVEADE 100

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL    +       P+  VP   +D++     +HQG+AL+  P      D          
Sbjct: 101 RLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDTP 159

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  R
Sbjct: 160 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVAR 219

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT AL+     G + +GL +     ++    +D I +++G+EGKGL    ++T   +
Sbjct: 220 ATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEV 279

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 280 VSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           CFT073]
 gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei
           Ss046]
 gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UTI89]
 gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC
           O1]
 gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           E24377A]
 gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS]
 gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC
           8739]
 gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI1]
 gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           ED1a]
 gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           55989]
 gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI39]
 gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UMN026]
 gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B
           str. REL606]
 gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9]
 gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354]
 gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088]
 gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           H736]
 gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli
           CFT073]
 gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T]
 gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           UTI89]
 gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           536]
 gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS]
 gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E24377A]
 gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC
           8739]
 gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           SMS-3-5]
 gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989]
 gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1]
 gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88]
 gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39]
 gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a]
 gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026]
 gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82]
 gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of
           23S rRNA 2'-O-ribose G2251 methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1]
 gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella
           flexneri 2002017]
 gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042]
 gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088]
 gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354]
 gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           IHE3034]
 gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UM146]
 gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W]
 gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli
           DH1]
 gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           85-1]
 gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           110-3]
 gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           153-1]
 gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           16-3]
 gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC
           9905]
 gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           WV_060327]
 gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           EC4100B]
 gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
 gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11]
 gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482]
 gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120]
 gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263]
 gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489]
 gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863]
 gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           57-2]
 gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           60-1]
 gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           117-3]
 gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. 1044]
 gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
 gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
 gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D            L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 297

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + L++G E +GL          +A +   G   +L
Sbjct: 214 FSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
 gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 254

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 24/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   +                  +   K  +      +   +     + G H +  A
Sbjct: 1   MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFIVEGFHLIEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +   ++ Q++  +     + W  +      V +V  +   +    + V          
Sbjct: 43  LKH-KEQVLQIIVREGVDLPMLWPIDGIAIVEVTSVVAKEFAETETSQGVFAICKQPV-- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +A  + + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A
Sbjct: 100 ---LEEEAKTSWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R                       +   P          A+I+G EG G+
Sbjct: 157 QGSHFHIPVVREELTECVDFLQDQGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGI 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +P+          + + G  ++LNV+ A  + LY
Sbjct: 217 QPQLLAMTDQNIIIPILGQAESLNVAVATGIVLY 250


>gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185]
 gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185]
          Length = 243

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 268

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 4/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWD 84
            +   K +    +K+R   +       G+  V  AL         L   +  + A L   
Sbjct: 11  QNPLIKNIGILLEKARERRKQGLFVAEGLIEVGMALRAGYEVEQLLYDPEITSFAALQSL 70

Query: 85  ANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             LP   P  +  V    ++KI  +  V   +A+   P  +    +   + L++VL+ V 
Sbjct: 71  PKLPANLPQKLIEVSGSVMEKIAYRANVPNVVAVLKTPERALNNFSPGKNPLILVLETVE 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+GAILR+A A     +      +   +  + +++ GA+  +P   ++   DAL  +
Sbjct: 131 KPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTVPVFTVAAA-DALNWL 189

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +    ++  P      +  IA ++G E  G+     E A     + M G + +
Sbjct: 190 QMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEAAQQRVIIPMHGQVDS 249

Query: 263 LNVSNAAAVALYITQNHFA 281
           +NVS + A+ L+       
Sbjct: 250 MNVSVSTAILLFEALRQRK 268


>gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
 gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
          Length = 246

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D        +   L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLESVDMPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 276

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   ++   A  R   +        V       ++ I  
Sbjct: 32  LIYGFHAVNARLWQNPKSITELYVQQDKSDARTREVLEKAADENVRVHFADASRLNAIA- 90

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+A           L   LD +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 91  KGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACLRTADAMGVHA 150

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L ++  +G   IG  +  +  L 
Sbjct: 151 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIGTDTGGESDLY 210

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 211 HTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETRRQR 269


>gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13]
 gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
 gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
          Length = 297

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + L++G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 266

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 5/256 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84
           +   K      ++ ++  +     + G   +  AL      I            AR    
Sbjct: 8   NPRIKAAAELKER-KNRERTGTFLIEGAREIERALAAGLEVIEAYCGEPLSPEEARAVAH 66

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +      V  +    + KI  +E     LA+   P  S       ++ LL+V   +  P
Sbjct: 67  LSRALGLEVHELSEAALKKISSREHPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LRSA A   D ++           V+    S  +        +     L  +  
Sbjct: 127 GNLGALLRSADAAGADAVLVAGGVDLYSPQVIRN--STGVVFSLPTFAAPEQAVLDWLLQ 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  +  + +          +A++LG E +GL     E A     + M G   +LN
Sbjct: 185 HNIPIVATTPHTHQTYWDVDLRGPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLN 244

Query: 265 VSNAAAVALYITQNHF 280
           VS  AA+ LY      
Sbjct: 245 VSVTAALMLYEAVRQR 260


>gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 250

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 297

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 84/255 (32%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++       +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNPQMVAGVFEQQYHQLASLKPKGNDVYIALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  + L++G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 244

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 8/243 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        ++   ++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FAK 282
             +
Sbjct: 242 RGE 244


>gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
 gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
          Length = 243

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I ++L +++ +        D        V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALKSG-RSIQRILVSEDRVKTGLADIVDLAKSQGIEVRPTPVKQMNKY-D 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP ++I N+T  ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
 gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
          Length = 264

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 101/282 (35%), Gaps = 22/282 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS-- 58
           M  I  K                  +++  K++ S  Q+ ++  +     + G+ ++   
Sbjct: 1   MEFIQSK------------------DNKTIKRIISLRQR-KNRQKNGEYIVEGIRSIRDI 41

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AA+      + +    ++       D +     P         DK V      QG+    
Sbjct: 42  AAMGAVKTIVIRESKAQDKNILDLLDLDTVQSVPKYIAQDPVFDK-VDNTVNGQGVVAIV 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +              L + LD V DP N+G I+R+AVA    GI   K      +    +
Sbjct: 101 SKPTYDIESISIVDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S   AL  IP      LT     +      +   + +   P        +  L+LG EG 
Sbjct: 161 STMSALHKIPLYEDITLTLLHDMVTESNMTSYVTALEHSNPYHTVRYAKRTMLVLGNEGN 220

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+ P+     T+   + M G +++LNVS AAA+ +Y  Q   
Sbjct: 221 GVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262


>gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica W22703]
          Length = 246

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         + LL+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 261

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 26/281 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLI  K +  I  ++                     +K ++  Q E   + G   V  A
Sbjct: 1   MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  +    L+    K      +    +     +  V  + + ++              
Sbjct: 42  LKSTFKISHVLVGESAKEKCNSFNIFNIVSENTKISLVKDEILKELCETNNPQG----II 97

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A + +  ++    S   ++ D V DP N+G I+RSA A    G+I TK      +    +
Sbjct: 98  AIVDNKIINIEDKSGFYVLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++  IP I  +          S GF+ I  S D++          K+ + +G EG 
Sbjct: 158 STMGSIFKIPIIEDNEFEIINVLK-SKGFKLIVSSLDTENNFFDIDLTGKVIICVGNEGN 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+  +          + MPG  ++LN   AA++ +Y     
Sbjct: 217 GVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQ 257


>gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
 gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
          Length = 263

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 103/256 (40%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDW 83
            +   K+++  +  ++   + +   L G H ++ A  +N P   +   +  +N+ + L  
Sbjct: 6   QNPLVKQIRKLH-SAKERHKQQLFVLEGTHLIAEACSVNYPLETVCCTIDWQNSHSELWQ 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +        V+ V  + +  +    A         A +     + +  + L + L+ + D
Sbjct: 65  NVCNA-CHRVEIVSQEVLAAM----ATTVQPDGVVAMVKRCEENPIPITGLALALETIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+  +      +   + ++++G    +      NL D +Q   
Sbjct: 120 PGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSHNLKDTVQDCQ 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +     ++    Q   +    ++LG EG GL       A     + +   +++L
Sbjct: 180 RGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDDLATMANIQVKIPLSPQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +AA+ LY  Q  
Sbjct: 240 NVAISAALILYEAQRQ 255


>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
 gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
          Length = 243

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL +       L++       L    NL       V+  P + ++K    
Sbjct: 4   YIVGRNAVKEALKSGRSIQRILVSEDKVKTGLADIVNLAKSQGIEVRPTPVKQMNKY-DL 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  EVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E IP ++I N+   ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVVQTIKQLQKQGFWVMGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 261

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+++  N+K +H    ++  + G+  V  AL +   KI  L  ++    +   
Sbjct: 7   SKENSIIKEVKKLNEK-KHRDLKKSFIVEGLRFVREALESD-FKIQYLFVSEKNYDKFIL 64

Query: 84  DANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                     F V  V    +  I   +          A +    +         M++D 
Sbjct: 65  KELKELIKKEFQVIKVTESILKDICNTQTPQG----IVAVVQYKEVAWKLTKGFYMLVDK 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+I TK      +    ++  G++  IP I   +    ++
Sbjct: 121 VQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDNFSKIK 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   GF+ I  S D++        N+K+ + +G EG G+  K  + + +   + MPG +
Sbjct: 181 ELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIPMPGNV 240

Query: 261 KALNVSNAAAVALYITQN 278
           ++LNV  AAA+ ++    
Sbjct: 241 ESLNVGVAAAIMMFEYVR 258


>gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
 gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
 gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
          Length = 240

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L     +  ++   K    +       A       ++    Q +D+    
Sbjct: 2   IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDG 61

Query: 108 EAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                 +A           D        +   L++LD V DPHN+GA LRSA A     +
Sbjct: 62  AVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L Q
Sbjct: 122 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 182 SKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 240


>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
           657]
          Length = 259

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +K+D + + +G EG G+       +     + MPG  
Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKDD-MIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 297

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++ +     +             + + + + LD V D
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNLQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  I LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum
           DSM 180]
          Length = 247

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G+H+V AAL   +  + ++   +    R      D        ++ V    +++    
Sbjct: 7   VGGIHSVRAALKFGAEGVDEVWLERARRDRRLQELADLAREAGIRLRQVERAELER-AAA 65

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG         S T       LD +     L++LD V DPHN+GA LR+A A    
Sbjct: 66  GVNHQGALAWVRVPSSRTESDLAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQ 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K ASGA E +PY++++NL   +  +   G   IG + ++   L
Sbjct: 126 AVIAPKDNAVGLTPVVCKVASGAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDEL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L++GAEG GLR  T+E    +  L M G +++LNVS AA V LY      
Sbjct: 186 YAADLTGPLGLVMGAEGSGLRRLTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245


>gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
 gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
          Length = 245

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPIVHEIEALGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L     S  L++LD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRI 243


>gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           OX99.30304]
 gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M6190]
 gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M13399]
 gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M0579]
 gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           ES14902]
 gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           961-5945]
 gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           G2136]
 gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M04-240196]
 gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           NZ-05/33]
          Length = 250

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 266

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 87/256 (33%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++     KSR   +     + G+  ++ AL         L   +          
Sbjct: 10  QNTLVKQIVLLKDKSRERKKTGLFIVEGLREITLALKGNYNLKTILFYPELCDVNTLESL 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  +  +      KI  +E     +A+ +T       L     + L++V +    P
Sbjct: 70  GNL-NAEIIEISKDVYTKIAYRETTEGIIAIAKTKENNFENLSFNTKNPLILVAEAPEKP 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAILR+A A + D +I                +S        I   +    +  ++S
Sbjct: 129 GNIGAILRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCLFTNQIATGSTEAIINFLNS 187

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G           +   ++      A+++G E  GL    +  A     + M G I ++N
Sbjct: 188 KGINIYAAILQESQEYHKQDFTTPTAIVVGTEATGLSNYWRNAAKKNIKIPMQGAIDSMN 247

Query: 265 VSNAAAVALYITQNHF 280
           VS AA + ++  +   
Sbjct: 248 VSVAAGILIFEAKRQR 263


>gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 247

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 20/256 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + +  QKS    +     + G   +          + + +  KN         
Sbjct: 10  QNAKIKHVVALQQKSSLRREEGLFVVEGQREIEHCKACGYEVVEEYIRDKN--------- 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V PQ  +K+  + +    +A+      +     ++ S L++VL+ V  P 
Sbjct: 61  ----------VSPQVYEKMAYRGSTEGHIAVVRCKEHTLEKLQLKESPLIVVLESVEKPG 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRSA A   D +I     +   +  + +++ G +       + +  + +  +   
Sbjct: 111 NLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASIGGVF-CVPTAVCSSQECIAFLKEH 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +                   A+++G E  GL  + +E A +   + M G + +LNV
Sbjct: 170 GIKILTAQLQDSYEYYDYDMTQGTAIVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNV 229

Query: 266 SNAAAVALYITQNHFA 281
           S +AA+ +Y       
Sbjct: 230 SVSAAILMYEAVRQRN 245


>gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
 gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
          Length = 265

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 11/258 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPH 89
             +  + K  +  +     + G + V  A  +     K++ L   ++   R        H
Sbjct: 8   HDKKMHDKKSYDKKENENIIEGRNAVMEAFRSGKPVDKLYVLDGCQDGAVRSIIREARKH 67

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
              +  V    ++++  +   HQG+    A      ++ +            L++LD++ 
Sbjct: 68  DTILNFVEKDRLNQLS-ETGKHQGVIASVAAYEYAEVEDMLKLAEEKGEDPFLIILDNIE 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A      G+I  KR +   +A +A++++GAL + P  +++NL   ++ +
Sbjct: 127 DPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNLVKTMEDL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +    D     +  +K   I L++G EG+G+    ++T    A + M G I +
Sbjct: 187 KKKGLWFVCADMDGDVMYDVNMK-GPIGLVIGNEGEGVGRLVKDTCDFTARIPMKGDIDS 245

Query: 263 LNVSNAAAVALYITQNHF 280
           LN S AA V  Y      
Sbjct: 246 LNASVAAGVLAYEIVRQR 263


>gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
 gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
          Length = 266

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F++G H V A L     ++ Q+      ++   +   +         + V  + +D    
Sbjct: 24  FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLD--SR 81

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+    +     + D              L++LD V DPHN+GA +R+A A   
Sbjct: 82  VAGVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S + + V  K A GA E +P++R++NL   L+ +   G   +G + ++   
Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEGKG+R  T+E    + ++ M G +++LNVS A+ V LY     
Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQ 261

Query: 280 FA 281
            +
Sbjct: 262 RS 263


>gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 247

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K    +      D        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILAKEPERFLEIYALKGRDDKRLTPIIDEARKFGISVQFMQRKALDNK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              E     +A   A       D     A   +  L+VLD + DPHN+GA LRSA A   
Sbjct: 63  SKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             II  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++   
Sbjct: 123 HAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDTH 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 183 VFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLRQ 242

Query: 280 FA 281
             
Sbjct: 243 RN 244


>gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 252

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 107/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSIKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +    I  ++ +    QG+      
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-AEISHLISETMTEQGVFAVVTI 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D +I  +  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  +  K L    K + +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ QE  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQERLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 252

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+     + +LL +K+     +W   L   + V  +  +    I          A+    
Sbjct: 42  LHQDGLVV-ELLVSKDVSVPEEW---LKGNYDVFEISTEISHFISETMTEQGVFAVVATT 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +    L+++D V DP N+G ++R+A A   D +I  +  +   +  + +S 
Sbjct: 98  EPDMMLLYGKK---LLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ +                  +     K L    K D +ALI+G EGKG+
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + Q   +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YG+H VSA L+   ++I +L   +N    RL             V  +    ++ +  +
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   + +         L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus
           KT]
 gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 251

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V + L   +  + ++L  ++   A  +            V  V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+         P  D         +     +VLD V DPHN+GA LR A A   
Sbjct: 66  GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   L+++   G   +G ++++   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  +AL+LGAEG GLR  TQET  S+  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQ 245

Query: 280 FA 281
             
Sbjct: 246 RI 247


>gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis
           MR-1]
 gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis
           MR-1]
          Length = 246

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL             ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +   HQG+                 L A  +   L++LD V DPHN+GA LR+A A
Sbjct: 62  EKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
          Length = 297

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++ +     +             + + + + LD V D
Sbjct: 94  TRTFAKGGLVLEVTEKVISAITRRDNLQMVAGVFEQQYHQLAGLKPKGNDVYVALDRVRD 153

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A    G+I     +   S    ++  G++  +P  R S       +  
Sbjct: 154 PGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASEADFLNWRKG 213

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +         N  I LI+G E +GL          +A +   G   +L
Sbjct: 214 FSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSL 273

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V LY  + 
Sbjct: 274 NLAIATGVMLYEIRR 288


>gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
 gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
          Length = 268

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 12/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKT 95
           + R   + +   + G   V   L    R + +L   + A                  +  
Sbjct: 16  RRRVQGESQRRRVVGRQPVLELLRAG-RPVNRLFIAEGAEGGSMAEITARAKEAGIVIIR 74

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP   +D+       HQG+  + AP     LD         R   L ++LD + DPHN+G
Sbjct: 75  VPRNRLDEWAS-GVNHQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A + DG++  KR + + +  + K+++GA E +P IR+ NL   +  +   G++
Sbjct: 134 SILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYR 193

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G  ++ +            AL++G EGKGL    +E    + H+ M G + +LN   A
Sbjct: 194 VVGADTEGECDYTDVDYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVA 253

Query: 269 AAVALYITQNHFA 281
           A V LY      +
Sbjct: 254 AGVLLYEAIRQRS 266


>gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b]
          Length = 244

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       V+    Q +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P  +        L     +  L++LD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGKNYQEGDLPDLLESIENPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3]
 gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3]
          Length = 246

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL             ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + A HQG+                 L    +   L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G H V+A L + +  + ++       +   +    A       +       +  IVG 
Sbjct: 6   IFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLSSIVGT 65

Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                 +A       A  L   LDA+    LL+VLD + DPHN+GA LR A       +I
Sbjct: 66  RRHQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 125

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K L + 
Sbjct: 126 APKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEKGLYEA 185

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +   ALI+G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY  +    
Sbjct: 186 DFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQRI 243


>gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4]
 gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4]
          Length = 246

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL             ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               +   HQG+                 L A  +   L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
 gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
          Length = 246

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 246

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
 gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
          Length = 250

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 9/250 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +   Q     + G + V  A  +     K+F L   ++   R        H   ++ V  
Sbjct: 2   KEDKQINENIIEGRNAVLEAFRSGKPIDKLFVLDGCQDGPIRTIVREAKKHDTILQFVTK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILR 152
           + + +I         +A   A   +   D ++          L++LD++ DPHN+GAI+R
Sbjct: 62  ERLSQISETGRHQGVIAYAAAYEYADVEDMLKLAESKGEDPFLILLDNIEDPHNLGAIIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++ +   G   +  
Sbjct: 122 TANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMESLKEKGLWFVCA 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                + +        I LI+G EG+G+    +ET    A + M G I +LN S AA V 
Sbjct: 182 -DMGGEEMYDLNLTGPIGLIIGNEGEGVSRLVKETCDFTARIPMNGDIDSLNASVAAGVL 240

Query: 273 LYITQNHFAK 282
            Y       K
Sbjct: 241 AYEIVRQRRK 250


>gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 253

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  R      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D           +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       +   KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
 gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
          Length = 255

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 13/249 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98
             ++P    + G + V  AL   +R I  +L  + A      D           VK V P
Sbjct: 4   KRTEPAQDVIAGRNAVKEAL-CSARPIESILVARGARNGSLGDIVSKAKAQGVAVKEVDP 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           + ++ +    A HQG+    A     +++ +            L+V D +NDPHN+GAIL
Sbjct: 63  KRLEFLC-PGANHQGIVALAAAHEYASVEDMLALADERGEPPFLIVADELNDPHNLGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR S   +  + K+++GALE++P  R+SNL  A  +        I 
Sbjct: 122 RTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVSNL-AAALEDLKKRGLWIY 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +     P  +       AL++G+EG G+    +E    +  L M G I +LN S AA V
Sbjct: 181 GADMEGTPWCEAELTGPAALVIGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGV 240

Query: 272 ALYITQNHF 280
            +Y      
Sbjct: 241 LMYEFMRQR 249


>gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
 gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
          Length = 268

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 3/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDW 83
            +   K++ +  +KSR   +     + GV  ++ AL+   +    L      +A      
Sbjct: 9   QNPTVKQLVALQEKSRIRRKTGEFLIEGVREINLALDAGFQLTQLLFCSAIADAEELAAL 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            + L        V  +   KI  +      +A   A   + +   +  + L+MV +    
Sbjct: 69  QSKLSAEVTQIEVTEEVYKKIAYRSGTEGIIASAKAKKNTLSALDLPKNPLIMVAEAPEK 128

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGA+LR+A A   D  I     +   +  + +S+ G L  +P    S   + +  + 
Sbjct: 129 PGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVGGLFTVPVATGSTQ-EVIDFLK 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                            E++      AL++G E  GL    +  A     + M G + ++
Sbjct: 188 QKNIAIYTAILQEAISYEKQDFTTASALVVGTEADGLSEAWRAAAKQNIIIPMQGRLDSM 247

Query: 264 NVSNAAAVALYITQNHF 280
           NVS AAA+ ++  +   
Sbjct: 248 NVSVAAAILIFEARRQR 264


>gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
 gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
          Length = 246

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKI 104
           +  +YG+H++ A L+N  ++  ++   K    R               ++    + +D  
Sbjct: 2   SEIIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEATGLVIQVASRKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V   A    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
 gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
          Length = 246

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    RKI ++   +N+ + +  D          P+  +  + + +   +
Sbjct: 4   IEGRNAVYEALRAG-RKIHRIYIKENSSSEIIDDILEMAEKDNIPITRISNKKLSE-TAR 61

Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+  E   L    +       D      L ++LD + DPHN GAI+R+A A   D
Sbjct: 62  SHAHQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGAD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++   R +   + V+ K+A+GA EHIP +++SN+  A++ +    F  +G  +  ++  
Sbjct: 122 AVVYQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   +   AL++G+EG GLR   +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 FEADFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQE 241

Query: 281 AK 282
            K
Sbjct: 242 EK 243


>gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240013]
          Length = 250

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-K 65

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 243

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +F L   ++        A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533]
 gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533]
 gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 253

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 6/251 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ L  T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLYVL-GTAEALKKLDTTY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++      I + +      Q + +        +        +++  D++ DP 
Sbjct: 66  KLKDNKVIQITDA--IAQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWVVL--DNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   L        + 
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN 
Sbjct: 182 LPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALYIT 276
           + AA + +Y  
Sbjct: 242 AVAAGIMIYHF 252


>gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 243

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+     L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
 gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia
           coli AA86]
 gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
          Length = 243

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERTPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
 gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
          Length = 271

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 99/261 (37%), Gaps = 8/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+  +  +  +   +       G H V  AL++       L   ++    +    
Sbjct: 10  QNARVKEWAALRR-GKERRRRGTFLAEGPHLVGEALHSGLGIEVVLFDPRDQTPEVASLV 68

Query: 86  NLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLD 139
                   PV+ V  + ++++          A+   P              +  L++ LD
Sbjct: 69  EEARGKGCPVQPVDRRVLERVCEVITPQGIAAVVRIPERPMPGFAVEAPEEDPVLMVALD 128

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+GA+LR A A    G++  +  +   S    +S+ GA   +P  +   +    
Sbjct: 129 GIQDPGNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSMGAAFTVPIRQGRLVNMIG 188

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +              +  +       N  + ++LG EG+G+ P+ +       H+ MPG 
Sbjct: 189 EWHAKGVEPVETAVGEGVRYDRWN-WNIPVMIVLGNEGRGISPEVRHLCRGKVHIPMPGG 247

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LNV+ AAA+ LY  + H 
Sbjct: 248 GESLNVAVAAALLLYEARRHR 268


>gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7]
 gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7]
          Length = 246

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL             ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A  +   L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 272

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 136/269 (50%), Positives = 180/269 (66%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           KDSHYA+LRR +RD K    +  ++ ++     Q E ++LYG+H V AAL NP R +  L
Sbjct: 3   KDSHYARLRRRYRDTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILRHL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             T NAL RLD + +     P+    P+ ++  VG+EAVHQG+ LET PL S +L  + N
Sbjct: 63  YTTPNALKRLDINESNIA-CPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSELTN 121

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 122 TDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYIT 181

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL  ALQ++H   F + GL S+ K PLE  +   KI+LILGAEGKGLR KT+E   S+
Sbjct: 182 VRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENVYSL 241

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A L +PG IK+LNVSNAAA+ALY    + 
Sbjct: 242 ARLDLPGDIKSLNVSNAAAIALYAVHKYL 270


>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQSGVVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D         + +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
 gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
          Length = 248

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           +YG+H+V +AL+   +KI +         +         L      + V  + +D+   +
Sbjct: 6   IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRLTQLIDDLLDLGIEPEKVDRKKLDRFA-E 64

Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+ +E       +   +++       + L +VLD+V DPHN GA LR+A A    
Sbjct: 65  GNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATGVH 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I TK  +   +  + K ASGA E +P  +++NL+  L+ +   G   +G + ++ +  
Sbjct: 125 GVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQTA 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEGKGLR  T+E    +  L M G +++LN+S A  V LY T    
Sbjct: 185 YQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQR 244


>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 244

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G + +  AL N     KI    A+K    +        +   ++ V    +D++   
Sbjct: 3   IIEGRNPIIEALKNNRSIEKIMVNKASKEGSIKKILAMAKENKVIIQEVDRHKLDEMSES 62

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+   T+      LD               ++LD + DPHN+G+I+R+A A    
Sbjct: 63  HA-HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  KR S   + ++AK+++GA+E++P  +++N+ + ++ +   G              
Sbjct: 122 AVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIA-AVDMDGHTF 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + L++G+EG+G+    ++       + M G + +LN S A  + LY      
Sbjct: 181 YQQNLGGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQR 240

Query: 281 A 281
            
Sbjct: 241 N 241


>gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 248

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 31/278 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  I + K  H  K R +                     +  + G H    A
Sbjct: 1   MNIITSKSNNVIKNAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N +  I Q+   +  L R++   N      V  V  + +  +   +     +      
Sbjct: 40  VENQAE-IRQVFVLEAYLDRVENIQN------VTVVTSEILSLLADSKTPQGIV---AEI 89

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LL   +   +     + L+ V DP N+G ++R+A A   DG++ +K  +   S    +S 
Sbjct: 90  LLEQPVLPYQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  ++       +   S         S++     Q  + D++ L++G EGKG+
Sbjct: 150 QGSHFHLPIWKLDREELFERASQSNLAVLATTLSEASIDYRQLPQIDQLILVMGNEGKGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+    A  + H+ MPG  ++LNV+ AA + ++  +N
Sbjct: 210 SPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLRN 247


>gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
          Length = 289

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  + K+++ K  S +     K  R     +  ++ +   ++    E+ F++G H    A
Sbjct: 1   MKKMGKERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEA 60

Query: 61  LNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L      K+F    ++        +       PVK VP Q ++ +     VHQG+ L   
Sbjct: 61  LQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAIT 119

Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   
Sbjct: 120 PYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGI 179

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + ++ K+++GA+EH+P  R++NL  A+Q++   GF   G         +   K   IAL+
Sbjct: 180 TPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALV 238

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G EGKG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 239 IGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 286


>gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 261

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
              +YG+H VS AL +  R    +   K+ +                 V+ +P   +D+ 
Sbjct: 1   MDVIYGIHPVSEALKSRGRSFQYVAIAKDRMDPRVQRIVEDARESGITVRFLPRDFLDR- 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                +HQG+   T+      LD            ++VLD + DPHN+GA++RSA     
Sbjct: 60  TANTNMHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218
           DG++  +R +   +    K+++GA E++P  R++N+  +++     +   T+GL     +
Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++   N  +AL+LGAEGKGL    ++    +  + M G + +LNVS A  + +Y    
Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239

Query: 279 HF 280
             
Sbjct: 240 QR 241


>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-3-3Ab]
          Length = 354

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 11/256 (4%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFP 92
                   ++PE   +YG  TV AAL + +      +  +   +       +        
Sbjct: 82  LQVNRDPEAEPEQEIIYGRQTVLAALRSQATLNRVWVLPRLRYSPQFWSLLEEAKARGTV 141

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           +  V  Q ++ +    A HQG+A +  P     L+             +L+VLD + DPH
Sbjct: 142 IDEVSLQRLNLLTA-GANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPH 200

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RS  AF   G++  +R +   +A + K A+GAL  +P  R+ NL  AL+ +   
Sbjct: 201 NLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQ 260

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G +S    P+        IAL++G+EG+G+   TQ     +  + + G  ++LN 
Sbjct: 261 GFWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNA 320

Query: 266 SNAAAVALYITQNHFA 281
           S AA +ALY      +
Sbjct: 321 SVAAGIALYEIHRQRS 336


>gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 245

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L +  ++  ++   K    R     +         V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLESDPQRFMEVYVLKGREDRRLTPLFQELESIGITVQLANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L +  +   L+VLD V DPHN+GA LR+A A  
Sbjct: 62  T-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGEATH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 ALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+  L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNTRLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAIS- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
 gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
          Length = 260

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85
           +   K+++  + +++   +   L   G H +  A   N S       A   +     W+ 
Sbjct: 7   NPLVKQIRQLH-RTKGRREQNLLLFEGTHLLETACEVNCSLDCLCYTAQWQSRYPQLWEL 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  ++ V P+ +  +         +A         +   + + ++ ++L+ + DP 
Sbjct: 66  ATQKAQRIELVSPEVLQALATTVNPDGVIATAV--NPKISKPTIADFKIGLILERLQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+AVA   DGI  +      ++  + +S++GA  H+P I   +L+  ++   + 
Sbjct: 124 NLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPLIVSCDLSATIKHYQAS 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q I     +              ++LG EG GL  +    A     + +   I++LNV
Sbjct: 184 GVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNV 243

Query: 266 SNAAAVALYITQNHF 280
           + A A+ LY  Q   
Sbjct: 244 AIACALLLYERQRQI 258


>gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 246

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   L G + V  AL       KI+ L   ++   R            +  V  + +D++
Sbjct: 4   EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++         +     ++LD + DPHN+GAI+R+A   
Sbjct: 64  TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +  +AK+++GAL + P ++++NL++ ++++   G   +       
Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSNTMEELKERGLWFVCA-DMDG 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++     I L++G EG G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
          Length = 288

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 27/290 (9%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSAA 60
             K+ K  S +              K++Q  + +S+        + +   +YG HTV AA
Sbjct: 2   STKNYKFNSQEKPQ---------KNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAA 52

Query: 61  LNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L +  R + ++        +    +  +        +  V  + +D+I  +   HQG+  
Sbjct: 53  LKS-ERYLNRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQIT-RRKHHQGIVA 110

Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +  P     L           +  +L+V D +NDPHN+GAI+R+  A    G++  +R +
Sbjct: 111 QICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRA 170

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              ++ + K A+GALE+ P  R+ NL  AL+++   GF   G  +   +P+        I
Sbjct: 171 VGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAI 230

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L++G+EG+GL    Q+   ++  + M G   +LNVS A  +A+Y     
Sbjct: 231 VLVVGSEGEGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQ 280


>gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 254

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 11/249 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
                E   + G + V  A  +     KI+ L   ++   R        H   +  V  +
Sbjct: 5   REQGTETFVIEGRNAVLEAFRSGRTIDKIYVLDGCQDGPVRTIVREAKKHGSLINFVTKE 64

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            + ++  +   HQG+    A     T+D +         +  L++LD++ DPHN+GAI+R
Sbjct: 65  RLSQLS-ETGKHQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGAIIR 123

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +  
Sbjct: 124 TANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA 183

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                + +        I L++G EG+G+    +E    +A + M G I +LN S AA V 
Sbjct: 184 -DMDGEQMYDLNLTGPIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAAGVL 242

Query: 273 LYITQNHFA 281
            Y       
Sbjct: 243 AYEIVRQRI 251


>gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech703]
          Length = 244

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               VK    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D       R++  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  AEGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 243

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1]
 gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 255

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+   ++    R+     L +   V+    +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +  
Sbjct: 127 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q   
Sbjct: 187 QDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244


>gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
 gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
          Length = 244

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P           L        L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRN 243


>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
 gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
          Length = 261

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 105/255 (41%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  + +++   +   L L G H V  A       +      +          
Sbjct: 6   RNPLIKQIRKLH-RTKGRREQNLLLLEGTHLVETAYQEGCSLMTLCYTEQWRDRYPQLWE 64

Query: 86  NLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           N+         V  + +  I     V+    + TA     T + + + QL +V++ + DP
Sbjct: 65  NVSKRVKRSELVSIEVLSNIT--TTVNPDGVVATALFQPRTEEEITDFQLGLVIERLQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A   D I  +      ++  + ++++G+   +P    S+LT  ++K  +
Sbjct: 123 GNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQVPIFVTSDLTTVIKKSKN 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   I    D+ +   Q        ++LG EG GL       A ++  + +   +++LN
Sbjct: 183 KGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLADNLVSIPLGPGVESLN 242

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+ LY  +  
Sbjct: 243 VAIATALLLYEAKRQ 257


>gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H ++A L    + + ++       +A A+   D        +  V  + +D + G
Sbjct: 6   LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A+  A +    LD V        LL++LD V DPHN+GA LR A A     +
Sbjct: 66  NARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L  
Sbjct: 126 IAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  +A ++GAEG+G+R  T+E    +  + M G +++LNVS ++ + L  ++   
Sbjct: 186 FDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQR 243


>gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 243

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        ++   ++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1]
          Length = 295

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 22/278 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKIFQLLA 73
           ++N    K+     +++      +             LYG H V +AL +  R   ++  
Sbjct: 9   KKNRPPAKRPPRLQRRTPAQPLQKAPPTAPAADAPELLYGRHAVLSALESG-RPCNRIWV 67

Query: 74  TK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                 +       +        + TV P+ +D++  +   HQG+A++ A     +L+  
Sbjct: 68  IPSLRYDPRFHQRLNEAKQQGAIIDTVTPERLDQLC-QRGRHQGIAIQVAAYNYWSLEDL 126

Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                  N  +L+  D + DP N+GA++R+A A    G+I  +R +   +A +AK+A+GA
Sbjct: 127 LAKAATVNQPVLLAADGITDPQNLGAMIRTAEALGMQGVIIPQRRAVGITATVAKAAAGA 186

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           LE++P  R+ NL  AL+ + + G+   GLS     PL +   +     ++G+EG+G+  +
Sbjct: 187 LEYLPVARVINLNQALETLKAAGYWIYGLSEHGAVPLPKITFDRPTVFVVGSEGEGISLQ 246

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           TQ+    +  + + G   +LN S A  +ALY      +
Sbjct: 247 TQKHCDEIVAIPLAGRTNSLNASVAVGIALYEINCQRS 284


>gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
 gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
          Length = 251

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V+A L    + + ++      ++A A+   D        +  V    +D + G
Sbjct: 6   LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A+  A     +LD V        LL++LD V DPHN+GA LR A A     +
Sbjct: 66  NARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L  
Sbjct: 126 IAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++G+EG+G+R  T+E    +  + M G +++LNVS ++ + L  ++   
Sbjct: 186 FDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQR 243


>gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
 gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
          Length = 253

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 15/252 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99
            +QPE  F++G HT++A L +  +KI  L   ++   +      +    H  P+ T+   
Sbjct: 2   RNQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKV 61

Query: 100 TIDKIVGKEAVHQGLALET-----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
             ++I    AVHQG+  +               L   L    N   L+VLD V DPHN+G
Sbjct: 62  QCNEIA-PNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A LRSA A   D +I  +  + +++ ++ K+A+GA E      ++NL   L+++   G  
Sbjct: 121 ACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIW 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GL     + +        +AL+LGAEGKGLR  T+     +  + M G + +LNVS A
Sbjct: 181 CYGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVA 240

Query: 269 AAVALYITQNHF 280
           A V L+      
Sbjct: 241 AGVGLFEVVRQR 252


>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
 gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           Hall]
 gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
          Length = 259

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +K D + + +G EG G+       +     + MPG  
Sbjct: 179 LRKKGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
 gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
          Length = 243

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL +       L++       L             V+  P + ++K    
Sbjct: 4   YIVGRNAVKEALKSGRSIQRILVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  EVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1]
          Length = 255

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 13/249 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            +  ++YG+H V  ALN    +I ++   +    +           +      V  + +D
Sbjct: 2   SDLEWIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRLMQLCKANKVRHSVVARRDLD 61

Query: 103 KIVG---KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILR 152
           ++        VHQG+   TA   +     +         + L+++LD V DPHN+GA LR
Sbjct: 62  QLFTANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     ++  K  S   +A ++K A GA E IP   ++NL   ++K+   G    G 
Sbjct: 122 SADAAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGT 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++ + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V 
Sbjct: 182 AGEATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVC 241

Query: 273 LYITQNHFA 281
           LY      A
Sbjct: 242 LYEVVRQRA 250


>gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519]
 gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii]
          Length = 242

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL +  R I  L      K    +            +K V    +D++  +
Sbjct: 3   ISGRNPVLEALKSN-RTIDCLYIKAGDKEGSIKKILSIAKEQKILIKEVDKTKLDELA-E 60

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+           L+               ++LD + DPHN+GAI+RSA      
Sbjct: 61  GTQHQGVVALVTDYKYYELEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S S +A + K+A+GA  +   +       +  +        I       +  
Sbjct: 121 GVIIPKRRSASVNATVEKTAAGAASY-MKVIKVTNLVSTVEKLKKEGIWIYALDMDGESY 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       +AL++G EGKG+    ++       + M G + +LN S AA++ LY      
Sbjct: 180 DTVDLKGSVALVVGNEGKGISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239


>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 274

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 5/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82
           ++   K +++ N+K +  +Q       G+  V  ALN        + +     N      
Sbjct: 12  SNPIIKDLKALNKKKK-RNQEGLFMAEGLKLVIDALNLGWTIQTLIFSKSTQGNTTIENT 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               L +   V     + ++ I  ++     + +                 + + LD V 
Sbjct: 71  AAHILANGGYVIRASQKIMESITHRDNPQTVVGIFKQQWHPIETITESAKDVYIALDRVR 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I     +    +     ++        +   N    L   
Sbjct: 131 DPGNLGTIIRTADAVGAKGVILI-GETTDPFSPETVRSTMGSIFSIPLYRFNENAFLDWS 189

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            ++    IG                 I L++G E +GL          +A +   G   +
Sbjct: 190 TNFKGMIIGAHLQGAVDYRTIDFKGPIILLMGNEQQGLSNALANRCHQLARIPQNGHADS 249

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A A+ LY  + 
Sbjct: 250 LNLAIATAIMLYEIRR 265


>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 278

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 109/267 (40%), Gaps = 15/267 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  ++++   +     + G    S     P  ++ +   T++ L +   +A
Sbjct: 6   SNSQVKQVSAIAKRAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-----------PTLDAVRNSQ 133
             L      +TV  + +  +   +     LAL                        +   
Sbjct: 63  DRLLAGCRYETVTDEVMKAMADTQTPQGILALCRQFSYELSDILGERKEGDEHTQEKAPA 122

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++L+ + DP N+G ILR+       G+I     +   +  + +S  G++  +P++ + 
Sbjct: 123 QLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYVE 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L  A++++   G +        +K  +Q+        ++G E  GL  +T E A +   
Sbjct: 183 DLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYIK 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN + AA++ +Y T    
Sbjct: 243 IPMLGKVESLNAAVAASILMYETARQR 269


>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 257

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 103/270 (38%), Gaps = 16/270 (5%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
            E+I S+ + H           K  +    + +   +     L G H V  A ++  R I
Sbjct: 2   REQITSVHNQH----------VKDWRKLQTR-KGRKKFGQYLLDGWHLVQEASHSNQRLI 50

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             + + +      D  A   +   V  V P+ I  I         +A+   P ++   + 
Sbjct: 51  ALIGSAEELSQHEDIVARFEN---VYEVTPEIIKHITETNTPQGIVAVVEMPDVNQVTNP 107

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + LL+  D V DP N+G ++R+A A    G++ +KR +   +  + +S  G+  H+ 
Sbjct: 108 KTGAWLLL--DRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFHLQ 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +                       +   K           AL++G EG+G+  +     
Sbjct: 166 LVVADLKRWINDFQDDQHPVYGTQLNPLAKNFRHVQPGKDFALVMGNEGQGMAEELLNQT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  ++ M G  ++LNV+ +A + ++    
Sbjct: 226 TTNLYIPMRGNAESLNVAVSAGILMFQLNQ 255


>gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22]
 gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22]
          Length = 253

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     +K            K +    + L      S + +  +     +VLD++ DP 
Sbjct: 66  RLKDDKVIKITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++   L        + 
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILEAISSFKENG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   + K L   I   ++AL++G E  G      ETA    ++ + G  ++LN 
Sbjct: 182 IPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALYIT 276
           + AA + +Y  
Sbjct: 242 AVAAGIMIYHF 252


>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
          Length = 269

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 109/266 (40%), Gaps = 12/266 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   KK+Q   +K++   + +   + G+   S    +  +K++  L+   A        
Sbjct: 6   SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVY--LSQSFARKEECEKI 63

Query: 86  NLPHPFPVKT------VPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMV 137
            L     ++       V  +    +       QG+             + +   + LLM+
Sbjct: 64  LLEKGISIEETEYVELVDDKIFKNLSD-TVTPQGVLCLVKMENYTLSEILSGEENPLLMI 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+G ILR+       G+I ++      +  + +S  G++  +P I ++++ +
Sbjct: 123 LEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEE 182

Query: 198 ALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +  +    G  T       +   ++E      A ++G EG GL  +  E+A ++  + M
Sbjct: 183 EVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGLTEQLTESADTLIKIPM 242

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +++LN + A+ + +Y       K
Sbjct: 243 QGKVESLNAAMASGILMYEAYRQRRK 268


>gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
 gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
          Length = 246

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   L G + V  AL       KI+ L   ++   R            +  V  + +D++
Sbjct: 4   EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++         +     ++LD + DPHN+GAI+R+A   
Sbjct: 64  TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +  +AK+++GAL + P ++++NL+  ++++   G   +       
Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSKTMEELKERGLWFVCA-DMDG 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++     I L++G EG G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
 gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
          Length = 255

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTGLAVQVASRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+         P  + +       ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIIARVREGRKPQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G S ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEGKG+R  T+E    +  + M G++ +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
 gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 8/243 (3%)

Query: 48  NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    +  ++++ L   ++                V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDRDASRFKEVYILKGREDRRLMPIIHEIESLGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  TEGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P  R++NL   L+ +  +    +G + ++   
Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQ 241

Query: 280 FAK 282
            A+
Sbjct: 242 RAE 244


>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 269

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 112/264 (42%), Gaps = 8/264 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF--QLLATKNALARLDW 83
           ++   KK+Q   +K++   + +   + G+   S    +  +K++  Q  A K    R+  
Sbjct: 6   SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVYLSQSFAEKEECGRILQ 65

Query: 84  D--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLD 139
           +   ++     V+ V  +    +       QG+             + +   + LLM+L+
Sbjct: 66  EKGISIEETAYVEIVDDKIFKNLSD-TVTPQGVLCLVKMENFTLSEILSGEENPLLMILE 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+       G+I ++      +  + +S  G++  +P I ++++ D +
Sbjct: 125 DLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEDEV 184

Query: 200 QKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             +    G  T     + +   ++E      A ++G EG GL     E A ++  + M G
Sbjct: 185 LPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGLSEHLTERADTLIKIPMQG 244

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +++LN + A+ + +Y       K
Sbjct: 245 KVESLNAAMASGILMYEAYRQRRK 268


>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 302

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 5/245 (2%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR-LDWDANLPHPFPVKTV 96
             +     +  + G + V   L+   P+  +F  + TKN        +       P+  V
Sbjct: 47  RHYKPNMSDELVVGRNPVIECLHAKVPAVAMFVAIGTKNDQRLVEAVNIAASRSIPIVEV 106

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             Q +D++ G   +HQG+ L+        L D + +  +++ LD++ DP N+GA++RS  
Sbjct: 107 SKQKLDEMTG-NGLHQGIGLQIPEYHYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVA 165

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  DG++  +R S S +AV  +S++G    +P  +++N+T AL++    G+Q IGL + 
Sbjct: 166 AFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAG 225

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +   +       + +++G+EGKGL    +ET  ++  + M G +++LN S AA V L  
Sbjct: 226 GEHTHDSYDGTGPVVIVVGSEGKGLSRLVKETCDTIVTIPMEGWVESLNASVAAGVVLAE 285

Query: 276 TQNHF 280
                
Sbjct: 286 FARQR 290


>gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170]
 gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170]
          Length = 268

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K       +SR   +     L G   ++ A+      I  +   K  ++  + D 
Sbjct: 11  QNPLIKNAVQLRDRSRERKKTGLFILEGKRELTLAIKANY-IIQTVFICKEIISDQEIDL 69

Query: 86  NLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L +    F +  V      K+  +E+    LA+      S     +R + L++V +   
Sbjct: 70  VLSNIHDGFELIEVTKIVYHKMAYRESTEGILAIVKGKNHSLENIRLRKNALILVAEAPE 129

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGA+LR+A A + D ++                +S        I + + +  +  +
Sbjct: 130 KPGNIGALLRTADAANLDAVLI-ANPKGDLYNPNIVRSSVGCVFTNQIGLGSTSQIIDFL 188

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     +  + +P  Q       A+++G E  GL  +    +T+   + M G I +
Sbjct: 189 KKKQINLFCAALSASQPYTQVNFEKAAAIVVGTESTGLSQEWLNASTNNIIIPMEGEIDS 248

Query: 263 LNVSNAAAVALYITQNHFA 281
           +NVS +AA+ ++  +   +
Sbjct: 249 MNVSVSAAILIFEAKRQRS 267


>gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  +YG+H V A L+   ++  ++   K     RL             V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDIGITVQLANRQWLDTQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D            L+VLD V DPHN+GA LR+A A   
Sbjct: 62  TESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++   
Sbjct: 122 DAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEATHS 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIMRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126]
 gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126]
          Length = 245

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I S +                      + +H        L G H    A
Sbjct: 1   MEIIQSKQNASIKSARKL-------------------LQRKHRKTS--YLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R+       +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGADILQVFVLEEMANRV------ANMAKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QSQALPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R   L                  SD     +    +   AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPILDMVEACKKQGVPVLATTLSDISVDYKAVKTDGNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 210 SQDMAESADQLVHISMPGQAESLNVAVAAGILMF 243


>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
 gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 28/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I    + ++ + K  H                     +   +     + GVH +  A
Sbjct: 1   MDPIESTSNPRVKTWKKLH-------------------SRKGREKTGLFLVEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         ++     + +           P   V  + + +I   E            
Sbjct: 42  LKAFIHMKELVI----DVDKEIPVEWKVSNVPQVFVTNKVMKEICETETPQG---FVAIC 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +        + LD + DP N+GAI+R+A A   +G++  +      +  + ++ 
Sbjct: 95  ELPDNKNVPLERGKFLFLDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRAT 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P  R+        ++       +  +S            D  ALI+G EG G+
Sbjct: 155 QGSIFHLPVQRMDL--KEAVQICKEKNIPVFGTSLQGSTYNAIQPQDNFALIVGNEGSGV 212

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNVS A  + LY  +
Sbjct: 213 EDTLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249


>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 259

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKREKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKL 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +K D I + +G EG G+       +     + MPG  
Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMK-DNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae]
          Length = 255

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H V A L +  +++ Q+   ++    R+     L     +     +  +  V  E 
Sbjct: 7   IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMDVWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    + L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L  
Sbjct: 127 IVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQELYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
 gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
          Length = 268

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 99/260 (38%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K +     KSR+  +     + G+     AL     K+ ++       +  ++ +
Sbjct: 9   QNKRIKHLLQLQDKSRNRRKESQFVVEGLRETGLALQ-GGFKLLEVYFCPEFFSENEFKS 67

Query: 86  N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHV 141
                     +  +  +   K+  + +    + +  +   +   L+   N+ L++V +  
Sbjct: 68  IPDFEHADAEIIEISSEVYQKLAYRTSTEGVITVFASKENALQKLNFSHNNPLILVAEAP 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D ++                +S        I I   ++ ++ 
Sbjct: 128 EKPGNIGALLRTADAANVDAVLI-ANPKTDLYNPNIIRSSVGCVFTNKIAIGTTSEIIKF 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +          +  + +   +       A+++G E  GL  + +E AT    + M G I 
Sbjct: 187 LQHKNIAIYAAALQASEIYTKIDFTKASAIVVGTEATGLNQEWREAATQNIIIPMNGAID 246

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS AA + ++  +   +
Sbjct: 247 SMNVSVAAGILIFEAKRQRS 266


>gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
 gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
          Length = 263

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 13/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTI 101
              LYG+H V  A+ +  R++  +L +++   + D       +        V   P   +
Sbjct: 1   MEVLYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLAGVRVSIEPKDQL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++ G +A HQG            ++         + +  + LD V DPHN+GA+LRSA 
Sbjct: 61  TRVAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFDKRFFLALDGVEDPHNLGALLRSAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               DG++   R S   S V+AK+++GA EH+   R++NL  +L++M       +GL   
Sbjct: 120 GAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLDER 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     N    L+LG+EG GL   T++T   +  + M G + +LNVS A AV +Y 
Sbjct: 180 GTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 239

Query: 276 TQNHFAK 282
                ++
Sbjct: 240 ALRQRSQ 246


>gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
 gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
          Length = 246

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVVQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            A
Sbjct: 242 RA 243


>gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23
           rrna gm2251 2'-o-methyltransferase) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus
           asymbiotica]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  +YG+H V A L+   ++  ++   K     RL+   +        V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDRDPQRFMEVYVLKGREDRRLNPLIHELENIGVTVQLANRQWLDNQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  TEGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E +P +R++NL   L+ +       +G + ++   
Sbjct: 122 HVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
          Length = 270

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 104/260 (40%), Gaps = 10/260 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ S   K++   +     + G+             +  L  T+N       + 
Sbjct: 6   SNKQVKRVVSLRSKAKARREEGMYVVEGLRMCREL---NPEDVDALYVTENFAGD-ADNR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDH 140
                F  +TV    ++ +   +   QG+            D V+ +       +MVL+ 
Sbjct: 62  KWMGRFRPETVSDVVMNVMADTQ-TPQGVLAVVRQKRYTMDDIVKPAPDGRSLAIMVLET 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+       GI+     +   +  + +S  G++  +P++   +L DA  
Sbjct: 121 IQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPKVIRSTMGSIFRMPFVYADDLQDACL 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            M + G +            +QE   D +  ++G E  GL  +T   A  +  + M G +
Sbjct: 181 LMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADCLVKIPMEGKV 240

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + AA+V ++ T    
Sbjct: 241 ESLNAAIAASVLMFETARQR 260


>gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
 gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
          Length = 278

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 10/271 (3%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPS-RKIFQLLAT 74
           +Y K  RN  + K  +    +       E L   F++G H V  AL      K+F L   
Sbjct: 4   NYKKESRNVGNKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDA 63

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130
           +        + +     PVK VP Q +++   ++ VHQG+ L   P    +LD       
Sbjct: 64  RGERIDEVKELSKEQSVPVKWVPKQKLEQYS-QQGVHQGMVLAITPYEYLSLDELLAKSP 122

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                ++LD++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EH+P  
Sbjct: 123 EKPFFIILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIA 182

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R++NL+ A+Q +   GF T G + +             IALI+G EG+G+    +++   
Sbjct: 183 RVTNLSQAVQTLKERGFWTFGTAMEGTNYRSWNT-QGAIALIIGNEGRGMSEGLKKSVDE 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + M G +++LN S AA + +Y      +
Sbjct: 242 LLTIPMVGHVQSLNASVAAGLLMYEAFMQRS 272


>gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
          Length = 306

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G   V   L +    R ++     + A              PV  + P  + + V  E
Sbjct: 44  VEGRQPVLELLRSGHPVRHVWVAAGRRGAALAELEALARRRGVPVTEIDPAELQRRVQTE 103

Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +AL         LD        R   LL++   + DPHN+GA+ RSA A    G 
Sbjct: 104 GHQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDPHNLGAVFRSAEAAGAHGA 163

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +     S        KS++GAL H+   +++NL   +++    G   +    +  +P +Q
Sbjct: 164 VVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKEQGVWVVAADPEGAQPYDQ 223

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  AL+LG+EG+G+ P           + M G + +LNVS AA + L+      
Sbjct: 224 WDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQR 281


>gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
          Length = 250

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 9/241 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+H   AAL+    KI +     + +                 +     + +D++   
Sbjct: 7   VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 L     P          TLDA     L +VLDHV DPHN+GA LR+  A    G
Sbjct: 67  RKHQGILLELDLPGEQGEAELLDTLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGVKG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ TK  S   +  +AK ASGA E +P  R++NL   L +    G+  +G + ++++ L 
Sbjct: 127 LVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERTLY 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      + +++GAEG GLR  T+E    +  + M G +++LN+S A  + LY      +
Sbjct: 187 ELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQRS 246

Query: 282 K 282
           +
Sbjct: 247 R 247


>gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 106/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +    I  ++      QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-SEISHLISDTMTEQGVFAVVAI 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  +  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  D  K L    K + +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFEWVGNLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
 gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
 gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 106/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +    I  ++      QG+    A 
Sbjct: 42  LRQDG-LVLELLISSGVSVPEEW---LKGDYDVFEIS-SEISHLISDTMTEQGVFAVVAI 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  +  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  D  K L    K + +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFEWVANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 242

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
 gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
          Length = 237

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 6/234 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
             +YGV  V   L +  R + ++L   +   R            V+ VP   + ++ G  
Sbjct: 3   EVVYGVRPVIEVLRSRRRAVHEVL--DSTGNREVERLAADAGVGVRRVPRGRVARLAG-G 59

Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             HQG+A    P     L+ V    + L+ VLD V DP N+GA+LR+A   +  G++  K
Sbjct: 60  GAHQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVPK 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   +    K+++GA EH+   R++NL  A+ +M   G   +  +    +   +   +
Sbjct: 120 DRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLW-VYAAEPGGENYAEADLS 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +AL+LG+EG+G+R   +E    +  + M G + +LNVS AAA+ LY  +   
Sbjct: 179 GPVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQR 232


>gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum
           SL003B-26A1]
 gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum
           SL003B-26A1]
          Length = 265

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 106/253 (41%), Positives = 154/253 (60%), Gaps = 2/253 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R          +         + LYG+HTV AA  NP R+  +L AT+NAL RL+     
Sbjct: 12  RRAGGFVKPAPRRPGLPPEGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIR 71

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   PV+ + P+ +D++V ++AVHQG+ LE   L +  +D ++ ++L++ LD V DPHN+
Sbjct: 72  P-DVPVEILAPRALDRMVTRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNV 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSAVA + D ++TT+R++P E  VLAK+ASGAL+ I ++R+ N+   L +M   GF
Sbjct: 131 GAILRSAVALAADAVVTTERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGF 190

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             + L SD +  LEQ    DK  L+LG+EGKG+R   +     +A L MPG I++LNVSN
Sbjct: 191 FRVALDSDGEASLEQTPFGDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSN 250

Query: 268 AAAVALYITQNHF 280
           AA +ALY      
Sbjct: 251 AAVLALY-VARQR 262


>gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
 gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
          Length = 254

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 9/250 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96
           R   +     +YGV+ V AAL     KI      K           +     +   V+T 
Sbjct: 3   RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMNNYGIKVQTA 62

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151
              T+D+I         +    A       D         +   +VLD V DP N+GA +
Sbjct: 63  MRHTLDEITDNGVHQGVVIEMVATPPKNEGDLEELLDTLENPFFLVLDGVTDPRNLGAAM 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A    G+I  K  S S S    K+ASGA + +P   ++NL   L+ +     + IG
Sbjct: 123 RSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVRVIG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +  ++   +        +A+++G+E  G+R  T+E    +  + M   +++LNVS AA +
Sbjct: 183 MDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAGI 242

Query: 272 ALYITQNHFA 281
           AL+      +
Sbjct: 243 ALFEAVRQRS 252


>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 261

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  + +++   +   L L G H V  A       +      +          
Sbjct: 6   RNPLIKQIRKLH-RTKGRREEGLLLLEGTHLVETAYEANCSLMTLCYTEQWRTRYPQLWE 64

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           N+      ++ V  + +  +     ++    + TA     T   + + +L +V++ + DP
Sbjct: 65  NVSKKVQRLELVSLEVLTAMT--TTINPDGVVATALFEPFTEGEITDFRLGLVIERLQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A   DGI  +      +   + ++++GA   +P    S+L   ++K  +
Sbjct: 123 GNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVPIFISSDLKRIVEKYKN 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF  +    ++ +            ++LG EG GL       A  +  + +   I++LN
Sbjct: 183 NGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLANEIVSIPLSEGIESLN 242

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+ LY     
Sbjct: 243 VAIATALILYEAXRQ 257


>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 261

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 97/263 (36%), Gaps = 9/263 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              ++  K++ +  +KS    +     + G+           +K   L    +       
Sbjct: 4   SSGNKKIKELMALIKKSSARKKQNAYIIEGIRMFREL-----KKDEILDVFVSESFDALN 58

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLD 139
              +   +P   V    I + V      QG+ +          +           L++LD
Sbjct: 59  KKLISEIYPGYEVVSDKIFESVSDTKTPQGVMVVVKRKEYTLENILTVRGEFPHNLLILD 118

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ++R+       GII  +      +  + +S  G++  +P+I + +L D +
Sbjct: 119 SLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFIYVKDLKDII 178

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +++++        S +     +       IA I+G E  G+     +   +   + M G 
Sbjct: 179 EELYARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKNKVKIPMLGE 238

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           +++LN + A ++ +Y       K
Sbjct: 239 VESLNAAVAGSILMYEAARQRRK 261


>gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
 gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
          Length = 253

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL      K++     +        +        +     +++ +I  
Sbjct: 15  NDIVYGVHAVTEALRANTGNKLYLQEDLRGKNLEKVKELATEKKVSISWTSKKSLSEIT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 134 GVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  R      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D           +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAREFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       +   KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 264

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 10/273 (3%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +S KI  ++        ++++  K + S  Q+ ++  +     + G+  V+         
Sbjct: 2   ESPKIDYIQ-------SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDIGK--KDC 51

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  +L  ++  + L+             V   +I   +      QG+       ++    
Sbjct: 52  LRSILIRESKRSELEPLVQKGFTVSSVYVVQDSIFDKIEHSVNGQGILGIAKKCVNDLHS 111

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL +I
Sbjct: 112 FIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNI 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P      L++    +     +T   S ++ KP        +  +ILG EG G+  +  E 
Sbjct: 172 PIFEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEM 231

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G I++LNVS AAA+ +Y  +   
Sbjct: 232 CDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264


>gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
 gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++    
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETH 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A     T+D +         +  L++LD+V DPHN+GAI+R+A      G
Sbjct: 65  A-HQGVIAQVAAYDYSTVDEILARAEEKGEAPFLIILDNVEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+ + P  +++N+   ++++   G   +       + + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRTIEELKEKGIWFVCA-DMGGETMY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241


>gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
 gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
          Length = 279

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 120/278 (43%), Gaps = 11/278 (3%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIF 69
           K    K S      +     K  Q   +K+  T++ +N  ++G H V  A+      K+F
Sbjct: 2   KNKQSKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNF-VFGYHAVVEAIQQGRGNKLF 60

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
               +K                PVK VP   ++     + VHQG+ L        +L+  
Sbjct: 61  LQEDSKGEKIDKLKQLAQERSLPVKWVPKTKLEMWS-NQGVHQGMVLAITAYEYLSLNEL 119

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                    +   ++LD + DPHN G+I R+A A   DGII  K  S   + V+ K+++G
Sbjct: 120 LEQVKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTG 179

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A+E+IP  R++NL+  + K+    F   G           +     +ALI+G EGKG+  
Sbjct: 180 AVEYIPVARVTNLSQIIAKLKEQQFWIFGTDMTGIDYRNWD-ATGALALIIGNEGKGISA 238

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++ A  +  + M G +++LN   AA + +Y      
Sbjct: 239 GLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYRKR 276


>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
 gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
          Length = 275

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 103/266 (38%), Gaps = 14/266 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLD 82
           +++  K++    +KS+  S+       G+  V      P  ++  L      +    +  
Sbjct: 11  SNQRVKELSQIQKKSKIRSREGIFIAEGIRMVRE---TPHERLVGLYFSESFEKKYGKEV 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIV-------GKEAVHQGLALETAPLLSPTLDAVR-NSQL 134
            D        V+    +  + +              QG+      +              
Sbjct: 68  LDVISGGDLKVREQIRKKTEILSDAVFSYVSDTKTPQGVLAVVHQMEYTLGQMTEGAIPH 127

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           LM+LD++ DP N+G I R+A A    GII ++      +    +S  GAL  +P++ + +
Sbjct: 128 LMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFVYVED 187

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + +  +     ++     D K   ++E      A ++G EG GLR +  + A +   +
Sbjct: 188 LRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQCADTWIRI 247

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M G +++LN + AA V ++      
Sbjct: 248 PMCGQVESLNAAVAATVLMFEVSRQR 273


>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 256

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 24/273 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I+  ++ ++                         Q  +   +     + G H V  A+
Sbjct: 4   ERITSNQNNRVKEWTK-------------------MQSKKGRVKSGEYVIEGWHIVDEAI 44

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            +       ++  ++ L  L  D        +  + P+    I   E   QG+       
Sbjct: 45  RHRQTIKQLMVVDESYLGDLPVD----DDTEIFLITPEIAKHISSTE-TPQGVFAVLNTE 99

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                         ++LD++ DP NIG ++R+A A   +GI+  K  +   +  + +S  
Sbjct: 100 DYHEQIPDDLKGAWLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQ 159

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G+  H+       L        +         +D            + ALI+G EG G+ 
Sbjct: 160 GSQFHMKLFTGDILEWMAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVD 219

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           PK  E      ++ M G  ++LNV+ A  + L+
Sbjct: 220 PKILEKTDQNLYIPMNGEAESLNVAVATGILLF 252


>gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 253

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 6/251 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ L  T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLYVL-GTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++     +      K +    + L      S + +  +     +VLD++ DP 
Sbjct: 66  KLKDDKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   L        + 
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNPILEAISSFKENG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN 
Sbjct: 182 LPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALYIT 276
           + AA + +Y  
Sbjct: 242 AVAAGIMIYHF 252


>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
 gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
          Length = 384

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 29/291 (9%)

Query: 17  DSHYAKLRRNHRDYK--KMQSFNQKSRHTS--------------QPENLFLYGVHTVSAA 60
            S +    R+   Y   + +   QK                   Q     LYG H V AA
Sbjct: 76  KSRFKDKDRDKPRYGDDRPRRSGQKPPFGKTFPAAPPPMDSEQAQEALDLLYGHHAVLAA 135

Query: 61  LNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L+   R++ ++        +   R        +   V  V    +++I    A HQG+A 
Sbjct: 136 LD-GDRQLNRIWITSHLRHDIRYRTKIQTAKANGTVVDEVDNFRLNQIT-HNANHQGIAA 193

Query: 117 ETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + AP     L        +   + +L+++D + DPHN+GAI+R+A AF   G++  +R  
Sbjct: 194 QVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRV 253

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              ++ + K A+GALEH P  R+ NL+ AL+ +   GF   G  +  +  L Q    + +
Sbjct: 254 AGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIYGTVAGKQTALHQADLREPM 313

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            L++G+EG+GL   TQ+    +  + + G   +LN S AAA++LY      
Sbjct: 314 GLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQR 364


>gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 242

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V  AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++N++  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
 gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
          Length = 257

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 4   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 44

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I +L+ +       DW         +  VP   +  +   E      A+    
Sbjct: 45  LKAG--VITELIVSDQTDLPKDWTV---TDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 100 EKEIALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +              ++  P  +       ALI+G EG G+
Sbjct: 156 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 215 RQEVLAKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 251


>gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 12/266 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARL 81
           + +++  +    N  +    +     + G + V   L +  R I  +           ++
Sbjct: 32  KENKNGGEYIRENVSNASELETREDLIIGRNAVMEVLKSD-RTIECVYISNGNMEGSIKV 90

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQL 134
             +        +K V  + +D +      HQG+     P     +  +            
Sbjct: 91  IINIAREKGLVLKEVDRKKLDAMS-NGTNHQGVIALVTPFKYCQIADMLNDAKEKGEDPF 149

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DPHN+G+I+R+A      GII  KR +   ++ + K + GA+EH+   +++N
Sbjct: 150 IIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKIAKVTN 209

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +  A+ ++   G    G     ++   Q   N   A+++G+EG+G+   T +    +  +
Sbjct: 210 INSAIDELKESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKLTLKKCDKLVKI 269

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M G I +LN S A  + +Y      
Sbjct: 270 PMVGKINSLNASVAGGIMMYEILKGR 295


>gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxidans DMS010]
 gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxydans DMS010]
          Length = 246

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V AAL+ P  +I ++      ++        A       V      T+DKI  
Sbjct: 5   VIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKIA- 63

Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG A    PL S          +++    LL++LD V DPHN+GA LR+A A   
Sbjct: 64  PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A   K +SGA E +P+ +++NL+  ++++   G   +G S DS+  
Sbjct: 124 HAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSELS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +A++LGAEGKG+R  T++    + ++ M G  ++LNVS AA V LY     
Sbjct: 184 LFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 122/259 (47%), Gaps = 12/259 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLP 88
           M+  + +S+   +    ++YGV+ V  AL     ++ +L   +  L              
Sbjct: 1   MRDRSSQSQEPRERGERYVYGVNPVLEALRARPDEVERLFIVEGQLGSKAAAEILSRARD 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHV 141
                + V  + +  +  +  VHQG+A E        +        A   + L++VLD +
Sbjct: 61  SGIRTERVARERLTTLA-EGGVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGI 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAI+RSA A    GI+  K  +   + V+AK+++GA+EH P  R+ N++ AL++
Sbjct: 120 QDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEE 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G       + SK+PL     +  +AL++GAEG G+R    +       + M G + 
Sbjct: 180 LKEAGLWVAAADTHSKEPLWGARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVG 239

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN S +AAV LY      
Sbjct: 240 SLNASVSAAVLLYEVARQR 258


>gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +F L   ++        A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A+     L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRI 243


>gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           pseudintermedius ED99]
          Length = 249

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ++  + G H V  A+ +     KI      K                 V+TVP   +D++
Sbjct: 2   DSEIIVGRHAVREAVISGHTINKILIQEGIKKQQIEEILKVAKSSKLVVQTVPKSKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP     L+     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR S S +  +AK+++GA++H+P IR++NL+  +  +   G+   G  + + 
Sbjct: 120 GVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               Q   +  +A+++G+EG+G+  + +E       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
 gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      + +LL +K      +W   L   + V  +  + I  ++ +    QG+      
Sbjct: 42  IRQDGLVV-ELLVSKGVSVPEEW---LKGNYDVFEISTE-ISHLISETMTEQGVFAVVTT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D +I  +  +   +  + +S 
Sbjct: 97  TE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ +                  +  +  K L    K D +ALI+G EG G+
Sbjct: 155 QGSHFHIPVIQANLFDWVANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + Q   +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++K+   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L      I Q+   +N LA+L              V  V    +  +   E+    +A  
Sbjct: 40  LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSESPQGLIAEV 98

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                     A +     ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 99  AKIEEVIDFSASK----FLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+   R++          +         S +    +        AL++G EG
Sbjct: 155 RSMQGSNFHLAIARMNEEECFAALKQAKISILTTTLSANSVSYKTVE-ESSFALVMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILIF 250


>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           uraniireducens Rf4]
          Length = 242

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 8/242 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           ++  +YG+++V  AL    R+ F+L        R              PV+    + I +
Sbjct: 2   KDEIIYGLNSVMEALR-GKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIAR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + G E  HQG+AL   P     L          LL+VLD V DPHN+GA++RSA      
Sbjct: 61  LCGTE-HHQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQ 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +  +   +A + K+++GA+E IP   ++N+   L+++ + GF   G   +S   +
Sbjct: 120 GVIIPRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSI 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +     + L++G+EG+G+RP  ++    +  + + G + +LN S A  + L+      
Sbjct: 180 FDQKLTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQR 239

Query: 281 AK 282
           +K
Sbjct: 240 SK 241


>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 271

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 6/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALA 79
              +   K+++   ++ +   +    FL G+  V+ A          ++       +   
Sbjct: 4   SPANEQVKRIRRLQER-KERERTGLFFLEGIRIVAEAAERGEAFETLIVSPDRLQSDFAW 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +L  +    +  P+  V     +++  KE      A+     +     +V N +  + LD
Sbjct: 63  KLVENLRR-NGTPILEVSSLVFERLSQKEGPQGIAAVVHQRWMPLGAVSVENGKPWVALD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G ILR+  A    G+I   + +        +++ GAL  +  +R S      
Sbjct: 122 SVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALFDLHLVRTSFEQFRD 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                 G   IG S  +K+         ++ L++G+E  GL+P   E    +  + M G 
Sbjct: 182 WIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERLGLQPYHLELCDEVVRIPMVGR 241

Query: 260 IKALNVSNAAAVALYITQNH 279
             +LN++ A AV LY   N 
Sbjct: 242 SDSLNLAVATAVVLYEIFNQ 261


>gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +  + I  ++ +    QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  K  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ +                  +  D  K L    K D +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
          Length = 243

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
 gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
          Length = 260

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 4/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85
           +   K+++  + +++   +   L   G H +  A   N S       A   +     W+ 
Sbjct: 7   NPLVKQIRQLH-RTKGRREQNLLLFEGTHLLETACEVNCSLDCLCYTAQWQSRYPQLWEL 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  ++ V P+ +  +         +A         +   + + ++ ++L+ + DP 
Sbjct: 66  ATQKAQRIELVSPEVLQALATTVNPDGVIATAV--NPKISKPTIADFKIGLILERLQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+AVA   DGI  +      ++  + +S++GA  H+P I   +L+  ++   + 
Sbjct: 124 NLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPLIVSCDLSATIKHYQAS 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q I     +              ++LG EG GL  +    A     + +   I++LNV
Sbjct: 184 GVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNV 243

Query: 266 SNAAAVALYITQNH 279
           + A A+ LY  Q  
Sbjct: 244 AIACALLLYERQRQ 257


>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 262

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 22/280 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  +++++                  K +     +++         L GVH + A 
Sbjct: 1   MKLITSAQNDRL------------------KYLSKLLSQAKARRASGQTVLEGVHLLQAY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      +   +       R           P + V       +    ++ +   + T  
Sbjct: 43  LQAGLTPVQVYIPESKLQQREILALIAA--LPEQAVTSVANAALSRITSLSEADDIMTLI 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +    DA   +   +VLD + DP N+G ++RSA A     ++     +   S  + ++A
Sbjct: 101 NIP-AQDAWPVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPKVLRAA 159

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA   +       L   +       + T  L   +   L     +   A I G EG G+
Sbjct: 160 MGAHFLLKIHTEVRLAQWISSYRDKVWATA-LHHQNNHNLYNLDLHQSAAWIFGNEGSGV 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  +    + M G  ++LNV+ AA V L+      
Sbjct: 219 DDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQR 258


>gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629]
          Length = 255

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105
           ++ G + V  A  +     K+F L   ++   +        H   +  V  + +D++   
Sbjct: 13  YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQMSET 72

Query: 106 ----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               G  AV           +    +       +++LD + DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +         + 
Sbjct: 133 IIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCA-DMGGTTMY 191

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  I L++G EG G+    +E     A + M G I +LN S A  V  Y       
Sbjct: 192 DLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQRL 251

Query: 282 K 282
           K
Sbjct: 252 K 252


>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
 gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
          Length = 261

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 3/257 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +   +   K ++S    S    +    F+ G   +  A+      +F +  + +      
Sbjct: 3   ISDGNPRIKLVRSLA-SSHGRKKSGLYFIEGAKLIEEAIKANEDILFIVY-SSDFGDSTL 60

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +       +V P     I         LA+            +    LL+VLD V 
Sbjct: 61  LKLIIDRDIDNFSVLPDVFVNIADTATPQGVLAVLKQQQRDWHEIMMLEHCLLLVLDAVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A A     +I  +  +   +  + ++A G+  H+P      L +AL ++
Sbjct: 121 DPGNVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSFHMPVYNDVPLPEALTEL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +         +++    D+ A+I+G E +G+  K  + A     + MPG  ++
Sbjct: 181 MERVSV-LAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAAYTVSIGMPGRAES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LN S AA + +Y     
Sbjct: 240 LNASIAAGIIMYEISRR 256


>gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 263

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFYDDRFKE 62

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V       +   +     LA+   P          +   L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYITQNHF 280
            + +A + +Y      
Sbjct: 243 AAISATLLMYECNRQR 258


>gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
 gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8801]
 gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
          Length = 292

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 16/275 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--- 72
           +     +   +           + S    +  N  +YG H+V AAL +  +     +   
Sbjct: 17  QKPMVKRRLPSSPLI-----VAKPSPQEEEEANDLIYGRHSVLAALESDRQLNRIWITNK 71

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128
              +A       A       +  V  Q ++++      HQG+A + AP     L+     
Sbjct: 72  LHYDARFHTLIQAAKAKGSVIDEVSIQRLNQLT-HGGNHQGVAAQVAPYAYHELETLIEQ 130

Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                N  ++++ D + DP N+GAI+R+A A    G++  +R +   ++ + K A+GALE
Sbjct: 131 AKASSNEPVIVIADGIADPQNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGALE 190

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             P  R+ NL+ AL+ +   GF   G ++   K L        I L++G+E  GL   T+
Sbjct: 191 SFPVARVVNLSRALETLKEAGFWIYGTAATGGKSLHNMELRGPIGLVIGSEESGLSLLTE 250

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  + + G   +LN S AAA+ LY      
Sbjct: 251 RCCDQLISIPLTGKTPSLNASVAAAIVLYEVYRQR 285


>gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S]
          Length = 252

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +  + I  ++ +    QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKDDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  K  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ +                  +  D  K L    K D +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
 gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
          Length = 260

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V A L+     +  L+       R   
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLV--SERHVRHPE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A +       TV     +       V  G+ L      +            ++LD + D
Sbjct: 64  VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++ 
Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFQSVHSRLR 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +K+ +     +  +  + G EG G+  +     T+   +  PG +++L
Sbjct: 184 VPL---LATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ L+      
Sbjct: 241 NVAAAAAICLFEAVRQR 257


>gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. G5101]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +  L     L      ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESLGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++    
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETR 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A     T+D +            L++LD+V DPHN+GAI+R+A      G
Sbjct: 65  A-HQGVIAQAAAYEYSTVDEILARAEEKGEPPFLILLDNVEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+ + P  +++N+   ++++   G   +       + + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRMIEELKEKGIWFVCA-DMGGEIMY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241


>gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri
           A1501]
 gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L +  +++ Q+   +       ++  +        V     + +D  V  
Sbjct: 7   IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +     I L++GAEG+G+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YAQDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GR 246


>gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V + L+N S +I  +      K+   +L  D        ++    + +D  
Sbjct: 2   SELVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLDIQ 61

Query: 105 VGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                    +                 L   + + LL++LD V DPHN+GA LRSA A  
Sbjct: 62  TQGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +  + K ASG++++IP+++++NL   LQ +  +    IG    S++
Sbjct: 122 AHIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQR 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A ++G+EG G+R  TQ+    +  + M G+  +LNVS A  + L+    
Sbjct: 182 LIFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEALR 241

Query: 279 HFAK 282
              K
Sbjct: 242 QRWK 245


>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 270

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 116/284 (40%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  +K  +                     ++  +  +  + G+  V  A+
Sbjct: 7   EFISSRENECIKRVKKLNDK-------------------KYREEFRSFIIEGLKLVKEAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
           N     I  ++ ++ A  R          L     +K V   P  + + +   +  QG+ 
Sbjct: 48  NYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V D + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDK-DINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + K  +++G 
Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + A     + M G  ++LN + AA++ LY  +  
Sbjct: 227 ESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +F L   ++        A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  +    ++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 262

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K + +  ++ +   +     + G   V  AL    + +  LL  +   A    
Sbjct: 5   SPKNPRVKALAALKER-KERERVGLFLVEGRREVERALQAGLKPVTVLLGPRATPAEE-- 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     V  +  + + ++  +E   Q +A+   P  +     +    L++VL  +  
Sbjct: 62  --ALAQG-EVLRLSEEALKRVSSRENPAQVIAVFPIPRRALKEVRLPQDPLVLVLLGLEK 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA       ++  +        V+    S  +     +      +A + + 
Sbjct: 119 PGNLGAILRSADGAGAHLVLVAEGVDLYSPQVIRN--STGVVFSLPVFPVAEEEAARFLE 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +  +   ++   +E     +A +LGAE +GL     + A +   + M G   +L
Sbjct: 177 EKGLYPVAATPRGERVYWEEDYRRGVAFLLGAEDRGLPEVWLKRAQARVRIPMRGRADSL 236

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ +AA+ LY      +
Sbjct: 237 NVAVSAALLLYEALRQRS 254


>gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae
           ATCC 23330]
          Length = 248

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
                +YG H ++A L    + I +L   +N   A  R   +        +       ++
Sbjct: 2   SNQRLIYGFHAINARLWQNPKSITELYVLENKADARTREVLEKAAAENVKLHFADQDRLN 61

Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +  K A HQG+            L   LD +R    L+VLD + DPHN+GA LR+A A 
Sbjct: 62  TMA-KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAM 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A ++K A GA E +PYI ++NL   L+++   G   +G      
Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L        +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+
Sbjct: 181 ADLFHYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240

Query: 278 NHFA 281
               
Sbjct: 241 RQRT 244


>gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 252

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      + +LL +K      +W   L   + +  +  +    I          A+ T  
Sbjct: 42  IRQDGLVV-ELLVSKGVSVPEEW---LKGNYDIFEISTEISHFISETMTEQGVFAVVTTT 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +    L+++D V DP N+G ++R+A A   D +I  +  +   +  + +S 
Sbjct: 98  EPDMMLLYGKK---LLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ +                  +  +  K L    K D +ALI+G EG G+
Sbjct: 155 QGSHFHIPVIQANLFDWIANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + Q   +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 270

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YG+H VSA L+   ++I +L   +N    RL             V  +    ++ +  +
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   + +         L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
 gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
          Length = 253

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 9/246 (3%)

Query: 42  HTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           +     N  +YGVH V+ AL  N   K++     +        +        +     ++
Sbjct: 9   NRDMKTNDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAAEKKVSISWTSKKS 68

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           + ++  + AVHQG  L  +      L+          + LL++LD + DPHN+G+ILR+A
Sbjct: 69  LSEMT-EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTA 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   
Sbjct: 128 DATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDM 187

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 188 NGTPCHKWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246

Query: 275 ITQNHF 280
               + 
Sbjct: 247 EVFRNR 252


>gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e]
 gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           Finland 1988]
 gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           FSL R2-561]
 gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459]
 gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161]
 gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064]
 gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175]
 gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e]
 gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99]
 gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208]
 gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816]
 gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A]
          Length = 252

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 109/278 (39%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +  + I  ++ +    QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  K  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  D  K L    K D +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
 gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
          Length = 256

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 10/256 (3%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           + +  +     Q +   ++G  +V   L +    I +L   +                P 
Sbjct: 4   RKYTVRKPAPKQSQADMVFGTQSVLETLRSGKE-IERLFIQREFGLAEIEKLAKELGVPY 62

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146
           + VP + ++++      HQG+    +P+    L            + LL++LD V D  N
Sbjct: 63  QRVPVEKLNRVT--RKNHQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDVRN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI R+A       II   +     +A   K++SGAL  +P  R  NL + L  + + G
Sbjct: 121 FGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRNSG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q I  +  + K L          +I+G+E  G+  +  + A S A + + G +++LNVS
Sbjct: 181 LQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLNVS 240

Query: 267 NAAAVALYITQNHFAK 282
            A++V LY       K
Sbjct: 241 VASSVVLYEAVRQRIK 256


>gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
 gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
          Length = 252

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 14/249 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            E+L++YG+H V +AL+N   ++ ++L  K   +A  +   D         + V     D
Sbjct: 2   SESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFD 61

Query: 103 KIVGKEAV----HQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           + + K+ +    HQG+   T          L   LD +    LL+VLD V DPHNIGA L
Sbjct: 62  RTLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+  A    G+I  K  S + +A   K ASGA + +P+  ++NL   L+++   G    G
Sbjct: 122 RTCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYG 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++   + Q      IAL++GAEGKGLR  T+E    + H+ M G + +LNVS AA V
Sbjct: 182 TAGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGV 241

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 242 CLFEVVRQR 250


>gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  +    K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEAFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRT 243


>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
 gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
          Length = 252

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 108/278 (38%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +    I  ++ +    QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEIS-AEISHLISETMTEQGVFAVVAT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  +  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  D  K L    K + +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
 gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D        ++  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGAVHQGIVARVREGRQYQENDLPGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 254

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 24/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   +                  +   K  +      +   +     + G H V  A
Sbjct: 1   MKRIESTQ------------------NALVKYWKKLATTRKERERSGEFLVEGFHLVEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N   ++ Q++  +     + W  +      +  V      +    E      A     
Sbjct: 43  LKN-KNQVLQIIVREGIDLPMLWPID---DIAIVEVSTAVAKEFAETETSQGVFA--VCK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +   + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A
Sbjct: 97  QPVLVDNVMTTWRKVLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R                       +   P          A+I+G EG G+
Sbjct: 157 QGSHFHIPVVRGDLAEWIDILQDQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGI 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +P+          + + G  ++LNV+ A  + LY
Sbjct: 217 QPQLLAMTDQNMIIPLFGQAESLNVAVATGIVLY 250


>gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C]
          Length = 272

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 138/270 (51%), Positives = 182/270 (67%), Gaps = 5/270 (1%)

Query: 15  LKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           LKDSHYA+LRR +R+ K    +  ++ ++     Q E ++LYG+H V AAL NP R +  
Sbjct: 2   LKDSHYARLRRRYRNTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVLRH 61

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L AT NAL RL  + +     PV +  P+ ++  VG+EAVHQG+ LET PL S  L  + 
Sbjct: 62  LYATPNALKRLGINESNIA-CPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLSELT 120

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI
Sbjct: 121 NTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 180

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL   LQ++H   F + GL S+ K PLE  +K  KI+LILGAEGKGLR KT+E A S
Sbjct: 181 TVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTRENAYS 240

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +A L +PG IK+LNVSNAAA+ALY    + 
Sbjct: 241 LARLDLPGDIKSLNVSNAAAIALYAVHKYL 270


>gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
 gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
          Length = 291

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 137/275 (49%), Positives = 184/275 (66%), Gaps = 13/275 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQ-----------PENLFLY 52
            K      S +DSHYA LRR HRD ++ +      +     +           P+ +FLY
Sbjct: 2   SKDKSGDKSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVFLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AAL+NP R I +L  T+NA ARL+        FPV+ V PQ +D+ +G +A+HQ
Sbjct: 62  GLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A+ +  L+++LD V DPHN+GAI+RSAVAF    +ITT R+SP+E
Sbjct: 122 GVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL D ++++H  GFQTIGL S+  +PLE      K+AL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           LG+EGKGLR KT++T T++A L MPG IK+LNVSN
Sbjct: 242 LGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSN 276


>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
 gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 285

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 29/287 (10%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           ++++  ++E++  + + H                   K +   +     + G   V   L
Sbjct: 14  DMLTSLQNEQVKYVVNLH-------------------KRKFREENGEFLIEGWRFVEEGL 54

Query: 62  NNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              +   K+F     KN       +A      PV  V  + + K+   E     LA+   
Sbjct: 55  ARGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGILAVVKQ 114

Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              +                 +L++LD V DP N G ILR+A+A     +  T+      
Sbjct: 115 SRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLY 174

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + +S  GA+  +         + L+   S         ++      +      +AL+
Sbjct: 175 NLKVLRSTMGAIFSLNIATHCQPEEILKVCRSHKIPVFVGDAEGTDLY-ETHFAQPMALV 233

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +G EG G     +        + M   +++LNV+ A  + LY  +  
Sbjct: 234 VGNEGNGPSAAFRGPGVKRITIPMSHQVESLNVAMATGIILYEVRRR 280


>gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
 gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
          Length = 256

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H+V AA+      + ++   + A     +           PV  V  + +D++  
Sbjct: 6   IIHGLHSVRAAVRYDPTHVVEVWLDRQARSGRWQALRRQLEALACPVHLVDRRQLDRLTS 65

Query: 107 KEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +          G        L   L  +    LL+VLD V DPHN+GA LR+A      
Sbjct: 66  GQVHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAAGAGVQ 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +IT +  +   +  + K+A+GA++HIP  +++NL   L+K+   G   IG +  +   L
Sbjct: 126 AVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQADVTL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   +  + L++GAE  GLR  T+     +  + M G I +LNVS A  V LY      
Sbjct: 186 YEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQR 245


>gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   +  V  + +D++  + 
Sbjct: 14  IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQLS-ET 72

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      ++ +             ++LD++ DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +      +    
Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLWFVCADMGGESMYR 192

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 193 MN-LTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250


>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 255

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 105/274 (38%), Gaps = 23/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I+   ++++   K                      + +   +     L G H V  A
Sbjct: 1   MDIITSSSNQRVKDWKKL-------------------SQKKARIKQGKYMLDGWHLVKEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +    + I ++L T++   R   +  +P    V  +       +    +   G+      
Sbjct: 42  ILFD-QPISEILVTQDFKHR--NELEVPDNVEVIEISDNVAKHLSETPSPQ-GIFAVVNL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +      + +   + LD V DP NIG ++R+A A    G++  +  +      + ++ 
Sbjct: 98  PENAEEKPKKATGAWLFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+     + +  A +             +D  +  +Q  ++   AL++G EG G+
Sbjct: 158 QGSQFHLKLCSGNLIEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  +  +   ++ + G  ++LNV+ AA + ++
Sbjct: 218 SEKLLKETSLNLYIPIKGHAESLNVAVAAGILMF 251


>gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNT-TGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 263

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 23/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I ++                       K++   +     + G   +S A
Sbjct: 1   MEKITSLQNPRIKNITKL-------------------AKNKERKEQNLFLIEGARELSLA 41

Query: 61  LNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +      I  +        +       +      +  V     +KI  +E     L L  
Sbjct: 42  MTADYE-INSVYVCPELFRKTDYPDVLDSIGENKLFEVSEAVFEKIAYREGSDGLLTLAV 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +     +  +  +++L+ V  P N+GAILR+A A   D +I     +       A 
Sbjct: 101 PKNHTLKDLQLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIIC-DPATDLYNPNAI 159

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            +S          + +  DAL  +     ++      + +  +    +   A+++G E  
Sbjct: 160 RSSVGCLFTVKTAVCSSRDALDFLRHKKIKSFAAELQASQWYQDTDFSIPSAIVMGTEAD 219

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GL       A +   + M G I +LNVS + AV  +      
Sbjct: 220 GLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQR 261


>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
          Length = 264

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 4/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLD 82
            +   K ++   Q++    +   L + GV  V  AL +  R    ++   A +N      
Sbjct: 7   QNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +           V    + ++   E     LA+   P             L++V+D V 
Sbjct: 66  LELAQRKCAQTYQVTAHIMSQLSDTETPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGVQ 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+RSA A    G++  K      +    ++  G+L H+P ++  ++  AL  +
Sbjct: 126 DPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLPVVKAEDVDGALAYL 185

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S G   I       +P+ +      +A+++G EG G R           ++ MPG  ++
Sbjct: 186 ASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKHVKVNIPMPGRAES 245

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ A ++ LY       
Sbjct: 246 LNVAMATSIMLYEAVRQRT 264


>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 269

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 107/283 (37%), Gaps = 22/283 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  +                  +   KK+ + ++K+R   +     + G   V  A
Sbjct: 1   MKEISSTQ------------------NPLIKKIFALSEKARMRKKEGLCVIEGAREVRLA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +      I  LL              L     P  V  +  +  +++  + +    +A+ 
Sbjct: 43  IQ-GGYDIETLLFQPEIFKEEALQQLLALYRKPIEVIRLSKEVYERLSYRSSTEGLIAVA 101

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P  +    A+R   +L+V +    P NIGA+LR+A A + +G+I     +   +  + 
Sbjct: 102 KTPPHTLEALALRERSILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNII 161

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++ G +  +P    S                    S SK   E        A+++G E 
Sbjct: 162 RASVGCVFTVPIAVGSTTEVIDYLKKKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTED 221

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +GL  +  + +T    + M G+I ++NVS AAAV ++  +   
Sbjct: 222 EGLTQEWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKKMR 264


>gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
 gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
          Length = 253

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGFWTFGTDMNGTPCH 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
 gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
          Length = 284

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 100/255 (39%), Gaps = 6/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +    +K++  ++ E   + G          P   + Q+  +++  A  D   
Sbjct: 18  SNQQMKNLMLLMKKAKARNEQELFVVEGRKMFQEV---PEEWLKQVYVSESFFAENDKML 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                +  + V       +   +     L L   P              L++L+ + DP 
Sbjct: 75  A---GYTYEIVSDSVFKAVSDTQTPQGILCLVRKPQYRLEELLKGADTHLLILESIQDPG 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G +LR+       G++         +    +S  G++  +P+    +L + + ++ + 
Sbjct: 132 NLGTMLRTGEGAGISGVVMNHTTVDLFNPKTIRSTMGSIYRMPFFVTRDLAETICELKNA 191

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +T       K   ++       A ++G EG GL  +T + A +   + M G +++LN 
Sbjct: 192 GVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLNA 251

Query: 266 SNAAAVALYITQNHF 280
           + +A++ +Y T    
Sbjct: 252 AISASLLMYETNRQR 266


>gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 249

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   A      L   LD +    LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L +
Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYR 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      +
Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244


>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 278

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 110/267 (41%), Gaps = 15/267 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  +K++   +     + G    S     P  ++ +   T++ L +   +A
Sbjct: 6   SNSQVKQVSAIAKKAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-----------PTLDAVRNSQ 133
             L      +TV  + +  +   +     LAL                        +   
Sbjct: 63  DRLLAGCRYETVTGEVMKAMADTQTPQGILALCRQFSYELSDILGERKEGDEHTQEKAPA 122

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++L+ + DP N+G ILR+       G+I     +   +  + +S  G++  +P++ + 
Sbjct: 123 QLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYVE 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L DA++++   G +        +K  +Q+        ++G E  GL  +T E A +   
Sbjct: 183 DLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYIK 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN + AA++ +Y T    
Sbjct: 243 IPMLGKVESLNAAVAASILMYETARQR 269


>gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 258

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 95/258 (36%), Gaps = 7/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDW 83
            +   K+++  +  ++   + +   L G H +  A       +  +  T +        W
Sbjct: 6   QNSLVKQIRKLH-STKERHKQQLFLLEGTHLLEEACAVNY-PLETVCCTSDWQAAHSSLW 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +         + V  + ++ I         +A          L     + L++ L+ V D
Sbjct: 64  EKASSKSDRTEIVSEEVLNAIATTVQPDGVVATAKRTDSQTQL---PFTGLVLALETVQD 120

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+  +      +S  + ++++G    +      NL   +Q+  
Sbjct: 121 PGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAMSVTENLKATVQQSQ 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +     +              ++LG EG GL       A     + +   +++L
Sbjct: 181 QAGMQVVATLPSATLTYWDVDWRKPSLILLGNEGAGLSADLAAIADKQVRIPLSPGVESL 240

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AAA+ LY  +   +
Sbjct: 241 NVAIAAALMLYEARRQMS 258


>gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
 gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
          Length = 242

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL   L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri
           ATCC BAA-895]
 gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +F L   ++        A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P           L A  ++  L++LD V DPHN+GA LRSA A  
Sbjct: 62  S-EGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
 gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLALAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D         +   ++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   +  V  + +D++  + 
Sbjct: 14  IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQLS-ET 72

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      ++ +             ++LD++ DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   +A +AK+++GAL + P  +++NL   ++++ + G   +      +    
Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKARGLWFVCADMGGESMYR 192

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 193 MN-LTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250


>gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +       ++  D    +   V     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            LD    + LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YDQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244


>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 264

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 107/273 (39%), Gaps = 10/273 (3%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +S KI  ++        ++++  K + S  Q+ ++  +     + G+  V+         
Sbjct: 2   ESPKIDYIQ-------SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDIGK--KDF 51

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  +L  ++  + L+             V    I   +      QG+       ++    
Sbjct: 52  LRSILIRESKRSELEPLVQKGFTVSSVYVVQDPIFDKIEHSVNGQGILGIAKKCVNDLHS 111

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL +I
Sbjct: 112 LIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNI 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P      L++    +     +T   S ++ KP        +  +ILG EG G+  +  E 
Sbjct: 172 PIFEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEM 231

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G I++LNVS AAA+ +Y  +   
Sbjct: 232 CDQAITIPMYGDIESLNVSIAAALCMYKVREQI 264


>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 314

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 102/269 (37%), Positives = 153/269 (56%), Gaps = 16/269 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           NHR+ +   +  +      +         L+LYG H V AAL N +RKI +++ T  AL 
Sbjct: 35  NHRESRHKSAPRRDPAKGGERPAKLPSNQLWLYGAHAVLAALANKARKIRRIVLTVEALR 94

Query: 80  RLDWDANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AV 129
                             +T   Q +D+++   AVHQG+A+    L SP ++        
Sbjct: 95  SHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLESPGIEDIGRLAQN 154

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  ++MVLD V DPHN+GAILRSA AF    ++ T R+SP E+  LAKSASGALE +P 
Sbjct: 155 RDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTLAKSASGALEVMPL 214

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R++N+  AL+++   GF T GL+ ++ + L Q   + KIAL++GAEG+GLR  T+E   
Sbjct: 215 VRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAEGEGLRRLTREHCD 274

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  L M  ++++LNVSNAAA++LY    
Sbjct: 275 HLVKLPMSDLVESLNVSNAAAISLYELAR 303


>gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna
           gm2251 2'-o-methyltransferase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 249

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   A      L   LD +    LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L +
Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYR 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      +
Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244


>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
 gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
          Length = 243

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL +       +++       L             V+  P + ++K    
Sbjct: 4   YIVGRNAVKEALKSGRSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQG+    + +    L     +   +  LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  EVPHQGVIALVSAVQFKELGEVLQETNHDVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
 gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
          Length = 252

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 10/248 (4%)

Query: 42  HTSQPENL-FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           H  +  N   + G + V  A  +     K+F L   ++   R        H   V+ V  
Sbjct: 4   HKDKHGNENMIEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTLVQFVDK 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152
           + + ++         +A   A   +   D             L++LD + DPHN+GAI+R
Sbjct: 64  ERLTQLSQTGRHQGVIAYTAAYEYAQVEDMLALAKERGEDPFLILLDDIEDPHNLGAIIR 123

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A +AK+++GA+ + P  +++NLT  ++++   G   +  
Sbjct: 124 TANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTKTMKELKEKGLWFVCA 183

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                + + +      I L++G EG+G+    +ET   +A + M G I +LN S A  V 
Sbjct: 184 -DMGGESMYKLNLTGPIGLVIGNEGEGVSRLVKETCDFVASIPMKGDIDSLNASVATGVL 242

Query: 273 LYITQNHF 280
            Y      
Sbjct: 243 AYEIVRQR 250


>gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           sanguinis SK408]
          Length = 242

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNT-TGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
 gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+VG    HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 273

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 10/265 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALAR 80
              +   K+++   ++ RH  Q     + G   V  AL       + I+           
Sbjct: 5   SPQNPRIKRLRKLQER-RHRRQLGATLVEGRRFVEEALAAGRPVRQAIYTAAFAAAPAGA 63

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL------SPTLDAVRNSQL 134
               A       +  V  + ++ +   E     +A                  A     L
Sbjct: 64  ALLRALAAAGTELAEVTDRLLEAVAMTETPQGIVAEVAVDEPAPVGPAWWRQVAEGRLPL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++ D V DP N+G ++R+A      G +              ++++GA   +P  R  +
Sbjct: 124 ALLPDGVQDPGNLGTLVRAAAGLGAAGAVLVPGTVDPFHPRAVRASAGACLRLPMARADS 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A +   + G       +++  P           L++G EG G+ P+ Q  AT    +
Sbjct: 184 AAGAAESARAAGLAVWVAEAEAATPCWAVDWRRPCLLVVGNEGAGVSPEVQRYATGRVAI 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            + G I +LNV+ A  + LY     
Sbjct: 244 PLAGGIGSLNVAMAGCILLYEAARQ 268


>gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 243

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+     +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 254

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 5/256 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           +  +       +   +                   +     LL   D 
Sbjct: 61  LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL---DD 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+         
Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +       L   + K L       ++ALI+G E  G+ P+    A    ++ + G  
Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + AA + +Y  
Sbjct: 238 ESLNAAVAAGIMIYHF 253


>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 243

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  AL +       +++       L             V+  P + ++K    
Sbjct: 4   YIVGRNAVKEALRSGRSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNKY-DL 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       +
Sbjct: 63  EVPHQGVIALVSAVQFKELGEVLQETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L +
Sbjct: 123 LIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYE 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 183 ADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 247

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
 gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            +   + G H V  AL +  R I ++   + A   L          H   V+ V  + +D
Sbjct: 6   NQEEMIAGKHPVMEALRSG-RDINKIWIAEGAQKSLTQPIVAEAKQHGVIVQFVDKRKLD 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +V        +A   A   +   D       +  +  L++LD + DPHN+G+ILR+A  
Sbjct: 65  TMVEGVQHQGVVAQAAAFAYAEIEDLLARARELNETPFLLILDEIEDPHNLGSILRTAEC 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S   +A + K+++GA EH+P  R++NL   + ++   G    G    +
Sbjct: 125 TGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTIDRLKEEGVWVAGTDVSA 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + + +   +  +A+++G EGKG+    +E    +  L M G + +LN S AA V +Y  
Sbjct: 185 PQDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLPMHGRLNSLNASVAAGVLMYEV 244

Query: 277 QNHF 280
               
Sbjct: 245 VRQR 248


>gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM
           10]
 gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Antiqua]
 gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Nepal516]
 gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Pestoides F]
 gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125]
 gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Angola]
 gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1]
 gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003]
 gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10]
 gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516]
 gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua]
 gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92]
 gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F]
 gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125]
 gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis
           Angola]
 gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis YPIII]
 gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004]
 gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038]
 gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003]
 gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 246

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         +  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 249

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           + E  ++ G + V  AL +    +KI+   A++  + +            ++ VP Q ID
Sbjct: 2   ENEQEWIGGRNPVLEALRSERDIQKIYIAEASQKGVMKQVIALAKERKLQIQFVPKQKID 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+V  E  HQG+A + +      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  KVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII   R S   +  +AK+++GA+EHIP +R++NL   +  +   G    G  + 
Sbjct: 120 AVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDRGLWIFGTDAK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +  + +++G+EG G+    +E    + HL M G + +LN S AA++ LY 
Sbjct: 180 GSSDYRTMDVDMPLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTSLNASVAASILLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VYRKR 244


>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 259

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYFVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +K D + + +G EG G+    +  +     + MPG  
Sbjct: 179 LRKKGFKLLVSSLDTNSNFYDVNMK-DNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 250

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   ++  A       +    H  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244


>gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V+ AL +     K+F L   ++   R        H   +  V  + +D +    
Sbjct: 10  IEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSMSETG 69

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D             + +LD + DPHN+GAI+R+A      G+
Sbjct: 70  KHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLAGAHGV 129

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GA+ + P  +++N+   ++++   G   +   +   + +  
Sbjct: 130 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCA-AMDGEVMYN 188

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++GAEG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 189 LDLKGPIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIVRQR 246


>gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
 gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
          Length = 264

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 103/248 (41%), Gaps = 11/248 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + +  E   + G + V  A  +     K++ L   ++ +              +  +   
Sbjct: 16  NENAEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGVVNSIVREAKKQDTVINYLSKD 75

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            ++++  +   HQG+    A      ++ +              +LD + DPHN+GAI+R
Sbjct: 76  KLNQMS-QAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDPHNLGAIIR 134

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A + K+++GA+ + P  +++N++  ++++   G      
Sbjct: 135 TANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKERGMWFACA 194

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             D +   +       + L++G EG G+    +E    +  + M G I +LN S AA V 
Sbjct: 195 DMDGELMYKCN-LTGSLGLVIGNEGNGVSRLVKEKCDYVVSVPMKGDIDSLNASVAAGVL 253

Query: 273 LYITQNHF 280
            Y      
Sbjct: 254 AYEVVRQR 261


>gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
 gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
          Length = 242

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 247

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
           391-98]
          Length = 254

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVKNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  +      +  VP   +  +   E      A+    
Sbjct: 42  LKAD--IVTELIVSDQTDLPKDWIVS---DVEMYIVPEPIVKVLRETETTQGVFAVCEKQ 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  EKEVELSNGK----FLLLDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +   + + K+ +      G + ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPVVKGNLE-EWIDKLKTHNVPVYGTALENGVPYGEITPTGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                       ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 HQDILAKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 246

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
           +  +  + G + V  AL +  R I ++L  K  L+    +       +  PV+ V    +
Sbjct: 2   KNLSDVIVGRNPVKEALKS-QRPINKVLVAKGKLSGSLAEICSLARQNGIPVQEVDRTAL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +KI   EAVHQG+A   A      L+ +          +++LD + DPHN+GAI+R+A A
Sbjct: 61  EKISA-EAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPHNLGAIIRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G++ T+R S   + V+AKS++GA+E++P  R++NL  +++ +   G    G   + 
Sbjct: 120 AGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQENGIWVAGADMEG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K   +   +  IA+++G EGKGL    +E    +  L M G I +LN S A A+  Y  
Sbjct: 180 DKVYWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNASVATALLAYEV 239

Query: 277 QNHFA 281
               +
Sbjct: 240 VRQRS 244


>gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 242

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 276

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 104/275 (37%), Positives = 153/275 (55%), Gaps = 2/275 (0%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
            K+     +     +   R  H   +      +  R  S    L+LYG+H+V AAL NP+
Sbjct: 2   DKRDSHGKAGNGGRHKLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPA 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R++ +L+ T+   A L      P P   + +    +D+++G+  VHQG+AL+  PL+ P+
Sbjct: 62  RRLRRLVVTEEGEAALAGRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121

Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           L DA++    ++VLD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGAL
Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPK 243
           E IP +R  N+  AL  + + G   +GL +          I N + AL+LGAEG+GLR  
Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+ET   +  L MPG +++LNVS AAAVALY    
Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 245

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +                      + +H        L G H    A
Sbjct: 1   MEIIQSKQNASIKTARKL-------------------LQRKHRKTS--YLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R+       +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGADILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QSQALPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R   L                  S+     +    +   AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKHDLTVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 210 SKEMAESADQLVHINMPGQAESLNVAVAAGIIMF 243


>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
 gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
          Length = 250

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 3   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     ++              L++LD + DPHN+G+ILR+A 
Sbjct: 62  QMV-PGVQHQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G++  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 121 CTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180

Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   + E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 181 AVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 EVLRRR 246


>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 260

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 100/255 (39%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +    +K+R  ++     + G   V  A   P  ++  +  ++      +  A 
Sbjct: 7   NDQVKAVIELKKKARARNEQGLFVVEG---VRMAAELPKDQVKSIYVSETFAKNPENAAI 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDPH 145
           L      + V       +   +     LAL          L        LMVL+++ DP 
Sbjct: 64  LAEYPGYELVSDSVFAVMSDTQTPQGVLALVRQFSYGMDELLKSDRPAHLMVLENLQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+       G+I ++      +  + +S  G++  +P+    +L   +  + + 
Sbjct: 124 NLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPFFYTDDLEQTVLDLKAR 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +        K   EQE      A ++G EG GL  K  + A +   + M G +++LN 
Sbjct: 184 GIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMADTWVKIPMEGKVESLNA 243

Query: 266 SNAAAVALYITQNHF 280
           + AA++ ++ T    
Sbjct: 244 AIAASILMFETARQR 258


>gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 263

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 102/256 (39%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDW 83
            +   K+++  +  ++   + +   L G H ++ A  +N P   +   +  +N+ + L  
Sbjct: 6   QNPLVKQIRKLH-SAKERHKQQLFVLEGTHLITEACSVNYPLETVCCTMDWQNSHSELWQ 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +         + V  + +  +    A         A +       +  + L + L+ + D
Sbjct: 65  NVCNA-CHRTEIVSQEVLAAM----ATTVQPDGVVAMVKRCEDHPIPMTGLALALETIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+  +      +   + ++++G    +      NL D +Q   
Sbjct: 120 PGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSHNLKDTVQDCQ 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +     ++    Q   +    ++LG EG GL  +    A     + +   +++L
Sbjct: 180 RGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDELATMANIQVKIPLSPQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +A++ LY  Q  
Sbjct: 240 NVAISASLILYEAQRQ 255


>gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
 gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 11/248 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
             ++ E   + G + V  A  +     K++      +                +  V  +
Sbjct: 2   EENRNEKFEIEGRNAVMEAFRSGKTVDKLYLQDGCHDGSINSIVREAKKQETIINYVSKE 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            ++++      HQG+    A      +D +            + +LD + DPHN+GAI+R
Sbjct: 62  KLNQMSS-TGKHQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAIVR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A + K+++GA+ + P ++++NL   + ++   G      
Sbjct: 121 TANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFACA 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             D +           + L++G EG G+    +E    +  + M G I +LN S AA V 
Sbjct: 181 DMDGELMYRCN-LTGPMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVL 239

Query: 273 LYITQNHF 280
            Y      
Sbjct: 240 GYEVVRQR 247


>gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 253

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 134 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
 gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
          Length = 257

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 98/254 (38%), Gaps = 7/254 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  +++    + SR   +       G+         P  +  ++  + + L     + 
Sbjct: 6   QNKQIRQVIKLKKSSRERKRTGLFVAEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P + V P+   +I   E     L+L      + +    R+   +++L+++ DP 
Sbjct: 63  ---KGIPFEEVSPKVFREISDTETPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDPG 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+       GII ++      +  + +S  G++  +P+    +L + ++ +   
Sbjct: 120 NLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQ 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    +       E  +   A ++G EG GL  +    A     + M G +++LN 
Sbjct: 180 SVHVYAAHLNGTDYT-DESYDKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNA 238

Query: 266 SNAAAVALYITQNH 279
           + A  + +Y  +  
Sbjct: 239 AMAGGLLMYEARRQ 252


>gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974]
 gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
 gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
 gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
          Length = 242

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 26/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  +   K+  +  LK  H                   + +     +   L G H V  A
Sbjct: 1   ME-MQSTKNTYVKELKKLH-------------------RKKGRQDQQRYLLEGFHLVEEA 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +N+ +  +  L++ + A     W         V  V  + +  I  +      +A+   P
Sbjct: 41  VNSQAEVVDILISPRGAKEWAAWIEEQA--LDVTYVSEEVMAAISEQPTPQGIMAVVALP 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +  +R     ++LD+V DP N+G ++R+A A    G+   +  +   +    +S 
Sbjct: 99  R----VKEMRVKGKWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HI     +                    ++     +   K D++ALI+G EG+G+
Sbjct: 155 QGSHFHIEIQNGTIQDICQVFKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGV 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +      +  ++ + G  ++LNV  AA + +Y  
Sbjct: 215 AKEILAQTDANLYIPIYGKAESLNVGIAAGILMYHF 250


>gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 270

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 117/284 (41%), Gaps = 26/284 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             IS +++E I  LK  H                     ++  +  +    G+  V  A+
Sbjct: 7   EFISSRENECIKRLKKLHDK-------------------KYREEFRSFITEGLKLVREAI 47

Query: 62  NNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLA 115
           +     I  ++ +++A  R          L     ++ V   P  + + +   +  QG+ 
Sbjct: 48  DYQIECINLVIFSQHAKDRYQEFYWECKRLLEDGKIERVIEVPDKLFEYITTTSTPQGIL 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +    ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      +  
Sbjct: 108 AECNFVDKG-INFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G 
Sbjct: 167 TIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGN 226

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 227 ESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 257

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 104/255 (40%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K++    + +R   + E   + G+   +     P   ++++ A+++     +   
Sbjct: 6   QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDF---YNEHR 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     V+ V PQ + +I         LAL      S      +   L +VL+++ DP 
Sbjct: 60  VIFEHMDVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPG 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+      +G+I +       +  + +S  G++  +P++ + +L +  + M   
Sbjct: 120 NLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQK 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T     +      +E      A  +G EG GL  K  +       + M G +++LN 
Sbjct: 180 NIITYAAHLNGTDYT-KEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNA 238

Query: 266 SNAAAVALYITQNHF 280
           + A+ + +Y  +   
Sbjct: 239 AMASGLLVYEARRQR 253


>gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 242

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+ + GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
 gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
          Length = 246

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++   K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNKSQG 64

Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       ++  LL++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRTADATGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I  K  S   ++   K A GA E +P IR++N      +         +G + ++   + 
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 185 EAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQ 242


>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           Y412MC10]
          Length = 256

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 9   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     +D              L++LD + DPHN+G+ILR+A 
Sbjct: 68  QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 126

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 127 CTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 186

Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   + E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 187 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 246

Query: 275 ITQNHF 280
                 
Sbjct: 247 EVLRRR 252


>gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262]
 gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e]
 gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes Clip81459]
 gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S]
 gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161]
 gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL
           J2-064]
 gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL
           J1-208]
 gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL
           J2-003]
 gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL
           J1-175]
 gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e]
 gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262]
 gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220]
 gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           Scott A]
          Length = 251

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 244

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K     RL    +        ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFIEVYVLKGREDRRLTPLIHALESIGMTIQLANRQWLDNQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P           L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 29/278 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  I   K+ KI   K                        +   + E   + G H V  A
Sbjct: 2   LKHIQSAKNPKIKEWKKLLTK-------------------KERDKTETFLVEGFHLVEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I +++ ++N      WD       PV  V  + I ++   E      A     
Sbjct: 43  LKANQ--IAEIIISENKDMPPGWDY---GDIPVTMVTEEIIGQLADTETPQGIFA--VCS 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + +      LL+  D V DP N+G ++R+A A   D +I  +    + +  + +SA
Sbjct: 96  QEPSSEEVKGKRFLLI--DAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSA 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P +R +      +   S          ++++  + E  +D  AL++G EG G+
Sbjct: 154 QGSHFHLPVLRGNLSDWIGRLKESKVPVYGTALENAREYTKYES-SDSFALLVGNEGNGV 212

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      +  ++ + G  ++LNV+ AA + LY  + 
Sbjct: 213 NKELLANTAANLYIPIFGKSESLNVAVAAGILLYHLRK 250


>gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
 gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
          Length = 263

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNDDRFKE 62

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V       +   +     LA+   P          +   L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYITQNHF 280
            + +A + +Y      
Sbjct: 243 AAISATLLMYECNRQR 258


>gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS185]
 gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS195]
 gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS185]
 gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS195]
 gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS678]
          Length = 246

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +        +  +        ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum
           JF-5]
          Length = 276

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 104/275 (37%), Positives = 153/275 (55%), Gaps = 2/275 (0%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
            K+     +     +   R  H   +      +  R  S    L+LYG+H+V AAL NP+
Sbjct: 2   DKRDSHGKAGNGGRHKLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPA 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R++ +L+ T+   A L      P P   + +    +D+++G+  VHQG+AL+  PL+ P+
Sbjct: 62  RRLRRLVVTEEGEAALAGRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121

Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           L DA++    ++VLD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGAL
Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPK 243
           E IP +R  N+  AL  + + G   +GL +          I N + AL+LGAEG+GLR  
Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+ET   +  L MPG +++LNVS AAAVALY    
Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 253

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   ++  A       +    +  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + + ++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244


>gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1]
          Length = 255

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105
           ++ G + V  A  +     K+F L   ++   +        H   +  V  + +D++   
Sbjct: 13  YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQMSET 72

Query: 106 ----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               G  AV           +    +       +++LD + DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +         + 
Sbjct: 133 IIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCA-DMGGTTMY 191

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  I L++G EG G+    +E     A + M G I +LN S A  V  Y       
Sbjct: 192 DLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQRL 251

Query: 282 K 282
           K
Sbjct: 252 K 252


>gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
 gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
          Length = 253

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
 gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
                +YG H V+A L    + I +L   +N   A  R   +        V       ++
Sbjct: 2   SNQRLIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLN 61

Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            I  K A HQG+            L   L+ +R    L+VLD + DPHN+GA LR+A A 
Sbjct: 62  TIA-KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAM 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G   D +
Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L      + +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + +  T+
Sbjct: 181 ADLFHYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETR 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 249

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I +L      ++   +   +        V+ VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPDSIKELYVEASRRDKRMQTFIEQAQAANIRVRPVPAERLDGLAR 65

Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                  +AL  A  ++         L+      LL++LD V DPHN+GA LR+A A   
Sbjct: 66  GTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDPHNLGACLRTADAAGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  +   ++ + + A GA E +PYI ++NL   ++++ S     +G    +   
Sbjct: 126 HAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKSRDVWLVGTDDQATGS 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +A ++GAEG+G+R  T+ET   +  + M G +++LNVS A+AV LY +   
Sbjct: 186 LHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLNVSVASAVCLYESVRQ 245

Query: 280 FA 281
             
Sbjct: 246 RT 247


>gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
 gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
          Length = 260

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b]
          Length = 249

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ +  RL            P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +AL +A            L+  +   L+++LD + DPHN+GA LRSA A   D
Sbjct: 65  EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  L
Sbjct: 125 FVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY      
Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GQ 246


>gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +        +++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
 gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
          Length = 264

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 100/259 (38%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  +K +   +     + G+        +   +++      N   +     
Sbjct: 6   SNAKVKRLVNLKKKKKLRDEEGVFLVEGIRMFREVPKDRLVEVYASEEFWNRERKAVEQV 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHV 141
                   + +     + +       QG+            + V+       LL+VLD +
Sbjct: 66  LAGTKVQPEILADFVFEYVSD-TKTPQGILCLVRQKQYSITEIVKEKGGELPLLLVLDQI 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A      GI+ ++      +  + +S  GA   +P+  + +L + +++
Sbjct: 125 QDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVDDLAEEVKQ 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           M   G  T     + K   ++E      A ++G EG GLR +  + A     + M G ++
Sbjct: 185 MKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIRIPMKGQVE 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + A A+  +      
Sbjct: 245 SLNAAVATAILTFEAARQR 263


>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 261

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 104/255 (40%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K++    + +R   + E   + G+   +     P   ++++ A+++     +   
Sbjct: 10  QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDF---YNEHR 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     V+ V PQ + +I         LAL      S      +   L +VL+++ DP 
Sbjct: 64  VIFEHMDVELVSPQVMKEISDTMTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+      +G+I +       +  + +S  G++  +P++ + +L +  + M   
Sbjct: 124 NLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQK 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T     +      +E      A  +G EG GL  K  +       + M G +++LN 
Sbjct: 184 NIITYAAHLNGTDYT-KEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNA 242

Query: 266 SNAAAVALYITQNHF 280
           + A+ + +Y  +   
Sbjct: 243 AMASGLLVYEARRQR 257


>gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 251

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRS-ERDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
 gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae
           R6]
 gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
 gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
           [Streptococcus pneumoniae R6]
 gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
          Length = 253

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
 gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
          Length = 251

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTI 101
             ++  +YG+H V A ++   ++I  L   K    +               V+TV  + +
Sbjct: 2   NNDDDIVYGLHAVQALVDGSPQRIQTLWLLKGRNDQRLQSIRSVAEKSRITVRTVAREKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAI 150
           D +V  E  HQG+      +     +                  ++VLD V DPHN+GA 
Sbjct: 62  DGMV--EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGAC 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A     +I  K  S S +  + K A GA E +P +R++NL+  L+ + S G   +
Sbjct: 120 LRSAEAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLV 179

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++++   Q      +A+++GAEGKGLR  T+E   S+  + M G + +LNVS A+ 
Sbjct: 180 GAAGEAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASG 239

Query: 271 VALYITQNHFA 281
           + L+      +
Sbjct: 240 ICLFEALRQRS 250


>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
 gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
          Length = 265

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSLQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         +    +                +  VP   +  +   E      A+    
Sbjct: 53  LKAGVAVELIVSDQTDLPKDWTV-----SDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVDLTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +              ++     +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTA-LENGVSYGEVTPTGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILTKCDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EHIP  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 264

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 100/258 (38%), Gaps = 1/258 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-D 82
             ++   K +    ++S+  ++ +     G        +    +I ++   ++   +   
Sbjct: 4   SSSNSQIKNLIKLQKQSKVRNELKVFVCEGKKMFEEVASQQRNQIKKVYLAESYYHQYTK 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +         + +  Q + +          LA+   P+ +       +S  L++L+ + 
Sbjct: 64  QNPEYLKGLDFEVLSDQVMKEASETITPQGILAIVKQPIYTLKDMTSGDSIRLLLLEDIR 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A      GI+ +K      +  + +S  GA+  +P+    +    L ++
Sbjct: 124 DPGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQI 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +                ++     K A+++G E  GL  K    +T    + M G +++
Sbjct: 184 KNEEIAIYAAHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVES 243

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AAAV +Y +    
Sbjct: 244 LNAAIAAAVLMYESYRQI 261


>gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
 gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
          Length = 249

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +          P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSSQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +AL +A            L+  +   L+++LD + DPHN+GA LRSA A   D
Sbjct: 65  EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G + +++  L
Sbjct: 125 FVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY      
Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GQ 246


>gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 THKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 262

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +    + ++ ++     + G   V  A+       + +L         + 
Sbjct: 6   SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIRANLDIEYFILTEIGYEKLDNY 64

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            D +      V  +      ++   E     +A+      +            +  D V 
Sbjct: 65  IDKDKMKKHKVFCITDTLFKELASTENPQGIIAIVKMDNKNLNF----QGDFYLFCDKVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P     +    ++ +
Sbjct: 121 DPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKSL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF  I  S +S K   +E    KI L +G EG G+  +  + A     + MPG  ++
Sbjct: 181 KKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ +Y     
Sbjct: 241 LNVAIATSIIIYEKVRQ 257


>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
 gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
          Length = 264

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  K                  +++  K++ S  Q+ ++ ++     + G+ ++   
Sbjct: 1   MEFIQSK------------------DNKTIKRIVSLGQR-KNRNKHGEYIVEGIRSIRDI 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
            +N    I  ++  ++     + +A L        P         DKI       QG+  
Sbjct: 42  SSNG--VIKTIVIRESKFKDNNIEALLALDSMQSIPTYIAQDPIFDKI-DNTVNGQGIIA 98

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             A              + + LD V DP N+G I+R+AVA    GI   K      +   
Sbjct: 99  IVAKPNHSIESISIEDGVYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKT 158

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S   AL  IP      L+     +      T   + +  KP      + +  LILG E
Sbjct: 159 VRSTMSALHKIPVYEDVTLSMLNDLIAESNMSTYVTALEESKPYNMVTYDKRCMLILGNE 218

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G G+ P+          + M G I++LNVS AAA+ +Y  Q   
Sbjct: 219 GNGVTPEVMNLCKHRIMIPMYGDIESLNVSVAAALCMYKAQEQL 262


>gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
 gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
          Length = 249

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHP--FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ +  RL            P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +AL +A            L+  +   L+++LD + DPHN+GA LRSA A   D
Sbjct: 65  EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  L
Sbjct: 125 FVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY      
Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GQ 246


>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
          Length = 313

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 131/273 (47%), Gaps = 13/273 (4%)

Query: 20  YAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
            A+ R  H  YKK   +    + RH  +  +  + G + V   L+   P+  ++ +  TK
Sbjct: 39  KAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTK 98

Query: 76  N-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LD 127
           N                P+  VP   +D + G   +HQG+ L+  P    T       ++
Sbjct: 99  NDNRLSEAVQIAHSRGIPMIEVPRHEMDLMTG-NGMHQGIGLQIPPYKYTTVFDLIGRIN 157

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +     +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G    +
Sbjct: 158 STGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARL 217

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  + +N+T A+Q+    G+Q +GL +     L+    +  + +++G+EGKG+    ++ 
Sbjct: 218 PVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDN 277

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             S+  + M G +++LN S AA V L       
Sbjct: 278 CDSLMSIPMAGWVESLNASVAAGVVLSEFARQR 310


>gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS155]
 gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS155]
          Length = 246

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +        +  +        ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
          Length = 270

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N   +      +        V  +    ++ +  +
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   + +         L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
          Length = 250

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N   +      +        V  +    ++ +  +
Sbjct: 7   IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   + +         L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 67  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 125 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 185 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 244


>gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
 gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 253

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 251

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
 gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V+A L+        L+       R   
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMPAQCLV--SERHIRHPE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A +       TV     +       V  G+ L                   ++LD + D
Sbjct: 64  VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDADCVILDGIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++ 
Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHSRLQ 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +K+ +     N  +  + G EG G+  +     T+   +  PG +++L
Sbjct: 184 VPL---LATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGMESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ L+      
Sbjct: 241 NVAAAAAICLFEAVRQR 257


>gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 242

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
 gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
          Length = 241

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V  AL    +K+++++ +     +           P K    + +D +    +
Sbjct: 4   YVYGKNVVK-ALLADKKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFS-GS 61

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A +     + T++          + L ++LD + DPHN+GAILR+      DG+I
Sbjct: 62  NHQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  +AK ++GA++ +    ++NL   L+ +   GF   G   D+ +   Q 
Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + L++G+EG G+ P  ++       L M G + +LN S A AV LY       
Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQRN 239


>gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
          Length = 249

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +          P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +AL +A            L+  +   L+++LD + DPHN+GA LRSA A   D
Sbjct: 65  EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G + +++  L
Sbjct: 125 FVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHLL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY      
Sbjct: 185 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GQ 246


>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
 gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
          Length = 251

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +       +   +    +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P            LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q   
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 243


>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus 10329]
          Length = 247

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P           + A   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
 gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
          Length = 252

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 8/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K  Q     S+   + E   + G H V  A+ +    I +L+ +++ +   + 
Sbjct: 6   SHQNAMVKNYQKLQT-SKGRKKSEAYMIEGEHLVEEAIQSNI-SIQRLVVSEDTIQFYE- 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                  +P   V  +  +K+      +QG+         P ++  +   LL   D V D
Sbjct: 63  --KWTKSYPTMFVSKEVFEKLS-MTQTNQGILAIVPLEKKPLVEVPQGRYLL--ADAVQD 117

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A   D ++  +      +  + +S  G+  H+     + +    +   
Sbjct: 118 PGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVAIYHENLMDVYGKLKE 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +       K  +     D +A+++G EG G+R +  E+A  +  + M G  ++L
Sbjct: 178 NDIPIAVTALHRDAKDFKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESL 237

Query: 264 NVSNAAAVALYITQ 277
           NV+ A  V +Y T+
Sbjct: 238 NVAIATGVLMYQTR 251


>gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
          Length = 248

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
                +YGVH V  +L      K++     +        D       P+   P +T+  +
Sbjct: 8   ENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPKKTLSDM 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K AVHQG  L  +       +         ++ LL++LD +NDPHN G+ILR+A A +
Sbjct: 68  T-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILRTADATN 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   G   +   
Sbjct: 127 VTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGTDMNGTP 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 187 STQWNT-SGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFR 245

Query: 279 HFA 281
           +  
Sbjct: 246 NRK 248


>gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
 gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
          Length = 248

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATGLVVQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +A           D         S  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  VEGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A+  K ASGA E++P IR++NL   L+ +       +G + ++   
Sbjct: 122 HAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 LYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
           + E   +YG  TV AAL + +      +  K   +       +        +  V P+ +
Sbjct: 102 ELEQEIIYGRQTVLAALKSQATLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSPKRL 161

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           + +    A HQG+A +  P     L+           + +L+VLD + DPHN+GAI RS 
Sbjct: 162 NALTA-GANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSV 220

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R +   ++ + K A+GAL  +P  R+ NL  AL+ +   GF   G +S
Sbjct: 221 EAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTS 280

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               P+        IAL++G+EG+G+   TQ     +  + + G  ++LN S AA +ALY
Sbjct: 281 RGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALY 340

Query: 275 ITQNHFA 281
                 +
Sbjct: 341 EIHRQRS 347


>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 269

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 6/269 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +S        +   K +     KSR   +  N  L G+     AL      I  +   + 
Sbjct: 2   NSTKHISSLQNTLIKNVLVLKDKSRERKKTGNFILEGIREFELALK-GFYTIETVFYAEG 60

Query: 77  ALA--RLDWDANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNS 132
                +++         PV   V  +   KI  +E     LA+ +    +   L     +
Sbjct: 61  LFPESKIEELTATLAYQPVLISVSKEVYQKIAYRETTEGILAIAKAKTHILSELKFKNKN 120

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V +    P NIGA+LR+A A + D +I                +S        I  
Sbjct: 121 PLVLVAEAPEKPGNIGALLRTADAANLDAVII-ANPKTDLYNPNIIRSSVGCVFTNPIAT 179

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N T+ +  +          +  + K           A+++G E  GL  +  E AT   
Sbjct: 180 GNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTPSAIVVGTEATGLSEEWLENATQNI 239

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M G I ++NVS +AA+ ++  +   +
Sbjct: 240 IIPMEGEIDSMNVSVSAAILIFEAKRQRS 268


>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
 gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
          Length = 265

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 ESEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +    +    ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 SQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
 gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
          Length = 251

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +       +   +    +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P            LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  +   
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQR 243


>gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
 gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
          Length = 246

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103
            +  ++G+H V   L     ++ ++   K                +   ++ V    +D 
Sbjct: 2   NDEIVFGIHAVKNLLKRSPERVREIFLQKGRDDERLMDIVQLANKNSINLQAVKKTVLDD 61

Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               +  HQG+     P+ S         LD++     L+VLD V DPHN+GA LR+A A
Sbjct: 62  RA--QGNHQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  +   +A ++K A GA E +P+ +++NL   ++++   G    G + ++
Sbjct: 120 AGVHGVIAPKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + + +      IA+++GAEGKGLR  T+E    + ++ M G + +LNVS A  V L+  
Sbjct: 180 SESVFKTDLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEA 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
 gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
          Length = 247

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
 gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
          Length = 250

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 3   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     +D              L++LD + DPHN+G+ILR+A 
Sbjct: 62  QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 121 CTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180

Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   + E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 181 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 EVLRRR 246


>gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK36]
 gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative
           [Streptococcus sanguinis SK36]
 gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++              D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           L99]
          Length = 251

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKDRKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 279

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ NQK ++ ++       G+  V  ALN        +L+       +  + 
Sbjct: 16  SNPIIKSLKALNQK-KNRNRDGVFMAEGLKLVIDALNLGWAIQTLILSKNKVGNTVIENI 74

Query: 86  NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V     + ++ I  ++     + +         +       + + LD V 
Sbjct: 75  AARTVARGGFVIKASQKVMESITRRDNPQTVVGIFKQQWHPIEMIKGLTQDVYIALDRVR 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G++     +   S    ++  G++  +P  R S         
Sbjct: 135 DPGNLGTIIRTADAVGAKGVMLIGETTDPFSPETVRATMGSIFSVPLYRFSESAFLNWST 194

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H  G         S      ++K   I L++G E +GL     +    +  +   G   +
Sbjct: 195 HFKGIIIGTHLKTSVDYRSVDLKKGPIILLMGNEQQGLPDVLADRCDQLVRIPQNGRADS 254

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A AV LY  + 
Sbjct: 255 LNLAIATAVMLYEIRR 270


>gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
 gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 254

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 99/256 (38%), Gaps = 5/256 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           +  +       +   +                   +     LL   D 
Sbjct: 61  LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL---DD 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+         
Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +       L   + K L   +   ++ALI+G E  G+ P+ +  A    ++ + G  
Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 237

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + AA + +Y  
Sbjct: 238 ESLNAAVAAGIMIYHF 253


>gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae
           TIGR4]
 gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
 gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae TIGR4]
 gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter
           propionicigenes WB4]
 gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 13/250 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVP 97
           ++  +PE   ++G+  V  A+      I ++L  ++  + L  +          PV+ VP
Sbjct: 5   KNKRRPEKDMIFGIRAVIEAIQAGKE-IDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
            + ++K+      HQG     +P+    ++ +            ++VLD V D  N GAI
Sbjct: 64  LEKLNKMT--VKNHQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+      D I+   +   S +    K+++GAL  IP  R  NL +AL+ + S G + +
Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S  + K   +    + IA+I+GAE +G+ P        M  + M G I +LNVS AA 
Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241

Query: 271 VALYITQNHF 280
           V +Y      
Sbjct: 242 VLIYEAVRQR 251


>gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 333

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 122/292 (41%), Gaps = 17/292 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------PENLFLYGVHTVSA 59
           + +E+             R  R   + + FN++                  L G ++V  
Sbjct: 43  RSNERPERSGGRPERSNERPERSSGRPERFNERPPRIENKEMEDLNEGLDKLEGRNSVLE 102

Query: 60  ALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           A+ +     KI      K    +            V+     ++DKI    + HQG+   
Sbjct: 103 AIKSDRTINKILVSKGDKEGSIKQIIALAREKGIIVQETDRVSLDKISTTHS-HQGVIAF 161

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            A      +D +         +  +++LD + DPHN+G+ILR+A A    G++  KR + 
Sbjct: 162 VAVKDYVEVDDILEIAQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAI 221

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +A ++K+++GA+E++P  R++N+   +  +       +G     +K   +      IA
Sbjct: 222 GLTAAVSKASAGAIEYVPVARVTNIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGPIA 281

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L++G+EG+G+     E    + +L M G I +LN + A A+ +Y       K
Sbjct: 282 LVIGSEGEGMGKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQRGK 333


>gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
 gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
          Length = 248

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
                +YGVH V  +L      K++     +        D       P+   P +T+  +
Sbjct: 8   ENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPKKTLSDM 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K AVHQG  L  +       +         ++ LL++LD +NDPHN G+ILR+A A +
Sbjct: 68  T-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILRTADATN 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII TK  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   G   +   
Sbjct: 127 VTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGTDMNGTP 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 187 STQWNT-SGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFR 245

Query: 279 HFA 281
           +  
Sbjct: 246 NRK 248


>gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 249

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104
              +YG+H VSA L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELDALGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+                     L   +    L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   + ++ K A GA E +P I+++NL  +L+++   G   +G + 
Sbjct: 122 DAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 262

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 95/262 (36%), Gaps = 11/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              ++  K+++S         +   L L GV  V+ AL + +     L A  + L     
Sbjct: 4   SPANQHVKRIRSLASDRHERRRERMLVLEGVRLVADALESGATLTLTLYA-PDQLQLTPA 62

Query: 84  DANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            A L              PQ +                   L S    A     LL+V+D
Sbjct: 63  GAALLQKLRYLPASYEATPQVVAAASDTVHPQG-----VVALASWPHVAPGKPGLLLVID 117

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA A     ++ +       +  + +SA GA   +   +  +     
Sbjct: 118 AVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPKVVRSAMGAHFRLAMEQDLSWDAIG 177

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +++ S          +++ P          AL++G E  GL    +  AT    + M G 
Sbjct: 178 ERLASVDHVYA-ADPEARMPYYAADWRQPSALLVGNEAHGLSDAARRLATKQIAIPMRGG 236

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LNV+ AA+V L+       
Sbjct: 237 TESLNVAVAASVILFEALRQRT 258


>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 253

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISTSAKDKETAKIIDLCRQSGVVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +            L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       ++  KP+
Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
 gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
          Length = 245

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N ++YG+H V A L   P R I   +       RL    N  +     ++ +  +T+D+ 
Sbjct: 3   NEYIYGIHAVKAVLSREPERFIEAFVLKGRQDDRLLPILNELNVCGVSIQQMTRKTLDEK 62

Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+                 + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  AS-GANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 246

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARLGISIQEMHRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 249

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +  + G + V  AL    P +K+  L +             +     V+ V  + +D++ 
Sbjct: 2   SDIIAGRNAVREALRGTRPIQKVLVLESGHGGSFEEILSLCVKRHVAVERVNKERLDRLS 61

Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+    + +    LD              L++LD + DP NIGA++RSA A  
Sbjct: 62  PDVR-HQGVVAVGSAVAFRDLDEVLEGVAQKGKVPFLLLLDELQDPQNIGALIRSANAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +R S    AV+AK ++GALEH P + ++NL   ++ +   GF  +G   D K 
Sbjct: 121 VDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVTNLVRTMKDLKKRGFWIVGADMDGKD 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     + L++GAEGKG+    +E    +  + M G +++LN S A  + LY    
Sbjct: 181 LYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVRIPMLGQVQSLNASVAGGILLYEITR 240

Query: 279 HFA 281
              
Sbjct: 241 QRI 243


>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 271

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 99/286 (34%), Gaps = 29/286 (10%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +++  ++E++  + + H                   K +   +     + G   V   L 
Sbjct: 1   MLTSLQNEQVKYVVNLH-------------------KRKFREENGEFLIEGWRFVEEGLA 41

Query: 63  NPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   K+F     KN       +A      PV  V  + + K+   E     LA+    
Sbjct: 42  RGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGILAVVKQS 101

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             +                 +L++LD V DP N G ILR+A+A     +  T+      +
Sbjct: 102 RWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYN 161

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +S  GA+     I      + + K+       + +       L +      +AL++
Sbjct: 162 LKVLRSTMGAIF-SLNIVTHCQPEEILKVCRSHKIPVFVGDVEGTDLYETHFAQPMALVV 220

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G EG G     Q        + M   +++LNV+ A  + LY  +  
Sbjct: 221 GNEGNGPSAAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRR 266


>gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
 gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
          Length = 247

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+                 + A   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 254

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 5/256 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           +  +       +   +                   +     LL   D 
Sbjct: 61  LAQLGLAYDESKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFAFSYGKWVLL---DD 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+         
Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +       L   + K L       ++ALI+G E  G+ P+    A    ++ + G  
Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + AA + +Y  
Sbjct: 238 ESLNAAVAAGIMIYHF 253


>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
          Length = 260

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 102/257 (39%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++ + K      + +++  +       GV     A+ + +  I    A++ A  +   
Sbjct: 6   SKDNSNIKNAVKLRKSAKYRRESGLFIAEGVRICMDAMLSKAH-IDTFFASEKASEKYAD 64

Query: 84  DANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D +    +      V  +  +++   E+    L +  A   +   D ++     + LD++
Sbjct: 65  DFSNLQKYSDKTFIVSDKIFNQMCDTESPQGFLCVIKALDKTACFDKIKTGDKFLALDNL 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+A A +  GI+ +       S  + + + GA+  +P++    +      
Sbjct: 125 QDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFVVSDTI-SGYLN 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            HS       + S S   +          + +G EG GL+ +T         + M G  +
Sbjct: 184 AHSELESYAAVVSASADKITTTPFVSPCIVAVGNEGNGLKEETISACKHKITIPMEGRAE 243

Query: 262 ALNVSNAAAVALYITQN 278
           +LN + AA++ ++    
Sbjct: 244 SLNAAVAASIIMWEMMK 260


>gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
 gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   +      L   LD +  + LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12J]
          Length = 250

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   +      L   LD +  + LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 254

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 5/256 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           +  +       +   +                   +     LL   D 
Sbjct: 61  LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL---DD 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+         
Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +       L   + K L       ++ALI+G E  G+ P+ +  A    ++ + G  
Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 237

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + AA + +Y  
Sbjct: 238 ESLNAAVAAGIMIYHF 253


>gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii
           B565]
          Length = 249

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
              +YG+H V+A L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVTALLERTPERFIEVWALKGRDDDRLQPLLTELESLGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+                     L A ++   L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   + ++ K A GA E +P I+++NL   L+++   G   +G + 
Sbjct: 122 DAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           N1-067]
          Length = 251

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +     +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V    VHQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
          Length = 245

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++      ++   +   +        V  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAEKAGRRVHPVPMERLDGLSR 65

Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                         + A  +   LD +    LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G   +G    +   + +
Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGVWLVGTDDQATDSMHK 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 276

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 6/267 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  ++++Q+         + +   + GV  ++ A+ +       L      L+
Sbjct: 3   VQRISTRNARFQQLQTLLNNRTKRGRAKEFLVQGVRPITMAVEHGWTVRSLLYDASRPLS 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVL 138
           R   D           + PQ + ++  K      +           +   VR+  L +V 
Sbjct: 63  RWAEDLLRGVGAERVAMEPQLLAELSEKADGAAEVLAVVEMAPDSLSRIKVRDDFLGLVF 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193
           D    P NIG+I+RSA AF   G+I T   +        ++++G+               
Sbjct: 123 DRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSQSHHEV 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 ++        +G   D    + +      + L++G E  GL    +E    +  
Sbjct: 183 MEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSAWRELCDQVIS 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G   +LN SNAA+V LY  +   
Sbjct: 243 IPMTGSASSLNASNAASVVLYEARRQR 269


>gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +       +   +    +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWV-- 63

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P            LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 254

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 5/256 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           +  +           +                   +     LL   D 
Sbjct: 61  LAQLGLAYDEGKLIKISQSVASHFSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL---DD 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+         
Sbjct: 118 LADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDAIAS 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +       L   + K L       ++ALI+G E  G+ P+    A    ++ + G  
Sbjct: 178 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRA 237

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + AA + +Y  
Sbjct: 238 ESLNAAVAAGIMIYHF 253


>gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1]
          Length = 246

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   V  V  + +D++   +
Sbjct: 8   IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVHFVEKERLDQLSETK 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A+  A   +   D ++          L +LD++ DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVIAVAAAYEYAEVEDMLKLAEEKGEPPFLFILDNIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GA+ + P  +++NLT  ++++   G   +         +  
Sbjct: 128 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCA-DMDGTCMYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 I L++G+EG+G+    +E    +A + M G I +LN S AA V  Y       +
Sbjct: 187 LDLKGPIGLVIGSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRMR 246


>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
 gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
          Length = 254

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
 gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
          Length = 265

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
 gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G + V  A+ N       L++   K    +            ++ V    +D++   
Sbjct: 3   IIEGRNPVIEAIKNDRHIEKLLISNSSKEGSIKKIIAMAKEKKIVIQYVDRHKLDEMSTS 62

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+    +  +   ++              +++LD + DPHN+G+I+R+A A    
Sbjct: 63  HA-HQGVIATISDYIYKDIEEVVREVKEKGEDPFIIILDEITDPHNLGSIIRTADAVGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  KR S   + V+AK+++GA+E++P  +++N+ + ++ +   G              
Sbjct: 122 AVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTNIVNTIKMLKEEGLWIAAA-DMDGGVF 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++     + L++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 181 YKQDLTGPLGLVVGSEGFGISRLVKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQR 240

Query: 281 A 281
            
Sbjct: 241 T 241


>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK----IFQLLATKNALARL 81
           ++   K +    ++ R+  + + + + G  ++  A +N        I +          L
Sbjct: 7   SNPRIKHIVKLRER-RYRDKEQTMIIEGFRSIYRAADNGVYPKELYICRDFFLGKNEDEL 65

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      +         KI  ++     LAL            + +  LL+V   +
Sbjct: 66  IQKLQDEGGTQIFETEQNVFKKISYRDRPEGLLALTGYFRKQVDDLELSDPPLLVVAQSI 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+G I+RSA     DG+I               +AS  +     I  +   D +  
Sbjct: 126 EKPGNLGTIIRSADGTGADGLILC-DKCTDLFNPNVITASTGMCFSLPIAEAASQDTINY 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  +  + K          IA+I+GAE  GL  +  + ++    + M G   
Sbjct: 185 LKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSINVKIPMLGKAD 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A  + LY      
Sbjct: 245 SLNVATATTLLLYEAVRQR 263


>gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 253

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
           CGA009]
 gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
 gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
 gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
          Length = 275

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 114/258 (44%), Positives = 158/258 (61%), Gaps = 1/258 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  +++     R   +   F +  R       + LYG HTV+AAL NP RK  +L  T+N
Sbjct: 7   NPRFSRRDGPPRGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTEN 66

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL  + N+      + V P  ID+ +G +AVHQG+  E  PL  P +D +    +++
Sbjct: 67  AARRLAEE-NIDTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL 
Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S+    L        +AL+LGAEGKGLR  T++T  ++A L M
Sbjct: 186 RALTELNDRGFLTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDM 245

Query: 257 PGIIKALNVSNAAAVALY 274
           PG IK+LNVSNAAA+ALY
Sbjct: 246 PGEIKSLNVSNAAALALY 263


>gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
 gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
          Length = 246

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  MT--RKNHQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S S +A   K+++GAL  +P  R  NL + LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA V +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
 gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 251

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     L G H V  A
Sbjct: 1   MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + + +  + +L+  +       W+       PV  V    +  I   E      A     
Sbjct: 42  IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMRAISSTETPQGIAA--VCR 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            LS  L+ V+ + L+   D V DP N+G ++R+A +   D +I  +  +   +  + ++ 
Sbjct: 96  QLSTELEGVKTALLI---DAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P ++       + +    G    G + ++        ++   AL++G EG G+
Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           RP      T   ++ + G  ++LNV+ AA + LY  Q
Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp.
           W3-18-1]
 gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
 gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens CN-32]
          Length = 246

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +        +  D        ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 253

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 6/251 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++            K +    + L      S + +  +     +VLD++ DP 
Sbjct: 66  KLKDDKVIQITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKW----VVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++   L        + 
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILAAISSFKENG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   + K L   I   ++AL++G E  G      ETA    ++ + G  ++LN 
Sbjct: 182 IPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALYIT 276
           + AA + +Y  
Sbjct: 242 AVAAGIMIYHF 252


>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
          Length = 282

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIV 105
           F+YGV+ V AAL     ++ +L   +  L        L         V+ V  + +  + 
Sbjct: 36  FVYGVNPVLAALRARPDEVERLFLVEGQLGARAAGELLSRAREFGIRVEKVTRERLGTLA 95

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +  VHQG+ +E        L+ +           L++VLD + DPHN+GAI+RSA A  
Sbjct: 96  -EGGVHQGVVVELRGFKYAELEDLLEAAKALGQPPLVVVLDGIQDPHNLGAIIRSADALG 154

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  K  +   +  +AK+++GA+EH    R+ N++ AL+++   G        D+K+
Sbjct: 155 AHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARVVNISRALEELKEAGLWVAAADVDAKE 214

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+     +  +AL++GAEG G+R    +       + M G + +LN S +A + LY    
Sbjct: 215 PMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRLRIPMAGQVGSLNASVSAGILLYEVAR 274

Query: 279 HF 280
             
Sbjct: 275 QR 276


>gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
 gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
          Length = 247

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V A L         L       +   R            V  V    +D++ G
Sbjct: 2   LLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMAG 61

Query: 107 KEAVHQGLALETAPLLSP--------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               HQG+  +                L+       L++LD V DP N+GA LRSA    
Sbjct: 62  -GKRHQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  K ++   + V   +ASGA E +PYI ++NL   ++++   GF+  GL+ ++  
Sbjct: 121 VDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEADA 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      +A+++GAE KGLR   +E   ++  + M G + +LNVS A  V LY    
Sbjct: 181 DLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLYEVLR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 247

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G H V+A L + +  + ++       +   +    A       +       +  IVG 
Sbjct: 6   IFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVGT 65

Query: 108 EAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                 +A       A  L   LDA+    LL+VLD + DPHN+GA LR A       +I
Sbjct: 66  RRHQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHAVI 125

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K L + 
Sbjct: 126 APKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLYEA 185

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +   AL++G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY  +    
Sbjct: 186 DFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQRI 243


>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
 gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
          Length = 274

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWD 84
            +   K+++  +Q ++   Q   L L G H +  AL            A       +  D
Sbjct: 15  QNPLVKQLRQLHQ-TKGRKQQGQLLLEGTHLLEVALAQGKGFNHGCFTAMWQEKNPVLAD 73

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
             +        V  + + K+         +A  T      +        L++  + + DP
Sbjct: 74  RLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTMDQFWRSPPPHARLGLVL--ERLQDP 131

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A A   +GI  T       S  + +S++G+   +P  ++ +L   L+K H+
Sbjct: 132 GNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLPQQQLQSLPPLLEKFHT 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q I     + + L +        +I G+EG+GL     E  T    +     +++LN
Sbjct: 192 QGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTTHQVAIPQAPQVESLN 251

Query: 265 VSNAAAVALYITQNH 279
           V+ A  V LY  +  
Sbjct: 252 VAIAVGVMLYEARRQ 266


>gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
 gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
          Length = 251

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H VSA L +    + ++      K+A  R            +       +D +VG
Sbjct: 12  LIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQSEGDKLDALVG 71

Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                    +  A      L+  LD++  + L++VLD V DPHN+GA LR A A     +
Sbjct: 72  TRRHQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACLRVADAAGAHAV 131

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  +   +A   K ASGA + +PYI ++NL  AL++M   G   +G + +++K L  
Sbjct: 132 VAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVGAAGEAEKTLYG 191

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ + L+  +   
Sbjct: 192 VDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQR 249


>gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
 gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
          Length = 270

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 15/271 (5%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNA 77
             +  R +  Y +     +          L + G + V  A  +     K+F L   ++ 
Sbjct: 2   KEQRMRENSRYHE----AENHTGQDNSHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDG 57

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130
             R        H   +  V  + + +I  +   HQG+    A     T+D +        
Sbjct: 58  PVRTIVREAKKHDALLNFVTKERLSQIS-ETGKHQGVVAYAAAYEYSTVDDMLALAEERG 116

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               +++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  
Sbjct: 117 EDPFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVA 176

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +++NL   ++++   G   +       +P+        I L++G EG+G+    +E    
Sbjct: 177 KVTNLVKTMEELKEKGLWFVCA-DMDGEPMYHLNLTGPIGLVIGNEGEGVSRLVKENCDF 235

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +A + M G I +LN S AA V  Y       
Sbjct: 236 VAGIPMKGQINSLNASVAAGVLAYEIVRQRI 266


>gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
          Length = 243

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG + V   +     ++ ++    N      +        H   +       + ++ G
Sbjct: 4   VVYGRNAVLELIRTRPEEVEKIYFQFNTEQSKLKEILVTAKRHNISIGKARNNRLVELSG 63

Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +    LD        + QL+++LD + DPHN+GAI+R+A A + D 
Sbjct: 64  TDK-HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +A +AK+++GAL HI   ++ NL+  ++++   GF   GL  D +K   
Sbjct: 123 VIIPHDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   ND  A+++G+EGKG+R   ++   ++  L + G +++LN S +AA+ LY      
Sbjct: 183 EIDFNDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQR 241


>gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 256

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G   V  AL +  R I +L+  K A     R           P+  +    +D+ V 
Sbjct: 12  LLAGRQPVMEALKSG-RAINKLVVAKGAREGSIREILGMARDRGIPITELERTVLDREVR 70

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    AP+    ++ +            +++LD + DPHNIGA+LR+A     
Sbjct: 71  H---HQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAGA 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  KR   + ++ +AK+++GA+E++P  R++NL   + ++   G   IG + D+ +P
Sbjct: 128 HGVIIPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPRP 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++     + LI+G+EGKG+ P  +E    +  + M G + +LN S A A+ +Y     
Sbjct: 188 YFRQDFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVRQ 247

Query: 280 F 280
            
Sbjct: 248 L 248


>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 284

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 102/275 (37%), Gaps = 11/275 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            K+ ++  +          ++   K +++ +QK ++ ++       G+  V  ALN    
Sbjct: 4   PKTGRVKEITSL-------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALNLGWT 55

Query: 67  KIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               + +          +     + +   V     + ++ +  ++     + +      S
Sbjct: 56  IQTLIFSKSEIGNATIENTAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWQS 115

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +   +   + + LD V DP N+G I+R+A A S  G+I     +   S    ++  G+
Sbjct: 116 LEMITGQAKDVYIALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPETVRATMGS 175

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  IP  R              G         S    + ++KN  I L++G E +GL   
Sbjct: 176 IFSIPLYRFDESAFLNWSSCFKGMIVGTHLKGSLDYRKLDLKNGPIILLMGNEKQGLSDI 235

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +A +   G   +LN++ A AV LY  + 
Sbjct: 236 LTNRCDKLARIPQSGRADSLNLAIATAVMLYEIRR 270


>gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 243

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ LI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNT-GGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           Langeland]
 gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           230613]
          Length = 259

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +KN  I + +G EG G+       +     + MPG  
Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKN-NIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       +
Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259


>gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 242

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL      K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L           + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 247

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            +          S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRI 244


>gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
 gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
          Length = 247

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGK 107
            + G ++V+ AL          +  K     L            PV+ V  + ++++   
Sbjct: 5   IIAGRNSVTEALKAGRSVTKIYMTAKKEAPPLARIRTLAKERKIPVEFVDNRAMERLAPG 64

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQ +    A +    LD              L++ D + D HN+GAI+R+A      
Sbjct: 65  IR-HQDVVALAAAVDFADLDDVLAKVREQGEMPFLVLADGIEDVHNLGAIIRTAECAGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R+S   +  +AK+++GA+E++P +RI N+T  L+++   GF  +G     ++  
Sbjct: 124 AILVPQRHSAPINETVAKTSAGAVEYMPVVRIGNVTTTLKQLKKQGFWVLGADMVGEENY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  + L++G+EGKG+    ++    +  + M G I +LN S AAA+ +Y      
Sbjct: 184 YSLSADMPLVLVIGSEGKGISRLVKDNCDVLVRIPMFGRINSLNASVAAALLMYEVARKR 243

Query: 281 AK 282
            +
Sbjct: 244 HR 245


>gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
 gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
          Length = 242

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
 gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
          Length = 246

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++   K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNKSQG 64

Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       +   LL++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I  K  S   ++   K A GA E +P IR++N      +         +G + ++   + 
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 DAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQ 242


>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
 gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
          Length = 248

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +   +YG++ V  AL   SR+I +L     + +               PV+      ++
Sbjct: 2   SKEEIIYGLNPVMEALR-GSREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLN 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++ G E  HQG+AL+  P     LD            L++VLD V DPHN+GA++RSA  
Sbjct: 61  RLCGTE-HHQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              + ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    +
Sbjct: 120 AGANAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L Q+     +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+  
Sbjct: 180 RHTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
 gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
          Length = 246

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 9/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  ++YG+  V  A+       K+F     +  L +   +           VP + +D+
Sbjct: 2   EKQTYIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  +   HQG+    +P+    LD         + + L ++LD ++D  N GAI+R+A  
Sbjct: 62  LAKQHNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASC 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  K+ +   +A   K+++GA   +P I++ +L DA+  + + G Q I  +  +
Sbjct: 122 TGVDGIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  L +       A+++G+E  G+ P   + A + A L M G I +LNVS A  V LY  
Sbjct: 182 KNDLYEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEA 241

Query: 277 QNHFA 281
                
Sbjct: 242 VRQRK 246


>gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 246

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHP--FPVKTVPPQTIDK 103
            +  ++GV  V  A+      I ++L  K+  + L  +   +      PV+ VP + I++
Sbjct: 4   NSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  VT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  +L + LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC
           3083-94]
          Length = 243

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A       +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +   L++LD V DPHN+GA LRSA A   
Sbjct: 62  SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 FA 281
            +
Sbjct: 242 RS 243


>gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12D]
          Length = 250

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   +      L   LD +  + LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IA+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 242

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        +        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
          Length = 242

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL      K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L       A   + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 242

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TA-GAVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 253

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL  AL+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40]
 gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40]
          Length = 248

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 9/243 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +   ++G+H V + L    ++I ++      ++A  +    A       V     +++D 
Sbjct: 3   KQEIIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS 62

Query: 104 IVGKEAVHQGLAL------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +         LA        T   L P ++A+    L++VLD V DPHN+GA LRSA A 
Sbjct: 63  VSADGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADAA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   + V  K A GA +++P I ++NL   L+KM   G    G + D+ 
Sbjct: 123 GAHALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDTD 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +          +++GAEG G+R  T ET   +  + M G + +LNVS A  V L+   
Sbjct: 183 KSIYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEVV 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 253

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 25/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   +                  +   K  +    + +   +     + G H V  A
Sbjct: 1   MKRIESTQ------------------NALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +   +I Q++        L W  +      V     + I      E  +         
Sbjct: 43  LKH-KDQIVQIIVRDGVDLPLLWAIDEVVLVHVNEAVSKEIA-----ETENSQGVFAHCK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D   + + ++++D V DP NIG ++R+A A   D ++  K    + +    +SA
Sbjct: 97  QRQISEDEQFDWKKVLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R   + + ++ + + G +  G S D     ++   +D  ALI+G EG G+
Sbjct: 157 QGSHFHIPVVRGDLM-EWVENLQADGIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+          + + G  ++LNV+ A  + LY    
Sbjct: 216 NPQILAKTDQNIIIPILGGAESLNVAVATGILLYAFVK 253


>gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Achromobacter xylosoxidans A8]
          Length = 245

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++      ++   +   +        +  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPDSIKEIYVEASRRDKRMQTFIEQAEKAGCRLHPVPMERLDGLSR 65

Query: 107 KEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +AL     L+      LD +    LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G   +G    +   + Q
Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 242

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        +        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
 gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
          Length = 251

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +       +    +       V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGVQKGVLKQVLASAKDRKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++          +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASIL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
 gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
          Length = 247

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   ++G+H V + L    ++I +L   K+   +           H   V  V  Q ++ 
Sbjct: 2   KTDVIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAEAHGVRVSLVNRQQLES 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             G +  HQG+     P  +            +    L++VLD V DPHN+GA +RSA A
Sbjct: 62  AAG-DGNHQGVIAYAKPGKALDEKGLLDLIAQMEEDPLILVLDGVTDPHNLGACMRSADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S   +    K A GA E +P + ++NL  AL K+   G    G + ++
Sbjct: 121 AGVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +          +++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+  
Sbjct: 181 DADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEV 240

Query: 277 QNHFA 281
                
Sbjct: 241 LRQRN 245


>gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
 gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
          Length = 249

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEMIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPLVHEIEALGVVVQVANRQWMDSQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P           L    +S  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 142/268 (52%), Positives = 187/268 (69%), Gaps = 13/268 (4%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSA 59
            S +D+HYA LRR HRD ++ +      R   +             P+ + LYG+HTV A
Sbjct: 9   KSARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLYGLHTVRA 68

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP R+I +L  T+NA ARLD   +   PFPV+TV PQ +D+I+G +A+HQG+ LET 
Sbjct: 69  ALDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQGVMLETR 128

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKS
Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+ISNL D + ++H+ GF TIGL S+  +PLE     DKIAL+LG+EGKG
Sbjct: 189 ASGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT++T  ++A L MPG IK+LNVSN
Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435]
 gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 249

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILQNAKEQKLIVQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S + +  +AK+++GA++H+P +R++NL   + ++   G+   G  +D+
Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 YRKR 242


>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 249

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 29/278 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I                     N+   K+ +    K +   +       G H    A
Sbjct: 1   MKHIQSA------------------NNPQIKQWRKLLAK-KERDKTGMFLAEGYHLAEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L     K  +L+ ++NA   + WD       PV  V  + I  +   E     +A+    
Sbjct: 42  LK--GEKAIELIISENAELPVRWDY---GELPVTMVTDEIIKSLSDTETPQGVIAVCKEE 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               ++         +++D V DP N+G ++R+A A   D +I  K  +   +  + +SA
Sbjct: 97  KTPASVK----GSTFLLIDAVQDPGNLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSA 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P IR S      +              +      +     + AL++G EG G+
Sbjct: 153 QGSHFHLPIIRGSLNEWMDRLEEEEIPVYGTALENGSPYK-ETHPAGRFALLVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+         ++ + G  ++LNV+ AA + LY  +N
Sbjct: 212 SPELLARTDKNLYIPIYGKSESLNVAVAAGILLYYLKN 249


>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 247

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 8/243 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K    +      +        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDNK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              E     +A   A  +    D        ++  L+VLD + DPHN+GA LRSA A   
Sbjct: 63  AKDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++   
Sbjct: 123 HAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDTH 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 183 VFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLRQ 242

Query: 280 FAK 282
            A+
Sbjct: 243 RAE 245


>gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 251

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +     +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V    VHQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB]
 gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 243

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L +    + ++L      +A AR            V     + +D +  
Sbjct: 5   LIYGFHAITAKLRHDPGAVKEILIDASRHDARARDLLGHAELQGINVVACDGKRLDGMA- 63

Query: 107 KEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   LD +     L+VLD + DP N+GA LR A A     
Sbjct: 64  PGARHQGVVARIEGGRKVAHLDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V AK+A GA E +PY+ ++NL   L+++       IG + +++  L 
Sbjct: 124 VIAPKDRAVGLTDVAAKTACGAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A +LGAEG+G+R  T+E    +  + M G +++LNVS AA V L+  +   
Sbjct: 184 AAEWPKATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRRL 242


>gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 242

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E VHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TDGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
 gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
          Length = 251

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 17/248 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H V + L    + + +L   +    +      +       P+     + +D +V 
Sbjct: 3   YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQNQGVPMARESRKDLDDMVK 62

Query: 107 KEA----------VHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILR 152
                           G   +        L    D   +  L++VLD V DPHN+GA LR
Sbjct: 63  GRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLGACLR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++  K  S   S  + K A GA E +P++R++N++  L  +        G 
Sbjct: 123 SADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVWIFGA 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + +++K +        +AL++GAEG GLR  T+E    +  L M G + +LNVS A  V 
Sbjct: 183 AGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATGVC 242

Query: 273 LYITQNHF 280
           L+      
Sbjct: 243 LFEVIRQR 250


>gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
           065]
          Length = 259

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  +KN  I + +G EG G+       +     + MPG  
Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMKN-NIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       +
Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259


>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
 gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
          Length = 260

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V A L+        L+       R   
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPAQCLV--SERHIRHPE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A +       TV     +       V  G+ L                   ++LD + D
Sbjct: 64  VAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDADCVILDGIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++ 
Sbjct: 124 AGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHSRLQ 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +K+ +     N  +  + G EG G+  +     T+   +  PG +++L
Sbjct: 184 VPL---LATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGMESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAAV L+      
Sbjct: 241 NVAAAAAVCLFEAVRQR 257


>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
 gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
          Length = 258

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++      +R+ ++     L G H + A L+        LL           
Sbjct: 6   SRDNPFYKELVKLTASTRNRNKAGQTLLDGAHLLKAYLDAGYTPRHILLNAAALQDAEIT 65

Query: 84  DAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    PV  +  +   ++  +     G+        +  +     ++  ++L+ V 
Sbjct: 66  SLRQRITGAPVTQLDDKLFAELS-ELKTPTGILALIDLPPAKIV----TARFALLLEAVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G++LRSA A  CD +  +   + +      K    A+     + I    D  +  
Sbjct: 121 DPGNLGSMLRSAAAAGCDAVFLSPACADAW---SPKVLRAAMGGHFCLAIYEQQDLFKVA 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             +  + +  +  +   L        IA ++G EG GL P+ +  AT    + MPG +++
Sbjct: 178 QGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALATHPVTIPMPGAVES 237

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + A A+ L+      
Sbjct: 238 LNAAAATAICLFEAVRQR 255


>gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
 gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
          Length = 250

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           + ENL + G + V  A  +     K+F L   ++   R        H   +  V  + +D
Sbjct: 6   KVENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLD 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  +   HQG+    A      ++ +            L++LD++ DPHN+GAI+R+A 
Sbjct: 66  QIS-ETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTAN 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +     
Sbjct: 125 LAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCA-DM 183

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + + +      I +++G EG G+    +E    +A + M G I +LN S AA V  Y 
Sbjct: 184 GGESMYRLNLTGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYE 243

Query: 276 TQNHF 280
                
Sbjct: 244 IVRQR 248


>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 251

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     L G H V  A
Sbjct: 1   MKRIESPKNARVKHWKKLLTK-------------------KGREETGCFLLEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + + +  + +L+  +       WD +     PV  V    +  I   E      A+    
Sbjct: 42  VKSQA-PLVELIVDERTTIPPGWDVS---DVPVVIVTETVMKAISSTETPQGIAAICRQR 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T       +  +++D V DP N+G ++R+A A   D +I  +  +   +  + ++ 
Sbjct: 98  PHELT-----GVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P ++        +              ++         +   AL++G EG G+
Sbjct: 153 QGSLFHLPVVKGDVAEWITRLKEQGVPVYGTALENAVDYRAIPQ-SSSFALLVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +  E  T   ++ + G  ++LNV+ AA + LY  Q
Sbjct: 212 RRELLEMTTENVYIPIYGQAESLNVAVAAGILLYSLQ 248


>gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 274

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 128/274 (46%), Positives = 170/274 (62%), Gaps = 5/274 (1%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSR 66
            EKI   K  HY +L+R   D K      +  +     +   ++LYG+H+V AAL NP R
Sbjct: 2   REKIS--KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRHGTIYLYGLHSVHAALKNPKR 59

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               L  T NAL RL+       P P+    P+ +D  VG +AVHQG+ LET PL    L
Sbjct: 60  VFEHLYITPNALKRLN-IPESDLPCPITLCLPKQLDSFVGNDAVHQGIVLETEPLKPCQL 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVAF  + +ITT R+SP ES VLAK+ASGALE 
Sbjct: 119 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAASGALEM 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL + LQ++H  GF + GL S+   PLE  +  +KIAL+LGAEGKGLR KT+E
Sbjct: 179 IHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLRKKTRE 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++  L MPG IK+LNVSNAA +ALY    + 
Sbjct: 239 NVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272


>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
 gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
 gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +  ++     + G H V  A
Sbjct: 1   MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +P      L+  +  +      ++L        +       +   E   Q  A+    
Sbjct: 42  LKSPGIVKEILVKDETRIP-----SDLETGIQCYMLSEDAFSAVTETETPQQIAAVC--- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +  ++ ++++D V DP N+G ++R+A A   D ++     + + +    +SA
Sbjct: 94  --HMPEEKLATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R +  +   +              +     E    ++  ALI+G EG G+
Sbjct: 152 QGSHFHIPVVRRNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQ-SESFALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 211 DAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
 gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
          Length = 264

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81
            ++++  K++ S  Q+ ++  +     + G+ ++   AA+      + +    ++     
Sbjct: 6   SKDNKTIKRIISLGQR-KNRQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKHVLD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D +     P         DK V      QG+    +           +  L + LD V
Sbjct: 65  LLDLDTVQFVPKFIAQDPIFDK-VDNTVNGQGVVAIVSKPKYDMESIHIDDGLYITLDGV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+AVA    GI   K      +    +S   AL  IP      L+     
Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSLLHDM 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +      T   + +   P        +  L+LG EG G+ P+     T+   + M G ++
Sbjct: 184 VTESNMTTYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS AAA+ +Y  Q   
Sbjct: 244 SLNVSVAAALCMYKVQEQL 262


>gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 273

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 7/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +     + R  +Q       G   +S AL        ++    +     + DA
Sbjct: 11  QNPRVKNLVKLRDR-RPRNQQGLFIAEGYRAISRALEKDVVP-TEIYFCPDCFLGDNEDA 68

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            L         +  +     +K+  ++     LA+      +     + +   L++++ +
Sbjct: 69  LLAQAQAAGATLFELSKHAFEKVAYRDRPEGLLAVIKQWNHTLDDLQLSDPPFLLIVEAI 128

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+G ILRSA A   D +I             A  +S  +        ++  + ++ 
Sbjct: 129 EKPGNLGTILRSADAAGVDAVICC-DSVTDLFNPNAVRSSTGVLFSMPTVTASSDEVIKW 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G +TI  +  +            +A+++G+E  GL  K      +   + M G   
Sbjct: 188 IRQKGIRTIATTPHTDILYTDTDLRGPLAIVMGSEQFGLSEKWLSACDTKVLIPMAGQAD 247

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A  + L+      
Sbjct: 248 SLNVAMATLITLFEAVRQR 266


>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
          Length = 257

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 101/259 (38%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +N+  +K+++   +K ++  +     + G+  V  A+ +       +          D 
Sbjct: 6   SKNNNLFKEIKRLKEK-KYRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDL 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  +    + ++   E     + +             ++ +L++++D V D
Sbjct: 65  FLKINENIKLIQMNEALLKQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    GI+ TK      +    +S  G++ +IP +   +L        
Sbjct: 120 PGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKK 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +      K    +E    K+ + +G EG G+  +  + A     + MPG  ++L
Sbjct: 180 EGYKLVVSS-LQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESL 238

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ A ++ +Y       K
Sbjct: 239 NVAVATSIMIYEKIRQSFK 257


>gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIELCRQSGVVVKFVDKNKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+            D           +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAQEFEYCDTDDILFEARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAIEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
          Length = 258

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 13/251 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPP 98
              + +   L G + V  AL    R +  +L  K       R   +        +K V  
Sbjct: 5   KREKRKEDVLVGRNAVFEALRAG-RPVDSVLIAKGNSGGPVRRIVELCRERGVVIKDVSS 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             +D I G  + HQG+A   A                      L++ D +NDPHN+GAI+
Sbjct: 64  VKLDAICGGMS-HQGVAAMAAAHEYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAII 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR +   +A + K+ASGALE+   +   +   A  +        + 
Sbjct: 123 RTAECCGAHGVIIPKRGAVGLTAAVDKAASGALEY-MPVARVSNLAATVEELKKEGVWVY 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +    +P  +   +   A+I+G+EGKG+    +E    +  + M G I +LN S AA +
Sbjct: 182 GTDMDGQPFYETDFSGGAAVIIGSEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGI 241

Query: 272 ALYITQNHFAK 282
            LY       +
Sbjct: 242 VLYEAAKTRIR 252


>gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali
           symbiont]
          Length = 244

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQ 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P  +        L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K ASGA E++P IR++NL   ++ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      + L++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
 gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
          Length = 279

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 114/300 (38%), Gaps = 45/300 (15%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K +++I                  K ++S  +K     +     + G+  V  A
Sbjct: 1   MEIISSKDNKRI------------------KYIRSLLEKGNIRKKNHQFVVEGIKLVDEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDW------------DANL----PHPFPVKTVPPQTIDKI 104
           L     K+ +++  ++    L              D N+         +  V       +
Sbjct: 43  LEYG--KVLEVVCAESLYNELISGDLSGNRLLAENDKNITNYVKKGSSLLVVSDTVFKSM 100

Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             +    QG+           LD               L+VL+   DP N+G I+R+A A
Sbjct: 101 S-ETKTPQGILAVAEMPDYRLLDKGFLEQAYTKNGKIKLLVLEDTADPGNLGTIMRTAEA 159

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K      +  + +S  G++  +P+  + +L + ++++   G          
Sbjct: 160 AGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVEDLKETIKELKKSGISFYATHLKG 219

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K  +    + + A+I+G E +GL  +  + A +   + M G +++LN + AAA+ +Y  
Sbjct: 220 EKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279


>gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
 gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   A      L   LD +    LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 280

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 106/272 (38%), Gaps = 13/272 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+  +          ++   K +++ N+K ++ ++       G+  V  ALN     I  
Sbjct: 8   KVKEITSL-------SNPIIKYLKALNKK-KNRNRESIFMAEGLKLVIDALNLGWT-IHT 58

Query: 71  LLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L+ +KN+L+    +      + +   V     + ++ I  ++     + +      S   
Sbjct: 59  LIVSKNSLSNSIIENTAANAIANGGSVIKASQKVLESITHRDNPQTVIGIFKQQWHSIEK 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              +   + + LD V DP N+G I+R+A A    GII     +   S    ++  G++  
Sbjct: 119 IIRQIDDVYIALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFS 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R +  T      H  G         S      + KN  I L++G E +GL      
Sbjct: 179 VPLYRCNESTFLNWSTHFKGMIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +A +   G   +LN++ A A+ LY  + 
Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLYEIRR 270


>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 282

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 102/271 (37%), Gaps = 11/271 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+  +          ++   K +++ N+K ++ ++       G+  V  A N        
Sbjct: 8   KVKEITSL-------SNPIIKDLKALNKK-KNRNREGIFMAEGLKLVIDAFNLGWTIHTL 59

Query: 71  LLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +++  +    +  +     + +   V  V  + ++ I  ++     + +      S    
Sbjct: 60  IVSRNSLRNSIIENTAANTIANGGSVIKVSQKVLESITHRDNPQTVVGIFKQQWHSIEKI 119

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   + + LD V DP N+G I+R+A A    GI+     +   S    ++  G++  I
Sbjct: 120 IRRVDDVYIALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSI 179

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R +  T      H  G                + KN  I L++G E +GL       
Sbjct: 180 PLYRCNESTFLNWSTHFRGMIVGTHLKGPVDYRTIDFKNGPIILLMGNEQQGLSDVLVNH 239

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++A +   G   +LN++ A A+ LY  + 
Sbjct: 240 CNNLARIPQCGHADSLNLAVATAIMLYEIRR 270


>gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
 gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
          Length = 245

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 7/243 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
                L G H V+A +      I ++      K++  R   +           V  Q +D
Sbjct: 2   SNTQILAGFHAVNARIKLAPDSIKEIYFESNRKDSRMRTLLERATELKIKTYAVDSQRLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +         LA+ +   L+ +    LD +    LL++LD V DPHN+GA LR+A A  
Sbjct: 62  ALAKGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGACLRTADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   ++ + + A GA + +PYI ++NL   L+ +   G   IG +  ++K
Sbjct: 122 VHAVIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWIIGTTDATEK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +         A ++GAEG G+R  T E+   +  + M G +++LNVS A+AV LY +  
Sbjct: 182 SVYDIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 247

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  +YG H++ A L +   +  ++   +N    RL             +     Q +D  
Sbjct: 2   SDIIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSAGLSILFTSRQYLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G       +A   +           L    ++  ++VLD + DPHN+GA LRSA A   
Sbjct: 62  TGGGVHQGIMAKVCSAHQYQENELPALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +A + K+ASGA E+IP IR++NL   L+ +  +    IG + ++KK 
Sbjct: 122 QIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGTAGEAKKT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +      +AL++G+E KGLR  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 182 VYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAVRQ 241

Query: 280 FA 281
             
Sbjct: 242 RN 243


>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           331]
          Length = 270

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N    RL             V  +    ++ +  +
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   + +         L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414]
 gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414]
          Length = 261

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 96/257 (37%), Gaps = 5/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWD 84
            +   K+++  +  ++   + +   L G H +  A       +      +        W+
Sbjct: 6   QNSLVKQIRKLH-STKERHKQQLCLLEGTHLLQEACVVNYPLVTVCCTPEWQTAHPELWE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A   H   V+ V  + +  I       Q   +      +     V  + L++ L+ + DP
Sbjct: 65  AACSHSDRVEIVSKEILAAIA---TTVQPDGVVATAQRAINQTQVPFTGLVLALETIQDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A    G+  +      +S  + ++++G    +      +L   +Q+   
Sbjct: 122 GNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWFRVATAVSQDLKATIQQSQQ 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +     +              ++LG EG GL P     A     + +   +++LN
Sbjct: 182 AGMQVVATLPTANLTYWDVDWRKPSLILLGNEGAGLSPDLASMADKQVKIPLSSGVESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AAA+ +Y  Q    
Sbjct: 242 VAIAAALMMYEAQRQII 258


>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 251

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 106/277 (38%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++   K                        +   +     L G H V  A
Sbjct: 1   MKRIESPKNARVKQWKKLLTK-------------------KGRDETGLFLLEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + + +  + +L+  +       W+       PV  V    +  I   E      A     
Sbjct: 42  IKSNA-PLVELIVDERTAVPPGWNV---TGVPVTIVTEAVMRAISSTETPQGIAA--VCR 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L   L+ V+ + L+   D V DP N+G ++R+A A   D +I  +  +   +  + ++ 
Sbjct: 96  KLPAELEGVKTALLI---DAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P ++       + +    G    G + ++        ++   A+++G EG G+
Sbjct: 153 QGSLFHLPVVKGDLA-QWIARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           RP      T   ++ + G  ++LNV+ AA + LY  Q
Sbjct: 212 RPDLLRLTTENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis
           JLW8]
          Length = 250

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V + L   S  + ++L  ++   A  +   +           V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D               ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   +G + DS   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     N  IAL+LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQ 245

Query: 280 FA 281
            +
Sbjct: 246 RS 247


>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 394

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 109/257 (42%), Gaps = 14/257 (5%)

Query: 35  SFNQKSRHTSQ--PENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90
             N+K +       +   + G + V  AL    P  KIF L   ++   R          
Sbjct: 138 DLNKKKKQEKNMNHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTD 197

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVND 143
             +K V  + ++++  +   HQG+    A     T++               ++LD + D
Sbjct: 198 AILKFVDKERLNQLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIED 255

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A      G+I  K  +   +  +AK+++GA+ + P ++++N+   + ++ 
Sbjct: 256 PHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELK 315

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G           + + ++     I L++G EG G+    +E    ++ + M G I +L
Sbjct: 316 ERGMWFACA-DMDGEVIYRQNLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSL 374

Query: 264 NVSNAAAVALYITQNHF 280
           N S AA V  +      
Sbjct: 375 NASVAAGVLAFEVVRQR 391


>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 16/284 (5%)

Query: 11  KIFSLKD-SHYAKLRRNH---RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KI   +  SH  +  +         ++     +++++ + +N  +YG H V +AL +  R
Sbjct: 21  KIKGKRVLSHPIRTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHPVLSALES-HR 79

Query: 67  KIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            + +L        +            +   +  V P+ +D+I      HQG+A + AP  
Sbjct: 80  NLNRLWITSRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT-NGGNHQGVAAQIAPYT 138

Query: 123 SPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              L+         +  +++V D + DPHN+GAI+R+A A    G++  +R +   ++ +
Sbjct: 139 YTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTV 198

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            K A+GALE+    R+ NL+ AL+++   GF   G ++   +PL          L++G+E
Sbjct: 199 VKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHSVRFTGSTVLVVGSE 258

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+GL   TQ++   +  + + G   +LN S A  +ALY      
Sbjct: 259 GEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQR 302


>gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 245

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++  + 
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKKDTIINYVAKERLDQLS-ET 63

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  + A     +++ +            + +LD++ DPHN+GAI+R+A      G
Sbjct: 64  GAHQGVIAQVAAYEYASVEDILAKAREKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GAL + P  +++NL   + ++   G   +       + + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTNLGHTIDELKEQGMWFVCA-DMGGETMY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  I +++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 183 NLNLTGPIGVVIGNEGEGVSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQR 241


>gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
 gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
          Length = 247

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L      K++     +                 +   P +
Sbjct: 2   KTTKETSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L           + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTPSHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
          Length = 245

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              + G + V  A  +     K++ L   K+                ++ V  + +D++ 
Sbjct: 5   EFTIEGRNAVIEAFRSGKTIDKLYVLDGCKDGPVMTIIREAKKTDTIIRYVDREILDRLS 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            K   HQG+    A      ++ +            + +LD + DPHN+GAI+R+A    
Sbjct: 65  -KTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPHNLGAIIRTANLAG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR +   +A +AK+++GAL + P  +++NL+  ++++   G   +       +
Sbjct: 124 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKEGLWFVCA-DMGGE 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        I L++G EG+G+    +E    +A + M G I +LN S AA V  Y    
Sbjct: 183 TMYNLNLTGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVR 242

Query: 279 HF 280
             
Sbjct: 243 QR 244


>gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
 gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
          Length = 242

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL      K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L       A   + LL++LD + DPHN+G+I+R+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHQWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
             F+ G + V  AL +  R+I ++   ++               +   V+ VP + +D++
Sbjct: 1   MDFIIGKNPVIEALKS-KRQINKIWIAESVQRHSVQPIIQLAKQNGVLVQYVPKKKLDQM 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      +D               ++LD + DPHN+G+I+R+A A 
Sbjct: 60  V--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   G   +G  + +K
Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAK 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 178 EDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVY 237

Query: 278 NHF 280
              
Sbjct: 238 RKR 240


>gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
 gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
          Length = 267

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 104/246 (42%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101
              LYG+H V  A+    R++  +   +   AR D       D        V T     +
Sbjct: 1   MDVLYGLHPVEEAIRAGMRQLDHVSVAREREARRDARLDAVLDLCRAAGIRVNTESRDQL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
            +    +A HQG+           L+            +  + LD V DPHN+GA+LRSA
Sbjct: 61  TRHAKTDA-HQGIVAFLRERKFLALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                DG+I  +R S   SA +AKS++GA EH+   ++ N+T AL+ M       +GL  
Sbjct: 120 DGSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQVVNITRALETMKKHNVWIVGLDE 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                           L+LG+EG GL    + T   +  + M G + +LNVS A AV +Y
Sbjct: 180 RGTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMY 239

Query: 275 ITQNHF 280
                 
Sbjct: 240 EAMRQR 245


>gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
 gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
          Length = 243

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V  A+    + I +L   K A  +L     D  L H    + VP + ++++  
Sbjct: 5   LVFGIRPVVEAIEAGKQ-IEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNRLT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  + +P+    L+ +        + L+++ D V D  N GAI RSA      
Sbjct: 63  -RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I   + +   ++   +S++GAL  IP  R+ ++ + L+ + + G+Q +G +  S+K L
Sbjct: 122 GLIVPLKNAAPVNSEAIRSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKSRKLL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    AL++GAE  G+  +  +       + M G I++LNVS AAAV L+      
Sbjct: 182 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQR 241

Query: 281 A 281
            
Sbjct: 242 I 242


>gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 95/254 (37%), Gaps = 4/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +     ++R           G   VS A   P+ +I  + A     AR +    
Sbjct: 7   NARVKNVIQLQTRARARKDSRQFVAEGFRMVSEA---PADRIVSIYA-SETFARCNSGYM 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                P + V      ++         LA+              ++ L ++++++ DP N
Sbjct: 63  STIQVPYEMVSDNVFAQMSDTRTPQGILAVIKMAEYGIGDIIAHDNGLYVIVENLQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R + A   DGII +       +    +S  G+L  +P++   +    L++M S G
Sbjct: 123 LGTIIRMSEAAGVDGIIMSPNTVDIYNPKTIRSTMGSLYRVPFVYADDFAGTLEQMKSKG 182

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +      +      +       A ++G EG GL        ++   + M G +++LN +
Sbjct: 183 VELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTNICSNRIRIPMAGKVESLNAA 242

Query: 267 NAAAVALYITQNHF 280
            AA+V  +      
Sbjct: 243 IAASVLTFEAARQR 256


>gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
 gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
          Length = 242

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNT-SGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 248

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +  ++     + G H V  A
Sbjct: 1   MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +P      L+  +  +      ++L        +       +   E   Q  A+    
Sbjct: 42  LKSPGIVKEILVKDETKIP-----SDLETGIQCYMLSEDAFSAVTETETPQQIAAVC--- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +  ++ ++++D V DP N+G ++R+A A   D ++     + + +    +SA
Sbjct: 94  --HMPEEKLATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R +  +   +              +     E    ++  ALI+G EG G+
Sbjct: 152 QGSHFHIPVVRRNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQ-SESFALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 211 DAALLEKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
 gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 14/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           + ++YG H V A L    R I  L    N   +               V+ V    +D++
Sbjct: 2   SDWVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVAVERVSGAALDEV 61

Query: 105 VGKEAVHQGLALETAPLLS---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                 HQG+A++     +           L   ++S LL++LD V DPHN+GA LR+A 
Sbjct: 62  AA--GRHQGIAVQVKSGATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACLRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  +  +   S V  K A GA + +P++R++NL   L ++ + G   IG S  
Sbjct: 120 AAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIGTSDK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L ++  +  +A+++GAEG G+R  T+E    +  L M G + +LNVS A  + L+ 
Sbjct: 180 ASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFE 239

Query: 276 TQNHF 280
                
Sbjct: 240 AVRQR 244


>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 263

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 93/256 (36%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNYDRFKE 62

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V       +   +     LA+   P          +   L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDAVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYITQNHF 280
            + +A + +Y      
Sbjct: 243 AAISATLLMYECNRQR 258


>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
 gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
          Length = 261

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 105/274 (38%), Gaps = 26/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI   K+E++ + K                     Q  R   +     + G H +  A
Sbjct: 7   MELILSTKNERVKNWKKL-------------------QSRRGRQKAGAYLIEGFHLIEEA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N +  I +++ ++  +     + +      + T     I K++ +    QG+      
Sbjct: 48  LKNHA-IILEIMISEEVVVGDIPEFDEAKQVEIST----EIAKLLSETETSQGIFAVVKK 102

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +    LD    ++  + LD+V DP N+G ++R+A A    G++  K      ++ + +S 
Sbjct: 103 IDQ--LDKPILTKPFLFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSM 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  +                      ++      +        L++G EG G+
Sbjct: 161 QGSHFHLPVYQGDLNEWFDLFFELEFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNGM 220

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +  T   ++ + G  ++LNV+ AA + ++
Sbjct: 221 AAELLKRTTKNLYIPIVGQAESLNVAVAAGILMF 254


>gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
 gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
          Length = 242

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 64  -GAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V+AK+A+GA+EH+P  R++NL+  L K+   GF   G   +     
Sbjct: 123 GVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    + KIALI+G EG+G+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNT-SGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241


>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
 gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
          Length = 248

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
               + G + V  AL +     KI      ++ L R            V+ V    +D +
Sbjct: 2   NEDIIAGRNVVMEALRSGRAINKILVAKGERHGLMREIVGLAREQGLVVQEVDAAKLDAL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    AP+    +D           +  L++LD + DPHN+GAILR+A A 
Sbjct: 62  A-MGVRHQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADAT 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  KR S   SA +AK+++GA+E++P  RI N+   L+K+   G   +G      
Sbjct: 121 GVHGVLLPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K   +      + +++G+EG+G+   T+E    +  + M G + +LN S A ++ LY   
Sbjct: 181 KAYYETDLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 9/241 (3%)

Query: 47  ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++ 
Sbjct: 8   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 67

Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 68  D-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+    F   G        
Sbjct: 127 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDMQGTPS 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    +
Sbjct: 187 HKWNTA-GKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRN 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 252

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           +  + G + V  AL    R I +L+  K   A               P++TV    +DK+
Sbjct: 11  SEIIAGRNPVREALRAG-RPINKLVMAKGTAAGPLSEIIKLAREKNIPIQTVDKTHLDKL 69

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+    AP     ++              +++LD +NDPHN+GAI+R+  A 
Sbjct: 70  VA-GTPHQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVMLDEINDPHNLGAIIRTVDAA 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  +R + + +A +A++++GA+E++P  R++NL   ++++   G   +G   D  
Sbjct: 129 GAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQLKELGLWVVGADMDGP 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          + L++G EGKGL    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 189 EVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGSLNASVAAALLVYEVI 248

Query: 278 NHF 280
              
Sbjct: 249 RQR 251


>gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
 gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
          Length = 246

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103
           +   LYG++ V  AL   +RK F+L        +               V+      +++
Sbjct: 2   KEDILYGINPVREALR-GNRKAFELFVQTGGTDQRIAKLATLAEEKGIAVRRRERADLER 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+ L+ AP +   L+              L+VLD + DP N+GA++RSA  
Sbjct: 61  LAGNP-HHQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  +   + V+ K+++GA+E IP I+++NL   L+++   G    GL+ ++
Sbjct: 120 AGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K + Q      +AL++G+EG+G+RP  ++    +  +   G I +LN S A  + L+  
Sbjct: 180 NKDIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLFEA 239

Query: 277 QNHF 280
               
Sbjct: 240 ARQR 243


>gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
 gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
          Length = 519

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
           R  RD +  +  N       +  ++  +YG H V AAL   +R + ++  T         
Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132
               DA       V  VP + I ++    AVHQG+A + AP     L             
Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V D + DPHN+GAI+R+A A    G++  +R +   +A +AK A+GALE  P  R+
Sbjct: 335 PVIVVADGITDPHNLGAIIRTAEALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL+++   GF   G + ++K+ + +   +  + L++G+E +GL   T+E    + 
Sbjct: 395 VNLNRALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + + G   +LN S AA + LY      
Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQR 482


>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
          Length = 245

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +                      + +H        + G H    A
Sbjct: 1   MEVIQSKQNASIKTARKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R+       +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAHILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLLL--EDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R   L                  S+     +    +   AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 31  KKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDA 85
           K+  +   K R           + G + V  AL    R+I +L   K+    +     D 
Sbjct: 2   KQKHNAGAKPREGRGENADAFVIVGKNPVREALRTG-RQIDKLYVMKDNRDHVLGDLIDQ 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVL 138
                  V +V    +  +      HQG+A  TAP    +L       +A      ++V+
Sbjct: 61  AKKRRIIVHSVDKAKLAALAD-GGHHQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVM 119

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DHV DPHN GAI+RSA      G+I   R S S +AV  K+++GA+     +        
Sbjct: 120 DHVLDPHNFGAIVRSANLCGAHGVIFPDRRSASVTAVSMKASAGAMN-ATSMVKVGNLAR 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             +        +  +  +  P        K+AL++G+EGKG+ P  ++     A +   G
Sbjct: 179 CLETLKAQGFWVAAADMAGAPYYTRDFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYG 238

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            I + N S AA + +       
Sbjct: 239 SIDSFNASVAAGILMAEAARQR 260


>gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   A      L   LD +  S LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 286

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 90/257 (35%), Gaps = 4/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +   +       G+  V  AL         + A       L   A 
Sbjct: 24  NPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALELGWTIKTLVYAKAAKGKPLVEQAA 82

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +        V  V  + I  I  ++     + +                +  + LD V D
Sbjct: 83  VKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQKWKPLKDIRPEKGETYIALDRVRD 142

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+I     +   S    ++  G++   P  R S       K  
Sbjct: 143 PGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVEEFLSWKKS 202

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +         + S    + +     + +++G E  GL P+    A  +A +   G   +L
Sbjct: 203 AHVSVVATHLAGSVDYRKIDYAGKPVVILMGNEQSGLPPELAGKADQLARIPQQGRADSL 262

Query: 264 NVSNAAAVALYITQNHF 280
           N++ A AV L+  + H 
Sbjct: 263 NLAIATAVMLFEARRHL 279


>gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
 gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
          Length = 281

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 134/289 (46%), Gaps = 19/289 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M      +S K  S + +H  K   +    KK+++        + P+   ++G H V   
Sbjct: 1   MKY-DTSRSRKSTSKRQTHKKKY--DETTDKKIENIPD-----ASPQEEIIFGKHAVMET 52

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L       K+F      ++      +    H    + VP   +D++  + A HQGL L  
Sbjct: 53  LKKNKGINKLFYQKGLADSKISSIIELVKNHGGIFQEVPKSKLDELT-QGANHQGLVLTV 111

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P    T++              L++LD + DPHN+G+ILR+A AF   GII  KR +  
Sbjct: 112 PPFDYQTIEGCLALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVG 171

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++AK+++GA+EH+P +R++N+   ++ + + G          +   +       +A+
Sbjct: 172 LTGIVAKTSTGAIEHVPVVRVANIAQTIELLQNQGIWVFATDMAGEDVRQWNS-QGPLAI 230

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G EG+G+ P  ++ A  +  + M G +++LN S AA V +Y    H 
Sbjct: 231 VIGNEGQGVSPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHR 279


>gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
 gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
          Length = 1056

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 5/236 (2%)

Query: 42   HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
               Q  N+ +YG + +  A+    RKI+QL   +     L       H    + V  + +
Sbjct: 815  ERKQIINMIIYGKNPIKEAIKA-QRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFL 873

Query: 102  DKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              +  K+  HQG+A          LD        Q  ++LD +NDPHN+GAILR+  A +
Sbjct: 874  YDLT-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACA 932

Query: 159  CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             DG+I +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +
Sbjct: 933  LDGVIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQ 992

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q  KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y
Sbjct: 993  SFHQIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIY 1048


>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 262

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 6/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +    + ++ ++     + G   V  A+       + +L         + 
Sbjct: 6   SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIKANLDIDYLILTEIGYEKLDNY 64

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            D +      V  +      ++   E     +A+                   +  D V 
Sbjct: 65  IDKDKIKKHKVYCITDTLFKELASTENPQGIIAIVKMNNKKLDF----QGDFYLFCDKVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P     +    ++ +
Sbjct: 121 DPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKSL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF  I  S +S K   +E    KI L +G EG G+  +  + A     + MPG  ++
Sbjct: 181 KKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAES 240

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ +Y     
Sbjct: 241 LNVAIATSIIIYEKVRQ 257


>gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B]
 gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRI 244


>gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
 gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
             F+ G + V  AL +  R+I ++   ++               +   V+ VP + +D++
Sbjct: 1   MDFIIGKNPVIEALKS-KRQINKIWIAESVQRHSIQPIIQLAKQNGVLVQYVPKKKLDQM 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      +D               ++LD + DPHN+G+I+R+A A 
Sbjct: 60  V--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   G   +G  + +K
Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAK 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 178 EDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVY 237

Query: 278 NHF 280
              
Sbjct: 238 RKR 240


>gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
 gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
          Length = 243

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +F L   ++        A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D        +    ++LD V DPHN+GA LRSA A   
Sbjct: 62  SEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 182 LYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 250

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E  ++ G H++  AL+   R I ++   + A   L          H   V+ V  + +D
Sbjct: 2   EEQEWIGGKHSLLEALHAG-RTINKIWVAEGAQKHLTQPIVAEAKKHGIVVQFVDKRKLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++      HQG+  + AP     +D              L++LD + DPHN+G+ILR+A 
Sbjct: 61  QMAPGL-QHQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLS 213
                G+I  KR S + +A ++K+++GA+E++P  R++N   T    K          + 
Sbjct: 120 CTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVG 179

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  +      +    +A+++G E KG+    +ET   +  L M G + +LN S AA V +
Sbjct: 180 AKEEMYRSGNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIM 239

Query: 274 YITQNHF 280
           Y      
Sbjct: 240 YEVLRRR 246


>gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 245

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 10/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            E   + G   V  AL     KI ++L  K +  +           +   V+ +    +D
Sbjct: 2   EEKRMIEGRRPVMEALRAG-TKITRILLQKGSRGKPVDDILALAKEYSVKVEYLDKAALD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           K       HQG+  ET P            A      L++LDH+ DPHN+GA++R+A A 
Sbjct: 61  KRAT-SRNHQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
            CDGII  +R +   +    ++A+GA E++P  ++ NL   L +    G    G   D +
Sbjct: 120 GCDGIIIPERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGE 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        L++G+EG+GL    +E    +  L M G + +LN S A A+ +Y   
Sbjct: 180 SVYTTGDYQGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 296

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 141/267 (52%), Positives = 184/267 (68%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +      +++   +    +           LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVEAL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGSIKSLNVSN 281


>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
 gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
          Length = 260

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K + +  ++ +   +     + G   V  AL         LL  K        
Sbjct: 5   SPQNPRVKALAALKER-KERERTGRFLVEGRREVERALEAGLSLETLLLGPKAR----PE 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L     V  +  + + ++  +E   Q L +   P  S     +  + L++VL  +  
Sbjct: 60  DRALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEK 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILR+A     D ++  +        V+  S          +      +A + + 
Sbjct: 120 PGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF--ALPVYPVAEGEAARFLE 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  + + ++   +      +A +LGAE KGL    +  A     + M G   +L
Sbjct: 178 EHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSL 237

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ LY      +
Sbjct: 238 NVAVTAALLLYEALRQRS 255


>gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
 gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A]
 gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
          Length = 246

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 3   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 61

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 62  IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 120 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 180 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 239

Query: 277 QNHFA 281
                
Sbjct: 240 VKQRN 244


>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
 gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
          Length = 267

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 5/263 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALAR 80
              +   K ++   Q++    +   L + G+  V  AL++  +    L    A +    +
Sbjct: 4   SSQNLRVKLVKKLAQRN-FRQKERKLAVEGIRFVEEALSSTWQTEILLYTDQACQAQRGK 62

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLD 139
           +  D        V  V    + ++   E     LA+   P  +   +       L++++D
Sbjct: 63  ILLDLARDKGVEVLAVSDAIMKELSDTETPQGMLAVLRQPDYTLEDIIRPDQKPLVVIVD 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+RSA A    G+I  K      +    ++  G+L H+P I++S++ +AL
Sbjct: 123 GVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFHLPVIQVSDVNEAL 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           + + S G   +        P+ +      + +I+  EG G R +          + MPG 
Sbjct: 183 EYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGPREEIFRYNHQKITIPMPGC 242

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
            ++LNV+ A ++ LY       K
Sbjct: 243 AESLNVAIATSIILYEAIRQRHK 265


>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
 gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
          Length = 254

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             + + +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSNAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
 gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
          Length = 255

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 8   EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDFL 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D              +M+LD + DPHN+G+ILR+A A 
Sbjct: 68  S--NAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPHNLGSILRTADAS 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G ++++ 
Sbjct: 126 GVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWVAGTAANNA 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 186 TDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 245

Query: 278 NHFAK 282
               +
Sbjct: 246 RKRNE 250


>gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
 gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
          Length = 310

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 25/288 (8%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------------LFLYGVHTVSAALNN 63
           K       R   R  K   +  ++                       +YG H V AAL  
Sbjct: 5   KRPGSNSARPQRRFSKGKPTLERRYAKPKPVGTSVSSQDTEVEDPDLIYGRHPVIAALE- 63

Query: 64  PSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             R+I ++        ++           +   +  V P  + +I  K A HQG+  + +
Sbjct: 64  GDRQINKIWVMPKLRYDSRFHSLLTQAKANGTVIDEVDPHRLSQIT-KGANHQGIVAQIS 122

Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P     L+          ++ ++++ D + DPHN+GA++R+  A    G++  +R +   
Sbjct: 123 PYAYVELEELIEQAKARSSAPVILIADGITDPHNLGAMIRTTEAMGAQGLVIPQRRAAGI 182

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           ++ + K A+GALEH+P  R+ NL+ AL+++   GF   G  +DS K L        + L+
Sbjct: 183 TSTVMKVAAGALEHLPVARVVNLSRALEQLKEAGFWLYGTMADSGKLLHTIDFKGAVGLV 242

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EG+GL   TQ++  ++  + + G   +LN S A A+ALY      
Sbjct: 243 VGSEGEGLSLLTQKSCDALVSIPLAGKTPSLNASVATAIALYEVFRQR 290


>gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           denitrificans OS217]
 gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans
           OS217]
          Length = 246

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 10/246 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV--KTVPPQTID 102
            +  F+YG+H + + L +   +I +L   +     RL         F    +    +T+D
Sbjct: 2   KKQDFIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPLLKAAQDFGCTAQRATKKTLD 61

Query: 103 KIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +     + HQG+                 L        L++LD V DPHN+GA LR+A A
Sbjct: 62  EKAD-SSQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E    +  + M G + +LNVS A  V L+  
Sbjct: 181 DGALYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHFAK 282
                K
Sbjct: 241 VRQRIK 246


>gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
 gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHP--FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +   +      PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+   T+ +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S S +A   K+++GAL  +P  R  +L   LQ +   GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
 gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
          Length = 275

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 1/258 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +S +++     R   +   F + +R       + LYG HTV+AAL NP RK  +L  T+N
Sbjct: 7   NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  +L  D N+      + V P  ID+ +G +AVHQG+  E   L +P +D +    +++
Sbjct: 67  AARKLA-DENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL+
Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S+ +  L        +AL+LGAEGKGLR  T++T T++A L M
Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245

Query: 257 PGIIKALNVSNAAAVALY 274
           PG IK+LNVSNAAA+ALY
Sbjct: 246 PGEIKSLNVSNAAALALY 263


>gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
              +YG+H VSA L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLHPLLAEMESLGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+  +                  L   +    L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   ++V+ K A GA E +P I+++NL  +L+++   G   +G + 
Sbjct: 122 DAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
          Length = 245

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +                      + +H        + G H    A
Sbjct: 1   MEVIQSKQNASIKTARKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R+       +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAHILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLLL--EDVRDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R   L                  S+     +    +   AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
 gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +   +YG++ V  AL   SR+I +L     + +               PV+      ++
Sbjct: 2   SKEEIIYGLNPVMEALR-GSREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLN 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++ G E  HQG+AL+  P     LD V          L++VLD V DPHN+GA++RSA  
Sbjct: 61  RLCGTE-HHQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    +
Sbjct: 120 AGAHAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L Q+  +  +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+  
Sbjct: 180 RSTLYQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens 200]
          Length = 246

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +                    ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 242

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL      K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +         ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G E KG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
 gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLGISIQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     + + +  L++LD V DPHN+GA LR+A     D +
Sbjct: 65  EVHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRTADVAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   ++   K A GA E +P IR++NL   ++++       I  ++      + 
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
 gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 122/246 (49%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N +        D        +  VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD              ++VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVS--GQHQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 VYRKRS 245


>gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
 gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            +          S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRI 244


>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 275

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 11/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                K  +   +++    +       G   V  AL+ P   + +L AT  A+ R     
Sbjct: 10  RSPRIKGARRLAKRA-FRQRERRFLAEGPQAVREALDLPD-VVHELYATAEAMQRHTALI 67

Query: 86  NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV  V    + ++           L     +   L AV   +L++VL HV D
Sbjct: 68  RTAEQAGIPVHRVTLDVMGELAQTVTPQ--GLLAVCSFVDVPLSAVDRPRLVVVLSHVRD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LRSA A   D +I T       +    ++++G+L H+P +    + +    + 
Sbjct: 126 PGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLPVVVGVRIEEVTGFLR 185

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G   +      K+ L++     +    +A I G E  GL  +T   A     + + G 
Sbjct: 186 DAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQETLALADETVSVPIYGR 245

Query: 260 IKALNVSNAAAVALYITQN-HF 280
            ++LN++ AAAV LY T     
Sbjct: 246 AESLNLATAAAVCLYATAREQR 267


>gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              + G + V  AL +     KI+    ++    +            V+ VP + +D++ 
Sbjct: 2   MDLIIGKNPVLEALKSGREMNKIWIAEGSQRGQMQSIIQLAKEMGITVQYVPKKKMDQLS 61

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+  + A      +D           +   ++LD + DPHN+G+I+R+A A  
Sbjct: 62  D--GNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPHNLGSIMRTADAVG 119

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR S S +A +AK+++GA+E++P  R++NL   + ++   G    G  +   +
Sbjct: 120 AHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKERGVWIFGTDAKGTQ 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              Q      +AL++G+EGKG+    ++    +  L M G + +LN S AA++ +Y    
Sbjct: 180 DYRQLDGVIPLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239

Query: 279 HF 280
             
Sbjct: 240 KR 241


>gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 242

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +        D        +     + + ++
Sbjct: 2   ENNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +       +A+       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 STKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           piezotolerans WP3]
 gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            +    +G+H V A L N   ++ ++   +    +      +        V+    + +D
Sbjct: 2   KKQDITFGLHAVEAVLQNSPERVIEIWVLQGRDDKRLIPILEIASQWGVSVQYASRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157
                      +A   A  +    D         +  L++LD V DPHN+GA LR+A A 
Sbjct: 62  DKSAGGQHQGVVAKVKAAKILNDNDLHAMLDGTETPFLLILDGVTDPHNLGACLRNADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  S   + V++K A GA E +P  +++NL   ++ +   G    G + ++ 
Sbjct: 122 GVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGAAGEAD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + Q      +A+ +GAEGKGLR  T+E+  S+  + M G + +LNVS A  + L+   
Sbjct: 182 SDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGICLFEAV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 91/258 (35%), Positives = 139/258 (53%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           R + R  KK +  +   +    P + +++G H V AAL NP R    +LLAT     +++
Sbjct: 7   RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIE 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDH 140
                             I + + + AVHQG+AL  APL    L         +L++LD 
Sbjct: 67  ARFGRLKALEP--ADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQ 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAILRSA AF   G+I   R++P  +  LAK+A+GA+E  P   + NL+ AL 
Sbjct: 125 VTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALD 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G++T+GL+   ++ L + +    + L+LG+EG+GLR    E    +A + MPG  
Sbjct: 185 ELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPGGF 244

Query: 261 KALNVSNAAAVALYITQN 278
           ++LNVSNAAA+ALY    
Sbjct: 245 ESLNVSNAAAIALYEASR 262


>gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
 gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
          Length = 248

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 252

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 8/250 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +K +   Q E   +YG + V   L      I ++    N       +  +          
Sbjct: 2   EKEKDMEQQEK-VVYGRNAVLELLLKKPDSIEKIYFQFNTSHPKLKEILVSARRQKLVTG 60

Query: 98  PQTIDKIVGKEAV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAI 150
              ++++        HQG+    + +   T++           LL++L  + DPHNIGAI
Sbjct: 61  KARLERLSLMAGTTKHQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAI 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A + D ++  +      +A + K+++GAL H+   ++ +L   L+ +H   F  I
Sbjct: 121 IRTAEAVAADAVLLIEGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLII 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               D++           +A++LGAEG GL P+  +       + M G +++LNVS  A 
Sbjct: 181 AADMDAEINYTDIDLTKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAG 240

Query: 271 VALYITQNHF 280
           V LY      
Sbjct: 241 VLLYEAMRQR 250


>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 248

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +  ++     + G H V  A
Sbjct: 1   MKQIESAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +P      L+  +  +      ++L        +       +   E   Q  A+    
Sbjct: 42  LKSPGTVKEILIKDETKIP-----SDLDVSIQCYVLSEDAFSAVTETETPQQIAAVC--- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + + + Q ++++D V DP N+G ++R+A A   D ++     + + +    +SA
Sbjct: 94  --HMPEEKLASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP +R +  T   +              +     +        ALI+G EG G+
Sbjct: 152 QGSHFHIPVVRRNLHTYVDELKAEGVKVYGTALQNGAPYRDMSQAEF-FALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 211 NAALLEKTDLNLYVPLYGQAESLNVAIAAAILVYHLR 247


>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 259

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++  +K +++ +  ++   +     L G+H V+A L+        L++ ++ A   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                  P  V  +       +     V  G+ L             R     ++LD + 
Sbjct: 66  PLLARVDPQHVILLADSLFAPLT---TVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H      +  SS ++  +        +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 HVPL---LATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ L+      
Sbjct: 239 LNVAAAAAICLFEAVRQR 256


>gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
 gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
          Length = 240

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L +    I ++L  +                PVK +  + +D+++    
Sbjct: 4   YVYGKNVVKQLLQDGK-PIHEVLIQEGIRDTALEGEIKKRRIPVKVLGRKKMDQLL--NG 60

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A       +  L+            LL++LD + DPHN+GAILR+      DG+I
Sbjct: 61  NHQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVI 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +AK ++GA++ +    ++NL  A++ +   G+  +G   ++ +   + 
Sbjct: 121 IGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKKQGYWVVGTDFENSRDYREG 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + L++G+EG G+    ++       L M G + +LN S AA + LY      
Sbjct: 181 QYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 237


>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
 gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 258

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +          P++ +  Q +++   
Sbjct: 14  YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 73

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +AL +A            L+  +   L+++LD + DPHN+GA LRSA A   D
Sbjct: 74  EFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACLRSADATGVD 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  L
Sbjct: 134 FVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAENLL 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY      
Sbjct: 194 YAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQR 253

Query: 281 AK 282
            +
Sbjct: 254 GQ 255


>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGKVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
           Okra]
          Length = 259

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  ---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD      +L+  D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDLQNGFYILV--DK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL     
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKS 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +     +    +  ++N  I + +G EG G+       +   A + MPG  
Sbjct: 179 LQKKGFKLLVSSLDTNSNFYDVNMEN-NIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
 gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
          Length = 239

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YG + V+ AL      ++      ++A AR            V+  P   +D++ G  
Sbjct: 2   LIYGRNPVTEALREGRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAGTT 61

Query: 109 AVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           A    L      +  +   +    +    + LL++LD + DP N GAI+RSA      G+
Sbjct: 62  AHQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGAHGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S   SAV+AK+A+GA  ++P +++ NL   ++++        G + ++ +PLE+
Sbjct: 122 VVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQPLER 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  +AL++G+EG GLR   +E    +  + + G +++LN S AA + +Y      
Sbjct: 182 TDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239


>gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 248

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +L ++G + V  AL         L+A  +   R   +        V+ V  Q I+ 
Sbjct: 2   EKENHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQRVSRQKIED 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSC 159
           +   +     +AL +        + +  +     ++++LDH+ DP N+G+ILR+A  F  
Sbjct: 62  LANTKKTQGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  S   + V+ K+++GA+ H+P  ++ +L + ++K    G   +       + 
Sbjct: 122 SGVIIPKERSSPINEVVIKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVV-AVEKGGRN 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +      IAL++G+EGKG+     E A  +A + M G I +LNVSNA ++AL+     
Sbjct: 181 IAEIDFPYPIALVVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKR 240

Query: 280 FAK 282
             K
Sbjct: 241 RIK 243


>gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
 gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
          Length = 270

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 115/260 (44%), Gaps = 12/260 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M   + +    +      +YGVH V A +          +   +A  RL     L     
Sbjct: 1   MSKQSHRRGPKAPGGLDAVYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGN 60

Query: 93  VKTV--PPQTIDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHV 141
            K V  P  T+D++  + AVHQG+     P                +V  + LL+VLD +
Sbjct: 61  AKVVNQPRDTLDRLA-QGAVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGI 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D HN GA LRSA A    G++  K  +   +A + K A GA E +P  R++NL  +L +
Sbjct: 120 TDVHNFGACLRSADAAGAHGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLAR 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           M   G    G + +++  +         AL++GAEGKG+R  T+E    +  L M G + 
Sbjct: 180 MKELGVWVTGTAGEAEASVYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVA 239

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNVS A  + L+      A
Sbjct: 240 SLNVSVATGICLFEAVRQRA 259


>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGGFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 254

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
 gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
          Length = 265

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
 gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
          Length = 254

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 7/249 (2%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVP- 97
           ++         +YG H VSA L +    + ++  + +    R+            + VP 
Sbjct: 2   AKPAESSATRLIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPS 61

Query: 98  -PQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + +D +VG         +  A      L+  LD +  + L++VLD V DPHN+GA LR
Sbjct: 62  EHERLDALVGTRRHQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACLR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A A     ++  K  +   +A  AK ASGA + +PYI ++NL  AL++M   G   +G 
Sbjct: 122 VADAAGAHAVVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVGA 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + +++K + Q  +   +A +LGAEG GLR  T++T   +A + M G +++LNVS A+ + 
Sbjct: 182 AGEAEKSVYQVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGIC 241

Query: 273 LYITQNHFA 281
           L+  +   A
Sbjct: 242 LFEARRQRA 250


>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
 gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
          Length = 265

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSIQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
 gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
          Length = 246

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     + L ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 260

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 100/259 (38%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ +  +KS    +     + G+            +I ++  +++     + + 
Sbjct: 6   SNKKIKELLALVKKSSVRKKQNAYIVEGIRMFKEL---EPEEILEVFVSESF---ENENK 59

Query: 86  NLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHV 141
            L        +TV  +  D I   +     LA+      +    L         ++LD +
Sbjct: 60  GLLKNIYPEYETVSDRIFDSISDTKTPQGVLAVAKRKEYTIDSILKEAGRPFSFLILDSL 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A       II  +      +  + +S  G++  +P+I + +L   + K
Sbjct: 120 QDPGNLGTLVRAAEGAGITCIIMNENTVDIYNPKVIRSTMGSIFRVPFIYVKDLKKVIDK 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + S   +    S +     ++      IA ++G E  G+     +       + M G ++
Sbjct: 180 LQSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVE 239

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + A ++ +Y      
Sbjct: 240 SLNAAVAGSILMYEAARQR 258


>gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413]
 gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413]
          Length = 260

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 95/257 (36%), Gaps = 5/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84
            +   K+++  +  ++   +     L G H +  A       ++        A     W+
Sbjct: 6   QNSLVKQIRKLH-STKERHKQGLFLLEGTHLLEEACAMDYPLEVVCCTPEWEASHTALWE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V  + +  I       Q   +      S     +  + +++ L+ + DP
Sbjct: 65  EACNRCDRCEIVSEEVLQAIA---TTVQPDGVVATAKRSELQSQIPFTGVVLALETIQDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A    G+  ++     ++  + ++++G    +      +L   +Q    
Sbjct: 122 GNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLATAVSEDLKATVQLCQQ 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +     +K    +   +    ++LG EG GL P     A     + +   +++LN
Sbjct: 182 AGMQVVATLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
           V+  +A+ LY  Q    
Sbjct: 242 VAITSALMLYEVQRQLN 258


>gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
 gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
          Length = 246

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F++G H V++ L      I ++       +  A+            V +     +  + G
Sbjct: 6   FIFGFHAVTSRLRQNPNSIREIFIDATRTDQRAQELIKLAENKNIHVISCTGSKLTSMSG 65

Query: 107 KEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+        +       LD +     L+VLD + DPHN+GA LR A AF    
Sbjct: 66  NDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLRVADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + K +SGA + +PYI ++NL   L+++   G    G + D+   L 
Sbjct: 125 VIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGTAEDAAHDLT 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +  +A + G+E KGLR  T+E    +  + M G I++LNV+ +A + L+ T   
Sbjct: 185 HFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETHRQ 242


>gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L      K++     +                 +   P +
Sbjct: 2   KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +                  + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTPSHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 7/240 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V+  L    + + ++      ++A  R   +        +     + + ++ G
Sbjct: 23  VLFGFHAVTVRLKTAPQSVKEIHVDATRRDARMRQFVERAEAAGAKLVDSDGERLTQLAG 82

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A  T    + +LD   ++     L++VLD V DPHN+GA LR A       +
Sbjct: 83  SGRHQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDPHNLGACLRVADGAGACAV 142

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K ++   +A +AK ASGA E +PY+ ++NL  +L +M     + IG S D+ K +  
Sbjct: 143 VAPKDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKERDIRVIGTSDDATKTIYD 202

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +AL+LGAEG G+R  T++T   +  + M G +++LNVS AA + LY      ++
Sbjct: 203 VDLRGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLYEALRQRSR 262


>gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
 gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
          Length = 255

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I      HQG+    + +           L     + L ++LD + D  N GAI R+  
Sbjct: 62  RIT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 AVKQR 244


>gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
          Length = 255

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I      HQG+    + +           L     + L ++LD + D  N GAI R+  
Sbjct: 62  RIT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 AVKQR 244


>gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 254

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L    +                V+ V  + ++++  + 
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFVLDGCHDGPVNSIMREARKKDTLVQYVSKERLNQLS-QT 63

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A     T++ +            +++LD + DPHN+GAI+R+A      G
Sbjct: 64  GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R +   +A +A++++GAL + P  +++NLT  ++ +   G   +       + + 
Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCA-DMDGQKMY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      I +++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 183 QLNLRGPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQR 241


>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
          Length = 265

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 251

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L      K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151
            +T+  +     VHQG  L+ +      L           + L+++LD + DPHN+G+IL
Sbjct: 64  KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K  K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
 gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
          Length = 246

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   +  V  + +D++   +
Sbjct: 8   IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREARKHDTIINFVDKERLDQLSETK 67

Query: 109 AVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A+  A   +   D ++N         + +LD++ DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVIAVAAAYEYAEVEDILKNAEEKGEPPFIFILDNIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GA+ + P  +++NLT A++++   G   +         + +
Sbjct: 128 IIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTAAIKELKEKGLWFVCA-DMGGTEMYK 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 187 LDLKGPIGLVIGNEGEGVSKLVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
          Length = 260

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K + +  ++ +   +     + G   V  AL         LL  K        
Sbjct: 5   SPQNPRVKALAALKER-KERERTGRFLVEGRREVERALEAGLSLETLLLGPKAR----PE 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L     V  +  + + ++  +E   Q L +   P  S     +  + L++VL  +  
Sbjct: 60  DRALAGGAEVLELSERALARVSARENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEK 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILR+A     D ++  +        V+  S          +      +A + + 
Sbjct: 120 PGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF--ALPVYPVAEEEAARFLE 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  + + ++   +      +A +LGAE KGL    +  A     + M G   +L
Sbjct: 178 EQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSL 237

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ LY      +
Sbjct: 238 NVAVTAALLLYEALRQRS 255


>gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316]
 gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 249

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L      K++     +                 +   P
Sbjct: 2   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151
            + +  +     VHQG  L+ +      L           + L+++LD + DPHN+G+IL
Sbjct: 62  KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 121 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K  K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 181 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 239

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 240 LMYEVFRNR 248


>gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
 gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
          Length = 251

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L      K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151
            + +  +     VHQG  L+ +      L           + L+++LD + DPHN+G+IL
Sbjct: 64  KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K  K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 251

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQNHF 280
           LY      
Sbjct: 239 LYEVYRKR 246


>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
 gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
          Length = 251

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+E +   K                        +   Q +   + G H V  A
Sbjct: 1   MKHISSPKNEIVKQWKKLLTK-------------------KGRLQTKRFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I +L+  ++      W  N      +          +   E      A+    
Sbjct: 42  VRAG--IIKELIVREDVQVPGSWKKNAADLITI---DESVAKVLSETETTQGIFAVCEMK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  L+  R     ++LD + DP N+G ++R+A A   DG+I         ++ + ++ 
Sbjct: 97  QQTERLERGRY----LLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P I +S             F        ++   + E     I LI+G E +G+
Sbjct: 153 QGSIFHLPVIMMSLEEAIQDLHELGVFILGTALRGAQPYTDVENL-GAIGLIIGNEAQGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+  +     A++ + G  ++LN + AA + LY   
Sbjct: 212 APELLDQCDGRAYIPIRGKAESLNAAVAAGILLYHFA 248


>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
 gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
          Length = 265

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKQGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENSVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334]
          Length = 253

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 26/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K                        +H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +             A  +   D  L   +   T   +++ + +      QG+      
Sbjct: 42  LASGQTPYDIY-----ATEKYVEDRALKPFYEKITQISESVSEHLSDTQTPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +    LL+  D + DP N+G ++R+A A     ++     + +    + ++ 
Sbjct: 97  RAEQLPEPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +    +                  ++  K       +++ ALI+G EG G+
Sbjct: 155 QGSQFHVRIVSAKLMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGM 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   +   +  ++ + G  ++LNV+ AAAV ++  
Sbjct: 215 DPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250


>gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
 gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 7/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V+A L    + + ++      ++   +            V  +  + +D + G
Sbjct: 6   LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65

Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                       A      +   LD +     L++LD + DPHN+GA LR A A     +
Sbjct: 66  HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   +A ++K A GA E +PYI+++NL   L+ +   G    G   D +  L  
Sbjct: 126 LAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + +A ++G+EG+G+R  T+E    +  + M G +++LNVS A  + L  T+  
Sbjct: 186 FEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQ 242


>gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
 gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
          Length = 247

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L      K++     +                 +   P +
Sbjct: 2   KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L           + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     +      ++ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTPSHKWNTA-GRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     + L ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 242

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +                 +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241


>gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 45  QPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
             +N  +YGVH V+ AL      K++     +                 +   P +T+  
Sbjct: 7   NDQNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVSISWTPKKTLSD 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  +      LD          + L+++LD +NDPHN G+ILR+A A 
Sbjct: 67  MT-NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHNFGSILRTADAT 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   +  
Sbjct: 126 NVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGT 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +      K+ALI+G EGKG+ P  ++    M  + M G +++LN S AAAV +Y   
Sbjct: 186 PSHKWNTA-GKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVF 244

Query: 278 NH 279
            H
Sbjct: 245 RH 246


>gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           entomophila L48]
          Length = 247

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+  ++     R+     L     V+    +  +     E 
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S S +AV+ K A GA E IP + ++NL+  L+K+   G   +G + ++++ + Q
Sbjct: 127 VIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEIYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+       K
Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQK 246


>gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K++ +  +K++   +       G+         P  +I  L  +++ L +   
Sbjct: 4   SSANGKVKQVMNLAKKAKARKETGLFVAEGLRMFKEI---PRDRIDSLFVSESFL-KNPE 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHV 141
              L  P   + V       +       QG+            D        LLM+LD +
Sbjct: 60  GRKLIGPLAFEAVADDVFKTMSD-TTTPQGVLALVKQYAYTIDDILDRPGPALLMILDTI 118

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+       G+I     +   +  + +S  G++  +P++  + L   L  
Sbjct: 119 QDPGNLGTILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRVPFVYTAALPQTLAN 178

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G +      + +   E+E        ++G E  GL  +T   A +   + M G ++
Sbjct: 179 IKKRGVRLYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMADAYVKIPMMGKVE 238

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V ++      
Sbjct: 239 SLNAAVAASVLMFEAARQR 257


>gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 2603V/R]
 gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 251

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L      K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151
            +T+  +     VHQG  L+ +      L           + L+++LD + DPHN+G+IL
Sbjct: 64  KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKEFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K  K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNGTPSHKWNTK-GKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 296

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +    +   + R     +          ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFTTQNALARLEIDVETL-GIPFEIVSPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO]
          Length = 254

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
 gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
          Length = 247

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella
           tarda FL6-60]
          Length = 247

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V        +A           D         +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  VEGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 122 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 SLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
          Length = 323

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 137/298 (45%), Gaps = 24/298 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENLFLYG 53
             K+ + I  +K          H+   + +SF+ K R + Q            E+  +YG
Sbjct: 13  ETKRVQPIK-IKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESDLIYG 71

Query: 54  VHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            H V +AL N  R + +L        +            +   +  V P+ +D+I    A
Sbjct: 72  RHPVLSALEN-QRGLNRLWITARLRYDPRFHHLILQAKDNGTVIDEVEPKRLDQITD-GA 129

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A + AP     L+ +          +++V D + DPHN+GAI+R+A A    G++
Sbjct: 130 NHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAEAIGSQGLV 189

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R +   ++ + K A+GALE+ P  R+ NL+ AL+++   G+   G ++   +P+   
Sbjct: 190 IPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAAGSEPIHTV 249

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +    L++G+EG GL   TQ +   +  + + G   +LN S AA +ALY      +
Sbjct: 250 KFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYEIYRQRS 307


>gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580]
 gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580]
          Length = 249

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N +        D    +   +  VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD              ++VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVS--GQHQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 VYRKRS 245


>gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
 gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
          Length = 248

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   D        +       I K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLDRAREAGARLIEADSVRIAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A         +LD              LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAPK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY    
Sbjct: 186 TIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEALR 245

Query: 279 HFA 281
             +
Sbjct: 246 QRS 248


>gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 246

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E+L + G + V  A  +     K+F L   ++   R        H   ++ V  + +D+
Sbjct: 3   EESLIIEGRNAVIEAFRSGKTIDKVFVLDGCQDGPVRTIVREAKKHDTILQFVTKERLDQ 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +         +A   A   +   D             + +LD++ DPHN+GAI+R+A   
Sbjct: 63  LSETGKHQGVVAHAAAYEYAEVEDILALAKEKGEDPFIFILDNIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +       
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DMGG 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +      I L++G EG G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 182 ETMYRLNLTGPIGLVIGNEGTGVGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
           CFBP2957]
 gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CFBP2957]
          Length = 263

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 102/259 (39%), Gaps = 8/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++  +K +++ +  ++   +     L G+H V+A L+        L++ ++ A   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPTQCLVSERHLAHPEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                  P  V  +      ++     V  G+ L             R     ++LD + 
Sbjct: 66  PLLARVDPQHVILLADSLFAQLT---TVVNGIDLMALIDTPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H      +  SS ++  +        +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 HVPL---LATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AAA+ L+       
Sbjct: 239 LNVAAAAAICLFEAVRQRT 257


>gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Thiomonas sp. 3As]
          Length = 242

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 7/237 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           LYG H V A L      +  +      ++A  +            +KT+  + +  + G 
Sbjct: 4   LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63

Query: 108 EAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +       Q   L T   L   LDAV  + L++ LD V DPHN+GAILR+A A     +I
Sbjct: 64  DRHQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLVI 123

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G   +G    +   +   
Sbjct: 124 APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYAA 183

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  L++GAEG G+R   +ET   +  + M G +++LNVS AA V LY      
Sbjct: 184 NWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W]
 gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II]
          Length = 253

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 28/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K                        +H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +             A  +   D  L   +  +  +     + +   +   QG+     
Sbjct: 42  LASGQTPYDIY-----ATEKYVEDRALKPFYDKITQISESVSEHLSDTQ-TPQGIFAVMP 95

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  + +    LL+  D + DP N+G ++R+A A     ++     + +    + ++
Sbjct: 96  RRAEQLPEPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRA 153

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+  H+  +    +                  ++  K       +++ ALI+G EG G
Sbjct: 154 MQGSQFHVRIVSAKLMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P   +   +  ++ + G  ++LNV+ AAAV ++  
Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250


>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
 gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
          Length = 254

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSVKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +   +A    ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSSADQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia
           psychrerythraea 34H]
 gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia
           psychrerythraea 34H]
          Length = 251

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 12/248 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
                ++G+H V+A +N    +  ++      ++       + +  +    +    + +D
Sbjct: 3   KNEELVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALD 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS---------QLLMVLDHVNDPHNIGAILRS 153
           +    E     +A           D                 ++LD V DPHN+GA LR+
Sbjct: 63  EKSEGEQHQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRN 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  +   +  + K A GA+E +P ++++NL+  ++++   G   +G +
Sbjct: 123 ADAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTA 182

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   L     +  +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + L
Sbjct: 183 GETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICL 242

Query: 274 YITQNHFA 281
           +      +
Sbjct: 243 FEMVRQRS 250


>gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
 gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
          Length = 257

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 13/260 (5%)

Query: 33  MQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH 89
           M+  N+K+++T    E   + G + V  AL      I  +    +A     L        
Sbjct: 1   MRDKNEKTKNTENAAEEELILGRNPVIEALKADK-LIDIIFVNPDAKGSISLILKLARER 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
             PVK V  Q +D +    A HQG+    A      +D +            +++ D + 
Sbjct: 60  DIPVKQVREQKLDFMA-HGAAHQGVIAIGACAEYVEVDDILKIAADKGEDPFIIICDEIE 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R++NL  A+  +
Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G    G     +     ++    + L++G+EG G+    +E    +  L M G I +
Sbjct: 179 KKQGIWIYGTDGAGENYSGVDM-RGPVGLVVGSEGFGMGRLMKEKCDFLLSLPMAGKITS 237

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN S AA + +Y      AK
Sbjct: 238 LNASVAAGIFMYEVVRQRAK 257


>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
 gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens SM101]
 gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
          Length = 289

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M     K  +     K +   + R   R+ K  ++    +    +     + G + V   
Sbjct: 1   MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFAEEEVKVREDLVEGRNAVIEL 58

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     +IF                       VK V  + +D +   +A HQG+  + 
Sbjct: 59  LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +  
Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +
Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI 237

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           I+G+EG+G+   T++    +  + M G I +LN S A  + +Y       
Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287


>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
 gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
          Length = 254

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 244

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++G+H V A L +   +  ++   K     RL             ++    + +D  V  
Sbjct: 6   IFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDKVKG 65

Query: 108 EAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +    +A               L   + + LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  ASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNADAAGAVAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++   + Q
Sbjct: 126 IVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+      +
Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRS 244


>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 265

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 100/258 (38%), Gaps = 9/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K++ +   +++   +       G+          S K  ++L      A    +  
Sbjct: 7   NKQVKRVVNLRNRAKARREEGVYVAEGLRMCREL----SIKDTEILYVTEGFAGDRENRK 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVN 142
               F  + V    +  +   +   QG+            D ++  +     +MVL+ + 
Sbjct: 63  WMDGFRFEIVTDVVMKVMADTQ-TPQGVLAVARQKTYTLEDILKAPRNGKLAIMVLETIQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A      GI+  +  +   +  + +S  G++  +P++ + ++  A Q M
Sbjct: 122 DPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSICRMPFVCVDDIRQACQTM 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G +            +QE   D +  ++G E  GL   T   A     + M G +++
Sbjct: 182 KDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEAGGLTDGTAAMADCYVKIPMAGRVES 241

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA+V ++      
Sbjct: 242 LNAAVAASVLMFEAARQR 259


>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
 gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
          Length = 254

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEVLAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGLHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            +          S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRI 244


>gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 276

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 133/272 (48%), Positives = 185/272 (68%), Gaps = 5/272 (1%)

Query: 13  FSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKI 68
            + ++S++A LRR +RD K  + S + + ++   P   E + LYG+H V+AAL NP+R +
Sbjct: 4   KARRNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVL 63

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             L AT NAL RL+   + P P  ++   P+ +D ++G +AVHQG+ LET PL S  L  
Sbjct: 64  ECLYATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSE 122

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++ L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE I 
Sbjct: 123 LTHTDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMID 182

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           YI + NL +AL+++H   F + GL S+  KPLE  +   KIALILGAEGKGLR KT+ET 
Sbjct: 183 YITVRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETV 242

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++A L MPG IK+LNVSNAA +ALY T  + 
Sbjct: 243 CALARLDMPGNIKSLNVSNAATIALYATHKYL 274


>gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002]
 gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 262

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  +Q  R   +   L L G + + AA+         +L T     +    A
Sbjct: 6   QNPLVKEIRKLHQ-GRERQKQGRLLLEGTNLIEAAIAKG-FSFQTVLFTAAWQTKYPALA 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +  +      V  + + K+     V+    + T      +    +  QL + ++ + DP 
Sbjct: 64  SQLNGDRQTLVSEEVLQKVA--TTVNPDGIVATLDQALISQTPPQTLQLGVAVERLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A + DG++ +       +  + +++ GA      + I    + LQ+  + 
Sbjct: 122 NLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVVIPTFAEQLQRYRAQ 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +     + K            ++LG EG GL P     A     + M   +++LNV
Sbjct: 182 GVQIVATLPQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLANETVQIPMGPGVESLNV 241

Query: 266 SNAAAVALYITQNHF 280
           + A A+ LY  +   
Sbjct: 242 AIACALMLYEARRQR 256


>gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens str. 13]
 gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
 gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
           13]
 gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
          Length = 289

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M     K  +     K +   + R   R+ K  ++    +    +     + G + V   
Sbjct: 1   MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFTEEEVKVREDLVEGRNAVIEL 58

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     +IF                       VK V  + +D +   +A HQG+  + 
Sbjct: 59  LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +  
Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +
Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI 237

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           I+G+EG+G+   T++    +  + M G I +LN S A  + +Y       
Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287


>gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 100/261 (38%), Gaps = 10/261 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA- 85
           +   + + +  +K++   +     + G    +     P  ++ +   +++ L +    A 
Sbjct: 7   NNRVRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKAS 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLD 139
            L      + V    +  +   +     L      +     ++        +   LM+L+
Sbjct: 64  KLLQGICFEEVSDDVMKYMSDTQTPQGILAVAAQLSHSLNEIVKGDGIKRNSPAHLMILE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+       G++     +   +  + +S  G++  +P++ + +   AL
Sbjct: 124 TIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQAL 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++ + G +        K   E E        ++G E  GL  +T   A     + M G 
Sbjct: 184 GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQ 243

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LN + AA++ ++ T    
Sbjct: 244 VESLNAAVAASILMFETARQR 264


>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
 gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
          Length = 265

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLKEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            +         ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRI 244


>gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 11/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
              +YGV+ +  AL +    + +++  +        +          PV+      +D +
Sbjct: 1   MEVIYGVNPLREALISGGEGVTRIVVARGRSESSISEIRTLAKQRGIPVEIRERSFLDDL 60

Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G  + HQG+           LD             L+++LD + DPHN+GA++RSA  F
Sbjct: 61  AGHAS-HQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILDPHNLGALIRSAHCF 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +GII  +R + S +  + K+++GA  HIP  R++NL  AL ++ + GF   G  + + 
Sbjct: 120 GANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELKTKGFWIFGADARAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        + L++G E KGLRP  ++    +  + M G I +LNVS +  + L+  +
Sbjct: 180 QSVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIR 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Vollum]
 gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Australia 94]
 gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
 gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
          Length = 254

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLKEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS223]
 gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS223]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +        +  +        ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+                 L A      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
 gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
            ++ +LYG+H + A +     ++ +L   K    +      +        V+    +T+D
Sbjct: 2   AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINSIINHARKFGIAVQFCQRKTLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             V  E     +A           D         +  L++LD V DPHN+GA LR+A A 
Sbjct: 62  DKVNGEQHQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++ 
Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY   
Sbjct: 182 QSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEIV 241

Query: 278 NHFA 281
               
Sbjct: 242 RQRT 245


>gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 294

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A     +   K +      ++H  +     L G H ++A L+  +  +   L        
Sbjct: 35  AIQSPQNPQLKHLAKLLGHAKHRREHSQAVLEGAHLLTAYLDAGNTPLQVYL--PEHRLH 92

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A L    P   V P +   +     +HQ   L T   L P +       +L+  D 
Sbjct: 93  EPEIAALLCRLPADIVQPVSGKALGKITQLHQAEDLMTLIALPPPVAPESPDYVLL--DR 150

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V D  N+G +LRSA A     I+  +  + + S  + ++  GA   +       LT+   
Sbjct: 151 VQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLRAGMGAHFLLHIQERVCLTEWCA 210

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +          L  +    L Q       A I G EG G+ P+    A     + M G  
Sbjct: 211 RY-PHAVYATALDGNRPALLYQLDLRAPCAWIFGNEGSGVSPELIALAGRSVKIPMQGAT 269

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN++ AA V L+      
Sbjct: 270 ESLNIAQAATVCLFEQMRQR 289


>gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
 gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  +L   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 255

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I      HQG+    + +           L     + L ++LD + D  N GAI R+  
Sbjct: 62  RIT--RKNHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 AVKQR 244


>gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E + + G H V  A+ +     KI      K             +   V++VP   ID +
Sbjct: 2   EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKLANSNKIIVQSVPKSKIDGL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               + HQG+A   AP      DA    Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  SD--SPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA++HIP +R++NL + ++ +   G+  +G  +++ 
Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIVGTEAENS 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      + +++G+EG+G+    +E      ++ M G + +LN S AA++ +Y   
Sbjct: 180 TDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHFA 281
               
Sbjct: 240 RKRN 243


>gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
 gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
          Length = 245

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens ATCC 13124]
 gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
          Length = 289

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M     K  +     K +   + R   R+ K  ++    +    +     + G + V   
Sbjct: 1   MTKSENKYKQLTRKQKYALEREQRA--REEKYARNTRTFAEEEVKVREDLVEGRNAVIEL 58

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     +IF                       VK V  + +D +   +A HQG+  + 
Sbjct: 59  LKSDKTIEQIFIANGKMEGSINKILGLAKEKKIVVKEVDRKKLDLMSETKA-HQGVIAQI 117

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +  
Sbjct: 118 TPFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVG 177

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +
Sbjct: 178 VTGTVYKASVGAIEHMKIAKVTNINNAIEELKANNLWIYGADIAGEEYSYETNFKGACGI 237

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           I+G+EG+G+   T++    +  + M G I +LN S A  + +Y       
Sbjct: 238 IIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRI 287


>gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 265

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
           7002]
          Length = 388

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQT 100
           + +N  +YG H V + L +  R + ++                 A       +  V    
Sbjct: 131 EEDNDLIYGKHAVLSVLES-ERPLNRIWVTSRLRHANRFHTLLQAAKNQGTVIDEVSMSR 189

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +     VHQG+A++TAP     L        A   S ++++ D + DPHN+GAI+R+
Sbjct: 190 LDYLT-NRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRT 248

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  +R +   ++ + K A+GALEH P  R+ NL+ A++++   GF   G +
Sbjct: 249 AEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTA 308

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + + K L        I L++G+EG+GL   TQ+    +  + M G   +LN S AAA+AL
Sbjct: 309 AGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIAL 368

Query: 274 YITQNH 279
           Y     
Sbjct: 369 YEVYRQ 374


>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
 gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           A1055]
 gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
          Length = 254

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
 gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
          Length = 292

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 15/284 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            + ++  S + + ++  +         +     S    Q E+  +YG H+V AAL +  +
Sbjct: 7   PRGDRRSSSRKAKFSGKKPVIPS----RLQPTSSPEPQQSEDDLIYGRHSVLAALESDRQ 62

Query: 67  KIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                +      +        A+      +  V  Q + +I    A HQG+A + AP   
Sbjct: 63  LNRIWITNRLHYDPRFHNLIQASKAKGAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTY 121

Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             LD          +  ++++ D + DPHN+GAI+R+A A  C G+I  +R +   ++ +
Sbjct: 122 HELDELITQAKANSDEPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTV 181

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           +K ++GALE  P  R+ NL+ AL+ + + GF   G  ++  K L+       I L++G+E
Sbjct: 182 SKVSAGALESFPVARVVNLSRALETLKAEGFWIYGTVAEGGKRLQDFDFRGAIGLVIGSE 241

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G GL   TQ     +  + + G   +LN S AAA+ LY      
Sbjct: 242 GSGLSLLTQRCCDELISIPLEGKTPSLNASVAAAINLYEIYRQR 285


>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
 gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
          Length = 265

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 97/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          +      +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENSVPVYGTALENGAPYG-EVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
 gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
          Length = 265

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  +      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVD---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 108 ESEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 SQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 239

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEA 109
           +YG   V  A+++  +     +  +N+    +  A L      +  V  +  DKI   E 
Sbjct: 9   IYGRKPVIDAIDSGVKIYKAFVIKQNSKIVEEIIAKLNKANVEINFVDKRFFDKI---EL 65

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+ +E        L  +   Q L++LD + DPHN+GAI+RSA +F  DG+I  +R S
Sbjct: 66  NHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIRSAESFGFDGVIIPERRS 125

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S S ++ K+++GA+ +I  I + N   A++++   GF   GL+ ++  P++Q     K+
Sbjct: 126 ASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGLAGEASSPIDQVDLKGKV 185

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            LI+G EGKGL    +E    + ++ M G + +LN S A+A+A+Y     
Sbjct: 186 CLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQ 235


>gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 519

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 126/268 (47%), Gaps = 14/268 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
           R  RD +  +  N       +  ++  +YG H V AAL   +R + ++  T         
Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132
               DA       V  VP + I ++    AVHQG+A + AP     L             
Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V D + DPHN+GAI+R+A A    G++  +R +   +A +AK A+GALE  P  R+
Sbjct: 335 PVIVVADGITDPHNLGAIIRTAGALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL+++   GF   G + ++K+ + +   +  + L++G+E +GL   T+E    + 
Sbjct: 395 VNLNPALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + + G   +LN S AA + LY      
Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQR 482


>gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 100/261 (38%), Gaps = 10/261 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA- 85
           +   + + +  +K++   +     + G    +     P  ++ +   +++ L +    A 
Sbjct: 7   NNRVRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKAS 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLD 139
            L      + V    +  +   +     L      +     ++        +   LM+L+
Sbjct: 64  ELLQGICFEEVSDDVMKYMSDTQTPQGILAVAAQLSHSLNEIVKGDGIKRDSPAHLMILE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+       G++     +   +  + +S  G++  +P++ + +   AL
Sbjct: 124 TIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQAL 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++ + G +        K   E E        ++G E  GL  +T   A     + M G 
Sbjct: 184 GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQ 243

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LN + AA++ ++ T    
Sbjct: 244 VESLNAAVAASILMFETARQR 264


>gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 259

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     A + +  L++LD V DPHN+GA LR+A A   D +
Sbjct: 77  EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   ++   K A GA E +P IR++NL   ++++       I  ++      + 
Sbjct: 137 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 197 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254


>gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 259

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     A + +  L++LD V DPHN+GA LR+A A   D +
Sbjct: 77  EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   ++   K A GA E +P IR++NL   ++++       I  ++      + 
Sbjct: 137 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 197 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254


>gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 247

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     A + +  L++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   ++   K A GA E +P IR++NL   ++++       I  ++      + 
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 QAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E + + G H V  A+ +     KI      K                 V++VP   ID +
Sbjct: 2   EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKKANSRKIIVQSVPKSKIDGL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               + HQG+A   AP      DA    Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  SD--SPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EHIP +R++NL + ++ +   G+  +G  +++ 
Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEANNS 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      +A+++G+EG+G+    ++      ++ M G + +LN S AA++ +Y   
Sbjct: 180 TDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHFA 281
               
Sbjct: 240 RKRN 243


>gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
 gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG+    + +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  FT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L N   ++ ++   K    +      +        V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64

Query: 108 EAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+                 L   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL         +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   +K V  + +D++    
Sbjct: 10  VEGRNAVLEAFRSGKSVDKLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQLSETG 69

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A+  A   +   D             L++LD++ DPHN+GAI+R+A      G+
Sbjct: 70  KHQGVIAMTAAYNYAEVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGV 129

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A +A++++GAL + P  +++NL   ++ +   G   +         +  
Sbjct: 130 IIPKNRAVGLTATVARTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCA-DMGGTQMYD 188

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 189 LDLKGAIGLVIGNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQR 246


>gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 246

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG+    + +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  FT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
 gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           ++TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+I+R+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG++  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G  +D+
Sbjct: 119 SGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 YRKR 242


>gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 248

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101
           +  N  + G + VS AL +  R I ++L  + A                 PV+TV  + +
Sbjct: 3   EQNNDLIAGRNAVSEALRS-QRSINKILLQEGAHGGSLGEIIALAKQKGVPVETVKAEKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154
           DK+      HQG+A   AP+   TLD V            +++LD + DP N+GA++RSA
Sbjct: 62  DKLAKGLR-HQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQDPQNVGALIRSA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  +R S   +AV+AK ++GA+E++P ++I N+   ++++       +  + 
Sbjct: 121 DAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEEL-KQRGCWVVGAD 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      +  I L++GAEG+GL    ++    +  + M G + +LN S A AV +Y
Sbjct: 180 MDGVDFYAANMSGPIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSLNASAAGAVLMY 239

Query: 275 ITQNHF 280
                 
Sbjct: 240 EVVRQR 245


>gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
 gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
          Length = 243

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAAAKKVSISWSPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +      L           + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 VHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
 gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
          Length = 254

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+    
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMMLT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 SK----DTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 260

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 99/256 (38%), Gaps = 5/256 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+++   +  +   +    F  G H +  A       +  L   K  +        
Sbjct: 7   NPLIKQIREL-RNVKKRREKGIFFFEGTHLLMTACEENCSLLTLLFTEKWKIENFKLWEI 65

Query: 87  LPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V P+ +  I           +    L  P   A  + +L ++L+ + DP 
Sbjct: 66  ASRLTKRYETVSPEVLKSITTTVNP---DGVIVTALSRPFDKAKTDIKLGLILERLQDPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+AVA + DGI  +      +++ + ++++GA    P +  SNL D +    + 
Sbjct: 123 NLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQ 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +    ++KK            ++LG EG GL  +    A     + +   I++LNV
Sbjct: 183 GVNVVATLPNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNV 242

Query: 266 SNAAAVALYITQNHFA 281
           +   A+ LY  +    
Sbjct: 243 AVTGALILYEAKRQRT 258


>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++  + + K                        +   +     + G H V  A
Sbjct: 1   MEVITSLQNVHVKTWKKLQT-------------------RKGRQKSGQYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         +      L     +      F V  V  +     +      QG+      
Sbjct: 42  LAQDGLVKEVIYTKDTILPFSLTETA----FDVYEVTREV-SHAISDTKTDQGVFAVVEM 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L       LL+  D V DP N+G ++R+A A   D ++  +  +   +  + +SA
Sbjct: 97  LEPSILMLFGKRFLLV--DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSA 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+ + L                L  +    LE     + +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                E  +   ++ + G  ++LNV+ AA + +Y  + 
Sbjct: 215 SAPIVERLSERVYIPIYGKSESLNVAVAAGILMYGIRK 252


>gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 260

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 5/259 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +   N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+R
Sbjct: 3   ERTSVNNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALKA-SVKYREILATEAALSR 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMV 137
           L           +  +       +   +            +   ++       +    ++
Sbjct: 61  LAQLGLAYDEGKLIKISQSVASHLSSTKNSQDIFMTVKINMTVKINRPKHFAFSYGKWVL 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+      
Sbjct: 121 LDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIKADLPDA 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                 +       L   + K L       ++ALI+G E  G+ P+ +  A    ++ + 
Sbjct: 181 IASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIK 240

Query: 258 GIIKALNVSNAAAVALYIT 276
           G  ++LN + AA + +Y  
Sbjct: 241 GRAESLNAAVAAGIMIYHF 259


>gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 119/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A   A      L   LD +    LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L Q
Sbjct: 126 IAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 186 ADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 244

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++G+H V A L +   +  ++   K     RL             ++    + +D  V  
Sbjct: 6   IFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDKVKG 65

Query: 108 EAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +    +A               L   + S LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  ASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNADAAGAVAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++   + Q
Sbjct: 126 IVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+      +
Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRS 244


>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
 gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
          Length = 254

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTLT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 SK----DTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 248

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 7/243 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFP-VKTVPPQTID 102
           +     +YG + V   L      I ++    N    +L            V         
Sbjct: 4   EHSENIVYGRNAVLELLQQKPESIEKIYFQFNTSHPKLKEIVITARRLKLVSGKARLEKL 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            ++     HQG+    + +   +L+           LL+VL  ++DPHNIGAI+R+A A 
Sbjct: 64  SLIAGTTKHQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAV 123

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++  +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q +    +++
Sbjct: 124 AADAVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAE 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                       A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY   
Sbjct: 184 LNYTDADMKKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAM 243

Query: 278 NHF 280
              
Sbjct: 244 RQR 246


>gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
 gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
          Length = 322

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 111/247 (44%), Gaps = 12/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +     + G + V  AL    P+R ++       +   R           P+  V    +
Sbjct: 71  EEGAEIIAGRNPVVEALRADIPARVLYVAYRIDTDDRVREAIKIAADRDIPMVEVSRDRL 130

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++ G  AVHQG+ LE  P      D             L++ LD V DP N+GAI RSA
Sbjct: 131 DQLTG-GAVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTDPRNLGAIARSA 189

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   GI+   R S   ++   K+++G L  +P  R SNLT  L+     G   +GL  
Sbjct: 190 AAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYRKEGLFVVGLDG 249

Query: 215 DSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D+K+ +       + + L++G+EGKGL    +ET   +A + M   +++LN   AA +AL
Sbjct: 250 DAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVESLNAGVAAGIAL 309

Query: 274 YITQNHF 280
           Y      
Sbjct: 310 YEIARRR 316


>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 289

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 9/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                K  +   +++    +       G   V  AL  P   + +L  T  A +R     
Sbjct: 10  RSPRVKSARRLAKRT-FRHRERRFLAEGPQAVREALGLPG-VLTELFTTAEAESRHAELV 67

Query: 86  NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV  V  + + ++         L + T   +S          L+ VL HV D
Sbjct: 68  TAAERAGVPVLRVSGEVMAELAQTVTPQGLLGVCTFVDVSLADALSPPPTLVTVLAHVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR+A A  CD ++ T       +    ++++G+L H+P +  +     +  + 
Sbjct: 128 PGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHVPVVAGTRFETLIGALR 187

Query: 204 SWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G   +      +  L+  +     +   A + G E  GL  +       +  + + G 
Sbjct: 188 ECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEEILRAVDHVVRVPIYGR 247

Query: 260 IKALNVSNAAAVALYITQN-HFA 281
            ++LN++ AAAV LY +     A
Sbjct: 248 AESLNLATAAAVCLYASARAQRA 270


>gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
 gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
          Length = 250

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  ++G+H V + L +   +  ++ A K     RL       +     V+ V   T+DK 
Sbjct: 3   SELIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELNDIGISVQLVNRNTLDKK 62

Query: 105 VGKEAVHQGLALETAPLLSPT----------LDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                 H G+                     L+      LL++LD V DPHN+GA LRSA
Sbjct: 63  CD-GGRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   ++V+ K A GA E +P I ++NL   ++++       +G + 
Sbjct: 122 DAAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ + L Q      +A+ +GAE KGLR  T+E    +  + M G + +LNVS A  + L+
Sbjct: 182 EATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EVVRQR 247


>gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
            ++ +LYG+H + A +     ++ +L   K    +      +        V+    +T+D
Sbjct: 2   AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINTIINHARKFGIAVQFCQRKTLD 61

Query: 103 KIVGKEAVH-----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             V  E             +        +     +  L+VLD V DPHN+GA LR+A A 
Sbjct: 62  DKVNGEQHQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++ 
Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + Q      IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  V LY   
Sbjct: 182 QSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEIV 241

Query: 278 NHFA 281
              A
Sbjct: 242 RQRA 245


>gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 249

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           ++TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGHT-INKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+I+R+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGI+  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G  +D+
Sbjct: 119 SGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 YRKR 242


>gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
 gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
          Length = 242

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 7/237 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           LYG H V A L      +  +      ++A  +            +KT+  + +  + G 
Sbjct: 4   LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63

Query: 108 EAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +       Q   L T   +   LDAV  + L++ LD V DPHN+GAILR+A A     +I
Sbjct: 64  DRHQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLVI 123

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G   +G    +   +   
Sbjct: 124 APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYAA 183

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  L++GAEG G+R   +ET   +  + M G +++LNVS AA V LY      
Sbjct: 184 KWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
 gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  +YG+HTV A L     +  +    K     RL     +       ++ V  +T+D  
Sbjct: 3   SELIYGIHTVKALLEQAPERFLEAWVLKGRDDDRLQPLLAILQQYGVSIQYVQRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A+HQG+                       +   +VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S S +    K A GA E +P+I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 DVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
 gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
 gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 249

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   +            +  V  + +D++  + 
Sbjct: 8   IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVKTITREARKQDTIINYVAKERLDQLS-ET 66

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      ++ +            L +LD + DPHN+GAI+R+A      G
Sbjct: 67  GKHQGVIAFAAAYKYAEVEDILELAREKGEPPFLFILDGIEDPHNLGAIIRTANQAGAHG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+ + P  +++N++  ++++   G   +      +    
Sbjct: 127 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNISATIEELKEKGLWFVCADMGGELMYR 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  I L++G+EG G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 187 MN-LKGPIGLVIGSEGDGVSRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
 gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL +  R I ++   + A         D        V+ VP + +D++
Sbjct: 2   MEYIIGRNPVIEALKSG-RDINKIWIAEGAHRHAVEPVLDWAKRRGVIVQYVPKRKLDQM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              E  HQG+  + A      +D           +   +VLD + DPHN+GAI+R+A A 
Sbjct: 61  A--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAPFFLVLDELEDPHNLGAIMRTADAV 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +  +AK+++GA+EHIP  R++NL   + ++   G    G  + +K
Sbjct: 119 GAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLARTIDELKERGVWVAGTDAAAK 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 179 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 238

Query: 278 NHF 280
              
Sbjct: 239 RKR 241


>gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++      ++   +   +        V  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTLIEQAERAGRRVHPVPVERLDGLAR 65

Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                         + A  +   LD +     L++LD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   ++ + + A GA + +PYI ++NL   ++++   G   +G    +   +  
Sbjct: 126 IAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELKERGVWLVGTDDQASHDMHA 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
 gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
          Length = 247

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L      K++     +                 +   P +
Sbjct: 2   KTTKELSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L           + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTPSHKWNTA-GKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
 gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
          Length = 245

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + K                      + +H        + G H    A
Sbjct: 1   MEVIQSKQNASIKTAKKL-------------------LQRKHRKTS--YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             + +  I Q+   +    R+       +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  KVSGAH-ILQIFVLEEMADRV------ANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLLL--EDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R   L                  S+     +    +   AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 210 SKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
 gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
          Length = 242

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +        D        +     +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTSKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +       +A+        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+ AL K+   GF   G   +   
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 STKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L     KI+++L  +             H    K +P + +D ++  + 
Sbjct: 4   YVYGKNVVKQLLQEDK-KIYEILMAEGMRDTALEKLIKEHKITCKILPRKKMDGML--QG 60

Query: 110 VHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A +     +  L             L ++LD + DPHN+GAILR+      DG+I
Sbjct: 61  NHQGIAAKIDDYKTYELLELLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVI 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +AK ++GA++ +    ++NL  +++ +   GF  +G   ++ +   + 
Sbjct: 121 IGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSRDYREG 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + +++G+EG G+    ++       L M G++ +LN S A  + LY   N  
Sbjct: 181 QYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237


>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 259

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 101/258 (39%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++  +K +++ +  ++   +     L G+H V+A L+        L++ ++ A   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                  P  +  +      ++     V  G+ L             R     ++LD + 
Sbjct: 66  PLLARVDPQGIVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H     T   +  +   +     N  +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 HVPLLATSSHARHAVFDMP---LNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ L+      
Sbjct: 239 LNVAAAAAICLFEAVRQR 256


>gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
 gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
          Length = 248

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 9/244 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTI 101
           +     +YG + V   L N    I ++    N    +L           V T     + +
Sbjct: 4   EQSENVVYGRNAVLELLQNKPDTIEKIYFQFNTSHPKLKEILITARRQKVVTGKARLEKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVA 156
           ++I G  A HQG+    + +   ++D + +       LL++L  + DPHNIGAI+R+A A
Sbjct: 64  NQIAG-TAKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRTAEA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D ++  +      +A + K+++GAL H+   ++ +L   ++ +H  GF+      D+
Sbjct: 123 AAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAADMDA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            AL+LGAEG GL P+  +   S   + + G I++LNVS  A + LY  
Sbjct: 183 ELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILLYEA 242

Query: 277 QNHF 280
               
Sbjct: 243 MRQR 246


>gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
 gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
          Length = 252

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 16/245 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G + V  AL     ++ ++L  + A          A   H  PV+ VP   +D++   
Sbjct: 8   LVGRNPVREALEQEETRVEKVLLQEGAGGPALEAIRRAARAHGVPVQMVPKARLDRLAA- 66

Query: 108 EAVHQGLALETAPLLSPTLDA------------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            AVHQG+    AP+   TL+                  LL+ LD + DPHN GAILR+A 
Sbjct: 67  GAVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLVALDQIEDPHNYGAILRTAA 126

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  + +    +A   K+++GA   IP  R++NLT AL+ + + GF   G S  
Sbjct: 127 AAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLTRALESLKAHGFWVAGASPS 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + +   +  + L+LG EG+GLRP   +    +  + + G +++LNVS AA + L+ 
Sbjct: 187 GEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPLRGPVESLNVSVAAGILLFA 246

Query: 276 TQNHF 280
                
Sbjct: 247 ATRTR 251


>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 265

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  +P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFRLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           GB-1]
          Length = 248

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 246

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YG+H V+A L N   ++ ++   K     RL+   +        V+ V  QT+D     
Sbjct: 5   IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRLSISVQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       +++ LL++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I  K  S + +A+  K A GA E +P IR++N      +         +G + ++   + 
Sbjct: 125 IVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIWIVGTAGEATTDIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 TSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 255

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 102/252 (40%), Gaps = 4/252 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   KK+   NQK ++     +  + G H    A+    +  + +L T+ AL +++ D 
Sbjct: 8   NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIKAGKKYQY-ILGTEEALDKVNEDY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           NL        +  + I + +      Q + +                 +L+  D++ DP 
Sbjct: 66  NLELDGKNVILINKAIARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL--DNLADPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+            + 
Sbjct: 124 NVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIKRDLADAITDFQDAA 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 +   S K L+   K  ++ALI+G E  G+       +    ++ + G  ++LN 
Sbjct: 184 IPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNA 243

Query: 266 SNAAAVALYITQ 277
           + AA + +Y   
Sbjct: 244 AVAAGIMIYHFA 255


>gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 244

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +L G + V  AL        I+          +            V+ V  + I+K    
Sbjct: 3   YLVGRNPVMEALEMDMGVTNIYIQKGELKGFIKKIEKKAYDMGIRVEYVDKKYIEKFAEN 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  +       ++D +            L++LD + DPHN+G+I+R+A    C 
Sbjct: 63  TA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPHNLGSIIRTAEVAGCH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +        G   ++ +  
Sbjct: 122 GVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQTH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      I L++G EGKG+    +E    +  + M G  ++LN SNAA++ +Y      
Sbjct: 182 TQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241


>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 263

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 94/254 (37%), Gaps = 5/254 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK  S  QK ++  +     + GV  V   + + S  +     T   L       
Sbjct: 9   QNETVKKAASLQQK-KYRLREGLFLVEGVRAVRE-VRSSSWTVTAYFFTD--LPEDFQKE 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P   V    + K+   E     LA                  L++VLD ++DP 
Sbjct: 65  AQGSDIPYYEVTGDIMKKLTATEEPQS-LAALVRLKERSLETVHPERGLILVLDEIHDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A +  G+I     +   +  + ++A G L HIP          +      
Sbjct: 124 NVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGNLFHIPVFTGITEDALMTFAQKA 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+  +  + D    L       K  LI+G+E +G+     E + +   + M G  ++LNV
Sbjct: 184 GWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNV 243

Query: 266 SNAAAVALYITQNH 279
             AA + LY     
Sbjct: 244 GVAAGILLYEAMVQ 257


>gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 247

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNKSQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     + + + LL++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   +    K A GA E +P IR++NL   ++ +       I  ++   +  + 
Sbjct: 125 IVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 EAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 245

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +  A+       KI+      N L++            V  VP + + K+  + 
Sbjct: 7   IYGTRAIIEAIQAGKEIGKIYLQKGLSNPLSKELEKLIREQGISVSYVPQEKLYKLSDQ- 65

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG     +P+     +A            L ++LD + D  N GAI+R+AV    D 
Sbjct: 66  -NHQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K      +    K+++GA+ +IP  ++ ++ DAL  +   G Q +  +  ++  + 
Sbjct: 125 IIIPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   AL++G+EGKG+ P   +     A L M G I +LNVS A    LY       
Sbjct: 185 DLDYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244

Query: 282 K 282
           K
Sbjct: 245 K 245


>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 249

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               +VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVS--GQHQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 IYRKRS 245


>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
 gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
          Length = 265

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  +P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFRLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 253

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      D    +   VK V    I K+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQNGVVVKFVDKHKIYKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +            L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       ++  KP+
Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
 gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
          Length = 277

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 108/275 (39%), Positives = 166/275 (60%), Gaps = 8/275 (2%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNN 63
           ++ K    K S   +  R++   K+   + +K             + LYG+HTV AA  N
Sbjct: 3   ENTKSAGSKRSGPHRPSRDN---KRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFAN 59

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             RK  +L AT+NA  RL    ++    P++T+ P+ +DK+V ++AVHQG+ LE  PL +
Sbjct: 60  TERKRMKLYATENAQRRLAER-DVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPA 118

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              + ++ ++L++ LD V DPHN+GAILRSAVA   D ++TT+R++P E  VLAKSASGA
Sbjct: 119 YGPEHLKGARLVLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGA 178

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L+ I ++R+ N+   + +M    F  + L SD    LE+     K  L+LG+EGKG+R  
Sbjct: 179 LDMIKHVRVKNMARFVSEMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQG 238

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +E  +++A L MPG I++LNVSNAA +ALY+ + 
Sbjct: 239 VREACSTLARLDMPGEIRSLNVSNAAVLALYVARQ 273


>gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
 gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
          Length = 242

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 5/238 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +   ++G + V  AL +       ++A  + L +            ++ VP + I++  
Sbjct: 2   EDKFVIWGRNPVIEALRSGKELEKIMVAHDSHLPKELVKLAEKRKVKIQRVPRKKIEETA 61

Query: 106 GKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           G +     +     +      +     +  +   ++LDH+ DP N+G I+R+A      G
Sbjct: 62  GTKKTQGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNVGNIIRTAEVLGSSG 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  S   + V+ K+++GA+ ++P  ++ N+   + K    G   +       KP+ 
Sbjct: 122 IIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGGW-VISVEKGGKPIH 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        ++LG+EGKG+     E +  +  + M G I +LNVS AAA++L+     
Sbjct: 181 KVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238


>gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
 gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
          Length = 248

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
                +YG H ++A L    + I +L   +N   A  R   +        V       + 
Sbjct: 2   SNQRLIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLH 61

Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +  K A HQG+            L   L+ +R    L+VLD + DPHN+GA LR+A A 
Sbjct: 62  AMS-KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAM 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G      
Sbjct: 121 GVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L      + +A ++G EG+G+R  T+E   ++  + M G ++++N+S +A + L  T+
Sbjct: 181 ADLFHYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240

Query: 278 NHFA 281
               
Sbjct: 241 RQRI 244


>gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 261

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++    +KSR   +     + G   +  A+      I ++   +  +A    + 
Sbjct: 9   QNPTVKRLLQLQEKSRTRKKEGGFIIEGKREIELAI-AGGYTITEVYYDEQLIAPSSVEE 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     + ++  +   K+  +      +A   A   + +   +  + L++V +    P 
Sbjct: 68  LVGTKISLTSLATEVYKKVAYRGGTEGVIAFAKAKKTTLSELQLPVNPLILVTEAPEKPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR+A A +    +                +S        I   +  + +  +   
Sbjct: 128 NIGALLRTADAAA-VDAVIIANPKTDLYNPNIIRSSVGCVFTTQIATGSTEEVISFLQEK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                            +      A+++G E  GL P+ + T  +   + M G I ++NV
Sbjct: 187 DVAIYSAILQKAVDYATQAYTGGSAIVVGTEATGLSPEWR-TVGTNIKIPMRGKIDSMNV 245

Query: 266 SNAAAVALYITQNHFA 281
           S AA + ++  +   +
Sbjct: 246 SVAAGILIFEARRQRS 261


>gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter
           xylosoxidans C54]
          Length = 245

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++      ++   +   +        +  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAERAGCRLHPVAMERLDGLAR 65

Query: 107 KEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                         + A  +   LD +    LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   ++ + + A GA + +PY+ ++NL   ++ +   G   +G    +   + +
Sbjct: 126 IAPRDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHR 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 186 IDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810]
          Length = 246

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
 gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
          Length = 265

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
 gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
          Length = 254

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
 gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +N  ++GV  V  A+       K+      ++ L++  +        PV+ VP + I++
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKEIDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I   +  HQG+    +P+           L     + LL++LD + D  N GAI R+   
Sbjct: 63  IT--KKNHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +    D   +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 264

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 101/282 (35%), Gaps = 22/282 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS-- 58
           M  I  K                  +++  K + +  Q+ ++  +     + G+ ++   
Sbjct: 1   MEFIQSK------------------DNKTIKHIIALGQR-KNRQKSGEYIVEGIRSIRDI 41

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AA+      + +    ++         +         V     DKI       QG+    
Sbjct: 42  AAMGAVKTVVIRESKAQDKNVLDLLTLDSAQSAHTYIVQDPVFDKI-DNTVNGQGVVAIV 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +              L + LD V DP N+G I+R+AVA    GI   K      +    +
Sbjct: 101 SKPKHNIESVSIEDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S   AL  IP      L+     +      T   + ++ +P        +  L+LG EG 
Sbjct: 161 STMSALHKIPLYEDITLSMLHDIVAESNMTTYVTALENSEPYHSVNYAKRTMLVLGNEGN 220

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+ P+     T+   + M G +++LNVS AAA+ +Y  Q   
Sbjct: 221 GVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262


>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 265

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 289

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 98/292 (33%), Gaps = 32/292 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I SL+          +   K++     + R   +     + G   +  AL    R I 
Sbjct: 5   ERITSLQ----------NPRVKQLVKLRDR-RPRDEAGVFLVEGYRQIRRALEKNVR-IN 52

Query: 70  QLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--- 122
           +L  + +     +     D        V  +      K+  +E     LA+         
Sbjct: 53  ELYFSSDWFLGENEPALIDQAAAAGAQVIELSKDAFAKVAYRERPDGLLAVAPQWRHSLA 112

Query: 123 ------------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                        P  D    +  L+V++ +  P N+G ILRSA A   D +I       
Sbjct: 113 DLAARLDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVC-DPVT 171

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
                    AS  +     + ++   +  + +   G +++  +  +            +A
Sbjct: 172 DLFNPNVVRASTGVLFSVPVIVAGSGEVREWLRERGIRSVATTPSATTLHTDSDLRGPLA 231

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +++G+E  GL       A +   + M G   +LNV+ A  + L+      ++
Sbjct: 232 IVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQRSE 283


>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 254

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
 gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
          Length = 275

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 122/262 (46%), Positives = 163/262 (62%), Gaps = 1/262 (0%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           F  K     K  ++ R+ K+      + R +       LYG HTV AAL NP R I +LL
Sbjct: 4   FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            ++NA  RL  D N+    P + V P  ID+ +G +AVHQGL  E  PL  P LD +   
Sbjct: 64  LSENAARRLA-DENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + +
Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL  ++  GFQT+GL S+    L     +  +AL+LGAEGKGLR  T++T +++A
Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            L MPG IK+LNVSNAAA+ALY
Sbjct: 243 RLDMPGEIKSLNVSNAAALALY 264


>gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 245

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLAKEPERFVEAFVLKGRQDDRLMPILNELQMCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P           + A  ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 274

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 6/257 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    ++ +H        + G   +  AL         L+              
Sbjct: 8   NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYA 66

Query: 87  LPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    +  V    + K+  ++     +AL   P  +          L++V   +  
Sbjct: 67  ALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEK 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA A   + ++           V+    S  +        ++ ++ L  + 
Sbjct: 127 PGNLGAVLRSADAAGAEVVLVAGGVDLYSPQVIRN--STGVVFSLRTLAASESEVLDWIK 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  +  ++    +      +A+ +G E +GLR    E A +   + M G   +L
Sbjct: 185 QHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSL 244

Query: 264 NVSNAAAVALYITQNHF 280
           NVS +AA+ LY      
Sbjct: 245 NVSVSAALLLYEALRQR 261


>gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA LNN   ++ ++ A K     RL    N  H     ++ V  QT+DK    
Sbjct: 5   IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLGITIQFVNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P          TL   +++ LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   +A+  K A GA E +P IR++NL   L+++       +  ++       
Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 284

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 10/273 (3%)

Query: 12  IFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           IFS K S   ++    ++   K ++S     R   + +   + GV  V+ AL   +    
Sbjct: 15  IFSAKKSGMRRMISSTHNAHVKYLRSLCADPRERRREQRFVIEGVRLVAHALAVGAELCV 74

Query: 70  QLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            L    +  A     A L H    P      +            QG+    A       +
Sbjct: 75  VLYNPDSLRATPAGSALLEHLLTRPGCFAANEVAISAATDTRTPQGVVAAMAWP-----N 129

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L ++LD + DP N+G +LRSA A     ++     +   +  + ++A GA  ++
Sbjct: 130 LAPQPGLGLILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCADPFAPKVVRAAMGAHFNL 189

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P     +  D   ++ +        ++D+  P  Q   N   ALI+G+E  GL       
Sbjct: 190 PLRHDLSWEDIGAEV-ADLPVVYAAAADAAMPYYQADWNQPAALIIGSEAHGLSAAGMAL 248

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           AT    + M G  ++LN + A +V L+      
Sbjct: 249 ATQYLAIPMQGRAESLNAAVAGSVMLFEALRQR 281


>gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
 gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
          Length = 254

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
           + +++G + V  AL +  RK+ ++   K  L             +   +  +    ++ +
Sbjct: 11  SDYIFGRNAVLEALESD-RKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKHKLENM 69

Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +  VHQG+    +     T++              L++LD + DPHN GAI+R+  A 
Sbjct: 70  A-EGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRTCEAV 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII +KR     ++++ KS++GA+ HI   +++N+ D + K+        G   +++
Sbjct: 129 GVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGACGEAE 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K          IA+++G EGKG+    ++    +  L M G + +LN SNA A+ +Y   
Sbjct: 189 KIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEAL 248

Query: 278 NHF 280
              
Sbjct: 249 RQR 251


>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
 gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
          Length = 246

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKEQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas
           putida BIRD-1]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++ + +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 263

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 92/251 (36%), Gaps = 5/251 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83
           +   K +++ + + +   +       G+  V  A++        +     A     +   
Sbjct: 11  NATVKAVRALHMR-KEREESGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAV 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A L     V  V  + ++K+  ++     +A+        T     ++   + +  V D
Sbjct: 70  AACLKAGGEVIEVNREILEKVSRRDNPQAVVAVFRQVFTPLTAIVPESAPCWVAMQAVRD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A  C G+I         S    ++  G++     I  + + + L    
Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKATIPEFLAWRE 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +W    +G    +    +         +++G E +GL P+          + M G   +L
Sbjct: 189 TWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 248

Query: 264 NVSNAAAVALY 274
           N+S A  + +Y
Sbjct: 249 NLSVATGIMIY 259


>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 261

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 8/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K++ +    +R         L G H V AAL+     + +L+A+   L R + 
Sbjct: 6   SRDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDAGW-PLRELVASDQGLGRAEI 64

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L      P   +       +   +       L     L         ++ L+VLD V
Sbjct: 65  ADLLERCTGVPAIHLTDALFAHVSPVDTP---SGLLAVIDLPVPPPTRAFAESLLVLDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G ILR+A A     ++ T   + + S  + ++  G   H       +   A+  
Sbjct: 122 QDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAGMGG--HFCLRLYEHADVAVLL 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G           + L +      +A + GAEG+GL       AT    + MPG ++
Sbjct: 180 QGYPGQILATGLGAGARGLYEMDLRGTVAWLFGAEGRGLSMAVAALATDTVVIPMPGAVE 239

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ AAAV L+      
Sbjct: 240 SLNVAAAAAVCLFEQVRQR 258


>gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 286

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+E++P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEYVPVARVTNLIQAVQQLKEIGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
 gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
          Length = 286

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EH+P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
           29413]
          Length = 327

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95
            +   + E+  +YG H V +AL N  R + ++  T     +            +   +  
Sbjct: 65  PKVKEENESDIIYGRHPVLSALEN-QRGLNRIWVTPRLRYDPRFHNLILQAKENGAVIDE 123

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGA 149
           V P+ +D+I   +A HQG+A + AP                   +++V D + DPHN+GA
Sbjct: 124 VEPKRLDQITD-QANHQGIAAQIAPYSYIEFYELIAQAKSVTDPVIIVADGITDPHNLGA 182

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G++  +R +   ++ + K A+GALE+ P  R+ NL+ AL+ +   GF  
Sbjct: 183 IIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEAGFWI 242

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G ++   +PL        I L++G+EG+GL   TQ +   +  + + G   +LN S AA
Sbjct: 243 YGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAA 302

Query: 270 AVALYITQNHFA 281
            +ALY      +
Sbjct: 303 GMALYEIFRQRS 314


>gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866]
          Length = 246

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+       H+     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 256

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 11/253 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVK 94
            K+     P +  +YG+H V++ L N   ++ ++   K    +      +        V+
Sbjct: 2   TKNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQ 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            V  QT+DK    E VHQG+                 L   + + LL+VLD V DPHN+G
Sbjct: 62  FVNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGF 207
           A LR+A A     +I  K  S   +++  K A GA E +P IR++NL         +   
Sbjct: 121 ACLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNI 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + ++ + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS 
Sbjct: 181 WVVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSV 240

Query: 268 AAAVALYITQNHF 280
           A  V L+      
Sbjct: 241 ATGVCLFEIVRQR 253


>gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
          Length = 309

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALA 79
           LR NH   K+ QS   +    +      L G + V   L     +  ++  L T+ +   
Sbjct: 43  LRPNHPAAKRNQSSPHRPVKRTDETETVL-GRNPVLECLRAGVPATALYVALGTEVDKRL 101

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133
                        +  VP   +D+I     +HQG+AL+  P      D            
Sbjct: 102 TESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSPPA 160

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD+++DP N+GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R +
Sbjct: 161 LLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARAT 220

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT AL+     G + IGL  D    L+     D +A+++G+EGKGL    + +   +  
Sbjct: 221 NLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVS 280

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN S A  V L       
Sbjct: 281 IPMAGQVESLNASVAVGVVLAEIARQR 307


>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
 gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923]
 gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
 gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
          Length = 278

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALA 79
           LR NH   K+ QS   +    +      L G + V   L     +  ++  L T+ +   
Sbjct: 12  LRPNHPAAKRNQSSPHRPVKRTDETETVL-GRNPVLECLRAGVPATALYVALGTEVDKRL 70

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133
                        +  VP   +D+I     +HQG+AL+  P      D            
Sbjct: 71  TESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSPPA 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD+++DP N+GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R +
Sbjct: 130 LLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARAT 189

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT AL+     G + IGL  D    L+     D +A+++G+EGKGL    + +   +  
Sbjct: 190 NLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVS 249

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN S A  V L       
Sbjct: 250 IPMAGQVESLNASVAVGVVLAEIARQR 276


>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
          Length = 249

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +   +YG++    AL   SRKIF+L     + +               PV+      ++
Sbjct: 2   SKEEIIYGLNPAMEALR-GSRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLN 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++ G E  HQG+AL+  P     LD          + L++VLD V DPHN+GA++RSA  
Sbjct: 61  RLCGTE-HHQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              + ++  K  +   +AV+ K+++GA E +   +++N++ AL+ +   GF   G    +
Sbjct: 120 AGANAVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  L Q+     +AL++G EG+G+RP  ++    +  + + G + +LN S A  + L+  
Sbjct: 180 KHTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
 gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
          Length = 260

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 9/252 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
           N +S +      L + G + V  A  +     K+F L   ++   R        H   + 
Sbjct: 8   NNRSENGQIENTLIIEGRNAVLEAFRSGKPIDKVFILDGCQDGPIRTIVREAKKHDTILN 67

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIG 148
            V  + + ++         +A   A   +   D  +           ++LD++ DPHN+G
Sbjct: 68  FVEKERLAQLSETGKHQGVIAYAAAYEYAEIEDMFKLAEEKGEDPFFILLDNIEDPHNLG 127

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G  
Sbjct: 128 AIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLW 187

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +      +   +       I L++G EG+G+    +E    +A + M G I +LN S A
Sbjct: 188 FVCADMGGESMYKMN-LTGPIGLVVGNEGEGVGRLVKEKCDFVAAIPMKGEIDSLNASVA 246

Query: 269 AAVALYITQNHF 280
           A V  Y      
Sbjct: 247 AGVLAYEIVRQR 258


>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
 gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
          Length = 265

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDRNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
 gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
          Length = 272

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 101/259 (38%), Gaps = 8/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLD 82
           ++   K +   N+ SR   + +   + G+         P   + ++  +++A       D
Sbjct: 12  SNPKVKMLNKLNKDSRLRRERDVFIVEGIRMFREI---PVDSVDEIYMSESAYAEYCDED 68

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               L +   V  +       +   +        +         +    ++   ++LD +
Sbjct: 69  DLQELYNAAEVTVMSDSVFAGVSQTKTPQGCMAVVRCFHYEMTDIAGSTDTATYLILDTI 128

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I RSA A    G+I         +  + +S  GA+  +P+++  +L   +  
Sbjct: 129 QDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVRSTMGAIFRVPFVQSDDLIYTIDA 188

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G    G   D ++  + E   DKIA ++G EG GL     +TA  +  + M G ++
Sbjct: 189 LKRKGVLIYGAHLDGEELYDTE-FPDKIAFLIGNEGNGLSKAVSDTADRLLRIPMEGKVE 247

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + +A +  Y      
Sbjct: 248 SLNAAISATLLSYEAMRQR 266


>gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
 gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
          Length = 255

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 11/253 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKT 95
            +    +    L + G + V  A  +     K+F L   ++   R        H   +  
Sbjct: 4   NRKEFDNTEHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPVRTIVREAKKHDTIINF 63

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           V  + + +I      HQG+    A      ++ +            L++LD++ DPHN+G
Sbjct: 64  VGKERLSQIS-VTGKHQGVIAYAAAYEYSEVEDMLKLAEERGEDPFLILLDNIEDPHNLG 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G  
Sbjct: 123 AIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLW 182

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +       + + +      I L++G EG+G+    +E    +A + M G I +LN S A
Sbjct: 183 FVCA-DMGGESMYRLNLKGPIGLVIGNEGEGVGRLVKEKCDFVASIPMKGEIDSLNASVA 241

Query: 269 AAVALYITQNHFA 281
           A V  Y       
Sbjct: 242 AGVLAYEIVRQRT 254


>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 315

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 14/281 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70
             +  H  K R  +   K+ Q     ++   +  +  + G + V  AL +         Q
Sbjct: 36  EARKGHV-KNRLANAKAKQTQRRTTAAKGRGRSSSELVVGRNPVFEALRDGVPATALYVQ 94

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153

Query: 130 RN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 154 PAAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  + +    +  + +++G+EGKGL 
Sbjct: 214 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 274 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 314


>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 285

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 125/285 (43%), Gaps = 13/285 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +  K F  +++   K     +  ++     +      + +   + G       L +  R 
Sbjct: 3   RDNKNFGKRNNQPNKQSFTKKPARQTVKPVEDRVEEQETDRDLVAGRLPAIEVLKS-ERD 61

Query: 68  IFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
           I ++   +    +      +        +  VP   +D++V     HQG+ +  +     
Sbjct: 62  INKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVDGM-NHQGVVVAASAFQYA 120

Query: 125 TLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T+D               ++LD V DPHN+G+I+R+A A    GII  KR +   +A +A
Sbjct: 121 TIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVA 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EH+P  R++NL  A++++   G    G   + +   + E     I L++G EG
Sbjct: 181 KASTGAIEHVPVARVTNLVQAIKELKERGLWLYGTDMEGQDYRQWET-TLPIGLVMGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KG+    +E    M  + M G +++LN S AA++ +Y       K
Sbjct: 240 KGISRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGRNK 284


>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
           894]
          Length = 296

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 142/267 (53%), Positives = 185/267 (69%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        +   +  + +           LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ DA      P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEIDAETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
 gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YG + V   L      + ++    N    +L           +       ++K+    
Sbjct: 9   LVYGRNAVLELLREKPESVEKIYFQFNTSHPKLKEIIITARRQKI-VTGKARLEKLSLIA 67

Query: 109 AV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+A   + +   T++        ++ LL+VL  ++DPHNIGAI+R+A A + DG
Sbjct: 68  GTTKHQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADG 127

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +      +AV+ K+++GAL H+   ++ +L   L+ +H  G Q +    +++    
Sbjct: 128 VVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAETNYT 187

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A++LGAEG GL P+  E    +  + M G +++LNVS +A V LY      
Sbjct: 188 DADFRKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMRQR 246


>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
           PSI07]
 gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum PSI07]
          Length = 259

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 105/258 (40%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++  +K +++ +  ++   +     L G+H V+A L+        L++ ++ A   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVV 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                  P  +  +      ++     V  G+ L             R     ++LD + 
Sbjct: 66  PLLARLDPQHIVLLADSLFAQLT---TVVNGIDLMVLIDTPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H      +  SS +++ +     +  +  +LG EG G+  +     T+   +  PG +++
Sbjct: 183 HVPL---LATSSHARQAVFDVPLHKPVGWVLGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ L+      
Sbjct: 239 LNVAAAAAICLFEAVRQR 256


>gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G H V  A+       KI      K    +            V+TVP   +D +   
Sbjct: 5   IIVGRHAVKEAIVTGHTINKILIQEGIKKQQIKEILTNAKTQKLVVQTVPKSKLDHMSD- 63

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+A   AP      +     Q        +++LD + DPHN+G+ILR+A A   D
Sbjct: 64  -APHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPHNLGSILRTADATGVD 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S + + ++AK+++GA++HIP +R++NL+  +  + + GF  +G  +D+    
Sbjct: 123 GIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAHGFWIVGTEADNATDY 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  +A+++G+EG+G+    ++       + M G + +LN S AA + +Y      
Sbjct: 183 RDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEVYRKR 242


>gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 12/260 (4%)

Query: 34  QSFNQKSRHTSQP-ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH-- 89
           +    +            + G + V   L          +        RL     L    
Sbjct: 66  RGAAGRPAGRKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTENDERLTESVKLAADT 125

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142
              +  VP   +D++     +HQGLAL+  P      D             LL+ LD+++
Sbjct: 126 GISILEVPRTDLDRMSS-NGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNIS 184

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+  
Sbjct: 185 DPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDW 244

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + G Q +GL +     L++    D   +++G+EGKGL    +ET  S+  + M G +++
Sbjct: 245 ANQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVES 304

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN S AA V L        +
Sbjct: 305 LNASVAAGVVLSEIARQRRR 324


>gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
 gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
          Length = 245

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   ++ V  + +D++    
Sbjct: 8   IEGRNAVIEAFRSGKTIDKLFVLDGCQDGPVRTIIREAKKHDTLLQFVTKERLDQMSETG 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +    +A   A   +   D ++       +  L++LD + DPHN+GAI+R+A      G+
Sbjct: 68  SHQGVIAYAAAYEYAEVDDILKIAEEKGEAPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +     +  P+  
Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLAKTIEELKQKGIWFVCA-DMNGTPMYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G+EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 187 LDLKGPIGLVIGSEGEGVSRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIVRQR 244


>gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter
           eiseniae EF01-2]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L      + ++      ++A  R   +        +       I K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPESVIEIYHEATRRDARMRQFLERARAAGARLIEADGMRIAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A         +LD              LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG   D+  
Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIGTCDDAPG 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG G+R +T++T   +A + M G +++LNVS A+ + LY    
Sbjct: 186 TLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEALR 245

Query: 279 HFA 281
             A
Sbjct: 246 QRA 248


>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 281

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK      KSR   +     L G   +  AL   +  I  L   K+ ++      
Sbjct: 25  QNPLIKKTLVLKDKSRERKKSNLFVLEGARELQLALK-GNYSIETLFFCKDLISEQAITD 83

Query: 86  NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVN 142
            + +     V  V      KI  +      +A +++       L       L+++ +   
Sbjct: 84  LIKNNSTTNVIEVNLDVYQKIAYRATTEGVVALVKSKNHTINNLQLSSKKPLILIAEAPE 143

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGA+LR+A A + D +I                +S        I     ++ +  +
Sbjct: 144 KPGNIGALLRTADAANLDAVII-ANPKTDLYNPNIIRSSVGCVFTTKIATGTTSEIIAYL 202

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T   +  + K           A+++G E  GL  +    +     + M G I +
Sbjct: 203 KEHNIATYCAALTASKIYTTVDYTSGSAIVVGTEATGLSKEWLSNSNQNIIIPMEGQIDS 262

Query: 263 LNVSNAAAVALYITQNHFA 281
           +NVS AAAV ++  +   +
Sbjct: 263 MNVSVAAAVVIFEAKRQRS 281


>gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
          Length = 286

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKRTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         + +   ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+E++P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
 gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
          Length = 244

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +L G + V  AL        ++          +            V+ V  + I+K    
Sbjct: 3   YLVGRNPVMEALEMDMGVTNLYIQKGELKGFIKKIEKKAYDMGIKVEYVDKKYIEKFAEN 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  +        +D +            L++LD + DPHN+G+I+R+A    C 
Sbjct: 63  TA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPHNLGSIIRTAEVAGCH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +        G   ++ +  
Sbjct: 122 GVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQTH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      I L++G EGKG+    +E    +  + M G  ++LN SNAA++ +Y      
Sbjct: 182 TQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241


>gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SS3/4]
          Length = 248

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     ++F L   ++   R        H   V  VP + +D +    
Sbjct: 8   IEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVRTIVREAKKHDTIVNFVPKERLDSMSETG 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D ++          L +LD + DPHN+GAI+R+A      G+
Sbjct: 68  HHQGVMAYAAAYEYAEVEDILKIAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +A++++GAL + P  +++N+   ++ +   G   +       + + +
Sbjct: 128 IIPKRRAVGLTATVARTSAGALNYTPVAKVTNMAATIEDLKKRGIWFVCA-DMGGESMYR 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E    +A + M G I +LN S A  V  Y      
Sbjct: 187 LNLTGPIGLVIGNEGEGVSRLVKEKCDMIASIPMKGDIDSLNASVATGVLAYEIVRQR 244


>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
           107932]
 gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
           43255]
 gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-32g58]
          Length = 245

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A   K    +            ++ V    +D++    
Sbjct: 4   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD               ++LD + DPHN+G+I+R+A A    G
Sbjct: 64  S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G           +   
Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240


>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
 gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
          Length = 261

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 4/260 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L   +   K+ +   QK ++    +   + G H V  A+ N ++ I  +L T       +
Sbjct: 5   LSTKNILIKEWRKLQQK-KYRQDQKKYIVEGFHLVEEAI-NTNQSIESILLTSKGKMEWE 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     +  V  + +  +       QG+    A      +  +      ++LD++ 
Sbjct: 63  EWLLDKDFSQIIIVSEEVMHYLSKLP-TPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A A    G+I  +  +   S    +S  G+  H+  +  S      Q  
Sbjct: 122 DPGNVGTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSILHASLPAVLSQFQ 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      +       Q        L++G EG+G+          + H+ M G  ++
Sbjct: 182 EKEIPVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASES 241

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ AA + ++  +    K
Sbjct: 242 LNVAVAAGILIFHFE-QIKK 260


>gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 247

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V        +A           D         +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  VEGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 122 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 SLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
 gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
          Length = 260

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++ +++  D V 
Sbjct: 65  QAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
 gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
          Length = 286

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 4/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +   +       G+  V  AL         + A       L   A 
Sbjct: 24  NPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALELGWTISTLVYAKAAKGKPLVEQAA 82

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +        V  V  + I  I  ++     + +                +  + LD V D
Sbjct: 83  VKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVRD 142

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+I     +   S    ++  G++   P  R S       K  
Sbjct: 143 PGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARASVEEFLSWKKS 202

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +         + S    + +     + L++G E  GL P+    A  +A +   G   +L
Sbjct: 203 ANVSVVATHLAGSVDYRKIDYAGKPVVLLMGNEQSGLPPELAGRADQLARIPQQGRADSL 262

Query: 264 NVSNAAAVALYITQNHF 280
           N++ A AV L+  + H 
Sbjct: 263 NLAIATAVMLFEARRHL 279


>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
          Length = 246

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  +YG+H+V+A +     +I ++   K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLGLSIQEMGRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P  +                LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        +A+++GAEG G+R  T++T   +  + M G + +LNVS A  + L+    
Sbjct: 182 DLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
 gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
          Length = 286

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+E++P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
 gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
          Length = 245

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+N      KIF     K  L R   +        +  VP + ++++   +
Sbjct: 7   IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLT--K 64

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     +         + + L ++LD ++D  N GAI+R+A     DG
Sbjct: 65  NNHQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  +++++ DA+  + + G + I  S  ++  + 
Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+I+G+E  G+ P   + A   A L + G I++LNVS A  V LY      
Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLYEAVRQR 243


>gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
 gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
          Length = 286

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EH+P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 264

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANL 87
           K      + +   +       +G H V A L++    + QL       +   R   +   
Sbjct: 7   KHAPGRKRDAGDRNLHAATTAWGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAA 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHV 141
            H  PV T  P  ++  + +E  HQG+         PTL+        + +QLL+ LD +
Sbjct: 67  RHGIPVHTEIPADLN--LEEEISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSI 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI+R+A AF  DG++  K  S   +  + K+A+G L  +   R++NL+ +L +
Sbjct: 125 QDPRNLGAIIRTAAAFGADGLLIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQ 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G    + + L Q   +  I L++G E KGLRP        +  + M   ++
Sbjct: 185 LKKHGFWIYGAGGQAPQQLHQTSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVE 244

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ A  V L   +    
Sbjct: 245 SLNVAVATGVILSEIRRQQN 264


>gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 261

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + S  QKS+   +     + G   ++ A+      I QL      L++ + + 
Sbjct: 8   QNPLIKHLYSLTQKSKLRREQREFLIEGRRELTLAIEAGY-LIKQLFFCSAILSQEEVEK 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  +  +  +   K+  + +    LA  +T       L   + + L+++ +    P
Sbjct: 67  QFA-GEKLTEISMEIYQKLSYRSSTEGILALAQTKDHFLSELTFHKENPLILIAEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A   D +      +   +  + +S+ G L  +P    S   + L  +  
Sbjct: 126 GNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSSVGTLFTVPIATASTK-EILSFLQK 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             F     +  +  P +      + A+++G E  GL P+    ++    + M G I ++N
Sbjct: 185 ENFTIYCAALSASVPYDSVSYRGRTAIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMN 244

Query: 265 VSNAAAVALYITQNHFA 281
           VS +AAV ++       
Sbjct: 245 VSTSAAVLIFEAVRQRK 261


>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
 gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
          Length = 265

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYMVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPTGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILTKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 287

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSR 66
           EK    +     K R    D +K  +   Q+   ++Q E     + G + V  AL    R
Sbjct: 3   EKRQPNRKPRDFKGRDKKADTFKTHEKKQQEKPQSAQEELSGEMIAGKNPVLEALRAG-R 61

Query: 67  KIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           +I +L   +       +   D        V+ VP Q +DK+      HQG+    A    
Sbjct: 62  EINKLWIAEGVKKTGVQELMDLAKEQGVLVQFVPKQKVDKLAE---NHQGIVASVAAYDY 118

Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             LD               ++LD + DPHN+G+I+R+A A    GII  KR +   +AV+
Sbjct: 119 AELDDLFAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVV 178

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+++GA+EH+P +R++NL   + ++   G    G  +       +      +ALI+G+E
Sbjct: 179 AKASTGAIEHVPVVRVTNLAQTVDELKDRGVWIAGTDAKGSADYRKMDATLPLALIIGSE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GKG+    ++    + HL M G + +LN S AAA+ +Y      
Sbjct: 239 GKGMSRLLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKR 282


>gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 242

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ AL      + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ +  F   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   K  K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 TVYSKWNTK-GKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 253

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH + A L +  +++  +   +     R+    +L     V     +  +     E 
Sbjct: 7   IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245


>gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
 gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
          Length = 246

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAVQAGKD-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     + L ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + S GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 254

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEVIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4]
          Length = 249

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTI 101
            E+  + G + V  A  +    I +L   +         +  +A       +  V  + +
Sbjct: 2   EESRIVEGRNAVLEAFRSGKT-IDRLFVLEGCKDGPVQTILREAKKSKDTVISFVKKERL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++  +   HQG+    A      LD +            L++LD++ DPHN+GAI+R+A
Sbjct: 61  DQLS-ETGKHQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G++  K  +   +A +AK+++GA+ + P  +++N++  ++++   G   +    
Sbjct: 120 NQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCA-D 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +        I L++G EG G+    ++    +A + M G I +LN S A  V  Y
Sbjct: 179 MGGTTMYDLNLTGSIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238

Query: 275 ITQNHFA 281
                  
Sbjct: 239 EVVRQRI 245


>gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3]
          Length = 272

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 96/257 (37%), Gaps = 3/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83
            +   KK+ +  ++ +   +     + G      A+    + +         +       
Sbjct: 11  QNPQIKKVSNLRER-KWRKKYGEFLVEGTREQEKAIAFGFQVLELYFCPSFLSDKGEEIL 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           ++       +  +     +KIV ++++   + +    L +     V+ +  L++++ V  
Sbjct: 70  NSIKDPKVSIYELTEPCFNKIVVRQSLDGIVLVMKPKLKALEDFPVKQNPFLLLIESVEK 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LR+A     DG++  +      +  + +S+ G    +P    S          
Sbjct: 130 PGNLGALLRTADGSGVDGVLVLESQIDLYNPNVIRSSLGCCFSLPIAMCSREEAYAFCKE 189

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                   + S++    +        A++LG+E KGL P     A  +  + M G   +L
Sbjct: 190 RKIAIHAAVLSNASVYYDTVNYPSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEADSL 249

Query: 264 NVSNAAAVALYITQNHF 280
           NVS A AV LY      
Sbjct: 250 NVSAAGAVLLYEVSRRR 266


>gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84]
 gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
          Length = 286

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 90/257 (35%), Gaps = 4/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  AL         + A       L     
Sbjct: 24  NPIIKDIKALTNK-KSREESGAFLAEGLKLVIDALELGWTIRTLVYAKAAKGKPLVEQVA 82

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + I  I  ++     + +             +  +  + LD V D
Sbjct: 83  AKTVAAGGLVLEVSEKVIASITRRDNPQMVVGIFDQRWRPLRDVRPKAGETWVALDRVRD 142

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G+I     +   S    ++  G++  +P ++ +       K  
Sbjct: 143 PGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPVVKATPEEFLAWKKT 202

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +         + +      + K   + L++G E  GL     + A ++A +   G   +L
Sbjct: 203 AGVSVVATHLAGAVDYRTIDYKKKPVVLLMGNEQSGLPDALAKEADALARIPQAGRADSL 262

Query: 264 NVSNAAAVALYITQNHF 280
           N++ A AV L+  + H 
Sbjct: 263 NLAVATAVMLFEARRHL 279


>gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
 gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
          Length = 244

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 8/237 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L+    ++ ++   K     RL    N        V+ V  Q +D     
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKAQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       + +  L++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   ++   K A GA E +P IR++NL   ++++       +G + ++ + L Q
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLYQ 184

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 VKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241


>gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 253

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 26/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ KI + K     K +R                   +     L G H V  A
Sbjct: 1   MEYIQSNQNTKIKAAKKLTVKKNQR-------------------KENTYLLEGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N +  I Q+ AT+  +            F +       + + + +    QG+      
Sbjct: 42  IQNKA-VIRQVFATEKYVDERALRGLYDDTFEI----APEVAQHLSETKAPQGIFAVVEM 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +P  + +    LL+  D V DP NIG ++R+A A    G++         +  L +S 
Sbjct: 97  SETPMPEKLTGRYLLL--DAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  + + +    +             +      +   K   +ALILG EG G+
Sbjct: 155 QGSHFHLPIYQGNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNGV 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   T   ++ +PG  ++LNV+ AA + ++
Sbjct: 215 AKDVLAATTQNLYIPIPGNAESLNVAVAAGILMF 248


>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
          Length = 245

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIGVSIQQMNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P      +            LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G    G + ++  
Sbjct: 122 VAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIAGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q   +  +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 248

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133]
          Length = 248

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
 gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
          Length = 246

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 244

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 8/237 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L+    ++ ++   K     RL    N        V+ V  Q +D  V  
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKVQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       + +  L++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   ++   K A GA E +P IR++NL   ++++       +G + ++ + L Q
Sbjct: 125 IVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLYQ 184

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 VKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241


>gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
 gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
          Length = 247

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103
           +  ++ G + V  AL    R+I ++   + +     +   +        V+ VP + ID+
Sbjct: 2   DQEYIAGKNPVLEALRAG-REINKIWIAEGSQKGAMKQVIELARERKVTVQFVPKKKIDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    A                      +++LD + DPHN+G+ILR+A A
Sbjct: 61  VAD--GAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S + +A +AK+++GA+EHIP  R++NL+  +  +   G    G  +  
Sbjct: 119 VGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLWIAGTDASG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q   +  + L++G+EGKG+    +E    +  L M G + +LN S AA + +Y  
Sbjct: 179 TTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 YRKR 242


>gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
 gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
 gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
           [Clostridium difficile]
 gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
          Length = 248

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A   K    +            ++ V    +D++    
Sbjct: 7   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD               ++LD + DPHN+G+I+R+A A    G
Sbjct: 67  S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G           +   
Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243


>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
          Length = 254

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKVG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPESIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALADGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150]
 gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150]
          Length = 250

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R   +L      ++   +   D  +     ++ V    +++   
Sbjct: 5   YVYGLHAVSALLANPHRMTKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHKMNQRFA 64

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                  +A  ++            L++ ++  L+++LD + DPHN+GA LR+A A   D
Sbjct: 65  DFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S + V++K A GA E +P +R++NL  +++ +   G    G + ++   L
Sbjct: 125 FVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAGEATGTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      IA++LGAEG+GLR  T+E   S+  L M G + +LNVS A  V+LY      
Sbjct: 185 YQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQR 244

Query: 281 A 281
            
Sbjct: 245 K 245


>gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
 gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
          Length = 244

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V   L      +F+L       +A A+            +     + +D +VG
Sbjct: 5   LIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDGMVG 64

Query: 107 KEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+                L+ +  + L++VLD V DPHN+GA LR A A     
Sbjct: 65  TRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVGAHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  +   +A   K ASGA + +PY+ ++NL  AL++M   G   +G + +++K + 
Sbjct: 124 VVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEKSVY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ + L+  +   
Sbjct: 184 EVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARRQR 242


>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 246

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+ A LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
 gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
          Length = 284

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 94/255 (36%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDW 83
           +   K +++  QK +H  +       G+  V  AL+        ++A     +AL     
Sbjct: 26  NPIVKDIRALVQK-KHRDETGLFLAEGLKLVIDALDAGWEIETLVVARAAQDSALLHKTA 84

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +     + ++ I  ++     + +     +     A + +++L+ LD V D
Sbjct: 85  SRTVALGADLIEANHKVLEAITRRDNPQNAVGVFRKKTVPLERLAPKPNEVLVALDRVRD 144

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A A    G++         S    ++  G++  +P  R+        +  
Sbjct: 145 PGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMGSIFAVPVSRVGEAAFIEWRAG 204

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                     S +    + +  +    L++G E  GL         ++  +   G   +L
Sbjct: 205 CRAPLIGTHMSGATDYRKPDYASKGSVLVMGNEQAGLTDALANACDTLVRIPQVGRADSL 264

Query: 264 NVSNAAAVALYITQN 278
           N++ A  V L+  + 
Sbjct: 265 NLAVATGVMLFEARR 279


>gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 249

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  F+ G + V  AL       KI+    +                  ++  P + ++++
Sbjct: 2   KQEFILGKNPVIEALRAGHAINKIWIAEGSNKGQMTKVVQLAKEQGVLIQNAPKKKLEQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V   + HQG+    A      +D               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  VD-SSNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPHNLGSIMRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +  +AK+++GA+E+IP +R++N+   +  +   G    G  +   
Sbjct: 121 GAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKRGLWFAGTDAKGS 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               Q   +  I L++G+EGKG+    +E    +  + M G + +LN S AA++ +Y   
Sbjct: 181 ADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEVY 240

Query: 278 NHF 280
              
Sbjct: 241 RRR 243


>gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 273

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 25/286 (8%)

Query: 1   MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           M    I+  +++ +      H  KLR                R   + +   L G   ++
Sbjct: 1   MEFVKITSTQNDSVK-----HVIKLR--------------DRRPREKEQLTVLEGYRELT 41

Query: 59  AALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            A       +    A ++ L + ++            V  V P  ++K+  +E     +A
Sbjct: 42  RAREYGMEIVEVFFAPEHFLGQNEFPLLETFASEGVKVCQVAPFLLEKMAYRERPEGLIA 101

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +      +     VR + L +V + V  P N+G++LRSA A   DG I   + +   +  
Sbjct: 102 IAKMKRHTLAEMPVRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPN 161

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++++GAL     +  +   +A   +     +T+  +  + +          +A+++G 
Sbjct: 162 VIRASTGALF-SVPLAEAENQEAYDWLKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGT 220

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           E  GL     E +     + M G I +LNV+ A  + LY       
Sbjct: 221 EQTGLTELWMEHSDLPVRIPMLGKIDSLNVATATTILLYEAARQRN 266


>gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 247

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   V  V  + +D+I    
Sbjct: 8   IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNYVARERLDQISETG 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D ++          L++LD + DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GAL + P  +++NLT A++ +   G   +         + +
Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLTAAMEDLKKKGMWFVCA-DMGGDIMYK 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 187 VNLKGPIGLVVGNEGEGVGKLVREHCDMTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 248

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315]
 gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2]
 gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus
           04-02981]
 gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11]
 gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 248

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 335

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 12/266 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARL 81
           +    ++        +     +N  +YG H V +AL N  R + ++  T     +     
Sbjct: 59  DSAPIRQYSDSAPIPKPQEDNDNDIIYGRHPVLSALQN-QRGLNRIWVTPRLRYDPRFHN 117

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLL 135
                  +   +  V  + +D+I   +A HQG+A + AP     L             ++
Sbjct: 118 LILQAKDNGAVIDEVDTKRLDQITD-QANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVI 176

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V D + DPHN+GAI+R+A A    G++  +R +   ++ + K A+GALE+ P  R+ NL
Sbjct: 177 VVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNL 236

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL+ +   GF   G ++   +PL        I L++G+EG+GL   TQ +   +  + 
Sbjct: 237 GRALEDLKEAGFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIP 296

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G   +LN S AA +ALY      +
Sbjct: 297 LMGKTPSLNASVAAGMALYEIFRQRS 322


>gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
 gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
          Length = 249

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVKEAIVSGHAINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D              +++LD + DPHN+G+ILR+A A 
Sbjct: 62  S--NAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  + + 
Sbjct: 120 GVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKENGFWVAGTEASNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 262

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 92/251 (36%), Gaps = 5/251 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++ + + +   Q       G+  V  A++        +     A   +   A 
Sbjct: 10  NATVKAVRALHMR-KEREQSGLFLAEGLKIVIEAIDCGHAPKILMYGPDAADHPMLQKAA 68

Query: 87  LP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + ++K+  ++     + + T      +     ++   + +  V D
Sbjct: 69  QACFKAGGEVIEVNREILEKVSRRDNPQAVVGVFTQVYTPLSAIVPESAPCWVAMQAVRD 128

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A  C G+I         S    ++  G++     I  +++ + L    
Sbjct: 129 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKASVQEFLAWRE 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +W    IG    +    +         +++G E +GL P+          + M G   +L
Sbjct: 188 TWPGSVIGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 247

Query: 264 NVSNAAAVALY 274
           N+S A  + +Y
Sbjct: 248 NLSVATGIMIY 258


>gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
 gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
          Length = 286

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDLFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EH+P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
 gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
          Length = 258

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--- 105
           + G H +  AL   +    ++         ARL+  A L     VK +    +D++V   
Sbjct: 5   ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMVPGI 64

Query: 106 ---------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                    G      G A  T               L+MVLD + DPHN+GAILRSA  
Sbjct: 65  DHRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDSLVMVLDGITDPHNLGAILRSADQ 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  D ++  +R S   +  +A+ +SGA +++P   ++N+  +   M       I  +  +
Sbjct: 125 FGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNI-TSTLTMMKDHGFWIYGADMN 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  E      +  +++G+EG G+    +E    +  + M G I +LNVS AA + +Y  
Sbjct: 184 GESSETIEFTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMYEA 243

Query: 277 QNHF 280
           +   
Sbjct: 244 RRQR 247


>gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1]
 gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 250

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       I K+ G
Sbjct: 7   VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLERAKEAGARLIEADALRIAKLAG 66

Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     +LD              LL+VLD V DPHN+GA LR A    
Sbjct: 67  SHGHQGVAARVEAVAQVHSLDELLEQLEADGVEKPLLLVLDGVTDPHNLGACLRVADGAG 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ +
Sbjct: 127 AHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAPR 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY    
Sbjct: 187 TLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALR 246

Query: 279 HF 280
             
Sbjct: 247 QR 248


>gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
 gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
          Length = 244

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 9/242 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H VSA +      + ++L     K+   +   D        V       ++K  G
Sbjct: 3   ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62

Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A     + S  L    D    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 63  HKQHQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   + V++K A GA E IP I ++NL   L+++   G   IG + ++   L  
Sbjct: 123 VLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLYD 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              N  IA +LGAEG G+R  T+E    +  + M G +++LNVS A++V L+    Q  F
Sbjct: 183 ADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQF 242

Query: 281 AK 282
           +K
Sbjct: 243 SK 244


>gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella
           byssophila DSM 17132]
 gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella
           byssophila DSM 17132]
          Length = 263

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 14/260 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            KK      +       +  F++GV++V   L +       LL  +              
Sbjct: 9   VKKFHKHINRP-----NKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLARNR 63

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
             PV+ VP + ++++      HQG     + +    L  V         S L+++LD + 
Sbjct: 64  GIPVQKVPMEKLNRVT--MKNHQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDRIT 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N GAI RSA       ++   R S   +    K++SGAL  IP  R ++L + ++ +
Sbjct: 122 DVRNFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVKYL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + GFQ I  +      +     +   A+I+G+E  G+     + +   A + + G +++
Sbjct: 182 KNSGFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVES 241

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNVS AA V L+       K
Sbjct: 242 LNVSVAAGVILFEAVRQKMK 261


>gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 249

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I++I   
Sbjct: 2   IFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRIT-- 58

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    + +           L     + L ++LD + D  N GAI R+      D
Sbjct: 59  RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGAD 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +       
Sbjct: 119 AIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYDY 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y      
Sbjct: 179 TKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQR 238


>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 248

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A   K    +            ++ V    +D++    
Sbjct: 7   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD               ++LD + DPHN+G+I+R+A A    G
Sbjct: 67  S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G           +   
Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243


>gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
 gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
          Length = 248

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            EN  ++G+  V  A+       KI      +  L++  ++       PV+ VP + +D+
Sbjct: 2   KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  +
Sbjct: 120 AGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y  
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 242

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ AL      + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   ++   K+++GAL+H+P +R++NL+  L K+ +  F   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   K  K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 TVYSKWNTK-GKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L]
 gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L]
          Length = 259

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 6/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84
           +   K+++  + + +   Q +   L G H ++ A       +     ++   A  +L  D
Sbjct: 7   NPLVKEIRKLH-RVKGRRQQDLFLLEGTHLLAEACAVDYPLVTLCYTSEWLEAHPQLSQD 65

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A++     V+ V    +  I     V     + TA  L  +   + +  L + L+ + DP
Sbjct: 66  ASV-RSQRVEVVSQSVLKAIA--TTVEPDGVVATATRLPLSPKPLNSLSLGLALETIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+AVA   +G+  +      ++  + +++ G    +P     +L   + +  +
Sbjct: 123 GNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHLPTLVAQAQA 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +    D+K             ++LG E  GLR    +TA    ++ +   +++LN
Sbjct: 183 QGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTADQQVNIPLMPGVESLN 242

Query: 265 VSNAAAVALYITQNHF 280
           V+ AAA+ LY  +   
Sbjct: 243 VAIAAALMLYEAKRQR 258


>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 245

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A   K    +            ++ V    +D++    
Sbjct: 4   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD               ++LD + DPHN+G+I+R+A A    G
Sbjct: 64  S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G           +   
Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAA-DMDGETFY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240


>gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus
           pyogenes MGAS315]
 gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 248

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +     
Sbjct: 129 GVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
 gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
          Length = 248

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            EN  ++G+  V  A+       KI      +  L++  ++       PV+ VP + +D+
Sbjct: 2   KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++   ++ +   G +    S  +
Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y  
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
 gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
          Length = 297

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 26/297 (8%)

Query: 8   KSEKIFSLK-DSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------PENL-----FLYGV 54
           ++ K    K +    +  + ++  K+     +K   T         PE+       L+G 
Sbjct: 2   RNGKAKGKKQERTDKQPSQENKFNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGR 61

Query: 55  HTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           + V  AL +  R+I ++L  K            A          V    +D++ G+E  H
Sbjct: 62  NAVIEALKS-EREIDKILIQKGEKEGSVIKIISAAKAKGIVTLEVEKSKLDELTGREK-H 119

Query: 112 QGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           QG+    A     +++ +            +++L+++ DPHN+GAI+R+A      GII 
Sbjct: 120 QGVVAYVAAHEYVSVEEILEDAAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIII 179

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            KR +   +  +AK+++GALEH    ++SN+   ++ +   G           K L +E 
Sbjct: 180 PKRRAVGLTGTVAKASAGALEHTKVAKVSNIAQTIKDLQQKGLWIACA-DMDGKVLFEEN 238

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               I +++G+EG+G+   T++T   +  + M G + +LN S AA++ +Y       
Sbjct: 239 LTGPIGIVVGSEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRN 295


>gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 247

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E   ++G   +  A+    +    L+    ++ L+   ++        ++ VP + +D+
Sbjct: 2   KEFEMIFGKRAIIEAIQIGKKIDKILICKGLQSKLSHELFNIIKETDILIRRVPREKLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL    + +    L+++           L+++LD + D HN GAI RS   
Sbjct: 62  LT--RRNHQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVHNFGAIARSCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              + I+     S S +A   K ++GAL  +   R SN+ +A++ +   G++    +  +
Sbjct: 120 AGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLCGYKVYAATEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +       A+++G+E KG+ P        +  +   G I +LNVS A AV LY  
Sbjct: 180 TTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNVSAATAVLLYEV 239

Query: 277 QNHFA 281
                
Sbjct: 240 LRQRT 244


>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
 gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + +  I ++  + +A  +      D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-MITEVYISNSAKDKETAQIIDLCRQRGVVVKFVDRNKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+            D +         +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAREFEYCDTDDILLEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YECDFTIPACIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 252

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 109/278 (39%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1   MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +LL +       +W   L   + V  +  + I  ++ +    QG+    A 
Sbjct: 42  LRQDG-LVLELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVAT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + L+++D V DP N+G ++R+A A   D ++  K  +   +  + +S 
Sbjct: 97  SE--PDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRST 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP I+                    +  D  K L    K D +AL++G EG G+
Sbjct: 155 QGSHFHIPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 215 SPELQDRLSEKVYITIYGDSESLNVAVAAGILLYGLRK 252


>gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
 gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
          Length = 252

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+H V +AL +    + +++  K   +   R            ++  P   +D++V  
Sbjct: 5   IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLARNQGVTIERRPRTELDRLVD- 63

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHNIGAILRSAVAFS 158
              HQG+  E                         LL+VLD V DPHN+GA LRSA A  
Sbjct: 64  -GRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +  + K A GA E +P++R++NL   L  + + G   +G + D+++
Sbjct: 123 VTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAEQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L  +     IAL++GAEG+G+R  TQE    + +L M G + +LNVS A  V L+    
Sbjct: 183 SLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVR 242

Query: 279 HFA 281
             +
Sbjct: 243 QRS 245


>gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           CMCP6]
 gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           YJ016]
 gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
 gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
           vulnificus CMCP6]
 gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
          Length = 247

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L+    +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVRAVLDKEPERFIEAYVLKGRQDDRLMPILNELQMVGVSLQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P           + A   S LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
 gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
          Length = 242

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAADKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L+        +++ LL++LD + DPHN+G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 181 SHKWNT-SGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFR 239

Query: 279 H 279
           +
Sbjct: 240 N 240


>gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
 gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
          Length = 257

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 98/256 (38%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K + +  + ++   + +   + G          P  +I +   T+    +   + 
Sbjct: 6   SNAKVKNIMNLKKSAKARKKEKCFLVEGPRMFFEI---PKDRIEECYLTEEFEDKYAEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144
           N    +  + +       +   +     +A+      S   L     +    +L+++ DP
Sbjct: 63  N---GWHYELISENVCKHLSDTKTPQGVIAVVRRTEPSIEELLHKEKNPCFFLLENLQDP 119

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A      GII  +      +  + +S  GA+  +P++   +L + + ++  
Sbjct: 120 GNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRSTMGAIFRVPFVIADSLPEVIFQLKQ 179

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G              +Q+   D  A ++G EG GL  +    A     + M G +++LN
Sbjct: 180 NGVSVYAGHLKGDVFYKQD-YRDGSAFLIGNEGNGLTDEITALADYKIKIPMKGKVESLN 238

Query: 265 VSNAAAVALYITQNHF 280
            + +A + +Y T    
Sbjct: 239 AAVSATILMYETMRQR 254


>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CMR15]
          Length = 259

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++  +K +++ +  ++   +     L G+H V+A L+        L++ ++ A   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                  P  V  +      ++     V  G+ L             R     ++LD + 
Sbjct: 66  PLLARIDPQSVVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H     T   +  +   +     N  +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 HVPLLATSSHARHAVFDMP---LNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV  AAA+ L+      
Sbjct: 239 LNVGAAAAICLFEAVRQR 256


>gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
 gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
          Length = 286

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSNH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+E++P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEYVPVARVTNLVQAVQQLKEIGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 251

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 106/237 (44%), Gaps = 5/237 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++  ++G + V  AL         L+A  +   +   D        V+  P Q ++++  
Sbjct: 7   QSYVIWGRNPVIEALVAGQSMEKILIAHDSKAPKELLDLAKERGIKVQIAPRQKLEELAN 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A+ +     P  +  R +       +VLDH+ DP N+G+I R+   F   G+
Sbjct: 67  TKKTQGVVAILSPITYVPEEELFRKTIEEKGFFVVLDHITDPQNVGSIARTVEVFGGIGL 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   +AV+ KS+SGA+ H+   +  +++ A++     G   +       K + +
Sbjct: 127 LIPKDRSAPINAVVVKSSSGAIFHLKISKTPSISKAIKTFKEMGGW-VYALEKGGKDITK 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + ++LG+EG+G+     E +     + M G + +LNVS A A+ L+    +
Sbjct: 186 VDFAYPMCIVLGSEGEGVSKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKN 242


>gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
 gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
          Length = 248

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            EN  ++G+  V  A+       KI      +  L++  ++       PV+ VP + +D+
Sbjct: 2   KENEMVFGIRAVIEAIQADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LT--RKNHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  +
Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y  
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 245

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +                      + +H        L G H    A
Sbjct: 1   MEIIQSKQNASIKTARKL-------------------LQGKHRKTS--YLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 +I Q+   +    R+   +       VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAEILQVFVLEEMADRVVDVS------KVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL+  + V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  ESQSLPESLSGKYLLL--EDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R                      S           +D  AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRGPIFEMIETCQKQGFPILATTLSTVSVDYRAVKTDDNFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 210 SQDMAESANQLVHINMPGRAESLNVAVAAGILMF 243


>gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
 gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +N  ++GV  V  A+       K+      ++ L++  +        PV+ VP + I++
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKEIDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I   +  HQG+    +P+           L     + LL++LD V D  N GAI R+   
Sbjct: 63  IT--KKNHQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +        +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158]
 gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158]
          Length = 260

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPELCV-ATEGALQHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++ +++  D V 
Sbjct: 65  QAIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +             ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDVLAGRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +     +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPI---ALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1]
 gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1]
          Length = 271

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 4/255 (1%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   +  +   +     + G+  V+ ++ +     F +++     + + +   L   
Sbjct: 11  KLVKDLIKSKKARMKNRCFIVEGLKNVAESIKSNYEVRFVVISDDFFKSNIGFIKILSKQ 70

Query: 91  F---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +  V     +++       QG+        +   D  + + L++ LD + DP N+
Sbjct: 71  VCPNRLYQVRDNLFNELTD-TVTPQGIMAVINFKDTNIEDVQKENFLMIALDRIQDPGNM 129

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A   D I+  ++     +  + +SA G+L H+P I+  +L   L ++   G 
Sbjct: 130 GTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDLIKTLIELKEKGG 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +     +KKP           +++G+E +G+  +    +  +  + MPG  ++LNV+ 
Sbjct: 190 KVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVRISDELVKIPMPGSAESLNVAI 249

Query: 268 AAAVALYITQNHFAK 282
           A  + ++       K
Sbjct: 250 AHGIMVFEAVKQRIK 264


>gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 244

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++ A K     RL    N        ++    + +D  
Sbjct: 3   NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLGITIQEAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V   +    +A               L A + + LL++LD V DPHN+GA LR+A A   
Sbjct: 63  VKGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGACLRNADAAGA 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++   
Sbjct: 123 IAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIVGTAGEATHD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A+ + L+     
Sbjct: 183 IYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQ 242

Query: 280 FA 281
            +
Sbjct: 243 RS 244


>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
 gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
          Length = 247

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 260

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 87/258 (33%), Gaps = 10/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
              +   K ++S  + +RH  +  +  + GV  V+ AL   +     L A          
Sbjct: 6   SPANHHVKWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAG 65

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               N     P        +          QG+            +      L +VLD +
Sbjct: 66  TALLNRLRHLPHCFPATPAVIVAAADTEQPQGVVAAVTWP-----ELPPRPGLRLVLDAI 120

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LRSA A     ++         +  +A++A GA   +P       T   + 
Sbjct: 121 QDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPLRVSPWETIRAE- 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                +      S  ++P          ALI+G E  GL    +  A     + M G I+
Sbjct: 180 --LQSYTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIE 237

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN   A ++ L+     
Sbjct: 238 SLNAGVAGSIILFEALRQ 255


>gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
 gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
          Length = 265

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENDVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 247

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + V  A+   +RK+F++  +K+               H   +  VP   +DK+V 
Sbjct: 6   LVPGKNPVVEAIR-GNRKVFRIYISKDSNKNFQDEMLKLAQQHNINLDKVPLDRLDKMV- 63

Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               HQG+  ET P     LD          +    L++LDH+ DP N GAI+R+A A  
Sbjct: 64  PTTEHQGIVAETEPFKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG+I  KR S   +  + K++SGA EH+P I++SNL   + K+       +G   D  +
Sbjct: 124 VDGVIIPKRRSVDVNPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDR 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +E  N  +AL++G E  G+ P  ++    +A++ M G + +LN S A AV LY    
Sbjct: 184 GIFEENYNIPLALVVGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLYEIYR 243

Query: 279 H 279
            
Sbjct: 244 Q 244


>gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittGG]
 gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG]
          Length = 246

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + L++VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   ++++ K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120]
 gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120]
          Length = 273

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 5/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWD 84
            +   K+++  +  ++   +     L G H +  A       ++        A     WD
Sbjct: 19  QNSLVKQIRKLH-STKERHKQGLFLLEGTHLLEEACAMDYPLEVVCCTPEWEANHTALWD 77

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                    + V  + +  I       Q   +      S     V  + +++ L+ + DP
Sbjct: 78  DACSRCDRYEIVSEEVLQAIA---TTVQPDGVVATAKRSEQQSQVPFTGVVLALETIQDP 134

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A A    G++ ++     ++  + ++++G    +      +L   +Q    
Sbjct: 135 GNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATAVSEDLKATVQLCQQ 194

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +     +K    +        ++LG EG GL P     A     + +   +++LN
Sbjct: 195 AGMQVVATLPTAKLTYWEIDWRKPSLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLN 254

Query: 265 VSNAAAVALYITQNHFA 281
           V+  +A+ LY  Q    
Sbjct: 255 VAITSALMLYEVQRQLN 271


>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
 gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
          Length = 254

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSVKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +   +     ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSSTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
 gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
          Length = 247

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           + E   L G + V  A        K+F L   K             H   +  V  + +D
Sbjct: 2   RYEEFTLEGRNAVIEAYRAGKTIDKLFVLEHCKEGSMNTVLREAKKHDTVINYVKKERLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +   HQG+    A     T+D +         S  +++LD + DPHN+GAI+R+A 
Sbjct: 62  QMS-ETGKHQGVIGYLAAYEYATVDEILDKAREKGESPFVILLDDIEDPHNLGAIIRTAN 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  K  +   +A +AK+++GAL + P  +++N++  ++++   G   +     
Sbjct: 121 LAGAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTIEELKKEGMWFVCA-DM 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               +        I L++G EGKG+    +E    +A + M G I +LN S A  V  Y 
Sbjct: 180 GGTTMYDLDLKGSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 IVRQR 244


>gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           W619]
          Length = 248

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+  ++     R+     L     V+    +  +     E 
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ + Q
Sbjct: 127 VVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244


>gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
          Length = 254

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 8/245 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQT 100
            +P    +YG H V A L +    + ++      ++A AR            +  V    
Sbjct: 3   EKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARARDLVHQARDSGVKLAQVEADR 62

Query: 101 IDKIVGKEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           + ++VGK A HQG+            L   L+++    LL++LD V DPHN+GAILRSA 
Sbjct: 63  LGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGAILRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF    +I  K  +   +A + K ASGA + +PY+ ++NL   ++++       I    D
Sbjct: 123 AFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWVIAADMD 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++PL        +A +LGAEG G+R   ++    +A + + G +++LNVS +AA+ LY 
Sbjct: 183 GEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLYE 242

Query: 276 TQNHF 280
           T    
Sbjct: 243 TARQR 247


>gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL +  R I ++   +     L    +         V T   + +D++
Sbjct: 3   EEWILGKNPVIEALRSG-RTINKIWVAEGTNKNLMGPVFALAKEQGVIVTTANRKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  +  HQG+    A      +D +         +  +++LD + DPHN+G+I+R+A A 
Sbjct: 62  VSTD-NHQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPHNLGSIMRTADAV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S S +A +AK+++GA+ ++P  R++NL   ++++   G    G  + +K
Sbjct: 121 GAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKERGVWIAGTDASAK 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q      +A+++G+EGKG+    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 181 QDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNASVAAALLMYEVY 240

Query: 278 NHFA 281
              +
Sbjct: 241 RSRS 244


>gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 248

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL       +   ++  +       PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E          +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244

Query: 281 A 281
            
Sbjct: 245 T 245


>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +A +AK+++GA+EHIP ++++NL   L +M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 249

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 10/247 (4%)

Query: 41  RHTS-QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++      N  +YGVH V+ +L  N   K++     +        +        +  +P 
Sbjct: 2   KNREFNETNDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWMPK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152
           +T++ +    AVHQG  L  +      LD          + L+++LD +NDPHN G+ILR
Sbjct: 62  KTLNDMT-NGAVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G 
Sbjct: 121 TADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +     +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV 
Sbjct: 181 DMNGTPSHKWNT-SGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVL 239

Query: 273 LYITQNH 279
           +Y    H
Sbjct: 240 MYEVFRH 246


>gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 250

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           + G++ VS AL    R+I ++    +   R              PV++V    +  +   
Sbjct: 5   IEGINWVSEALKAG-RQIHRIYVDDSRKDRRVESILAHAHKRGIPVESVGKNQLRSMSAS 63

Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +    +AL +     P  D +           L++LD V DP N+GAI+R+A      G
Sbjct: 64  GSPQGVVALASPYHYWPIEDILEFTQSRGEQPFLILLDGVEDPQNLGAIIRTAECAGVHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+    +S   +  + ++++GA+EH+    ++NL  A++++   G   +G  + +     
Sbjct: 124 IVLPLHHSVKVTPAVGRASAGAVEHMKIALVTNLVRAIEELKQGGLWIVGADAMANHTYF 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      +AL+ G EG+G+R   +E    +  + M G + +LNVS A A+  +      
Sbjct: 184 EVSLAAPLALVFGGEGRGIRRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQR 242


>gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 269

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 7/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83
            ++  K+++ F Q  +   +   L L G H + AA       +  L  T+    R     
Sbjct: 6   QNQTVKQLRKFQQ-PKERRKQSVLLLEGTHLIEAACEVRY-PLQTLCYTEAWQVRHKRLC 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHV 141
           +  +     V+ V P+ +  I         +A+     +             L ++L+ +
Sbjct: 64  EEAIAQSHQVELVSPEVLKSIASTITPDGAIAIAPRRNVWKAESGRPKDMVSLGVILETL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R++     DG+  +              AS        +   ++ +    
Sbjct: 124 QDPGNLGTIIRTSAGVGSDGLWLSHDSVD-LGHPKVLRASVGQWFRMPMATVDVVEQAST 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++ ++    Q         ++G EG GL       A+    + +   ++
Sbjct: 183 LRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDALMACASVTVKIPVAPEVE 242

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ + A+ LY  +   
Sbjct: 243 SLNVAISTALLLYEAKRQR 261


>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
 gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
           LMA3894-4]
          Length = 247

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
 gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
          Length = 322

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 12/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
               +   ++ R  R  +            S+    ++ G + V  AL      S     
Sbjct: 44  HKDKARTERIEREDRTGRPSSPRTPVRGRRSEDAPEYIGGRNPVLEALRAGVPASTLYIA 103

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128
           L    +   +        H   +  V  + +D++  + A+HQG+AL+  P      +   
Sbjct: 104 LRIDNDDRVKESVRIAADHGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLI 162

Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD V DP N+GAI RSA AF   G++   R S   +    K+++G 
Sbjct: 163 GIAQDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGT 222

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRP 242
           L H+   R +NLT  L++    G   IGL  +S   +      +  + +++G+EGKGL  
Sbjct: 223 LAHLTVARAANLTATLREYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSR 282

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +E+   +  + M    ++LN   AA VALY    H  +
Sbjct: 283 LVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHRRR 322


>gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 246

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L ++P R I   +  +    RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
 gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
          Length = 249

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I++I   
Sbjct: 2   IFGVRAVIEAIQAG-REIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRIT-- 58

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    + +           L     + L ++LD + D  N GAI R+      D
Sbjct: 59  RKNHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGAD 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +       
Sbjct: 119 AIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYDY 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y      
Sbjct: 179 TKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQR 238


>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
 gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
          Length = 257

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 4   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 44

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I +L+ +       DW         +  VP   +  +   E      A+    
Sbjct: 45  LKAG--VITELIVSDQTDLPKDWTV---TDVEMYIVPEAIVKVLRETETTQGVFAVCEKH 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 100 EKEIALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +              ++  P  +       ALI+G EG G+
Sbjct: 156 QGSIFHLPIVKGNLEEWVDKLKEKNVPVYGTS-LENGIPYGEVTPTGSFALIVGNEGNGV 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 215 RLEILTKCNQNLYIPIYGGAESLNVAVAAGILTYYLQ 251


>gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
 gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
 gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
          Length = 248

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL       +   ++  +       PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E          +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244

Query: 281 A 281
            
Sbjct: 245 T 245


>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 311

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 108/277 (38%), Gaps = 13/277 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLA 73
           ++    +++     K  ++ ++     ++  +  + G ++V  AL      S    Q   
Sbjct: 36  EARKGHVKQRAAQAKSRRAQSRTKGPRAKGTSELVVGRNSVVEALREGVPASTLYVQQFI 95

Query: 74  TKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128
             +   R             +   P   +D++      HQGL L+  P      +     
Sbjct: 96  DSDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLAAA 154

Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                +  L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++GA  
Sbjct: 155 AADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGAAA 214

Query: 186 HIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             P  R +N          +        +    +  + E     +A+++G+EGKGL    
Sbjct: 215 RTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLSRLV 274

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ET      + MPG  ++LN   AA + LY      +
Sbjct: 275 GETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRRS 311


>gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
 gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
          Length = 259

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQT 100
           ++ E+L +YG + V  A  +    I +L   +                    +  V    
Sbjct: 12  NEEESLVIYGRNAVLEAFRSGKT-IDRLYVQEGVADGTLQSILRTAKKTDAVINFVNKDR 70

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           ++K    +     +A+  A   +   D             ++VLD + DPHN+GAI+R+A
Sbjct: 71  LNKYAEGDKHQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRTA 130

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G+I  KR++   +A +A++++GA+ + P  +++N++  ++++   G        
Sbjct: 131 NQAGAHGVIIPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIWFACADM 190

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +           I L++G+EG G+    +E    +  + M G I +LN S AA V  Y
Sbjct: 191 SGELMYNCN-LTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSY 249

Query: 275 ITQNHF 280
                 
Sbjct: 250 EIVRQR 255


>gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 248

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVVVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa
           DSM 4126]
 gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa
           DSM 4126]
          Length = 258

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++     +  +++G   V  A++       I+     +N L     D       P   VP
Sbjct: 5   NKRPKLNDKDYIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQKVPFTKVP 64

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAI 150
            + +++I      HQG+    + +   +LD             L+++LD V D  N GAI
Sbjct: 65  IEKLNRIT--MKNHQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTDVRNFGAI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA     D I+   + S   ++   K+++GAL +IP  R ++L + ++ +   G Q +
Sbjct: 123 ARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQKSGLQVV 182

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             +   K  +        +A+ILG+E  G+      TA  +A + M G I +LNVS + A
Sbjct: 183 ACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASLNVSVSCA 242

Query: 271 VALYITQNHFA 281
           +A++      +
Sbjct: 243 IAVFEAVRQRS 253


>gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
 gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
          Length = 265

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 13/264 (4%)

Query: 16  KDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           ++ H  K      +   K+ +    K +   +    F+ G H V  AL      + +L+ 
Sbjct: 7   RELHIMKNIDSVQNPRVKQWKKLQTK-KERDKKGLFFVEGFHLVEEALKAG--IVTELIV 63

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           +       DW  N      +  VP   +  +   E      A+         L   +   
Sbjct: 64  SDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKHEKEVALTDGK--- 117

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++  +P ++ +
Sbjct: 118 -FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVKGN 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 +   +          ++  P  +       ALI+G EG G+R +         +
Sbjct: 177 LEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGVRQEILTKTDQNLY 235

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + + G  ++LNV+ AA +  Y  Q
Sbjct: 236 IPIYGGAESLNVAVAAGILTYYLQ 259


>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 254

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 100/277 (36%), Gaps = 30/277 (10%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I   K+E++   K                        +   +     + G H V  AL
Sbjct: 7   KRIESPKNERVKQWKRLLTK-------------------KEREKTGLFLVEGFHLVEEAL 47

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            +    +  L+ ++       W  +     P+  V    I ++   E   QG+      L
Sbjct: 48  KSN--IVELLIVSETKTIPTSWKVD---HIPMVIVTEAVIGELSDTE-TPQGIVAVCRHL 101

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                D        + +D V DP N+G I+R+A A   D ++  +      +A + ++  
Sbjct: 102 QWNVADVQTA----LFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQ 157

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G+L H   +   ++   +    +      G S  +         +   ALI+G EG G+ 
Sbjct: 158 GSLFH-FPVIKGDIGQWIAHFQNRHIPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVN 216

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K  +  T+  ++ + G  ++LNV+ A  + LY  Q 
Sbjct: 217 DKWLQQTTANLYVPIYGQAESLNVAVATGILLYHLQK 253


>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 264

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 94/257 (36%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K      QKS    Q     + G   +  AL +P   + Q+       +    
Sbjct: 6   SKDNKKIKYAARLKQKS-FRKQEACFLIEGKKMLEEALKHPK-LLRQIFIEAELASEYTE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                  +    V  + +  I   E    G+            + +  +  L+ LD + D
Sbjct: 64  LYQQHPEWECYVVDKRLMKHISDTETPP-GIVALCQIPSWSREEFLSQNAFLLYLDRIAD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RS  A   DGI+ +       S  + +++ G +     + +    D L+++ 
Sbjct: 123 PGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIF-NIPLLLDFSVDELKRLK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +     S  +++ +          L +G+E +G+RP  +E       + +   + +L
Sbjct: 182 QNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCKIPIKPGVDSL 241

Query: 264 NVSNAAAVALYITQNHF 280
           N + A A+ +       
Sbjct: 242 NAAVACAIIINEAWKQR 258


>gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
 gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
          Length = 291

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 140/268 (52%), Positives = 186/268 (69%), Gaps = 13/268 (4%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQ-----------PENLFLYGVHTVSA 59
            S +D+HYA LRR HRD ++ +      +    ++           P+ + LYG+HTV A
Sbjct: 9   KSARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLYGLHTVRA 68

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQG+ LET 
Sbjct: 69  ALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQ 128

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKS
Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+LG+EGKG
Sbjct: 189 ASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT++T  ++A L MPG IK+LNVSN
Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
 gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
          Length = 245

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLECEPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++ +
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     ++F L   ++   +            +  V  + +D++    
Sbjct: 8   IEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVKSITREARKQDTIINYVSKERLDQLSETG 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                LA   A   +   D +R          L +LD + DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVLAYAAAYKYAQVEDMLRAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GAL + P  +++NL+  ++++   G   +       + + +
Sbjct: 128 IIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEELKERGLWFVCA-DMGGESMYR 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 187 LNLKGPIGLVIGNEGEGVSRLVKEKCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
 gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
          Length = 291

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 140/268 (52%), Positives = 188/268 (70%), Gaps = 13/268 (4%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQ------SFNQKSRHTS-------QPENLFLYGVHTVSA 59
            S +D+HYA LRR HRD ++ +        +++ +  +        P+ + LYG+HTV A
Sbjct: 9   KSARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLYGLHTVRA 68

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQG+ LET 
Sbjct: 69  ALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQ 128

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKS
Sbjct: 129 PLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKS 188

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+LG+EGKG
Sbjct: 189 ASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKG 248

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT++T  ++A L MPG IK+LNVSN
Sbjct: 249 LRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 262

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 97/258 (37%), Positives = 144/258 (55%), Gaps = 13/258 (5%)

Query: 31  KKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           KK +   +K +       E ++L+G+H V  AL NP R   +L+ T+NA  +L  DA   
Sbjct: 2   KKPKWVIEKEQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAA 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHV 141
               V+   P+     +  E+VHQG ALE  PL   +L               L++LD V
Sbjct: 61  SGMEVELSDPRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRV 120

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAILRS+  F    ++  +R+S  E+  LAK+ASGALE  PYIR+ NL DA+ +
Sbjct: 121 TDPHNVGAILRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDE 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + G+  +GL  + ++ +EQ     ++  +A+++GAEG GLR KT+E    +  +   G
Sbjct: 181 LRAMGYLLLGLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAG 240

Query: 259 IIKALNVSNAAAVALYIT 276
              +LNVSNAAAVALY  
Sbjct: 241 GFASLNVSNAAAVALYAV 258


>gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
 gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
          Length = 248

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGKHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
 gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
          Length = 260

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++ +++  D V 
Sbjct: 65  QAIVARIDMQRIVTLPDALFGQLSNVVNGVGFLLLVDRPTHPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
 gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
          Length = 249

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +N  ++GV  V  A+         L+    ++ L++  +        PV+ VP + I++
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKEIDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I   +  HQG+    +P+           L     + LL++LD + D  N GAI R+   
Sbjct: 63  IT--KKNHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +        +I+GAE  G+             + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 255

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  V  A+N+     K+F     K  L R               VP + ++++   +
Sbjct: 17  IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLS--K 74

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   T+++         N+ L ++LD ++D  N GAI+R+A     DG
Sbjct: 75  NNHQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G      +  +   + 
Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+++G+E +G+ P   + A  +A L + G I++LNVS A AV LY      
Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253


>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
 gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
          Length = 270

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 96/262 (36%), Gaps = 12/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83
            +   K+++  +  ++   + +   L G H +  A         +   L  + A  +L  
Sbjct: 6   QNSLVKQIRKLH-STKERHKQQLFLLEGTHLLEEACAANYPLEVVCCTLQWQQAHPQLWS 64

Query: 84  DANLPHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           +               + V  + +  I       Q   +      S     V  + L++ 
Sbjct: 65  EVCSRCDASGGGSHRAEVVSEEILAAIA---TTVQPDGVVATAKRSQQQTQVPLTGLVLG 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ + DP N+G ++R+A A    G+  +      ++  + ++++G    +      +L  
Sbjct: 122 VETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKAVSPDLKA 181

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +Q+    G Q I     +     +        ++LG EG GL       A +   + + 
Sbjct: 182 TVQQCQQAGMQVIATLPTASLTYWEVDWRKPSLILLGNEGAGLSDDLAAMADTQVKIPLN 241

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             + +LNV+ AAA+ LY  Q  
Sbjct: 242 PGVDSLNVAIAAALMLYEAQRQ 263


>gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42]
 gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   ++ +AK+++GA+EHIP ++++NL   L +M   G   +G  + 
Sbjct: 120 AVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VYRKRN 245


>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 257

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 106/284 (37%), Gaps = 30/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  ++  +++ + S                  +     +     +   L L G+H V A 
Sbjct: 1   MKYLTSAQNDTLKS------------------LVRLASRPAERRKSGLLVLEGLHLVDAW 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    R + QL   ++ALA  +  A L       PV  VP   + K     +  +     
Sbjct: 43  LARQPR-LDQLFVREDALAHPEVTALLARLSADTPVAVVPAALLGKASELASPAE----- 96

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L    + A  +   +++LD V DP N+G +LR+A A     +  +   +   S    
Sbjct: 97  VIALAPIPVPAPYHGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKAL 156

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  GA      + +         + ++  + +    +   PL        +A + G EG
Sbjct: 157 RAGMGA---QFALDLHERAVLPAVLQAFSGRKVVTHLEGSVPLWSLDLTGDVAFVFGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            G+     + A     + MPG+ ++LNV+ AAA+ L+      +
Sbjct: 214 AGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLFERVRQRS 257


>gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
 gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
          Length = 246

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 9/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            ++  +YG+H V A L     +I ++   K    +   D           V+ +  +++D
Sbjct: 2   SKSEIIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLD 61

Query: 103 KIVGKEAVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    E     LA            L   L+ +  +  L++LD V DPHN+GA LRSA A
Sbjct: 62  EKAQCEQHQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S S + V+ K A GA E +  I+++NL   ++ +   G    G + ++
Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +     +  IA+ +GAE KGLR  T+E   ++  L M G + +LNVS A  + L+  
Sbjct: 182 TGSVYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEV 241

Query: 277 QNHFA 281
               +
Sbjct: 242 VRQRS 246


>gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 258

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 23/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  ++   ++ +   K                        +   Q     L G H V  A
Sbjct: 1   MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  + +++ T   LA       + +      V  + +  I       QG+A   A 
Sbjct: 42  SKAGIE-LLEVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S  L A       + LD V DP N+G ++R+A A    G++  +R +      + +S 
Sbjct: 98  PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+                          +   K        D  ALI+G EG+G+
Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
 gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
          Length = 241

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 111/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +T+  AL    + ++ +    NA      +       P K V      K +G  +
Sbjct: 4   YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLGNVS 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E       ++D            LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 63  -HQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  +   Q 
Sbjct: 122 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             N  + +++G+EG G+    +++      L M G I +LN S A AV LY   N   
Sbjct: 182 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYNSRN 239


>gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 258

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 23/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  ++   ++ +   K                        +   Q     L G H V  A
Sbjct: 1   MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  + +++ T   LA       + +      V  + +  I       QG+A   A 
Sbjct: 42  SKAGIE-LLEVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S  L A       + LD V DP N+G ++R+A A    G++  +R +      + +S 
Sbjct: 98  PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+                +         +   K        D  ALI+G EG+G+
Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+    +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
 gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
          Length = 249

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQNITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  +++NL+ AL +M   G    G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+   Q      +AL++G+EGKG+    +E    +  L M G + +LN S AA++ +Y 
Sbjct: 180 AKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VYRKR 244


>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 247

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 291

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++  QK RH  +       G+  V  AL+     I  L+  + A      + 
Sbjct: 32  SNPIVKDIRALAQK-RHRDETGLFLAEGLKLVGDALDAGWE-IQTLVIARAAAGHEFLEK 89

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V     + ++ I  ++     + +    L       V    +++ LD V
Sbjct: 90  TAARTVSLGGDVLEANAKVLEAITRRDNPQNAVGVFRRRLTPLAKLDVSGRNVIVALDRV 149

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+A A    G++         S    ++  G++  +P  + S       +
Sbjct: 150 RDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRATMGSIFAVPLAKASEAEFLEWR 209

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G         +    E         L++G E  GL P        +  +   G   
Sbjct: 210 KGFSGLVAGTHMEGAVDYREPRYGAQPTILLMGNEQAGLTPSLARICDVLVRIPQSGRAD 269

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  V L+  + 
Sbjct: 270 SLNLAVATGVMLFEARR 286


>gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 258

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 23/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  ++   ++ +   K                        +   Q     L G H V  A
Sbjct: 1   MEQLTSIHNQHVKDWKKLQTK-------------------KARRQTGTYLLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  + +++ T   LA       + +      V  + +  I       QG+A   A 
Sbjct: 42  SKAGIE-LLEVVGTAEQLAAHPELEGMANAT--YEVTEEIMKHITD-TVTPQGIAAVVAL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S  L A       + LD V DP N+G ++R+A A    G++  +R +      + +S 
Sbjct: 98  PDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+                          +   K        D  ALI+G EG+G+
Sbjct: 158 QGSQFHLQMFEGDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 218 SDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265]
 gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeovibrioides DSM 265]
          Length = 249

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V   L      I ++    N       +  +             ++K+     
Sbjct: 10  IVYGRNAVLELLREKPGSIEKIYFQFNTTHPKLKEILITARRQKLITGKARLEKLSLIAG 69

Query: 110 V--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+    + +   T++         + LL+VL  ++DPHNIGAI+R+A A + DG+
Sbjct: 70  TTKHQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGV 129

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +      +AV+ K+++GAL H+   ++ +L  +L+ +H+ G + I    +++     
Sbjct: 130 VLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETNYTD 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A++LGAEG GL P+  E       + M G +++LNVS  A V LY      
Sbjct: 190 ADFRLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQR 247


>gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 244

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +T+  AL    + ++ +    NA      +       P K V      K +G  +
Sbjct: 7   YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLGNVS 65

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E       ++D            LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 66  -HQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  +   Q 
Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             N  + +++G+EG G+    +++      L M G + +LN S A AV LY   N   
Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYNSRN 242


>gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
 gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
          Length = 260

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  +A L+  +     + AT+ ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPELCV-ATEGALAHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L     + P  + V ++ +++  D V 
Sbjct: 65  QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +             ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +       +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVFDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
          Length = 248

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK 103
           +     +YG + V   L      I ++    N A  +L           +       ++K
Sbjct: 4   EHSENIVYGRNAVLELLQQKPESIEKIYFQFNTAHPKLKEIIIGARRQKI-VTGKARLEK 62

Query: 104 IVGKEAV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +        HQG+    + +   +LD        +S LL+VL  ++DPHNIGAI+R+A A
Sbjct: 63  LSLIAGTTKHQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D ++  +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q I    D+
Sbjct: 123 VAADAVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY +
Sbjct: 183 ELNYNDADMKRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYES 242

Query: 277 QNHF 280
               
Sbjct: 243 MRQR 246


>gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
          Length = 246

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + +  + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEVAETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
 gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
          Length = 261

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 95/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E+I                  + +Q    + +   Q     L GVH +   
Sbjct: 1   MKQISSPNNEQI------------------RHLQRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +    +VLD V DP N+G +LRSA A     ++  +  +   S  + ++
Sbjct: 102 IPLGRTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E      A + G EG G
Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCGPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     E A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLERADKCVRIPMNDATESLNVAMAATICLFEQMRQRA 259


>gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
 gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
          Length = 245

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae Rd KW20]
 gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittEE]
 gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
 gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE]
 gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
          Length = 246

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
 gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
          Length = 296

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKTVPPQTIDKIV 105
            ++ G + V   L      +  L+A+  +A  R+     +      PV  V    +D+  
Sbjct: 52  EWVLGRNPVLECLRAKVPAVELLVASGIDADERVAESVRIAGNVGVPVTEVARFELDRRS 111

Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              A HQG+ L   P      +             L + LDH++DP N+GA++RSA AF 
Sbjct: 112 S-GAPHQGIGLRVRPYEYHHPEDLLTEAENSGRPALFVALDHISDPRNLGAVVRSAAAFG 170

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++   R S S +A+  ++++GA   +P  +  NL  +L++    G   +GL ++   
Sbjct: 171 GHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQERGLLLVGLDAEGDT 230

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+     + +AL++G+EGKGL    +E+   +  + M G +++LNVS A  V L     
Sbjct: 231 SLDDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLNVSVATGVVLGEIAR 290

Query: 279 HF 280
             
Sbjct: 291 QR 292


>gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5]
 gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5]
          Length = 240

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 100/239 (41%), Gaps = 5/239 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +   ++G + +  AL          +A  +   +   +        V+ +  + ++++ 
Sbjct: 2   EKKFVIWGRNPIIEALRAGRNLEKIYVAHDSHPPKELLELAKKRGVKVQRISRKKVEELA 61

Query: 106 GKEAVHQGLA--LETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           G +     +A       +    L  + +      +V+DH+ DP N+G +LR+       G
Sbjct: 62  GTKKTQGVVALLSPVNYVSPHELFKECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGGVG 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            + +K  +   +  + K++SGA+ H+   ++S+L     K        +       K + 
Sbjct: 122 ALISKDRTSPINETVVKASSGAVFHLKISKVSSL-SRELKNFQKMGGWVFAVEKGGKDIR 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      +AL+LG+E KG+     + +  +  + M G + +LNV +A A+A++ T    
Sbjct: 181 EVDIPLPVALVLGSEDKGVSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAKKI 239


>gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
 gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
          Length = 276

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 45  QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
              N  +YGVH V+ +L  N   K++     +        D        +   P +T++ 
Sbjct: 34  NEANDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAAEKKVSISWTPKKTLND 93

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  +      LD          + L+++LD +NDPHN G+ILR+A A 
Sbjct: 94  MT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADAT 152

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF   G   +  
Sbjct: 153 NVTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGT 212

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +    + K+ALI+G EGKG+ P  ++    M  + M G +++LN S AAAV +Y   
Sbjct: 213 SSHKWNT-SGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVF 271

Query: 278 NH 279
            H
Sbjct: 272 RH 273


>gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
 gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
          Length = 249

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    NL       V T   +T+ K
Sbjct: 4   KEQDAIFGRNPVMEAIKSGKE-IEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G +     +AL          D        +    L++LD + DPHN+GAI+RSA AF
Sbjct: 63  LAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A + K+++GA+E++   ++SN+ + ++ +   G   IG   +  
Sbjct: 123 GVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNGG 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y   
Sbjct: 183 KSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 242

Query: 278 NHFA 281
           +   
Sbjct: 243 SKRK 246


>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 19/292 (6%)

Query: 6   KKKSEKIF-SLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSA 59
            K S++   + +   +   R+ +                 S +  + +   +YG HTV A
Sbjct: 2   SKDSQRPQPNSQGQRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLA 61

Query: 60  ALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           AL N  R + ++        +   +        +   +  V  Q +D+I      HQG+ 
Sbjct: 62  ALEN-ERSLNRIWMVPQLQSDNRFQKGLSTAKANGTLIDRVSNQRLDQIA-PGTNHQGIV 119

Query: 116 LETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
            + +P     L           +  ++++ + + DPHN+GAI+R++ A    G+I  +R 
Sbjct: 120 AQVSPYAYKELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRR 179

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   ++ + K A+GALE  P  R+ NL  AL+++   GF   G S+ + +PL     +  
Sbjct: 180 AVGITSTVMKVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGP 239

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + L++G+EG+GL    +++   +  + + G   +LNVS A  +ALY      
Sbjct: 240 VVLVVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291


>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 259

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 23/277 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++ + +                        +     E   L G H V  A
Sbjct: 4   METIKSAKNSRVKAWQKLQTK-------------------KGRQASETYLLDGWHLVQEA 44

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +   K+  ++ T   LA    +  L    PV  +      K+       QG+  E + 
Sbjct: 45  IQHDG-KLHAVMGTAEQLAEHQEELPL--GVPVFEITDDIAKKLSD-LVTPQGIFAEVSL 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       +    + LD + DP N+G ++R+A A    G++         S    ++ 
Sbjct: 101 PSATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALRAM 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+     +          +               +       + ALI+G EG+G+
Sbjct: 161 QGSQFHLTTTTGNLADWTASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQGM 220

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +P+  +  T   ++ + G  ++LNV+ AA +A++  +
Sbjct: 221 QPELAKMTTQNLYIPISGQAESLNVAVAAGIAMFALK 257


>gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 316

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 11/271 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M    ++LN S AA V L        +
Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIARQRRR 309


>gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
 gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
          Length = 245

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 8/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           N  +YG+H V A L++   +  ++   K       L     L      ++ +  + +D  
Sbjct: 3   NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLGVTLQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +    +A           D       + + LL+VLD V DPHN+GA LR+A A   
Sbjct: 63  AKGASHQGLIARVKPGRQYNENDLDAILDGKENPLLLVLDGVTDPHNLGACLRNADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E +P +R++NL   ++ +   G   +G + ++   
Sbjct: 123 CAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWFVGTAGEATHD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+     
Sbjct: 183 VYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVRQ 242

Query: 280 F 280
            
Sbjct: 243 R 243


>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 296

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 141/267 (52%), Positives = 184/267 (68%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +    +   + R     +          + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+    LE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
 gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
          Length = 246

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL    R I ++   + A         +        V+ VP + +D++
Sbjct: 2   MDYIIGKNPVIEALKAG-RDINKIWIAEGAQRHTVEPVLEWAKRRGVLVQYVPKRKLDQM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              E  HQG+  + A      +D           +   ++LD + DPHN+GAI+R+A A 
Sbjct: 61  A--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADAV 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G    G  + ++
Sbjct: 119 GAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASAQ 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 179 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 238

Query: 278 NHF 280
              
Sbjct: 239 RKR 241


>gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 245

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL    R I ++   + A         +        V+ VP + +D++
Sbjct: 1   MDYIIGKNPVIEALKAG-RDINKIWIAEGAQRHTVEPVLEWAKRRGVLVQYVPKRKLDQM 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              E  HQG+  + A      +D           +   ++LD + DPHN+GAI+R+A A 
Sbjct: 60  A--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADAV 117

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G    G  + ++
Sbjct: 118 GAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASAQ 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 178 DDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVY 237

Query: 278 NHF 280
              
Sbjct: 238 RKR 240


>gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 259

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 13/258 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89
           MQ+F +  R+  +  N  ++G+  V  A+++    I  L   +    +L          H
Sbjct: 1   MQNFQRHDRNEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKALIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142
               + VP + +++I      HQG+    +P+    ++           + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRIT--RKNHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS +A V LY      
Sbjct: 238 LNVSVSAGVVLYEAIRQR 255


>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 280

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 13/272 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+  +          ++   K  ++ ++K ++ ++       G+  V  ALN     I  
Sbjct: 8   KVKEITSL-------SNPIIKYFKALDKK-KNRNRENIFMAEGLKLVIDALNLGWT-IHT 58

Query: 71  LLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L+ +KN+L+    +    +       V     + ++ I  ++     + +      S   
Sbjct: 59  LIVSKNSLSNSTIENTAANTIANGGFVIKASQKVLESITHRDNPQTVIGIFKQQWHSIEK 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              +   + + LD V DP N+G I+R+  A    GII     +   S    ++  G++  
Sbjct: 119 IIRQIGDVYIALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMGSIFS 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R +  T      H  G         S      + KN  I L++G E +GL      
Sbjct: 179 VPLYRCNESTFLNWSTHFKGIIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +A +   G   +LN++ A A+ LY  + 
Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLYEIRR 270


>gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
          Length = 319

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 14/277 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLL 72
           +  H A  R ++   ++       +R   + ++  + G + V  AL +    S    Q  
Sbjct: 42  RKGHKA-YRVSNAMARQAAKRKPVARRGGKGQSEMVVGRNPVFEALRDGVPASTLYVQQF 100

Query: 73  ATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128
              +   R   +         +   P   +D++      HQGL L+  P      +    
Sbjct: 101 IDNDERVREALNLATGRGNIHIMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLVT 159

Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +  L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G  
Sbjct: 160 AAFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTA 219

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
              P  R +NLT  L++    G   +GL++D  + + + E     + +++G+EGKGL   
Sbjct: 220 ARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHELEELGGPVVIVVGSEGKGLSRL 279

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ET   +  + MPG  ++LN   AA V LY      
Sbjct: 280 VGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 316


>gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 328

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 129/290 (44%), Gaps = 18/290 (6%)

Query: 8   KSEKIFSLK-DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAA 60
           + ++  S K      +   +    K+           ++ E+        LYG H V AA
Sbjct: 21  RDQRRPSSKGKFSRDQRSPDKPVLKRRYDPQPSPPEPTESESTLSEDVDLLYGRHPVLAA 80

Query: 61  LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L N  +     +  +   +            +   +  V  + + ++  + A HQG+A +
Sbjct: 81  LENQRQLNRVWILPQLRYDHRFHSLLLQAKANGTVIDEVDSRRLSQVT-QGANHQGVAAQ 139

Query: 118 TAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            AP     L        +     +++V D + DPHN+GAI+R+A A    G++  +R + 
Sbjct: 140 VAPYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAV 199

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             ++ + K A+GALE +P  R+ NL+ AL+++ + GF   G  +D+ K L     N  I 
Sbjct: 200 GVTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCADAGKLLHTVDLNGSIV 259

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++G+EG GL   TQ     +  + + G   +LN S AAA+ LY T    
Sbjct: 260 LVIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQR 309


>gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana
           ATCC 700345]
          Length = 246

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V A L N   ++ ++   +     RL     +       V+    + +D      
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDDKSD-G 66

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+  +  P    + + +           L++LD V DPHN+GA LR+A A    G+
Sbjct: 67  GQHQGIVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + ++   L Q
Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+      
Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
          Length = 253

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 11/248 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDA--NLPHPFPVKTVPPQ 99
                   L G+H +  AL    RK + +L +K+   ARL            PV+     
Sbjct: 3   RKSEAVEILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTM 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILR 152
           T+D +    A HQG+A   +P  +   + +            ++V++ + DP N GA++R
Sbjct: 63  TLDALTD-NARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A+    D I+  K  S S S  ++++++GA+EH     I+N    L+++ + GF   GL
Sbjct: 122 TALCAGVDHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGL 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                 PL        + L++G E KG+RP  ++    +  L +   + +LN S A  +A
Sbjct: 182 DGQGTTPLFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIA 241

Query: 273 LYITQNHF 280
           +Y      
Sbjct: 242 MYEALRQR 249


>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
 gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
          Length = 288

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 126/288 (43%), Gaps = 16/288 (5%)

Query: 8   KSEKIFSLKDSHYAK---LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           +  K F  ++    K    ++  R  +K     + +    + +   + G       L + 
Sbjct: 3   RDNKNFDKRNRQPKKPNFSKKTDRTERKFVKPIEDTVEEQETDRDLVAGRLPAIEVLKS- 61

Query: 65  SRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            R I ++   +    +      +        +  VP   +D++V     HQG+ +  +  
Sbjct: 62  ERDINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVDGM-NHQGVVVAASAF 120

Query: 122 LSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T+D               ++LD V DPHN+G+I+R+A A    GII  KR +   +A
Sbjct: 121 QYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTA 180

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +AK+++GA+EH+   R++NL  A++++   G    G   + +   + E     I L++G
Sbjct: 181 TVAKASTGAIEHVAVARVTNLVQAIKELKERGLWLYGTDMEGQDYRQWET-TLPIGLVMG 239

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            EGKG+    +E    M  + M G +++LN S AA++ +Y       K
Sbjct: 240 NEGKGISRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGRNK 287


>gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 248

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +  ++     + G H V  A
Sbjct: 1   MKRIDSAKNQKVKDWKKLHTK-------------------KERTKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         L+  +  +       +L        +       +   E   Q  A+    
Sbjct: 42  LKTEGAVKEILVKDEGKIPP-----DLDMSIHCYILSEDAFSAVTETETPQQIAAVCR-- 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++ + + L+++D V DP N+G ++R+A A   D ++       + +    +SA
Sbjct: 95  ---MPEDSLTSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP ++ +      +   S          +     E        ALI+G EG G+
Sbjct: 152 QGSHFHIPIVKRNLHVFIEELKASGVKVYGTSLQNGSAFQETA-PIGSFALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNV+ AAAV LY  +
Sbjct: 211 DSAILEKTDLNLYVPLYGQAESLNVAIAAAVLLYHLR 247


>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
 gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
          Length = 270

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 4/256 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLD 82
             +++++K ++    KS    +     L G   +  A       +IF            +
Sbjct: 7   SSDNKNFKYLKKLYNKS-FRKKEGKFILEGYRLIMEACGKARFDRIFMTPYFAKTDEGEE 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHV 141
                    PV  V  + +  +   E               +  L   RN  ++++LD +
Sbjct: 66  IIRKFKDHIPVHFVTGKLLYNVADTENPQGIAAITYVPRSGANILFHNRNRGIILILDRI 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+AVA   +GII  K      +  + +++ GA+  IP +   +     + 
Sbjct: 126 QDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPILTGVSFKRLQKI 185

Query: 202 MHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     I    ++ K   +    + + L++G E +G+R +    A     + + G I
Sbjct: 186 RDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSLADIKIKIPLMGNI 245

Query: 261 KALNVSNAAAVALYIT 276
            +LN + + A+ LY  
Sbjct: 246 DSLNAAVSTAIVLYDI 261


>gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
 gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L   ++ +  +    N   R   D           +  V  + +  + G
Sbjct: 6   LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGVTLHPVDAERLRGMAG 65

Query: 107 KEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+            L   LD +  + LL++LD V DPHN+GA LR A       
Sbjct: 66  TDR-HQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L 
Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLYEAVRQR 243


>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
          Length = 282

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 13/272 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+  +          ++   K +++ N+K ++ ++       G+  V  ALN     I  
Sbjct: 8   KVKEITSL-------SNPIIKDLKALNKK-KNRNREGIFTAEGLKLVIDALNLGWT-IQT 58

Query: 71  LLATKNALARLDWDANLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L+ +KN+L     +    +       V     + ++ I  ++   + + +      S   
Sbjct: 59  LIVSKNSLNNTIIENAAANTIANGGSVIKASQKVLESITHRDNPQKVVGIFKQQWHSIKT 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              R   + + LD V DP N+G I+R+A A    GI      +   S    ++  G++  
Sbjct: 119 IIRRVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFS 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R +         +  G         S      + KN  I L++G E KGL      
Sbjct: 179 IPLYRCNESAFLNWSTNFKGMIVGTHLKGSVDYRAIDFKNGPIILLMGNEQKGLSDVLAN 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++A +   G   +LN++ A A+ LY  + 
Sbjct: 239 HCNNLARIPQCGYADSLNLAVATALMLYEIRR 270


>gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
          Length = 285

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGMDYRRWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
 gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
          Length = 257

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K + +  ++ R   +     + G   V   L    +    LL  K        
Sbjct: 5   SPANPKVKALAALKER-RERERTGLFLVEGRREVERTLRAGLQLETLLLGPKAT----PE 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L    P   +  + ++++  +E     + +   P  +     +    L++VL  +  
Sbjct: 60  DQALAGSAPTLELSQEAMERVSVRENPPPVIGVFRLPHKTLKEVQLPQDPLVLVLLGLEK 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA     D ++  +        V+    S  +     +      +A + + 
Sbjct: 120 PGNLGAILRSADGAGVDLVLVAEGVDLYSPQVIRN--STGVVFSLPVYPVAEEEAARFLE 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +  +   +K   +E     +A +LG E +GL       A     + M G+  +L
Sbjct: 178 EKGLFLVAATPRGEKVYWEENYQRGVAFLLGTEDEGLSEAWLARAGVRVRIPMRGVADSL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NVS +AA+ LY      
Sbjct: 238 NVSVSAALLLYEALRQR 254


>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6]
 gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
          Length = 250

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 13/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103
              LYG + V  AL    R I +L+ +       +             PV+ V  Q +DK
Sbjct: 2   TELLYGRNAVREALRANRRTIKRLVVSNGVQETGIIAEIIKLAEQIGVPVQRVERQQLDK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + ++A HQG+ LET       L+             LL++LDH+ DP NIG +LR+A  
Sbjct: 62  QL-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAEV 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215
               G+    R +   +  +  ++SGA EH+  + + NL   +        +       +
Sbjct: 121 VGVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDDE 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L+    N  +AL++GAEG GL    +E    +  L M G I +LN S A ++ LY 
Sbjct: 181 QAQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLYN 240

Query: 276 TQNHFAK 282
                 K
Sbjct: 241 AWRQRKK 247


>gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
 gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
          Length = 245

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103
           ++  +YG+++V  AL    R+ F+L     +  R      D       PV+    + I +
Sbjct: 2   KDEIIYGLNSVMEALR-GKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G +  HQG+AL T       L      +  R++ LL+VLD V DPHN+GA++RSA   
Sbjct: 61  LCGTD-HHQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   +A + K+++GA+E I    ++N+   L ++ + GF   G   +S 
Sbjct: 120 GAQGVIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESP 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++     +AL++G+EG+G+RP  ++    +  + + G + +LN S A  + L+   
Sbjct: 180 ISIFEQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVV 239

Query: 278 NHFAK 282
               K
Sbjct: 240 RQRDK 244


>gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 246

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q +   +YG+  V  AL       K+F     +  L R           PV+ VP + ++
Sbjct: 2   QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++   +  HQG+    +P+     +           + L ++LDH++D  N GAI+R+A 
Sbjct: 62  RLT--KKNHQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  
Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L  E  +   A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY 
Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VVRQR 244


>gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179]
 gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179]
          Length = 245

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA L+    +  ++   K     RL    N  H     V+ +  Q +DK    
Sbjct: 5   IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E  HQG+  +  P           L   +   LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 65  E-THQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-L 220
           +I  +  S   ++V  K A GA E +P IR++NL   L+ +       +  ++      +
Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQR 243


>gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
 gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
          Length = 246

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
              Q  +  +YG+H    AL      K++     K                 +  +P ++
Sbjct: 2   KRRQEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAAQKKVAISWIPKKS 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           + ++  + AVHQG  L  +      L          ++ L+++LD + DPHN+G+ILR+A
Sbjct: 62  LSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSILRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   G+   G   
Sbjct: 121 DATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D     +      K+ALI+G EG+G+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 181 DGTPSHKWNTA-GKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMY 239

Query: 275 ITQNH 279
               H
Sbjct: 240 EVFRH 244


>gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 287

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 15/271 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPS--RKIFQLLATKN 76
           ++  R  K+ ++  ++     +  +       L G + V  AL       +I      K 
Sbjct: 13  KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALKAGRGINRILVAQGAKE 72

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132
           A              PV+    + +D++      HQG+    AP+   +LD V       
Sbjct: 73  AALAPLLSLAREQGVPVRASKREKLDQLAPDMR-HQGVIAYAAPVAYASLDDVFACAEEK 131

Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL++LD + DPHN GA+LR+A A    G++  +R   + +A +AK+++GA+EH+  
Sbjct: 132 GEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRV 191

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +RI N+   ++++   G   +G      + +        + +++G+EGKGL    +ET  
Sbjct: 192 VRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCD 251

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + M G I +LN S A A+ +Y  +   
Sbjct: 252 FLVRIPMHGAINSLNASVAGALLMYEARRAR 282


>gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD]
 gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD]
          Length = 260

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 103/257 (40%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H   A L+  +     + AT+ ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L     + P  + V ++ +++  D V 
Sbjct: 65  QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +             ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +       +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 278

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 15/271 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPS--RKIFQLLATKN 76
           ++  R  K+ ++  ++     +  +       L G + V  AL       +I      K 
Sbjct: 4   KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALKAGRGINRILVAQGAKE 63

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132
           A              PV+    + +D++      HQG+    AP+   +LD V       
Sbjct: 64  AALAPLLSLAREQGVPVRASKREKLDQLAPDMR-HQGVIAYAAPVAYASLDDVFACAEEK 122

Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL++LD + DPHN GA+LR+A A    G++  +R   + +A +AK+++GA+EH+  
Sbjct: 123 GEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRV 182

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +RI N+   ++++   G   +G      + +        + +++G+EGKGL    +ET  
Sbjct: 183 VRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCD 242

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + M G I +LN S A A+ +Y  +   
Sbjct: 243 FLVRIPMHGAINSLNASVAGALLMYEARRAR 273


>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
 gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
          Length = 314

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69
            ++  H AK R      ++ Q    Q+ R   +  +  + G ++V  AL      S    
Sbjct: 36  EMRKGH-AKQRAAQAKVRRAQGGRPQQRRGGGRSASELVVGRNSVVEALREGVPASTLYV 94

Query: 70  QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           Q     +   R             +   P   +D++      HQGL L+  P      + 
Sbjct: 95  QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153

Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++
Sbjct: 154 LVAGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213

Query: 182 GALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           GA    P  R +N          +        +    +       +  + +++G+EGKGL
Sbjct: 214 GAAARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGL 273

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ET      + MPG  ++LN   AA + LY      A
Sbjct: 274 SRLVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRRA 314


>gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 248

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL       +   ++  +       PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E          +L   L+    + LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244

Query: 281 A 281
            
Sbjct: 245 T 245


>gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 248

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++A+ N +  + ++L   +A         +    +   V+ V  Q +D I G
Sbjct: 7   WVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQARRYGIEVRKVATQALDGIGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A            ++A     LL+VLD V DPHN+GA LRSA+A    
Sbjct: 67  NVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSALAAGAT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +  S   +A + K+++GA + +P ++++NL   L+++   G    GL+ +  + L
Sbjct: 127 AVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGEVDETL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL+LG E  GLR  T+ET   +  + MPG +++LNVS AA V L+      
Sbjct: 187 YGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFEAVRQR 246


>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 258

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   A L + +RKI  +  T++AL+  D+
Sbjct: 8   SKDNPKIKHLRGLIEQNTYRKKQGQTVLEGTHLSLAWL-HENRKIDSIFTTEHALSHPDF 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L     +  V  +++ K +                 +      +   L++  ++V D
Sbjct: 67  EKILAKYTGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKADTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A   + I+ TK  +   S  + ++  GA   +       L   L++  
Sbjct: 125 PGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGAHFTLQTFENIALEQILEQFQ 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              + T    ++S    +          ILG EG+G+     + A     +  PG  ++L
Sbjct: 185 IPVYVTSSHRAESLYSKD---LRKPCVWILGNEGQGVSDYAMQHA-EAVSIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A ++  +       
Sbjct: 241 NVAIAGSICFFEMVRQRI 258


>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 249

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    NL       V T   +T+ K
Sbjct: 4   KEQDVIFGRNPVMEAIKSGKE-IEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G +     +AL          D        +    L++LD + DPHN+GAI+RSA AF
Sbjct: 63  LAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   +  
Sbjct: 123 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNGG 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y   
Sbjct: 183 KSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQVV 242

Query: 278 NHFA 281
           +   
Sbjct: 243 SKRK 246


>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 296

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 141/267 (52%), Positives = 182/267 (68%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +      +     +  + +           LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK   L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKITLFVTQNALARLEVDVEAL-GMPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis
           12822]
 gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis]
 gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS]
          Length = 245

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++      ++   +   +        V  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLAR 65

Query: 107 KEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A+     L       LD +    LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVVAVAEERSLAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A + + A GA + +PY+ ++NL   ++++       +G    + + + Q
Sbjct: 126 IAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMHQ 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A ++GAEG+G+R  T+ET   +  + M G +++LNVS A+AV LY +    
Sbjct: 186 VDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243


>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 12/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103
               ++GV+ V  AL    R+IF L       +       +        V     + + +
Sbjct: 2   REELVFGVNPVREALR-GKREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G  + HQG+AL+ AP     LD           +  L+VLD + DPHN+GA++R+A  
Sbjct: 61  MCG-SSHHQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G++  +  + + +    K+++GA+E I   +++N+  +L+K+   G+   GLS ++
Sbjct: 120 AGASGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L +   + KIAL++G EG+G+RP  ++   ++  + + G + +LN S A  +ALY  
Sbjct: 180 DASLYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEV 239

Query: 277 QN 278
             
Sbjct: 240 AR 241


>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
 gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
          Length = 265

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +        F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFAEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +    +    ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
 gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
          Length = 265

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +        F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +    +    ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
 gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
          Length = 254

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +        F+ G H V  A
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDNKALFFVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 97  EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPVVKGNLEEWVDKLKENNVPVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +    +    ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKSDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SSC/2]
          Length = 246

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +   + G + V  AL    P  KIF L   ++   R            +K V  + ++
Sbjct: 2   NHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTDAILKFVDKERLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +   HQG+    A     T++               ++LD + DPHN+GAI+R+A 
Sbjct: 62  QLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIEDPHNLGAIIRTAN 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  K  +   +  +AK+++GA+ + P ++++N+   + ++   G         
Sbjct: 120 LAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELKERGMWFACA-DM 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + + ++     I L++G EG G+    +E    ++ + M G I +LN S AA V  + 
Sbjct: 179 DGEVIYRQNLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           halifaxensis HAW-EB4]
          Length = 246

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V A L N   ++ ++   +     RL     +       V+    + +D+     
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDEKSD-G 66

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+  +  P    + + +           L++LD V DPHN+GA LR+A A    G+
Sbjct: 67  GQHQGVVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + ++   L Q
Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+      
Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC
           25196]
 gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 249

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 7/242 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
             + F++G H +++ L   +  + ++      ++  AR            +       + 
Sbjct: 2   SGSRFIFGFHAITSRLRQNAASVREVFLDAERRDQRARDLAALAEAQDIRLIACDNARLM 61

Query: 103 KIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            + G         +  +      +   LD +    LL+VLD + DPHN+GA LR A AF 
Sbjct: 62  ALAGNARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A + K ASGA +++PYI ++NL   L+ +   G   +G ++D+  
Sbjct: 122 VHAVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        IA +LG+E KG+R  T+E    +  + M G +++LNVS +A + L+ T  
Sbjct: 182 QLGVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5]
          Length = 243

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    + I +L   K A   L     D    H   V+ VP + ++++  
Sbjct: 4   IIFGIRPVAEAIEAGKQ-IEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  + + +    L  +        + L+++ D V D  N GAI RSA      
Sbjct: 62  -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + ++ + + GFQ +  +  S+K L
Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    AL++GAE  G+  +  +       + + G I++LNVS AAAV L+      
Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240

Query: 281 A 281
            
Sbjct: 241 I 241


>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
 gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
          Length = 265

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +        F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDTKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   S          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKESNVSVYGTA-LENGVPFGEVTPAGSFALIVGNEGSGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
 gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
          Length = 245

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKI 104
             F+ G + V  AL +  R+I ++   +       +        +   V+ VP + +D++
Sbjct: 1   MDFIIGKNPVIEALKS-EREINKIWIAEGVQRNSIQPIIQLAKQNGVLVQYVPKKKLDQM 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      +D               ++LD + DPHN+G+I+R+A A 
Sbjct: 60  V--EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAV 117

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR S   +A +AK+++GA+E++P  R++NL   + ++   G   +G  + +K
Sbjct: 118 GAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKERGVWIVGTDAKAK 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G+EGKG+     E    + HL M G + +LN S AA++ +Y   
Sbjct: 178 DDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVY 237

Query: 278 NHF 280
              
Sbjct: 238 RKR 240


>gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 270

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 102/264 (38%), Gaps = 8/264 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNAL 78
            +++   K++       ++  +     + G+     A+ +        K+  +  T+NA 
Sbjct: 5   SKDNPKIKQLAKLYVSRKYRRETGLFVIEGLRGCVDAVRDDVEHDGLLKVDGVYYTENAF 64

Query: 79  ARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
              +    +    P      +  +  D+I   ++             + + D ++     
Sbjct: 65  DSAEGFGEVLEKIPDSRRFVITREIADRISDTDSCQGVFVTAKRLDKALSADGLKAGGKY 124

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DP N+G ++R+A A   DG++ +       +    +SA G++  +      + 
Sbjct: 125 LVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVGSMPRVDIFVEKDF 184

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               + +   G +T     D    ++Q       A+++G EG+GL  +  E  +    + 
Sbjct: 185 EAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGCAVVIGNEGRGLSQEHVEMCSDRVTIK 244

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M G I +LN + AA + L+     
Sbjct: 245 MYGHIDSLNAATAATIFLWEMTRR 268


>gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
          Length = 314

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69
            ++  H AK R  +   ++      Q+ R   +  +  + G + V  AL      S    
Sbjct: 36  EMRKGH-AKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYV 94

Query: 70  QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           Q     +   R             +   P   +D++      HQGL L+  P      + 
Sbjct: 95  QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153

Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++
Sbjct: 154 LVAAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240
           G     P  R +NLT AL++    G   +GL++D +  L      +  + +++G+EGKGL
Sbjct: 214 GTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGL 273

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ET      + MPG  ++LN   AA + LY      +
Sbjct: 274 SRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314


>gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF   G   +     
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNGTPSD 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 257

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF   G   +     
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNGTPSD 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
          Length = 286

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 17/283 (6%)

Query: 13  FSLKDSHYAKL----RRNHR-DYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
               + H +K     ++ +R   KK    NQ     ++      F++G H    AL    
Sbjct: 3   KERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGR 62

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    
Sbjct: 63  GNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETLSDH-GVHQGVVLAITPYEYL 121

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LD         +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ 
Sbjct: 122 SLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVT 181

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EH+P  R++NL  A+Q++   GF   G         +   K   IAL++G EG
Sbjct: 182 KTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAK-GSIALVIGNEG 240

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++    +  + M G +++LN S AA + +Y   +  
Sbjct: 241 KGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           sulfurreducens PCA]
 gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 245

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   LYG+++V  AL   SR+ F+L  ++    R              PV+T   + + +
Sbjct: 2   KEEILYGINSVMEALR-GSRRAFELFVSRETHDRRTEKLLAFAAERGVPVRTRDKRDLAR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+AL         L+ +  S        L++VLD + DPHN+GA++RSA  
Sbjct: 61  LCGTD-HHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  +   +A + K ++GA E IP  +++N+  AL+ +   GF   G +  +
Sbjct: 120 AGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L        + +++G EG+G+RP  ++    +  + + G + +LN S A  V L+  
Sbjct: 180 ASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
           A3(2)]
          Length = 314

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIF 69
            ++  H AK R  +   ++      Q+ R   +  +  + G + V  AL      S    
Sbjct: 36  EMRKGH-AKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYV 94

Query: 70  QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           Q     +   R             +   P   +D++      HQGL L+  P      + 
Sbjct: 95  QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 153

Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++
Sbjct: 154 LVAAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 213

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240
           G     P  R +NLT AL++    G   +GL++D +  L      +  + +++G+EGKGL
Sbjct: 214 GTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGL 273

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ET      + MPG  ++LN   AA + LY      +
Sbjct: 274 SRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314


>gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 257

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +     
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGFWIFGTDMNGTPSD 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 277

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 9/260 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++   K++ +    +R   + +   L G H V +AL      +  L+ +++ L R + 
Sbjct: 11  SRDNAFVKRLHALAHSARDRRKLDETVLDGAHLVESALAAG-VALRALVVSESGLLREEH 69

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A  P   P   +       +   ++    LA    P  +P+     +   L+V+D 
Sbjct: 70  RRLLAAAPAEVPRYRLGDALFAHVSPVDSPAGLLATIAMPASTPSAPGDAS---LIVVDG 126

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G++LR+A A      +  +  + + S    ++  GA   +       L   L+
Sbjct: 127 VQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAGMGAQFVVRIEEGCELLARLE 186

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                         +   PL +      +A + GAEG+GL P     A     + M   I
Sbjct: 187 SYPGLCL--ATALREDAHPLYELDLRGPVAWLFGAEGQGLSPALLARADGCVIIPMTAGI 244

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAAV L+      
Sbjct: 245 ESLNVAAAAAVCLFEQARQL 264


>gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 313

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  KL +  RD         + RH  +     + G + V   L++ 
Sbjct: 37  TPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHS- 84

Query: 65  SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +    +A              P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATSLYIAEGTKNDARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +              +++VLD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 144 YKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + +++
Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVV 263

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKG+    +ET  S+  + M   +++LN S AA V L       
Sbjct: 264 GSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310


>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 313

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  KL +  RD         + RH  +     + G + V   L++ 
Sbjct: 37  TPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHS- 84

Query: 65  SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +    +A              P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATSLYIAEGTKNDARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +              +++VLD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 144 YKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + +++
Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVV 263

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKG+    +ET  S+  + M   +++LN S AA V L       
Sbjct: 264 GSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310


>gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 257

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +     
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 198 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +     
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
 gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L      K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D          + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +     
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNGTPSD 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 CWNT-NGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
 gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
          Length = 313

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 15/271 (5%)

Query: 23  LRRNHRDYKKMQS--FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKN 76
           L R +     + +   ++     SQ E   +YG H V  AL   +R+I ++        +
Sbjct: 25  LERRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALE-GTRQINRIWVISKLRYD 83

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129
           +           +   +  V P  + ++    A HQG+  + +P     L          
Sbjct: 84  SRFHSLLTQAKANGTVIDEVSPHRLTQLTD-GANHQGIVAQVSPYTYVELGDLIEQARAS 142

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + ++++ D + DPHN+GAI+R+  A    G++  +R +   ++ + K A+GALEH+P 
Sbjct: 143 TPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLPV 202

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ NL+ AL+++   GF   G  S   K L     +  + L++G+EG+GL   TQ    
Sbjct: 203 ARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRCCD 262

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++  + + G   +LN S AAA+ALY      
Sbjct: 263 ALISIPLAGKTPSLNASVAAAIALYEVYRQR 293


>gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L+     K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD         ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   +     
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNGTPSH 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 265

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 8/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S  +K +           G+  ++ A         ++L    +   L  D 
Sbjct: 9   SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGSTHPLAIDL 65

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V    P  + KI GK+     + +    L          + + +V   + 
Sbjct: 66  IAAMEAAGGDVIETTPDILSKISGKDNPQAVVGVYRDRLTPLAKLDRTKADIWIVAQSLR 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+  A    G+I         S    +++ GAL   P  +          +
Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQPITQARWGEFMH-WL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                + IG S  +    ++        L++G E +GL    +     +  + M G   +
Sbjct: 185 RQGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKADS 244

Query: 263 LNVSNAAAVALYITQNH-FAK 282
           LN + A AV  Y   N   AK
Sbjct: 245 LNAAVACAVMAYELLNQKRAK 265


>gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 246

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLL---SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P        LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-KGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P IR++NL   ++ +   G   +G + ++ +
Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
 gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
          Length = 246

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 53  GVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G + V  AL       KI      +        +       P++ V    ++K+ G    
Sbjct: 7   GRNQVREALRAGRPLNKILLAPHLEGQAIGEIINLARERGVPLQRVNRAALEKLAGHH-- 64

Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      L+              L++LD V DPHN+GAILRSA A    G+I
Sbjct: 65  HQGVVALAAAREYADLEDLLARAGEAGEPPFLIMLDRVEDPHNLGAILRSAEAVGAHGVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R     +A +A++A GA E++P  R++NL   L+++   G   IG + D+ +     
Sbjct: 125 IPRRRGVGLTAAVARAAVGAQEYVPVARVTNLARTLEELKGKGLWAIGAAGDAGQEAFNA 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + L+LG+EG+GL P  +       HL M G I +LNV+ AA V +Y       +
Sbjct: 185 DFTVPLVLVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQRGQ 243


>gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 250

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
           F+YGVH VSA L NP R   +L  +++ + +   D     +     ++ +  Q +++   
Sbjct: 5   FVYGVHAVSALLANPHRTTKKLFVSQDRVDKRLQDLVDKAVQARIGIEKLSTQQMNQRFA 64

Query: 107 KEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +             L   L++ ++  L+++LD + DPHN+GA LR+A A   D
Sbjct: 65  EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGVD 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S + V++K A GA E +P +R++NL  ++  +   G    G + +++  L
Sbjct: 125 FVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEAEHSL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      IAL++GAEG+GLR  T+E    +  L M G + +LNVS A  V+LY      
Sbjct: 185 YQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQR 244


>gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
 gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G + V  AL +     ++F L  + +   R            +  V  + +D+I  +
Sbjct: 7   VIEGRNAVLEALRSGKPVDRVFILAKSYDGPIRTIVREAKKRDCILSFVDKKRLDEIS-E 65

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     A     T++              L +LD++ DPHN+GAI+R+A      
Sbjct: 66  TGKHQGAIAYIAAYRYSTVEDILALARKRGEDPFLFLLDNIEDPHNLGAIIRTANLAGAH 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A +AK+++GA+ + P  +++NL+  ++++   G   +       + +
Sbjct: 126 GVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEELKKEGLWFVCA-DMDGQVM 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG G+    ++     A + M G I +LN S AA V  Y      
Sbjct: 185 YDLNLTGPIGLVIGNEGSGVGDLVRKHCDLFAAIPMAGEIDSLNASVAAGVLAYELVRQR 244


>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 317

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 114/274 (41%), Gaps = 13/274 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKN 76
           +AK R  +   ++        R  ++  N  + G + V  AL      +    Q     +
Sbjct: 45  HAKQRIANARTRQAAKRPAPRRGGAKGTNELVVGRNPVVEALREGVPANTLYVQQFIDSD 104

Query: 77  ALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128
              R             +   P   +D++      HQG+ L+  P      +        
Sbjct: 105 DRVREGLKIAADRGGIHLMEAPKAELDRMTNGL-NHQGMVLQVPPYDYAHPEDLSAAAFD 163

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G     P
Sbjct: 164 DGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQET 247
             R +NLT AL+     G   +GL++D +  L+  E  +  + +++G+EGKGL     ET
Sbjct: 224 VARATNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVIVVGSEGKGLSRLVGET 283

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + MPG  ++LN   AA V LY      +
Sbjct: 284 CDFRVRIPMPGGAESLNAGVAAGVVLYEASRRRS 317


>gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 250

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 5/243 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
               +L ++G + V  AL         L+A  +   R   +        V+ V  Q I++
Sbjct: 4   ENNNHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQKVSRQKIEE 63

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSC 159
           +   +     +AL +        + +  +     ++++LDH+ DP N+G+ILR+A  F  
Sbjct: 64  LANTKKTQGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  S   + V+ K+++GA+ H+P  ++ +L + ++K    G   +       + 
Sbjct: 124 SGVIIPKERSSPINEVVVKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVV-AIEKGGRN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +      IALI+G+EGKG+     E A  +A + M G I +LNVSNA ++AL+     
Sbjct: 183 IAEIDFPYPIALIVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKR 242

Query: 280 FAK 282
             K
Sbjct: 243 RIK 245


>gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
 gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
          Length = 249

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            EN  ++G+  V  A+       KI      +  L+R  ++       PV+ VP + +D+
Sbjct: 2   KENEMVFGIRAVIEAIQADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+      +    L+           +  +++LD V D  N GAI R+   
Sbjct: 62  LT--RKNHQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   R S + +A   K+++GAL  +   +  ++T+A++ + + G +    S  +
Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVKVYAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       +  +A+++GAE  G+         SM  +   G I +LNVS A+++ +Y  
Sbjct: 180 FENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 302

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 104/286 (36%), Gaps = 11/286 (3%)

Query: 3   LISKK-----KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57
           +I               L   +       +   K +      S+H  + +   L GVH +
Sbjct: 22  IIQSSHKPTYPHPCPHVLHKMNPVIQSPQNNQLKHLAKLLSASKHRREHQQTVLEGVHLL 81

Query: 58  SAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           SA L+  +      +    A    +           V  V    + KI      +  +AL
Sbjct: 82  SAYLDAGNTPEQVYVPEHRAQSPEIAALLCRLPANRVHLVSHNALRKISSLADANDIMAL 141

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              P  SP  +        +VL+ + D  N+GA+LRSA A     II +   + + +  +
Sbjct: 142 IALPQPSPLPEQGD----CVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKV 197

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++  GA   +      +LT    + H     T  LS  +   L         A I G E
Sbjct: 198 LRAGMGAHFLLHIHERVDLTQWRSQYHDRVLVTA-LSEHNNFSLYDLTLQQPSAWIFGNE 256

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G G+ P+ Q  AT+   + M G  ++LN++ AA V L+       K
Sbjct: 257 GSGVSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQRLK 302


>gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 263

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83
           +   K +++ + + +           G+  V  A++        +     A     +   
Sbjct: 11  NNTVKAVRALHMR-KEREDSGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAV 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A L     V  V  + ++K+  ++     +A+        +     ++   + +  V D
Sbjct: 70  AACLKAGGEVIEVNREILEKVSRRDNPQAVVAVFKQVFTPLSAIVPESAPCWVAMQAVRD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A  C G+I         S    ++  G++     I  + + + L    
Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIF-AVKIAKATIPEFLAWRE 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +W    +G    +    +         +++G E +GL P+          + M G   +L
Sbjct: 189 TWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 248

Query: 264 NVSNAAAVALY 274
           N+S A  + +Y
Sbjct: 249 NLSVATGIMIY 259


>gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium
           profundum SS9]
 gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 245

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++G+H V A L     ++ ++   K+    RL             ++    + +D     
Sbjct: 6   IFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQHAGRKALDDKAKG 65

Query: 108 EAVHQGLAL--ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +    +A       L    LD +     + LL++LD V DPHN+GA LR+A A     +
Sbjct: 66  ASHQGIIARVKPAKQLNEHDLDTILEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++   +  
Sbjct: 126 IIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+      
Sbjct: 186 SKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49]
          Length = 260

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V  S +++  
Sbjct: 61  HAEAQAIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPERVTQSSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAP--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                          S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSGPVAWVFGNEGAGVSAFWRDAAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 258

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +   L + G + V  A  +     K+F L   ++   R        H   +  V  + + 
Sbjct: 13  KEHTLVIEGRNAVLEAFRSGRTIDKLFVLDGCQDGPVRTIVREAKKHGTILNFVGKERLS 72

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +   HQG+    A      +D +            L+VLD + DPHN+GAI+R+A 
Sbjct: 73  QLT-QTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGEDPFLIVLDGIEDPHNLGAIIRTAN 131

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +    D
Sbjct: 132 IAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGIWFVCADMD 191

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +   +       I L++G EG G+    +E    +A + M G I +LN S A  V  Y 
Sbjct: 192 GQSMYDMN-LTGPIGLVVGNEGDGVSRLVKENCDFVASIPMKGEITSLNASVAGGVLAYE 250

Query: 276 TQNHF 280
                
Sbjct: 251 IVRQR 255


>gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +   +     + G H    A
Sbjct: 1   MKRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +       L+  ++A+      A+L    P   +       +   E   +  A+    
Sbjct: 42  LKSKGTVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC--- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +     + L+++D V DP N+G ++R+A A   D ++     +   S    +SA
Sbjct: 94  --HMPEEKPDPLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP ++        +              +           +  ALI+G EG G+
Sbjct: 152 QGSHFHIPILKRPLDEFIDELKSQGVAIYGTALENGAVYQ-SVKPEESFALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 211 DAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 248

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L+     K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD         ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   +     
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSH 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
 gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
          Length = 296

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 145/267 (54%), Positives = 187/267 (70%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +    +   + R     +          ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 245

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++G+H V A L     ++ ++   K+    RL             ++    + +D    K
Sbjct: 6   IFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQQAGRKALDDKA-K 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            A HQG+     P                 + LL++LD V DPHN+GA LR+A A     
Sbjct: 65  GASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNADAAGAAA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++   + 
Sbjct: 125 VIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATHDIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+      
Sbjct: 185 HSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis
           E264]
          Length = 281

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 7/264 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDG 76

Query: 77  ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           AL+  +    +    P + V  P  +   +       GL L  A       + V N+ ++
Sbjct: 77  ALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVV 136

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +  D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      + 
Sbjct: 137 L--DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++             S   + +        +A + G EG G+  + ++ AT    + 
Sbjct: 195 GTLIE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIP 251

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
            PG +++LNV+ AAAV L+     
Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275


>gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
 gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
          Length = 245

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI]
 gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 254

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V   
Sbjct: 1   MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEV 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 42  LKAG--VVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKVLRETETTQGVFAVCEKH 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +    + ++ + +S 
Sbjct: 97  ESEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRST 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 153 QGSIFHLPIVKGNLEEWVDKLKENNVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 212 RQEILAKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 248


>gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans K601]
          Length = 248

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R            +       + K+ G
Sbjct: 6   ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     +LD + +          LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   SA +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGISATVAKVASGAAETMPYFMVTNLARTLGELKERNIWVIGTSGDADK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY    
Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALR 245

Query: 279 HF 280
             
Sbjct: 246 QR 247


>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 248

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 14/249 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPP 98
              +   + ++G+H++  A+    R I ++   ++    L +  +     +  P + VP 
Sbjct: 3   KRVKENKM-IFGLHSIIEAIEAG-RDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPV 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           + ++     E  HQG     A +         PTL     + L++ LD V D  N GAI 
Sbjct: 61  EKLNSFT--EKNHQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAIS 118

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+      D I+     S + +A   K+++GAL ++P  R  NL  A++ + + GF  I 
Sbjct: 119 RTCECAGVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIA 178

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LS  +      +  +    L+LGAE +G+  +      S   + + G I++LNVS AA +
Sbjct: 179 LSEKANIAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGI 238

Query: 272 ALYITQNHF 280
            +Y      
Sbjct: 239 VIYEAVKSR 247


>gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
           CNPAF512]
          Length = 296

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +    +   + R     +          ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVEAL-DIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
 gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
          Length = 248

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 11/247 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +  +LYG+H+VSA L     ++ +L      ++            H    + +P +T+D
Sbjct: 2   SKQDWLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMD 61

Query: 103 KIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             + + AVHQG+A+            L   ++       L+ LD + DPHN+GA LRSA 
Sbjct: 62  HQLEEGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSS 214
           A     +ITT+  S   SA + K A GA E +P+I+++NL   L+ +     +      S
Sbjct: 122 AAGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALS 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  K + +      I +++GAEG GLR  TQ+    + ++ M G +++LNVS A  V L+
Sbjct: 182 EGAKTIYETDLRGNIGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLF 241

Query: 275 ITQNHFA 281
                 +
Sbjct: 242 EALRQRS 248


>gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
 gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
          Length = 250

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E   + G + V  A        K++     K+   +            V  V  + +++
Sbjct: 7   TEEFIIEGRNAVLEAFRAGKTIDKLYVQEGIKDGPVQSIIREAKKQDTIVNFVSRERLNQ 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  +      +A   A   +   D ++          + +LD + DPHN+GAI+R+A   
Sbjct: 67  MSQEGRHQGVIAHAAAYEYAEVEDILKAAEEKGEPPFIFLLDGIEDPHNLGAIIRTANLA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +AV+AK+++GAL + P  +++NL   ++++   G   +     + 
Sbjct: 127 GAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVTNLAATIEELKEKGLWFVCA-DMNG 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +      I L++G+EG G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 186 ELMYRLNLKGPIGLVIGSEGDGVGRLVREKCDMVASIPMKGDIDSLNASVAAGVLAYEIV 245

Query: 278 NHF 280
              
Sbjct: 246 RQR 248


>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 236

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 106/236 (44%), Gaps = 7/236 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +++G +TV+A L +  +    L        +            V+ V    +DK+     
Sbjct: 4   YIFGKNTVTAYLKSGQKPKN-LYLFNKGNYQEIVALAKEQGIRVQFVDKFRLDKMAD--G 60

Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           VHQG+ +E       +L  +     + L+++ D + DPHN+GAILR+  A   DG++  K
Sbjct: 61  VHQGVVIEIQDYKYHSLQEIIKGAKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIK 225
             S   ++ +AK ++GA+  +     +N+  A+ +   +  +     ++       +   
Sbjct: 121 HRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNV 180

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + L++G+EGKG+    ++    +  + M G + +LNVS A  V L+       
Sbjct: 181 DMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRRK 236


>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
 gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGK 107
           + G + V  A+ +  R I ++   +    +              P++      +DK    
Sbjct: 4   IEGRNPVIEAIKSG-RTIKKIFIQEGVRGKKVDRIIKEASRFNIPLQKAKKDFLDKKARS 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + HQG+      +   +   +            +++LD V DPHN+GAI+R+A A    
Sbjct: 63  HS-HQGIIAMADDIKYVSPREMVEIAREKGEDPFIIILDQVQDPHNLGAIIRTAYAAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  ++ S   + V+ K+++GA+ H+P  ++SN+   +  +   G    G      +P 
Sbjct: 122 GLIYPRKRSADITPVVTKASAGAVNHLPLAKVSNINYTIADLKDMGLWITGTDVRGTRPY 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L++G EGKG+R   +E    + ++ M G + +LN S AA V ++      
Sbjct: 182 YSADYKGPVGLVIGNEGKGMRRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241


>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
 gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
          Length = 250

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +     + G + V  AL +     K++     K +      D        V+ VP + +D
Sbjct: 3   EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++    A HQG+    A      L+         +     ++LD + DPHN+G+I+R+A 
Sbjct: 63  QLSS--ANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPHNLGSIMRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   G    G  + 
Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKERGIWIAGTDAK 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +Y 
Sbjct: 181 GSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VYRKR 245


>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 314

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70
             +  H  K R  +   K+ Q     ++   +  +  + G + V  AL +         Q
Sbjct: 36  EARKGHV-KNRLANAKVKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 93

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 94  QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 152

Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                   +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 153 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  + +    +  + +++G+EGKGL 
Sbjct: 213 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 272

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313


>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 302

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 142/269 (52%), Positives = 183/269 (68%), Gaps = 14/269 (5%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVS 58
            S KD+HYA LRR HRD K+ +        QK +             P+ ++LYG+HTV 
Sbjct: 19  KSAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVR 78

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AAL NP RK  +L  T+NAL RL+         P + V PQ IDK++G EA+HQG+ LET
Sbjct: 79  AALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLET 138

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF    +ITT+R+SP+ES VLAK
Sbjct: 139 RPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAK 198

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SASGALE IPYI+I+NL DAL ++H  GF +IGL S+   PLE     +K+AL+LG+EGK
Sbjct: 199 SASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGK 258

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GLR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 259 GLRQKTRETVNALARLDMPGAIKSLNVSN 287


>gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 242

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241


>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 263

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 93/269 (34%), Gaps = 12/269 (4%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+           ++  K +++ + + +   +       G+  +  AL+     +  +
Sbjct: 2   IKSVTSLT-------NQTVKDIRALHMR-KEREETGRFLAEGLKIIIDALDQGFAPLILV 53

Query: 72  LATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
               +    +   A    L     V  V  + ++KI  K+     +A+    + S     
Sbjct: 54  FGKSDDRHPMLERAIRETLAVEGEVLEVTREILEKISRKDNPQMVVAVFAQQVKSLADID 113

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             ++ + + L+ + DP N+G I+R+A A    G+I         S    ++  G++    
Sbjct: 114 PNSNAVWVALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVF-AL 172

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +        L     W    +G    +              +++G E  GL P      
Sbjct: 173 PVVKCTREAFLADRSRWTGSVVGTLLTATHNHRTADYRRPTLILMGTEQSGLTPDIAAAC 232

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   + M G   +LN+S A  + +Y   
Sbjct: 233 DTHVKIPMRGRADSLNLSVATGIMIYAAA 261


>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
 gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
          Length = 268

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 31/289 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+   + KI                  K +   N+ +    + +   + G+      
Sbjct: 1   MEIITANSNPKI------------------KNINKLNKNASFRKEEQVFIVEGIRMFREL 42

Query: 61  LNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-- 114
              P  ++ Q+  ++ A  R    L           +  V       +   +     L  
Sbjct: 43  ---PVDRVKQVFVSETAYQRYGTELPEKGITEQDRRLVVVSDSVFRSMSQTKTPQGLLAV 99

Query: 115 ---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                 T   L   +D   N    +VL+ + DP N+G I+R+A A    GII        
Sbjct: 100 VERYHYTMEDLISVMDKRENGNTFLVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDI 159

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + +S  G +  +P++ + +   A+ ++   G    G   D    L         A 
Sbjct: 160 YNPKVVRSTMGTIFRVPFVYVDDPAKAVDRLKEHGIVVYGAHLD-GCDLYAGKLKRNNAF 218

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G EG GL  +    A  +  + M G +++LN + +A +  Y      
Sbjct: 219 LIGNEGNGLTDELSSKADRLLRIPMAGQVESLNAAISATLLAYEAYRQR 267


>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
          Length = 263

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K +      +R   +       G H + AAL+     + +L+ +++  AR + 
Sbjct: 6   SRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGW-PLKRLVVSESGYARAEI 64

Query: 84  DANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            + L       P   +    +  +   +     LA+   P  +P   A  +   L+VLD 
Sbjct: 65  RSLLERAPATIPALKLDDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGAS---LVVLDG 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G ILR+A A   + ++ T   +   S    ++  GA  H+     ++L   L 
Sbjct: 122 VQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLRIHECTDLAGLLA 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                            K L +      +A + GAEG+GL    +  AT    + M   I
Sbjct: 182 TYPGAVL--ATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGI 239

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LNV+ AAAV L+  +   A
Sbjct: 240 ESLNVAAAAAVCLFEQRRQRA 260


>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 286

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +     +       R+ +  + LD V 
Sbjct: 82  AARTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWMPLRDIRPRDGETWVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPVARAAPEEFIAWRK 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +   + L++G E  GL  +    A ++A +   G   +
Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQLAGQADALARIPQQGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 262 LNLAVATAVMLFEARRHL 279


>gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 101/274 (36%), Gaps = 23/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+ K+         KL+ N+                 + +   L G H V  A
Sbjct: 1   MEKISSTKNSKVKEW-----VKLKTNN--------------GRKKFKKFLLEGRHPVETA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L   +   F ++     L  L    +      V     + +   +      QG+ L    
Sbjct: 42  LEQATEYEFLIVQEDFDLGELAEQVDNDKLILVT----KEVANHISDTVHDQGIFLIGYI 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      S   +VLD+V DP NIG ++R+A A    G++     +   +  + ++ 
Sbjct: 98  NEEDWQFPDDLSGKWLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+   R++                  +  ++ +   +    D+ +LI+G EG G+
Sbjct: 158 QGSQYHLQLKRLNLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E      ++ + G  ++LNV+ AA V ++
Sbjct: 218 SERLIEMTDMNLYIPIKGSAESLNVAVAAGVLMF 251


>gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
 gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
          Length = 247

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N +++G+H   A L     +  ++   K     RL    N      F ++ +P +T+D  
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+                 + +  ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-KGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 259

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 113/257 (43%), Positives = 158/257 (61%), Gaps = 1/257 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           +R     ++ +S   +    +  + + LYG H V+ AL NP R + +LLAT+NALARL  
Sbjct: 4   KRTAPRDRRHRSGADRRAAPAGDDRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +       P + V P  I  +VG +AVHQGL LE  PL +P  D +    +L+ LD + D
Sbjct: 64  ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A AF+   I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL  + 
Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF  IGL S++  PL+Q      + ++LGAEGKGLR +T+E    MA L  PG IK+L
Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242

Query: 264 NVSNAAAVALYITQNHF 280
           NVSNAAA+ LY      
Sbjct: 243 NVSNAAAITLYALAPRR 259


>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           sphaericus C3-41]
 gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
           [Lysinibacillus sphaericus C3-41]
          Length = 250

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +     + G + V  AL +     K++     K +      D        V+ VP + +D
Sbjct: 3   EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++    A HQG+    A      L+         +     ++LD + DPHN+G+I+R+A 
Sbjct: 63  QLSS--ANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S S +AV+AKS++GA+EH+P +R++NL   + ++   G    G  + 
Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKERGIWIAGTDAK 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +Y 
Sbjct: 181 GSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VYRKR 245


>gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
          Length = 247

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        +   +  VP + +D+I    
Sbjct: 8   IEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQISETG 67

Query: 109 AVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D ++          L++LD + DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GAL + P  +++NLT  ++ +   G   +      +   + 
Sbjct: 128 IIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYKM 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 188 N-LKGSIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
 gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
          Length = 246

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+            +        + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+        +     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 264

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + + ++      ++A  R   D        +       + K+ G
Sbjct: 22  VLFGFHAVGVRLKTAPQSVLEVFFDASRRDARMRQFTDRAREAGVRLIESDGLRLAKMCG 81

Query: 107 KEAVHQGLALETA---------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+               LL    +A     LL+VLD V DPHN+GA LR A   
Sbjct: 82  SHG-HQGVVARVDAVAQVKSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 140

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 141 GAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 200

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        +AL+LGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 201 KTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 260

Query: 278 NHFA 281
              +
Sbjct: 261 RQRS 264


>gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
 gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
          Length = 245

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA LN    ++ ++   K     RL    N  H     V+ V  QT+DK    
Sbjct: 5   IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D       + S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 65  EVHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  K  S   S++  K A GA E IP IR++NL   L+ + +     +  ++        
Sbjct: 125 IVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIWVVGTAGEATETLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 185 QAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU121]
          Length = 248

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 2   EDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  S--TAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ + GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
          Length = 246

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++G+H+V  AL       KI+   A  +   R           PV  VP + +++    
Sbjct: 6   IIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIPVLEVPAERLNRFT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     A +    L+             L+++L+ V D  N GAI RSA      
Sbjct: 64  RGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAECAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +R S S SA    +++GAL  IP  R+ +++ A+  +   G Q +  +  ++   
Sbjct: 124 ALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKAENTY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +AL++G+E +G+ P+    AT    +   G I +LNVS AA + L+ +   
Sbjct: 184 YTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESLRQ 242


>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
 gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
          Length = 286

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +             +  +  + LD V 
Sbjct: 82  AARTVASGGLVLEVSEKVIAAITRRDNPQMVVGIFEQRWAPLKGIRPQEGETWVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +     L++G E  GL  +    A ++A +   G   +
Sbjct: 202 SAGVSIVATHLAGAVDYRTIDYRKKPTVLLMGNEQSGLPDQLAREADALARIPQQGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 262 LNLAVATAVMLFEARRHL 279


>gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 253

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL N S +I ++     TK+       +        VK V    IDK+  K
Sbjct: 4   IEGKNPVKEAL-NSSTQITEVYISNTTKDKSISEIINLCKQKGIVVKFVDKSKIDKMS-K 61

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D              L++LD + DPHN G+I+RSA      
Sbjct: 62  TKNPQGVIAIAQEYKYWDIDDLLLEAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GIIT  R S   +  + K+++GA+EHI   R+ NL   +  +   G       ++++K +
Sbjct: 122 GIITEARNSCPITPTVEKASAGAIEHIKVARVVNLRRTIDSLKEKGVWVYAADNNAEKFV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I +I+G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YDCDFKIPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQR 241


>gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           thermophilus ND03]
          Length = 247

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L      K++     +                 +   P +
Sbjct: 2   KTTKESILDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L           + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTASHKWNTA-GKLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
 gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 249

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 41  RHTS-QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++      N  +YGVH V+ +L  N   K++     +        +        +   P 
Sbjct: 2   KNREFNETNDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWTPK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152
           +T+  +    AVHQG  L  +      LD          + L+++LD +NDPHN G+ILR
Sbjct: 62  KTLSDMT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G 
Sbjct: 121 TADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +     +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV 
Sbjct: 181 DMNGTPSHKWNT-SGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVL 239

Query: 273 LYITQNH 279
           +Y    H
Sbjct: 240 MYEVFRH 246


>gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44]
 gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44]
          Length = 256

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A       + TLD + +          LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEEVKDTRTLDELLDDLEEEGVKAPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L+++   G   IG S D+ K
Sbjct: 126 VHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDADK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q       AL+LGAEG G+R  T++T  ++  + M G +++LNVS A+ V LY    
Sbjct: 186 HLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALR 245

Query: 279 HF 280
             
Sbjct: 246 QR 247


>gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
 gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
          Length = 249

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L   ++ I +L   +N      R   +        V       ++ +  
Sbjct: 6   LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAMA- 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   LD +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G     +  L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+   
Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQR 243


>gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
 gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
          Length = 260

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    +    +     L G H   A L+  +     + AT+ ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++ +++  D V 
Sbjct: 65  QAIIARIDAQRVVTLPDALFGQLSNVVNGVGFLLLVERPAQPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +             ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAGRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +       +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +   +   +    A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 271

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKIVG 106
            +YG H    A       +  +         RL+   +        V+ V  + +D++  
Sbjct: 25  LVYGQHAAREAAAYDPAGVEAVWVEHGRRDARLERLLDKLGRQGVTVERVHRRVLDQMA- 83

Query: 107 KEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +   HQG+ L  +   +        L       LL+VLD V DPHN+GA +RSA A    
Sbjct: 84  EGGNHQGIVLRYSGTPARGEGELADLVDAEPEPLLLVLDRVQDPHNLGACMRSAAAAGAH 143

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +  + + S  + K+A+GA++ IP+ +++NL   LQ++   G   +G + +++K  
Sbjct: 144 GVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVTNLARTLQQLRDAGVHVVGAAGEAEKSC 203

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL+LG EG+GLR  T+E       + MPG +++LNVS AA V L+      
Sbjct: 204 YEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMESLNVSVAAGVLLFEAVRQR 263


>gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 112/280 (40%), Gaps = 14/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
            ++  H AK R  +   K+        R   +  N  + G + V  AL      S    Q
Sbjct: 40  EMRKGH-AKQRVANARAKQAARRPAPRRGGGKGTNELVVGRNPVVEALREGVPASMLYVQ 98

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 99  QFIDSDERVREALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 157

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 158 LDAAAEEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL +D    ++     +  + ++ G+EGKGL 
Sbjct: 218 TAARTPVARATNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLS 277

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET   +  + MPG  ++LN   A  V LY    H +
Sbjct: 278 RLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRHRS 317


>gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
 gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
          Length = 291

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 13/258 (5%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPH 89
           +S +  S    + ++  +YG H+V AAL    R++ ++        +         +   
Sbjct: 29  RSQSNTSAEPQETDDDLIYGRHSVLAALE-GDRQLNRIWITNRLHYDPRFHNLIQGSKAK 87

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142
              +  V  Q + +I    A HQG+A + AP     LD          ++ ++++ D + 
Sbjct: 88  GAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDAPVIVIADGIA 146

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A A  C G+I  +R +   ++ ++K A+GALE  P  R+ NL+ AL+ +
Sbjct: 147 DPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRALETL 206

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G  ++  K L        I L++G+EG GL   TQ     +  + + G   +
Sbjct: 207 KKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVSIPLEGKTPS 266

Query: 263 LNVSNAAAVALYITQNHF 280
           LN S AAA+ LY      
Sbjct: 267 LNASVAAAINLYEIYRQR 284


>gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
 gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 2   EDIVIVGRHAVKEAIISGHSINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  S--TAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ S GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
 gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  + + K     K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N   KI  +   +  + R+           V  V  + +  +   +     +A     
Sbjct: 40  V-NAQAKIRHIFVLEEFVDRVQDFPQ------VYVVTAEILADLADSKTPQGIVAELAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +            + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S 
Sbjct: 93  EATIP---SVLKGKYLFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           +         S       +       AL+LG EG+G+
Sbjct: 150 QGSHFHLPIYRVKTADFLDLAKQAQLPILATTLSKDSMDYRKLAPLSNFALVLGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
          Length = 249

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            EN  ++G+  V  A+       KI      +  L+R  ++       PV+ VP + +D+
Sbjct: 2   KENEMVFGIRAVIEAIQADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+      +    L+           +  +++LD V D  N GAI R+   
Sbjct: 62  LT--RKNHQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   R S + +A   K+++GAL  +P  +  ++T+A++ + + G +    S  +
Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVKVYAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       +  +A+++GAE  G+         SM  +   G I +LNVS A+++ +Y  
Sbjct: 180 FENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 307

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 116/283 (40%), Gaps = 29/283 (10%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPE-----------NLFLYGVHTVSAALNNPSRKIFQLLA 73
           R  +  K+  +  + +R                    L G + V  AL    R+I ++  
Sbjct: 26  RRTKTAKRYDNSLKVARERENTGGHADTEKIATREDRLEGRNPVIEALRAG-RQIDKIWV 84

Query: 74  TKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
                 R          +  +     V  VP   +D +  +   HQG+  + A +    +
Sbjct: 85  QAMGDGRRPEPTLAGIVNMAISSGAVVNQVPRSVLDNMS-QTGAHQGVIAQAAVIPYVDI 143

Query: 127 DAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           D +       +    +++ D + D +N+GAILR+A +    G++  K    +  AV AK+
Sbjct: 144 DEILAVAAAKQEDPFIIIADEIQDSYNLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKA 203

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++GA+ H+P  R++NL   +  +   G    GL+ D +   + +     IAL++G EGKG
Sbjct: 204 SAGAVNHVPCARVNNLVQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKG 263

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
           +     +       + M G++ +LN + A  +A++        
Sbjct: 264 ISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLRLRQR 306


>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 325

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D      AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154

Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                               LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               K ++GA   +P  R +NL  AL++    G+  +GL      PL      +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  AK
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324


>gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 235

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + +  A+    RKI+QL   +     L       H    + V  + +  +  K+ 
Sbjct: 2   IIYGKNPIKEAIKA-QRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQK 59

Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            HQG+A          LD        Q  ++LD +NDPHN+GAILR+  A + DG+I +K
Sbjct: 60  THQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMSK 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           +     ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q  KN
Sbjct: 120 KNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPKN 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + +I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y
Sbjct: 180 SSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIY 227


>gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L+     K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD         ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+   R++NL+  L K+ + GF T G   +     
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMNGTPSH 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 189 RWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 268

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 118/263 (44%), Gaps = 11/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84
           N+   K++ ++ +KS+   + +   + G+  +  A   P  ++ ++  T   L +  + D
Sbjct: 6   NNDRVKQVVNYIEKSKARREDDVFVIEGMKMLREA---PVLQVREVYVTTRFLDKASEED 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMV 137
             +   +  + V  + + K+   +     +A+ +    +          D      L++V
Sbjct: 63  KEILWRYGAEEVSDEVMKKMAATQTPQGVIAVISQYHYTMEEVLEGYNQDDEGAKPLILV 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+++ DP N+G +LRS       GII +K  +   +  + +S  G++  +P+I + ++ +
Sbjct: 123 LENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVESIPE 182

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+ + + G  T       +K  ++       A ++G EG GL  +T + A +   + M 
Sbjct: 183 VLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYILIPMK 242

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G ++++N + ++A+  +      
Sbjct: 243 GEVESMNAATSSAILTFEASRQR 265


>gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 259

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 13/258 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89
           MQ+F +  R   +  N  ++G+  V  A+++    I  L   +    +L          H
Sbjct: 1   MQNFQRHDRSEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKSLIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVN 142
               + VP + +++I      HQG+    +P+    ++           + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRIT--RKNHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS +A V LY      
Sbjct: 238 LNVSVSAGVVLYEAIRQR 255


>gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402]
 gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 263

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 49  LFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + G H V +A+ +     K+        +      +        V+TVP   +D +  
Sbjct: 22  EIIVGRHAVKSAVTSGHEINKVLIQEGINKSQISNLLNLCKEKKIVVQTVPKSKLDHLSD 81

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+    +P     L+             +M+LD + DPHN+G+I+R+A A   D
Sbjct: 82  --VPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHNLGSIIRTADAIGID 139

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  KR S S +  + K+++GA+EH+P +R++N+  A+ K+   G+   G  +      
Sbjct: 140 GIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAGYWVAGTDAKQSVDY 199

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   +  +A+++G+EG+G+    +E    + HL M G + +LN S AA++ +Y      
Sbjct: 200 RKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYRKR 259

Query: 281 A 281
            
Sbjct: 260 N 260


>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
 gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
          Length = 250

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +     + G + V  AL +     K++     K +      D        V+ VP + +D
Sbjct: 3   EQNGEIIAGKNPVLEALRSGRDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKKVD 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++    A HQG+    A      L+         +     ++LD + DPHN+G+I+R+A 
Sbjct: 63  QLSS--ANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   G    G  + 
Sbjct: 121 AIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKERGVWIAGTDAK 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +Y 
Sbjct: 181 GSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLMYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VYRKR 245


>gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76]
 gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4000]
 gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0017]
 gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0027]
 gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2141]
 gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4244]
 gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0012]
 gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0031]
 gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0043]
 gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0312]
 gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0645]
 gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1302]
 gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1341]
 gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1342]
 gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1346]
 gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0630]
 gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Enterococcus faecalis 62]
 gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1467]
          Length = 285

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42]
 gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 105/277 (37%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +   +     + G H    A
Sbjct: 1   MKRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +       L+  ++A+      A+L    P   +       +   E   +  A+    
Sbjct: 42  LKSKGTVKEILVNDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC--- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                       + L+++D V DP N+G ++R+A A   D ++  +  +   +    +SA
Sbjct: 94  --HMPDKRPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP ++     +   ++ S G    G + ++    +     +  ALI+G EG G+
Sbjct: 152 QGSHFHIPILKRPLD-EFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 211 DAGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
 gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
          Length = 278

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 85/270 (31%), Gaps = 7/270 (2%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            +  +      R H  +KK+    + SR         L G+H + + L +       +++
Sbjct: 2   QITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVS 61

Query: 74  TKNALARLDWDANLPHPFPVKTVP----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                                          +   +       G+               
Sbjct: 62  ESGGQHAEINQLLGSIGKDFGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSVDS 121

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + L+ + DP N+G+ILRSAVA        +   + S S    ++  GA   +  
Sbjct: 122 YEDSFCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSLRI 181

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S+L   +Q    +    I  +      +        +    G EG G+  +  E   
Sbjct: 182 HEDSDL---IQIACQFNGNVIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLEVVR 238

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + MPG  ++LNV+ AAA+ L+     
Sbjct: 239 ERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268


>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
           sibiricum 255-15]
          Length = 254

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
               FLYG + V  AL +     K+F     +     +            + VP   +  
Sbjct: 7   EGQDFLYGRNPVLEALRSGREMNKLFIQEGQQKGPLAVIHAMAKEAGVQTQIVPRSKLHG 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      LD +         + L+++LD + DPHN+G+ILR+A A
Sbjct: 67  LTGSD-NHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILRTADA 125

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR S   + V+AK+++GA+EHIP +R++NLT  ++ +   G   +G  +  
Sbjct: 126 VGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGTDARE 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + +++G+EGKG+    +E    + HL M G + +LN S AA++ LY  
Sbjct: 186 SDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYEV 245

Query: 277 QNHFA 281
                
Sbjct: 246 YRTRK 250


>gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
 gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 22/293 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTV 57
           M+     +S++  S K              K +   + + R    T Q ++  +YG H+V
Sbjct: 1   MSNKPIPRSDRRSSKK--------PRFSGKKSVVISSPQPRANTQTEQSDDDLIYGRHSV 52

Query: 58  SAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            AAL +  +     +      +        A+      +  V  Q + +I    A HQG+
Sbjct: 53  LAALESDRQLNRIWITNRLHYDPRFHNLIQASKAKGAVIDEVSVQRLSQIT-NGANHQGV 111

Query: 115 ALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           A + AP     LD          +  ++++ D ++DPHN+GAI+R+A A  C G+I  +R
Sbjct: 112 AAQVAPYNYHDLDGLIAQAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQR 171

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   ++ ++K A+GALE  P  R+ NL+ AL+ + + GF   G  S+  K L+      
Sbjct: 172 RAAGVTSTVSKVAAGALESFPVARVVNLSRALETLKAEGFWIYGTVSEGGKRLQDFNFRG 231

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            I L++G+EG GL   TQ     +  + + G   +LN S AAA+ LY      
Sbjct: 232 AIGLVIGSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQR 284


>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 287

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 95/259 (36%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ + K +H  +  +    G+  V  A++     I  L+  K    +   + 
Sbjct: 23  SNPVIKDIRALSMK-KHRDETGSFLAEGLKLVIDAIDQGWN-IRTLIYAKAQRGKPQVEK 80

Query: 86  NLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V  V  + +  I  ++     +A+    L      A +  +  + LD V
Sbjct: 81  IAALTVARGGLVLEVSEKVLTAITRRDNPQAVIAVFEQKLTPLDAVAPKPDETWIALDRV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    G+I         S    ++  G++  +P +R S        
Sbjct: 141 RDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRATMGSIFAMPLLRASEAEFLTWS 200

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +           S        K   + L++G E  GL     ++   +A +   G   
Sbjct: 201 KKTAPLVVGSHLKGSVDYRTIAYKGRPVVLLMGNEQAGLPDTLAQSCGKLARIPQTGRAD 260

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN++ A  V L+  + H 
Sbjct: 261 SLNLAIATGVMLFEARRHL 279


>gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942]
 gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           7942]
          Length = 234

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 3/234 (1%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
               L G H +  A+      +                       P +TV    +  +  
Sbjct: 2   GAFLLEGTHLLQEAIATNWPLLQVCATPAWQNQHPQLWQQAIQAAPEQTVSDDLLAYLCT 61

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  +A+              ++ LL+ ++ + DP N+G I+R+A A   DG+  T 
Sbjct: 62  TVNPDGVVAIAARQPQRQP---PTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTA 118

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                +   + ++++G    +P    ++L   L+     G+Q +     +   L Q    
Sbjct: 119 DGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLT 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               L+LG EG GL P     A S   +     +++LNV+ AAA+ LY  +   
Sbjct: 179 RPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232


>gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
 gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
          Length = 276

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 103/270 (38%), Gaps = 13/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            +  R +R   K +    K ++  QP+ + ++G+ +V   L +  + I +L   K     
Sbjct: 4   RRNPRVNRPNYKPRPGGSKPQYQPQPDEM-VFGIQSVIETLKSDQQ-IDKLYMEKGLSNP 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133
              +        ++ VP + +D+       HQG+    A +    L              
Sbjct: 62  DIQNLAFQKRVTIQRVPVERLDRFT--RKNHQGVVCLIAQVQYVKLSNVIADVFERGEVP 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + D  N GAI R+A       I+   R + + ++   K++SGAL HI   R  
Sbjct: 120 FFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGALNHISVCREP 179

Query: 194 N--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +   T    +            S              +A+I+G+E  G+ P+      + 
Sbjct: 180 DLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGISPELLRMVDTH 239

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + + G + +LNVS A  V LY      +
Sbjct: 240 VKIPLLGAVGSLNVSVATGVILYEAVRQRS 269


>gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
 gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
          Length = 260

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    +    +     L G H   A L+  +     + AT+ ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALAHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L     + P  + V ++ +++  D V 
Sbjct: 65  QAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +             ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAGRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +       +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGTQAVYDCD---LAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421]
          Length = 265

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 2/256 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  +  ++         + G H V+AAL       F                
Sbjct: 6   QNPVIKQLRKLHA-AKERQAQGLFLVEGTHPVAAALAGGWELEFVCATEAWVGEHPAMHT 64

Query: 86  NLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            L       +TV P  I+ +         +A       +      R+  LL++ + + DP
Sbjct: 65  ALSGRAGRYETVAPAVIEALADTVHPSGVVAAVRRRADAWRPLLERDVSLLVLGERLQDP 124

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++RS  A   DG++ +      +   + ++++G     P + + +LT  +  +  
Sbjct: 125 GNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFRSPPLSVPDLTACVADLVR 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +   + + + L +       A +LG+EG+GL    +        + +   +++LN
Sbjct: 185 RGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCLPERVGIPLAPGVESLN 244

Query: 265 VSNAAAVALYITQNHF 280
           V+ + A+ L+      
Sbjct: 245 VAVSGALLLFEAARQR 260


>gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
          Length = 312

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 15/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
             +  H  K R  +   K+ Q+   K+R   +  +  + G + V  AL +    S    Q
Sbjct: 36  EARKGHV-KNRLANAKAKQ-QARRPKARPGQRSTSELVVGRNPVYEALRDGVPASTLYVQ 93

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 94  QFIDNDERVRDALALAAERGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHAEDL 152

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L+++LD V DP N+GA++RS  AF   G++  +R +   +A   KS++G
Sbjct: 153 TAAAYDAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
           A    P  R +NLT  L+     G   +GL++D +  +         +A+++G+EGKGL 
Sbjct: 213 AAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEADVTDLPALEGPVAIVVGSEGKGLS 272

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY      A
Sbjct: 273 RLVGETCDIRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 312


>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 265

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 8/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S  +K +           G+  ++ A         ++L    +   L  + 
Sbjct: 9   SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGSTHPLAAEL 65

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V    P  + KI GK+     + +    L          S + +V   + 
Sbjct: 66  IAAMEAAGGDVIETTPDILAKISGKDNPQAVVGVYRDRLTPLAKLDRGKSDIWIVAQSLR 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+  A    G+I         S    +++ GAL      +          +
Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQARWGEFMH-WL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                + IG S  +    ++        L++G E +GL    +     +  + M G   +
Sbjct: 185 REGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKADS 244

Query: 263 LNVSNAAAVALYITQNH-FAK 282
           LN + A AV  Y   N   AK
Sbjct: 245 LNAAVACAVMAYELLNQKRAK 265


>gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
 gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
          Length = 241

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+++    I  L   +     L +   D         + VP + +D+I   
Sbjct: 2   VFGIRAVIEAIDSGKE-IESLFIQRGLTGELFKELKDVLRNRNIGYQQVPIEKLDRIT-- 58

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    +P+    ++ V  +        L+++LD + D  N GAI R+A     D
Sbjct: 59  RKNHQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFGAIARTAACAGVD 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++   + S   +    K+++GAL  I   R  +LT  ++ +   G Q +  +  +   +
Sbjct: 119 ALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQVVACTEKTGDTI 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +       A+++GAE  G+       A  +A + M G I +LNVS +A V +Y      
Sbjct: 179 YKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQR 238


>gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM]
          Length = 264

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 11/259 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLP 88
           +KM+      +  +  +  F++G+  V  A+       K+F     + ++          
Sbjct: 5   QKMKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAK 64

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHV 141
           H      VP + +++       HQG+    + +   +++           +  L++LD +
Sbjct: 65  HKIRPNYVPIEKLNRFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N GAI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  
Sbjct: 123 TDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDF 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G      +  ++K +         AL++G E KG+  +    +     L + G  +
Sbjct: 183 LQQSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQ 242

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS A    LY      
Sbjct: 243 SLNVSVACGAILYEVVRQR 261


>gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 257

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V  AL      + +++  K                +    +      I ++VG
Sbjct: 9   LIYGVHPVLEALRREGNAVEEVIVVKGRRAPWFEEVKALAQKYGVRFRLADQTWIKRLVG 68

Query: 107 KEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                       G      P +   L     + LL+V D + DP N+G +LR+A A    
Sbjct: 69  PVNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAVGAQ 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  K  +   ++V+ K+A+GA+ H+P  R++NLT A+      G   IG  + + + L
Sbjct: 129 GVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATASQTL 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
                   +AL++G EG+GLRP+ ++    +  + M G  + +LN + A AV +Y     
Sbjct: 189 YGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMYEIYRQ 248

Query: 280 FA 281
            A
Sbjct: 249 RA 250


>gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 242

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 183 KWNTK-GKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNR 241


>gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           cenocepacia MC0-3]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 9/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102
            + + ++G+H V A L N   ++ +L  +K       R   +         + VP Q ++
Sbjct: 2   SQKVTVFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALE 61

Query: 103 KIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K        G  A  Q     T   L   L+  + + L ++LD V DPHN+GA LR+A A
Sbjct: 62  KRAEGGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  S   +  + K ASGA E++P + ++NL  AL+ +   G    G + ++
Sbjct: 122 AGVTGVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + +        +AL++GAEGKG+R  T+ET   +  + + G + +LNVS A+ V L+  
Sbjct: 182 TQSVYDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEV 241

Query: 277 QNHFA 281
                
Sbjct: 242 VRQRN 246


>gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus
           denitrificans BC]
 gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans BC]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R            +       + K+ G
Sbjct: 6   ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     +LD + +          LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   SA +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGISATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTSGDADK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY    
Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALR 245

Query: 279 HF 280
             
Sbjct: 246 QR 247


>gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
 gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
          Length = 250

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102
           +    FLYG + V  AL +        +        L     + +     V  VP   ++
Sbjct: 3   EEGIDFLYGRNPVLEALRSGRDMNKVFIMEGQQKGPLAQIIAMANEASVQVSFVPKTKLE 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+ G E  HQG+    A     T++ +         + L ++LD + DPHN+G+ILR+A 
Sbjct: 63  KMAGSE-HHQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S   +  +AK+++GA+EHIP  R++NLT  L+++   G   +G  + 
Sbjct: 122 AVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDAK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +   +   N  + +++G+EGKG+    +E+   + HL M G + +LN S AAA+ LY 
Sbjct: 182 ESQDYRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLYE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VHRSR 246


>gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 264

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 108/245 (44%), Gaps = 11/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99
                +++YG + V   L    RK+++LL   +  A                 ++ V   
Sbjct: 16  KPSGRVYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERS 75

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154
            +D++    A HQG+ +E +     +++          + +++LD + DP N G +LR+A
Sbjct: 76  ILDRLT-HGANHQGVVIEASEFSYSSIEDLLASGELRGKDILMLDSLQDPQNFGTLLRTA 134

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LS 213
             F    +I  +  S   +  +  ++SGA EH+   +++NL     K+  +G+  +G   
Sbjct: 135 EVFGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEY 194

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +S   +        I L++G+EG G+R   ++    +  +   G I +LN + A ++AL
Sbjct: 195 DESSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIAL 254

Query: 274 YITQN 278
           Y    
Sbjct: 255 YEIYK 259


>gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2137]
          Length = 285

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           129PT]
 gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           2336]
 gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT]
 gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus
           2336]
          Length = 245

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L N   ++ ++   K    +      +        V+ +   T+DK    
Sbjct: 5   IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64

Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P      +        + + LL+VLD + DPHN+GA LRSA A     
Sbjct: 65  E-VHQGIIARVQPAKELNENDLVEILQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   +A+  K A GA E +P +R++NL   L+ +       +  ++       
Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIWVVGTAGEAIETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+      
Sbjct: 184 YEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQR 243


>gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
 gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
          Length = 269

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 16/252 (6%)

Query: 41  RHTSQPENLF---LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVK 94
              ++P+  +   ++G+  V  A+ +    I  L   +     L     +    +    +
Sbjct: 13  SFRNEPKREYNQMVFGIRAVIEAIRSGKE-IESLFIQRGLGGELFYELKNLLNEYKIESQ 71

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147
            VP + ++++      HQG+    +P+    ++ +           L+++LD V D  N+
Sbjct: 72  QVPVEKLNRVT--TKNHQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGVTDVRNV 129

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A       I+   + S   +    K+++GAL +IP  R S+L   ++ + S G 
Sbjct: 130 GAIARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKFLQSSGL 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           Q +  +  +   +         A+++G E  G+  +    A  +A + M G I++LNVS 
Sbjct: 190 QIVCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIESLNVSV 249

Query: 268 AAAVALYITQNH 279
           +  V LY     
Sbjct: 250 STGVILYEAIRQ 261


>gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710b]
          Length = 281

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 7/264 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDG 76

Query: 77  ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           ALA  +    +    P + V  P  +   +       GL L  A         V  + ++
Sbjct: 77  ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVV 136

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +  D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      + 
Sbjct: 137 L--DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++             S   + +        +A + G EG G+  + +E AT    + 
Sbjct: 195 GTLIE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIP 251

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
            PG +++LNV+ AAAV L+     
Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275


>gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184]
 gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184]
          Length = 260

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGLAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++ +++  D V 
Sbjct: 65  QAIVARIDAQRIVTLPNALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEALAERL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
 gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
          Length = 285

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 113/284 (39%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++ L  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A  +N   ++ ++L  K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNKSQG 64

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E     +A           D     + + + LL++LD V DPHN+GA LR+A A   D +
Sbjct: 65  EVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDAV 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I  K  S   +    K A GA E +P IR++NL   ++ +       I  ++   +  + 
Sbjct: 125 IVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 185 EAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
          Length = 286

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +             R  +  + LD V 
Sbjct: 82  AAKTVASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +   + L++G E  GL  +  + A ++A +   G   +
Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 262 LNLAVATAVMLFEARRHL 279


>gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
          Length = 285

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRSWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ]
 gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma
           phagocytophilum HZ]
          Length = 258

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 14/247 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQ 99
                  L++YG H   +AL NP+R   +LL T   + + D    L       ++ V   
Sbjct: 3   RIKDNRYLWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIA 62

Query: 100 TIDKIVGKEAVHQGLALET------------APLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            ID +VG +A+HQG+ L+                          +  ++VLD V D HN+
Sbjct: 63  KIDSLVGSKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNV 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+LR+A  F+ D ++ T+  SPSES  +AK++SGA++ +P + I NL   L+ +    +
Sbjct: 123 GAVLRTAACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNY 182

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G  +     L Q   +++  +ILGAEGKG+R  T++    +  + M   +++LNVSN
Sbjct: 183 WCYGFDASGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSN 242

Query: 268 AAAVALY 274
           AAA+A+Y
Sbjct: 243 AAAIAMY 249


>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDK 103
           E  ++ G H+V+ AL +  R I ++    NA   L              V  V  + +D+
Sbjct: 2   EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQG+  + AP     ++              L++LD + DPHN+G+ILR+A  
Sbjct: 61  MVPGI-QHQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSILRTADC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S + +  ++K+++GA+E++P  R++NL   + ++   G   +G    +
Sbjct: 120 TGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVGTDVTA 179

Query: 217 KKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA V +Y 
Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VLRGR 244


>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
 gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
          Length = 286

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 94/258 (36%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  +E     + +             R  +  + LD V 
Sbjct: 82  AAKTVASGGLVLEVSEKVIGSITRRENPQMVVGIFDQRWKPLKDIRPREGETWVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRK 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +   + L++G E  GL  +  + A ++A +   G   +
Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 262 LNLAVATAVMLFEARRHL 279


>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 314

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP--SRKIFQLLATK- 75
           A  R +H   K+     ++++   +   +   + G + V   L     +  ++  L    
Sbjct: 41  AHQRPHHPAGKRAAKAARQAQGRHKKTDDTEIVLGRNPVLECLRAGVPATALYVALGADS 100

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128
           +                +  VP   +D+I     +HQG+AL+  P      D        
Sbjct: 101 DERLTESVQIAADKGIAILEVPRHDLDRIAA-NGMHQGIALQVPPYNYAHPDDLLAEAKS 159

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA    P
Sbjct: 160 DAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTP 219

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R +NLT AL++    G Q +GL +D    ++Q      I +++G+EGKGL    +E  
Sbjct: 220 VARATNLTRALKQWADAGLQVVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENC 279

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++  + M G  ++LN S AA V L       
Sbjct: 280 DAVVSIPMAGPTESLNASVAAGVVLAEIARQR 311


>gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
 gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
          Length = 255

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 14/258 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPH 89
           MQ  N K +   +   + ++G+  V  A+      I  L   +     +           
Sbjct: 1   MQDRNFKRQEPRESNQM-IFGIRAVIEAIKAGKD-IESLFIQRGLTGGIYTELKTLLREF 58

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142
             P + VP + +++I      HQG+    +P+    ++ +           L+++LD++ 
Sbjct: 59  DIPSQQVPVEKLNRITA--KNHQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N GAI R+A       I+  KR +   +    K+++GAL  +P  R  +L   L+ +
Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +   + +       A+I+GAE  G+  +    +  +  + M G I++
Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS +A + LY      
Sbjct: 237 LNVSVSAGIILYEAVRQR 254


>gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
 gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
          Length = 262

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 109/262 (41%), Gaps = 7/262 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEMCV-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  + V  + +++  
Sbjct: 61  HDEAQAIVSRIDSQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPETVGQTCIVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAQTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++      T    +++    +    + ++A + G EG G+    ++  +    +  PG
Sbjct: 179 IERLAVPVVITDSHGAEAIYDCD---LSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            +++LNV+ AAAV ++      
Sbjct: 236 GMESLNVAAAAAVCMFEQCRQR 257


>gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251
           2'-o-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
 gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
          Length = 247

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L    + +  +        R   D           +  V  + +  + G
Sbjct: 6   LLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRGMAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A          L   LD +  + LL+VLD V DPHN+GA LR A       +
Sbjct: 66  TDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L  
Sbjct: 126 IAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY      
Sbjct: 186 IDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQR 243


>gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
 gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
          Length = 251

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 109/249 (43%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            +    +G+H V A L     ++ +L   +    +      ++   +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKYSPERVIELWVLQGRDDKRFMPILESAAEYGISVQHATRKVLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAIL 151
                   HQG+      +                     +  L++LD V DPHN+GA L
Sbjct: 62  DKSD-GGQHQGVIARVKAVKQLNDKDLAVLLDKIEVEKTETPFLLILDGVTDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G
Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGIWIVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++++ L +      +A+ +G+E KGLR  T+E+  S+  + M G + +LNVS A  V
Sbjct: 181 AAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGV 240

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 241 CLFEAVRQR 249


>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
 gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
          Length = 255

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 10/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   KK+    +KS+         + G          P+  +  +  ++  L       
Sbjct: 7   SNEQIKKLIQLKEKSKVRKTTGTFTVEGKKMFVEI---PAEDLVSVYVSETFLKENGELV 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                   + V  Q   KI         +     ++  +        +    ++VLD + 
Sbjct: 64  KEKK---YQIVSDQVFKKISDTVTPQGIVAVVKQKSYSIDYIIEKRNKEKSCIVVLDRLQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+  A    GII +K  +   +  + +S  G++  +P+  + +L  A+  +
Sbjct: 121 DPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVDTL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G  T       +            AL++G E +GL  +    A  +  + M G +++
Sbjct: 181 KDNGITTYAAHLKGELYNSGS-LTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKVES 239

Query: 263 LNVSNAAAVALYITQN 278
           LN + A A+ +Y    
Sbjct: 240 LNAAIATAILMYEAAR 255


>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 247

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    N        V T    T+ K
Sbjct: 2   EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G +     +AL          D        +    L++LD + DPHN+GAI+RSA AF
Sbjct: 61  LAGSQNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   +++
Sbjct: 121 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNAE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  E+   +  +A ++G EGKG+     +    +  + M G I +LN S AA++ +Y   
Sbjct: 181 KSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 240

Query: 278 NHFA 281
           +   
Sbjct: 241 SKRK 244


>gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 251

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 12/245 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIV 105
             +YG+H V A L     ++ ++   K+   R               V+    Q +D  V
Sbjct: 3   EMIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQV 62

Query: 106 GKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             E     +A           D         A +   LL++LD V DPHN+GA LRSA A
Sbjct: 63  NHEVHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSADA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K +S   +A + K ASGA E +P I ++NL   L+ +       +G + D+
Sbjct: 123 AGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAGDA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ L Q      +AL++G+EG+G+R  T+E    +  + + G + +LNVS A  V L+  
Sbjct: 183 EQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLFEV 242

Query: 277 QNHFA 281
                
Sbjct: 243 TRQRN 247


>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 255

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 15/269 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H           K  +    K +   Q     L G H V+ A+        
Sbjct: 2   EKINSLQNAH----------VKAWKKLQTK-KGRKQQGQYLLDGWHLVNEAVKAHVAIQT 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L+  K    +L  + +L H   V  +  +    I          AL T P     L  +
Sbjct: 51  LLITAK----QLATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQL 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+  
Sbjct: 107 DLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQL 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I         Q             +                LI+G EG G+  +      
Sbjct: 167 ISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTD 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ + G  ++LNV+ AA V ++    
Sbjct: 227 QNLYIPIKGQAESLNVAVAAGVLMFGLYR 255


>gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
 gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++ +++  
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFVLSIHEDVAP--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                          S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 257

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 15/269 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H           K  +    K +   Q     L G H V+ A+        
Sbjct: 4   EKINSLQNAH----------VKAWKKLQTK-KGRKQQGQYLLDGWHLVNEAVKAHVAIQT 52

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L+  K    +L  + +L H   V  +  +    I          AL T P     L  +
Sbjct: 53  LLITAK----QLATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQL 108

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+  
Sbjct: 109 DLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQL 168

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I         Q             +                LI+G EG G+  +      
Sbjct: 169 ISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTD 228

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ + G  ++LNV+ AA V ++    
Sbjct: 229 QNLYIPIKGQAESLNVAVAAGVLMFGLYR 257


>gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU
           1054]
 gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
           50-1 BON]
          Length = 249

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            ++  + G + V  AL +  R I  +     +  +               V+ +    +D
Sbjct: 5   KDSDIIEGRNPVIEALKSG-RLIKIIYIAAGSRGKTVDCIKSLAQSRGISVQEIERVQLD 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K       HQG+    AP     ++              +++LD + DPHN+GAI+R+A 
Sbjct: 64  KRSA-TGAHQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAE 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  K  S   +A + K+++GA+E+I    ++N+   ++++   G      +  
Sbjct: 123 CMGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWI-MGADM 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +P         I LI+G EG G+R   +E    +  + M G I +LN S AA + +Y 
Sbjct: 182 RGRPCRSMDLKGPIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMYE 241

Query: 276 TQNHF 280
                
Sbjct: 242 ISMQR 246


>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGK 107
            +YG + V  A+ +    I ++  +K A   +             V T    T+ ++   
Sbjct: 6   IIYGRNPVIEAIRSGKE-IEKIYVSKTAGGNISKIIGMAKEAGIVVSTADSDTLKRLAQT 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 +A+          D        +    L++LD + DPHN+GAI+RSA AF   G
Sbjct: 65  PNHQGVVAVGALYKYFDVTDILNYAEEKKEKPFLLILDEITDPHNMGAIIRSAEAFGVHG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   +A + K+++GA+E+I   ++SN+   ++ +   G   IG  + ++K  E
Sbjct: 125 VIIPKRRSAGINATVVKASAGAVEYIKVAKVSNINSTIRDLKEKGLWIIGTDAKAEKSFE 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++G+EGKG+     E    +  + M G I +LN S AA++ +Y   +  
Sbjct: 185 ELDYDFPLALVIGSEGKGISRLVLENCDFVIKIPMKGKINSLNASVAASILMYNILSKR 243


>gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
 gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
          Length = 318

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 101/264 (38%), Positives = 142/264 (53%), Gaps = 9/264 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           R  R  +  +     S    +          +L+G H V+AALNNP R   +LL T+   
Sbjct: 40  RQPRHGRSARRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENH 99

Query: 79  ARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135
             L+          V  + V  Q +D ++G +AVHQG+AL    L    LD        +
Sbjct: 100 PALEEATRSGRNVRVTPELVQRQRLDDLLGPDAVHQGVALLARILPPMPLDEALERPGPV 159

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE +P +R  NL
Sbjct: 160 LVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNL 219

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           + A++++   G  T+GL +             ++AL+LGAEGKGLR  T+E+   +A L+
Sbjct: 220 SRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLY 279

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LNVS AAAV LY     
Sbjct: 280 MPGEMESLNVSVAAAVGLYELMRR 303


>gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 281

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72
           +++  K +    +K++  ++       G      A   P   + Q+              
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62

Query: 73  ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                ++   +   +          +    + V       +   +     L +   P  +
Sbjct: 63  MQDCMESCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                      L++L+ + DP N+G ++R+       G+I  +      +    +S  G+
Sbjct: 123 LEEMLKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P+    +L   +  +                  ++     K A ++G EG GL  +
Sbjct: 183 IYRVPFFVTKDLPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKKKTAFLIGNEGNGLSDE 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A +   + M G +++LN + +A++ +Y T    
Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 252

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 9/239 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 187 QDLTGPT-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 244


>gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63]
          Length = 252

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 13/246 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTI 101
           + +   + G + VS A+ +  R I ++L  K   +               PVK V    +
Sbjct: 10  EQKPDVIAGRNPVSEAVRSN-RPIDKILVAKGEKSGAIVGILAKARDKKIPVKEVDRTKL 68

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154
           D + G  A HQG+    A     T+D +            ++VLD V DPHN+GAI+R+A
Sbjct: 69  DYVSG-GATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNLGAIIRTA 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 GII  KR S   S  +AK+++GA+E+   +                   +  + 
Sbjct: 128 ECAGVHGIIIPKRRSAGLSYTVAKASAGAIEY-MRVARVTNIAVTLDELKEKGVWVYGAD 186

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++   +   A+++G EGKG+    +E    +A L M G I +LN S AA + +Y
Sbjct: 187 MDGTDYDECDFSGACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASVAAGILMY 246

Query: 275 ITQNHF 280
               + 
Sbjct: 247 KAMKNR 252


>gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG   V  +L+    KI++    K  + L              +  V  +  DKI   +
Sbjct: 4   IYGRKPVLDSLDTDI-KIYKAYIQKQNSKLVDTIIKKLEEKNIEISFVDKRFFDKI---D 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ LE       T+D V+++  L++LD + DPHN+GAI+RSA +F  DG+I  +R 
Sbjct: 60  MNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAIIRSAESFGFDGVIIPERR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S ++ + K+++GA+ +I  IR++NLT  ++ +   GF   GL+ ++   + +     K
Sbjct: 120 SASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIYGLAGEADSDISKADLKGK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L++G EG+G+    +E    + ++ M G + +LN S AA +++Y     
Sbjct: 180 VTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230


>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
 gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 9/261 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           +     ++   K+++   +K++   +       G   +   L+ P+  + QL   ++   
Sbjct: 2   HRIESPHNEGLKEIRELTKKAKKRWEKGMFVAEGERLL---LDLPASSLLQLYVQEDYKG 58

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L           +  +  + ++ I   E            LL           L ++L+
Sbjct: 59  ALPRGIEK-EDSRICILSKKAMESISTTEH-----GQGILGLLRFPKKEKPKGDLFLILE 112

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G + R+A A   + I  ++      S  + +S  G+L  +P+    +L    
Sbjct: 113 NIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEEDLFFLC 172

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           + + S G Q   L  D KK   Q       A + G EG GL  +  + AT    + M G 
Sbjct: 173 ESLKSAGVQVFALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLLIPMEGK 232

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I++LNV+ +A++ LY      
Sbjct: 233 IESLNVATSASIVLYEAVRQR 253


>gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC
           17616]
 gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC
           17616]
 gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++ +++  
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAP--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                          S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 176 DALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 317

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 15/277 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            +      + H+  K  Q     +         N  + G + V   L+        L   
Sbjct: 38  KAEDRVYHQAHKRKKAAQRRASGAHDRRDAFGGNELVVGRNPVVECLHAN-VPASALYVA 96

Query: 75  KN--ALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128
           +      RL    ++       V  V  Q +D++ G   +HQG+ L+  P     +    
Sbjct: 97  EGTGNDDRLSEAVHICSSRGISVLEVSRQELDRMTG-NGLHQGIGLQIPPYKYADVHDLI 155

Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G 
Sbjct: 156 ERAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGT 215

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P  + +N+  AL++    G+Q +GL +  +  L+         +++G+EGKGL   
Sbjct: 216 AARLPVAKATNMVRALKQFQQNGYQVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLSRL 275

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ETA ++  + M   +++LN S AA V L       
Sbjct: 276 VGETADTILSIPMADKVESLNASVAAGVVLSEFARQR 312


>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 253

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+ +  N K +   +     L G+H V  AL    +    L+ +K        + 
Sbjct: 7   SNSRVKEWKKLNTK-KGRKKQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +P    V  +  +    I   +   QG+    +          ++    ++LD V DP 
Sbjct: 63  EIPDETKVIMISKEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I  +            
Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   ++  +      ++   AL++G EG G+  +  E  +   ++ +    ++LNV
Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEILEMTSINLYIPIT-NAESLNV 240

Query: 266 SNAAAVALYITQN 278
           + AA + ++  + 
Sbjct: 241 AVAAGILMFALKK 253


>gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
 gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L     + P    V  S +++  D V 
Sbjct: 65  QAIVARVDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPVQPLPARVTQSSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAGALAERL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 266

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 95/263 (36%), Gaps = 7/263 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALA 79
            R++   K ++   +  +   Q    ++ G+  V +A        F +    L       
Sbjct: 6   SRDNTKIKILRKL-RSRKFREQSGLCYVEGIRQVYSAFEEGFHFEFLIVSSDLLRSEHAW 64

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +L  D  + +   V  V       I  ++       +      S      R    L+ L 
Sbjct: 65  KLVNDL-ISNGVQVIDVDQNIFKSISLRDNPQGIAGVVRQKWHSLESIDPREGLCLLALK 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP NIG+ILR+A A     +I              ++ +GA   +  I+ S     L
Sbjct: 124 AVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTVKLIKTSFE-RLL 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              +      IG    +     +        L++G+E +GL  + Q +   +  + M G 
Sbjct: 183 DWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLDLREQSSCDMLVSVPMVGK 242

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           + +LN++ A +V LY   +  ++
Sbjct: 243 VDSLNLAVATSVILYEIFDQRSR 265


>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 297

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 39  KSRHTSQPEN----LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPF 91
           KSR  +  +      ++ G + V   L      +  L+A+  +A  R+     L      
Sbjct: 39  KSRARAVKQAADAPEWVLGRNPVFECLRAKVPAVELLVASGIDADERVAESVRLAGNAGV 98

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDP 144
           PV  V    +D+     A HQG+ L+  P             +      L++ LDH++DP
Sbjct: 99  PVTEVARFELDRRSS-GAPHQGIGLKVKPYEYRHPADLLVEAEDSGRPALMVALDHISDP 157

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RSA AF   G++   R S S +A+  ++++GA   +P  +  NLT  L++   
Sbjct: 158 RNLGAVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQD 217

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +GL ++    L+  +  + +AL++G+EGKGL    +E+   +  + M G +++LN
Sbjct: 218 RGLLLVGLDAEGDTSLDDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLN 277

Query: 265 VSNAAAVALYITQNHF 280
           VS A  V L       
Sbjct: 278 VSVATGVVLGEIARQR 293


>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X514]
 gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X513]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    N        V T    T+ +
Sbjct: 2   EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+   +A      +D         +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAG-SRNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K  E+   +  +A ++G EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239

Query: 277 QNHFA 281
            +   
Sbjct: 240 VSKRK 244


>gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
          Length = 235

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 131/227 (57%), Positives = 165/227 (72%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           LYG+HTV AAL+NP RKI ++L T+NA  RL+ +      F  + V P+ IDKI G +AV
Sbjct: 3   LYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSDAV 62

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+ +E  PL    LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+SP
Sbjct: 63  HQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSP 122

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ES VLAKSASGALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D+IA
Sbjct: 123 QESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRIA 182

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY  +
Sbjct: 183 LVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229


>gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 271

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 93/265 (35%), Gaps = 9/265 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLL----AT 74
            +++   K++       R+  +     + G+     AL     N    +I  +       
Sbjct: 5   SKDNPKIKQLSKLYSNRRYRRETGLFVIEGIRGCVDALVDDTLNGGMMEIEGIYYLEEIF 64

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           ++                   +     DKI   ++      +        T D ++    
Sbjct: 65  EDICDEYKPMLMSLDERKRFIITKDIADKISDTDSCQGIFVVAKMLDKPFTEDKLKKGGK 124

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD + DP N+G ++R++ A   DGI+ T       +    +SA G++  +      +
Sbjct: 125 YLVLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEKD 184

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               ++        T     +    + Q   +   A+++G EG+GL     E  +    +
Sbjct: 185 FERVIEAFRLKDIPTAAAVINGGTEIRQYDFSKGCAVVIGNEGRGLMHDHAEMCSHKVTI 244

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I +LN + AA + L+     
Sbjct: 245 AMHGHIDSLNAATAATIFLWEMTRQ 269


>gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     S   ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEG 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
 gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
          Length = 323

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 22/289 (7%)

Query: 11  KIFSLKDSHYAKLRRNHR-------DYK---KMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           K     DS  A   ++HR       D +     +   +      +     + G   V+ A
Sbjct: 30  KRKKRADSREACGTKDHRSGGYRPRDIRTSDDTRGARKSRTSRQKSAFDLIEGRRAVAEA 89

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLA 115
           L      +   L   ++  R      L         PV+ VP Q +D +    A HQG+ 
Sbjct: 90  LALNI-PLKNALVQVSSGERDQEIETLAKQLSSDGVPVERVPRQVLDALSSHGA-HQGVI 147

Query: 116 LETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           + T P     L  +         L++VLDHV D  N GAI+RSA      G++     + 
Sbjct: 148 VRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAA 207

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
                  K+++GA+ H+P  R+SN++ AL+++ + GF T G +  +   +       ++A
Sbjct: 208 QVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAAGFWTCGATEHAADDVWSAPLGGRLA 267

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L++G+EG G+     ET      L   G I++LNV+ A  V  Y     
Sbjct: 268 LVMGSEGAGISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRR 316


>gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
 gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
          Length = 248

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YG + V   L +    I ++    N    +L           +       ++K+    
Sbjct: 9   IVYGRNAVLELLQHKPESIEKIYFQFNTSHPKLKEIVITARRLKL-VSGKARLEKLSEIA 67

Query: 109 AV--HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+    + +   +L+        ++ LL+VL  ++DPHN+GAI+R+A A + D 
Sbjct: 68  GTTKHQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAADA 127

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +      +A + K+A+GAL H+   ++ +L   L+ +H    Q      D+++   
Sbjct: 128 VVVVEGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERNYT 187

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   AL+LG EG GL P+  +   ++  L M G +++LNVS  A V LY      
Sbjct: 188 DVDMRQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQR 246


>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 113/248 (45%), Positives = 161/248 (64%), Gaps = 1/248 (0%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +R  K       + R ++    + LYG H+V+ AL NP+R+I +L  T+NA  RL  + N
Sbjct: 51  NRPGKSAGRPAWRDRDSASDGPVILYGWHSVTMALQNPARRIRKLTLTENAARRLAEE-N 109

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           +      + V PQ ID+++  +AVHQGL  E  PL SP ++ +    +++VLD + DPHN
Sbjct: 110 IETRVTPEIVRPQEIDRLLSPDAVHQGLLAEADPLPSPDIETLTPEGMVLVLDQITDPHN 169

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA AF+   I+TT R+SP  + VLAK+ASGALE +P + + NL  AL  ++  G
Sbjct: 170 VGAILRSAAAFAVKAIVTTARHSPEATGVLAKAASGALELVPVVTVQNLARALTALNERG 229

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           FQT+GL S+  + L      + +AL+LGAEGKGLR  T+ET + +A L MPG IK+LNVS
Sbjct: 230 FQTVGLDSEGSEDLSNVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVS 289

Query: 267 NAAAVALY 274
           NAAA++LY
Sbjct: 290 NAAALSLY 297


>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 273

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 26/284 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+  ++E++  +   H                   +++     +  F  G   V  AL 
Sbjct: 1   MITSVRNEQVKHIVSLH-------------------QTKGRKTSQQFFAEGRRFVGEALM 41

Query: 63  NPSRKIFQLLATKN---ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLAL 116
              R                    +  L       P + V    + +I   E     LAL
Sbjct: 42  RSKRIEKIFYCPAKGSTWEREKLEELILEAGKLRIPAEEVSEDVMKRISATEEPQGILAL 101

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                 S     +    +L++LD + DP N+G ILR+++A     ++ T+      +  +
Sbjct: 102 INQEEYSWDDIQIEPDTILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNPKV 161

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGA 235
            +S+ GA+  +  ++     D            +  + + +    Q++     +AL++G+
Sbjct: 162 LRSSMGAVFSMCILQEIERPDIWAFCRQNHLNLVVSALEGQSVYRQKMDQSLPLALVIGS 221

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E  G+ P+  E +     + M   +++LN + AA + L+  +  
Sbjct: 222 EANGVAPEFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQ 265


>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
 gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           MJ-1236]
 gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291]
 gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 265

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 107/262 (40%), Gaps = 7/262 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79
            +++   K  ++   KS++ ++     + G   V  AL          I +    K    
Sbjct: 7   SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +L  D +      +     +   ++V  E     + + +      +    +  + +++LD
Sbjct: 66  KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A +   D II  K      +  + +S  G++     I  ++  + +
Sbjct: 125 RIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-DMNIIDASQDETV 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + S  F  +    +++   ++     K+AL++G E  G+  +    +  +  + + G 
Sbjct: 184 DMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN + ++A+ +Y  + +  
Sbjct: 244 AESLNAAISSAILMYEIKKYLI 265


>gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC
           19707]
 gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 274

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 17/268 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             ++ +  +                   YG+H V AAL  P+ ++  L   +  + R   
Sbjct: 3   RKRRFERLHPSPGLEKAEGDGLSSCELRYGLHAVRAALEQPALQVMALWLDQARIDRSLQ 62

Query: 84  DANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQ 133
                        + V  + +D +V   A HQG+    +   +         L+ +    
Sbjct: 63  KLAKLAFQRGLKAQLVKREELDDLV-PGARHQGVVARCSVQPALTEEGLLTFLENLEAPP 121

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD V DPHN+GA LR+A A    G++T K  +   +AV  K ASGA E IP +R++
Sbjct: 122 LLLLLDGVQDPHNLGACLRTAEAAGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVT 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL   ++ +   G   +G           +      + L+LGAE +GLR  TQE    + 
Sbjct: 182 NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLV 241

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G + +LNVS AA V L+  Q   
Sbjct: 242 QIPMQGAVGSLNVSVAAGVCLFEAQRQR 269


>gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
 gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
          Length = 260

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 101/261 (38%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++ +++  
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSPPLPARVAHTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAPEAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 179 AARLDVPV---ALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 248

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++       +        +   V     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P            L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244


>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
 gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614]
          Length = 275

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 4/270 (1%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I   + +       ++   K+++    + +H SQ       G+   + AL       +  
Sbjct: 2   IEKRQGAVKQITSHSNPIVKEIKGLVAQRKHRSQSGLFVAEGLKLATDALEAGWGIRYLA 61

Query: 72  LATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L      N +A+    A       +  V    +  +  K+     + +    LL P    
Sbjct: 62  LGPDARDNPVAQKAAAAAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQQLLGPRDIE 121

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + L + LD V DP N+G I+R+  A    G++     +   +    ++  G+L H+P
Sbjct: 122 PSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSLFHVP 181

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             ++    +      +W                     + + L++G E KGL        
Sbjct: 182 LAKLGKD-EFKSLAATWPGTVAATHLKGSVDYRTPDYAEPVLLVMGNEQKGLEDDMAAAC 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++  +   G   +LN++ A  VALY  + 
Sbjct: 241 PTLIRIPQVGQADSLNLAVATGVALYEIRR 270


>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 266

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S  +K ++          G+  ++ A         ++L        L  + 
Sbjct: 9   SNPLVKRVRSLREK-KYRKAEGLFLAEGLRILTEAREEGVLP--EMLFHAGTAHPLGLEL 65

Query: 86  N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V    P  + KI GK+     + +    L         ++ + +V   + 
Sbjct: 66  IDDIEAAGGDVIVTTPDILSKISGKDNAQALVGVYRDRLTPLAALDRSSADIWIVAQSLR 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+  A    G+I         S    +++ GAL      +     + L  +
Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQARWE-EFLPWL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                Q IG S  + +  ++        L++G E +GL    +     +  + M G   +
Sbjct: 185 RGGAGQLIGTSLKATQDYQEPAYQSPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADS 244

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + A AV  Y   N   K
Sbjct: 245 LNAAVATAVMAYELLNQRRK 264


>gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
 gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
          Length = 256

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       I K+VG
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRIAKLVG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A       + TLD + +          LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEEVKDTRTLDELLDDLEDEGVKAPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L+++   G   IG S D+ +
Sbjct: 126 VHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDADR 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q       AL+LGAEG G+R  T++T  ++  + M G +++LNVS A+ V LY    
Sbjct: 186 HLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALR 245

Query: 279 HF 280
             
Sbjct: 246 QR 247


>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 9   NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW-AIRTLVYAKAAKGKPLVEQM 66

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +            +   +  + LD V 
Sbjct: 67  AAKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWRPLKGIRLSEGETWVALDRVR 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +       + 
Sbjct: 127 DPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLARATPEEFIAWRK 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +   + L++G E  GL  +    A ++A +   G   +
Sbjct: 187 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAREADALARIPQQGRADS 246

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 247 LNLAVATAVMLFEARRHL 264


>gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 258

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 11/257 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP 90
           M+      +  +  +  F++G+  V  A+       K+F     + ++          H 
Sbjct: 1   MKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAKHK 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVND 143
                VP + +++       HQG+    + +   +++           +  L++LD + D
Sbjct: 61  IRPNYVPIEKLNRFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N GAI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  + 
Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G      +  ++K +         AL++G E KG+  +    +     L + G  ++L
Sbjct: 179 QSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238

Query: 264 NVSNAAAVALYITQNHF 280
           NVS A    LY      
Sbjct: 239 NVSVACGAILYEVVRQR 255


>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTI 101
              +  + G H V  AL NP RK+ ++  T+     + R +   N+     V     + +
Sbjct: 2   NKSSFLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKEL 61

Query: 102 DKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           DK   K+ +  G  +                 +N    + +D V DP NIG+++RSA +F
Sbjct: 62  DKYTSKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSF 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  +R  PS+S ++ K+ASG +EHI    +SN+   L+ +    F   G  +  +
Sbjct: 122 HIDGLIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K   +     K  L+ G+EG G+R  T +       + +   +++LN+SN+AA+  +  
Sbjct: 182 KDFTEIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFHHL 240


>gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
 gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
          Length = 249

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + +++
Sbjct: 4   KSEIIFGVRAVIEAVEAGKE-IDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    + +           L     +   ++LD V D  N GAI R+   
Sbjct: 63  VT--RKNHQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++   + S S +A   K+++GAL  +P  R  +L   ++ +   GF+ +  +   
Sbjct: 121 GGVDAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q      I LI+G+E KG+  +          + + G I++LNVS AA V +Y  
Sbjct: 181 DYNYTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 276

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSA----ALNNP-SRKIFQLLATKNALARLD--WDANLPHPF 91
           ++    +     + G ++V+     AL+N  +R +  L  T++A  R     D  L    
Sbjct: 19  RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V  V  + I  +         +A+     +  +    + ++LL V   VN+P N G ++
Sbjct: 79  RVALVTDRAIKALSDTVTPPGLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVI 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A   D  I         +  + +S++G+L H+P +R  +    ++++ + G Q + 
Sbjct: 139 RIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILA 198

Query: 212 LSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            ++D +  L++     +   A + G E  GL P     A     + + G  ++LN++ AA
Sbjct: 199 TAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAA 258

Query: 270 AVALYITQN 278
           A+ LY +  
Sbjct: 259 AICLYASAR 267


>gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
 gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
          Length = 305

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G + V  A  +  R + +L      K  + +            +  VP + ++++  +
Sbjct: 68  LEGRNAVLEAFRSG-RSVDKLYLQADLKEGMIQTIAREARKAGTVINYVPKERLNQMS-E 125

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A      ++ +            L +LD + DPHN+GAI+R+A      
Sbjct: 126 TGSHQGVIAVVASFDYAEVEDIFQKAKDKGEAPFLFLLDGIEDPHNLGAIIRTANLAGAH 185

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I T+  +   +A +AK+++GA+ + P  +++NL   + ++   G   +   +     +
Sbjct: 186 GVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDELKKKGMWFVCA-AMDGTRM 244

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 245 YDLDLKGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304


>gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM]
 gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 257

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 26/281 (9%)

Query: 1   MN-LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M  +I   +++KI                  K +      +R   +     + GV     
Sbjct: 1   MKTIIESLQNDKI------------------KHLNRLATDNRFRKKQGVFIVEGVQENQR 42

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL   +  +   +          + A LP    +  +  +   KI  +      + +   
Sbjct: 43  ALTFGNEALEFYI------CESIFSAELPTNAKIYYITDKIYQKIAYRGTTEGIIGVYKT 96

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P           +  +++++ +  P N+GAILRS  AF  D +I T       +  + +S
Sbjct: 97  PQNHLDHFIPSENASVIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + G L  +   +  N +                 S+  + + Q+    K ALI G E  G
Sbjct: 157 SVGCLFGMNIFQADNQSTLAFLKKHHFKVYTTFMSEDAQLIHQKDFKTKTALIFGTEHSG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    +  A     + M G I +LN+SNA AV+ Y      
Sbjct: 217 ISDFWKGKA-ENILVPMAGTIDSLNLSNAVAVSCYEILRQR 256


>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
           SP1PR4]
          Length = 263

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
              LYG+H V  A+ +  R +  +      K+A      ++       + + P   ID++
Sbjct: 1   MELLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E     +A           D           +  + LD V DPHN+GA+LR+A    
Sbjct: 61  AKTEMHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGI+  +R S   +AV+AK+++GA EH+   +++NL  AL++M       IGL      
Sbjct: 121 VDGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTP 180

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        L+LG+EG GL    ++T   +  + M G + +LNVS A AV +Y   
Sbjct: 181 DYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMYEVA 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa
           SC2]
 gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa
           SC2]
          Length = 248

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 115/245 (46%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDK 103
           E  ++ G H+V+ AL +  R I ++    NA   L              V  V  + +D+
Sbjct: 2   EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQG+  + AP     ++              L++LD + DPHN+G+ILR+A  
Sbjct: 61  MVPGI-QHQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSILRTADC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR S + +  ++K+++GA+E++P  R+SNL   + ++   G   +G    +
Sbjct: 120 TGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVGTDVTA 179

Query: 217 KKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA V +Y 
Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VLRGR 244


>gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 276

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 108/249 (43%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSA----ALNNP-SRKIFQLLATKNALARLD--WDANLPHPF 91
           ++    +     + G ++V+     AL+N  +R +  L  T++A  R     D  L    
Sbjct: 19  RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V  V  + I  +         +A+     +  +    + ++LL V   VN+P N G ++
Sbjct: 79  SVALVTDRAIKALSDTVTPPGLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVI 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A   D  I         +  + +S++G+L H+P +R  +    ++++ + G Q + 
Sbjct: 139 RIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILA 198

Query: 212 LSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            ++D +  L++     +   A + G E  GL P     A     + + G  ++LN++ AA
Sbjct: 199 TAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATAA 258

Query: 270 AVALYITQN 278
           A+ LY +  
Sbjct: 259 AICLYASAR 267


>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
 gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
          Length = 264

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 112/284 (39%), Gaps = 25/284 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+ K +EKI S K                      KS++ ++     + G   ++ A
Sbjct: 1   MVEITSKDNEKIKSTK-------------------LLLKSKNRNKESKFIIEGYRILTLA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
                  I  +   ++   + +    L         V     +    +V  E     LA+
Sbjct: 42  FEQ-KDIIDYVFINEDFENKEEHRKFLKELEDANIKVYKTTNKNFKDMVDTENTQGILAV 100

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            +    +   +   + + ++VLD + DP N+G I+R+A A   D IIT K      +  +
Sbjct: 101 VSYEKKTLEKNLTDDDKYIIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNPKV 160

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S  G++     I  +   + L  + S G + +    +++   +     +K+AL++G E
Sbjct: 161 IRSTMGSIF-SMNIIPAERDEMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIGNE 219

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             G+     E +  +  + + G  ++LN + ++A+ +Y  +   
Sbjct: 220 ANGIDDVIAENSDLLVKIPIYGSAESLNAAISSAILMYEIKKSL 263


>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 267

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+   ++KSR   +     + G   +  AL      +  LL      A      
Sbjct: 7   QNPLIKKIVLLSEKSRERKKEGICVVEGAREIRLALE-GGYTLETLLYQPEIFAEEHLLK 65

Query: 86  NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141
            L           +  +   KI  + +    +A ++T      TL  V +S LL+V +  
Sbjct: 66  LLSHTAQRVNPIAISKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFVTDSPLLLVAEAP 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D +I                +S        I   + T+ +  
Sbjct: 126 EKPGNIGALLRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGSTTEVIDF 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G  +   +  + KP  +    +  A+++G E +GL  +    +T    + M G+I 
Sbjct: 185 LKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGVID 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++NVS AAAV ++  +   
Sbjct: 245 SMNVSVAAAVLIFEAKRQR 263


>gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
 gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
          Length = 251

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 7/235 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEA 109
           G+H V+A L +   ++  L      L                 V+      +D+      
Sbjct: 15  GIHAVAAVLQHAPERVRLLQLASGTLEPALAQLLEQAQARGISVERAGRDKLDQHHPGFQ 74

Query: 110 VHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               +            +          L++VLD V DPHN+GA LR+A A     I+T 
Sbjct: 75  HQGVIVHCAPRPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIVTP 134

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           + +S + +    K ASGA E +P + + NL   L  +   G  T+GL   + + L     
Sbjct: 135 RHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAVDL 194

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A+++GAEG+G+R  T+E    +A + M G +++LNVS A  + L+  +   
Sbjct: 195 RPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249


>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 269

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+   ++KSR   +     + G   +  AL      +  LL   +  +    + 
Sbjct: 7   QNPLIKKIALLSEKSRERKKQGLCVVEGAREIRLALQ-GGYSLENLLYQPDIFSERQLNE 65

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141
            L           +  +  +KI  + +    +A +E       TL       LL+V +  
Sbjct: 66  LLSYTTQKLTPIAISKEVYEKISYRSSTEGVIALVEVKKHGLDTLAFSTKKPLLLVAEAP 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A   D +I                +S        I      + +  
Sbjct: 126 EKPGNIGALLRTADAAHIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGTTAEVIDF 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +    +   +  + KP  +   ++  A+++G E +GL  +    +T    + M G+I 
Sbjct: 185 LKAKNISSYCAALTASKPYYEVSFSEASAIVVGTEDQGLTDEWLTHSTQNIIIPMEGVID 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++NVS AAAV ++  +   
Sbjct: 245 SMNVSVAAAVLIFEAKRQR 263


>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 307

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70
             +  H  K R  +   K+ Q     ++   +  +  + G + V  AL +         Q
Sbjct: 29  EARKGHV-KNRLANAKAKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 86

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 87  QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 145

Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                   +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 146 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 205

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  + +    +  + +++G+EGKGL 
Sbjct: 206 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 265

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 266 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 306


>gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 262

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 23/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                  K +      +          L G H + A 
Sbjct: 1   MEHIASAQNSRI------------------KHLAKLAASAAKRRAFGQTLLEGTHLLEAF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN   R    +   +N L      + L    P           I+G+           A 
Sbjct: 43  LNAGGRP-ECVYVAENRL-EDAEISALLQRMP-SEKTVSVAAPILGRLTGLGEGGNIVAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +  P+ + +      +VL+ V DP NIG ILRSA A     I+     +   S  + ++A
Sbjct: 100 IKLPSAEKLPEDGDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLRAA 159

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA   +     ++L    Q              +    L      D    + G EG G+
Sbjct: 160 MGAHFLLTLYPDTDLAVWRQGYRPPLL--ATALDERACGLYGLDLRDPCGWLFGNEGAGI 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + +  A     + M G  ++LNV+ AA V L+      
Sbjct: 218 SAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQR 257


>gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel]
 gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel]
          Length = 262

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 13/255 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98
           R  +  E +++ G H   +AL NP+R   +LL T   L +    A +        + V  
Sbjct: 3   RTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVAA 62

Query: 99  QTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNI 147
           + I KI G     HQG+AL    L     D +R   ++          ++LD V D +N+
Sbjct: 63  EEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINNV 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA  F  D +I  + +SPSE+ ++ + +SGA + +P +R+ NL   ++ +   G+
Sbjct: 123 GAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNGY 182

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G+  D  K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSN
Sbjct: 183 WCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVSN 242

Query: 268 AAAVALYITQNHFAK 282
           AAA+ LY +     +
Sbjct: 243 AAAIVLYSSYLQLHR 257


>gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 246

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    + +           L     +   ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEG 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRT 245


>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 130/290 (44%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D      AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154

Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                               LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               K ++GA   +P  R++NL  AL++    G+  +GL      PL      +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324


>gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309B]
 gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309A]
          Length = 282

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 114/281 (40%), Gaps = 23/281 (8%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHT-------------SQPENLFLYGVHTVSAALNNPS-RK 67
           K  ++    K  +  +++S+                +  + F++G H    AL      K
Sbjct: 2   KNEKSRPFKKGKKRSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGRGNK 61

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +F     +         A      PVK VP   +D +     VHQG+ L        TL+
Sbjct: 62  LFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYLTLE 120

Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + K++
Sbjct: 121 ELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKAS 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG+G+
Sbjct: 181 TGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEGRGM 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +    +  + M G +++LN   AA + +Y       
Sbjct: 240 SQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 280


>gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
 gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           MSMEG_6073
 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 314

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 14/273 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           A +R NH   KK ++  +  +        E   + G + V   L    P+  ++  L T 
Sbjct: 41  AHMRPNHPAAKKARAAAKAQQQRAGRKADETELVLGRNPVLECLRAKVPATALYVALGTD 100

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128
            +                +  VP   +D++     +HQGL L+  P      D       
Sbjct: 101 ADERVTESVQIAADRGISILEVPRTDLDRMSNH-GLHQGLGLQVPPYAYAHPDDLLATAR 159

Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 LL+ LD+++DP N+GAI+RS  AF+  G++  +R S S +AV  ++++GA   +
Sbjct: 160 ADAAPALLVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARV 219

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R +NL   L+     G Q +GL +     L++        +++G+EGKGL    +E 
Sbjct: 220 PVARATNLNRTLKSFADAGLQIVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREH 279

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  + M G  ++LN S AA V L       
Sbjct: 280 CDAIVSIPMAGPTESLNASVAAGVVLAEIARQR 312


>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
 gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
 gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 14/266 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDW 83
           H  +K+     ++ +   Q  +   + G + V   L+        L   + A    RL  
Sbjct: 46  HAAHKRKLERQRREKGRHQREQTELVVGRNPVLECLHA-RVPSTALYVAEGAANDERLSE 104

Query: 84  DANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQL 134
              L      PV  V    +D++ G   +HQG+ L   P     +              +
Sbjct: 105 SVRLAADRSIPVLEVNKLELDRMTG-NGMHQGIGLAIPPFEYADIHDLLADAAQSPKPGM 163

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD++ DP N+GA++RS  AF  +G+I  +R S S +AV  ++++G    +P  + +N
Sbjct: 164 FVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETN 223

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +T  +++    G+Q +GL +     L+     D + +++G+EGKG+    +E   ++  +
Sbjct: 224 MTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSI 283

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
                +++LN S AA V L       
Sbjct: 284 PTEPWVESLNASVAAGVVLSEFARQR 309


>gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
 gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
          Length = 247

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
            L G+H V  AL+        L+       RL+   +L     ++   VP + + ++   
Sbjct: 3   VLAGIHAVKHALDAGDSIDELLIEKGKHHPRLNELIHLAKKHSIRFSFVPKEALARLAEG 62

Query: 108 EAVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 +A                     +  + ++++LD V DPHN+GA +R+A A  C
Sbjct: 63  VPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMVLLLDQVTDPHNLGACVRTAEAAGC 122

Query: 160 DGIITTKRYSPSESAVLAKSASG-ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             +I  K ++    + +   A+  AL  +P +R+ N+   ++++   GF T+GL+ +++ 
Sbjct: 123 AAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVINMKRCIEQLQQQGFWTVGLAGEAEL 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +     +   A+++G+E KG+R   +ET   + H+ MPG++++LNVS A  VAL+    
Sbjct: 183 SIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEINR 242

Query: 279 HF 280
             
Sbjct: 243 QR 244


>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           reducens MI-1]
          Length = 243

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  + G + V  AL    R I +++  K A              +  P++ V    +DK+
Sbjct: 2   NEMIAGRNPVREALRAG-RPINKVVMAKGAGTGPLAEIVKLAKQNNIPLQMVERSHLDKM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    A      L+              +++LD +NDPHN+GAI+R+A A 
Sbjct: 61  -NPGVPHQGVIAYAAAKQYVELEELLEIARAKGQDPFIIMLDEINDPHNLGAIMRTADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  +R S + ++ +AK+++GA+E++P  R++NL   ++++   G   +G   D  
Sbjct: 120 GAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVTNLDQTIRQLKDEGLWVVGADMDGS 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          + L++G EGKGL    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 180 EIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGRVGSLNASVAAALLVYEVV 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 246

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 11/237 (4%)

Query: 53  GVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G + V  A  +     K+F L   ++   +            +  V  + +D++ G    
Sbjct: 10  GRNAVLEAFRSGKTIDKLFILDGCQDGPIKSIVREAKKTDAIINYVDKERLDRLAG-TGH 68

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      +D +            + +LD + DPHN+GAI+R+A      G+I
Sbjct: 69  HQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPHNLGAIIRTANLAGAHGVI 128

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A +AK+++GA+ + P  +++N++  ++++   G   +       + +   
Sbjct: 129 IPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQGLWFVCA-DMGGETMYNL 187

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                I L++G EG G+    ++    +A + M G I +LN S AA V  Y      
Sbjct: 188 NLKGPIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
 gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
          Length = 265

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +    F+ G H V  A
Sbjct: 12  MKNIDSVQNPRVKQWKKLQTK-------------------KERDKKGLFFVEGFHLVEEA 52

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+ +       DW  N      +  VP   +  +   E      A+    
Sbjct: 53  LKTG--IVTELIVSDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +     ++LD + DP N+G I+R+A A     ++  +      ++ + +S 
Sbjct: 108 EKEVALTDGK----FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRST 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P ++ +      +   +          ++  P  +       ALI+G EG G+
Sbjct: 164 QGSIFHLPIVKGNLEEWVDKLKENDVPVYGTA-LENGVPYGEVTPAGSFALIVGNEGNGV 222

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 223 RQEILAKTNQNLYIPIYGGAESLNVAVAAGILTYYLQ 259


>gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu]
          Length = 260

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTSHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALRHDEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P    V  + +++  D V 
Sbjct: 65  QAIVARIDAHRLVTLPDALFGQLSNVVNGVGFLLLVDRPSHPLPARVTGTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +               
Sbjct: 123 DAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDIEA---GALA 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G       S   + +        +  + G EG G+    ++ AT    +  PG +++
Sbjct: 180 ERIGVPVALTDSHGAQAIYDCDLAGPVVWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 313

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 14/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI---FQ 70
            ++  H  K R  +   K+            +  +  + G + V  AL      +    Q
Sbjct: 36  EMRKGH-KKNRIANAKSKQAVRRPAPRGRGGKGTSEMVVGRNPVVEALREGVPAVTLYVQ 94

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVREALQLVAERGGVHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHAEDL 153

Query: 130 RNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +        L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 AAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  +   E     +A+++G+EGKGL 
Sbjct: 214 TAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY      A
Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 313


>gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 247

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +   +   +    A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTRLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
 gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
          Length = 272

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 112/255 (43%), Positives = 156/255 (61%), Gaps = 1/255 (0%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           ++ + ++R   + +      R+   +     LYG HTV+ AL NP RKI +L  T+NAL 
Sbjct: 8   SRFKGSNRTPPRGRGGPPHRRNREDRDGPAILYGWHTVTLALANPKRKIRKLFVTENALR 67

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           RL  +         + V P  ID+ +G +AVHQGL  E  PL +  +  +    +++VLD
Sbjct: 68  RLQDENIDLKKLTPEVVRPSVIDQRLGPDAVHQGLLAEADPLPALDISELPQDGIVLVLD 127

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAILRSA AF+   ++TT R+SP  + VLAKSASGALE +P + + NL  AL
Sbjct: 128 QITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPVVIVQNLARAL 187

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +M   GF T+GL S+    L +      +AL+LGAEGKGLR  T+ET  ++A L MPG 
Sbjct: 188 TEMKEHGFLTVGLDSEGSTNLAETELRAPLALVLGAEGKGLRQLTRETCGTVARLDMPGE 247

Query: 260 IKALNVSNAAAVALY 274
           IK+LNVSNA A+ALY
Sbjct: 248 IKSLNVSNATALALY 262


>gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
 gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
          Length = 274

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 6/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALAR 80
            R+H   K++    + S++  +     L G+H +    + L  P   I       +   +
Sbjct: 6   SRDHPLIKRLIKLEESSQYRKRTGLTLLDGIHLIQIHCSILGKPENLIVSESYFADTDNK 65

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              D    +  P  T+   ++ + +       G+    +          R   L ++L+ 
Sbjct: 66  HFMDIIFGYKPPKITIVGDSLFRAISPVKTPTGILALISKPALQGNTHTRKEVLSVLLET 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A +   I  +K  + + S    ++A GA   +     SNL    Q
Sbjct: 126 IQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFLHIYENSNLKQIAQ 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +       T   ++ +             A + G EG GL  +  + A     + MPG  
Sbjct: 186 QFPGTVIATSIQATKNLFE---ISLAGPTAFLFGNEGAGLSAEMIQAAHLNIAITMPGKT 242

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ AAA+  +     
Sbjct: 243 ESLNVAAAAAICFFEKVRQ 261


>gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815]
 gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815]
          Length = 266

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 8/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK+++     +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKVLAGSTHQQRKSGHALLEGFHLASAYLDVAGQPETCV-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L  P  + V +  +++  
Sbjct: 61  HDEAQAIVARIDERRIVTLPDALFGQLSNVVNGVGMLLLVEKLDLPLPERVTHGCVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQIHEDIEA--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +           S   + + +   +  +A + G EG G+    ++  T    +  PG
Sbjct: 176 PTLIQLLDVPVAITDSHGAEAIYETDLSGPVAWVFGNEGAGVSQPWRDAVTYRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI-TQNHFAK 282
            +++LNV+ AAAV L+   +    K
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQQRGK 260


>gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           frigidimarina NCIMB 400]
          Length = 246

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++G+H V A L+N   ++ +L   +     RL    NL       ++    + +D   G 
Sbjct: 7   IFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLDDKAG- 65

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + HQG+      +          L        L++LD V DPHN+GA LR+A A     
Sbjct: 66  SSQHQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADAAGVHA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   ++ ++K A GA E IP  +++NL   ++ +   G   +G + +++  + 
Sbjct: 126 VIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEAEGNVY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +A+ +GAE KGLR  ++E   S+  + M G + +LNVS A  V L+      
Sbjct: 186 QADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEAVRQR 244


>gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 261

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 3/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++     KSR   +     + GV  +  A+      I ++   +  ++  +   
Sbjct: 9   QNPAVKRLLQLQDKSRARKKEGGFIIEGVREIELAIAAGYE-ITEVYFNEAVISEDEVAG 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     + ++  +   K+  +      +A   A   +    A+  + LL++ +    P 
Sbjct: 68  MVNGTAMMTSLSTEVYQKVAYRAGTEGIIAFAKAETKTLQELALPENPLLLIAEAPEKPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR+A A   D +I                +S        I      + +  +   
Sbjct: 128 NIGALLRTADAAGVDAVII-ANPKTDLYNPNIIRSSVGCVFTTQIATGTTAEVISFLQEK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G                +      A+++G E  GL  + + T  +   + M G I ++NV
Sbjct: 187 GIAVYSAILQEAVDYAAQDYTTPTAIVVGTEATGLSQEWR-TVGTNIKIPMRGKIDSMNV 245

Query: 266 SNAAAVALYITQNHF 280
           S AA + ++  +   
Sbjct: 246 SVAAGILVFEARRQR 260


>gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus
           nasoniae]
          Length = 244

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 9/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L     ++ Q+   K    +  L     L      ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVRALLERDPLRLKQVYILKGREDKRLLPIIHQLEKLGIIIQLANRQWMDRQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    +A           D     +   S  L++LD + DPHN+GA LRSA A   
Sbjct: 62  TENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEAAGI 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I  K  S   +A   K A GA E    +          +        +G + ++   
Sbjct: 122 DAVIVPKDKSAQLNATAKKVACGAAE-SVPLIRVTNLARTLRQLQQHIWIVGTAGEANHT 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      IAL++GAEG+G+R  T+E    +  + M G++ +LNVS A  V L+     
Sbjct: 181 LYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVRQ 240

Query: 280 F 280
            
Sbjct: 241 R 241


>gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
 gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    R+I  +   K                    VK    + +D + G 
Sbjct: 13  IVGRNAVIEALKAG-REIDTIFVAKGERAGSIGQIVSLAKERGIVVKDADSRKLDAMSGG 71

Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +     A+  A   +   +          +  +++ D + DPHN+GA++R+A      G
Sbjct: 72  ASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPHNLGALIRTAECAGAHG 131

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  KR S S + +++K+++GA+ ++P  R+SNL   + ++   G   +  +    +   
Sbjct: 132 ILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKERGIW-VYGADMDGENWC 190

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++G+EG+GL    +     +  L M G + +LN S A  + +Y      
Sbjct: 191 ATDFSGGVALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQR 249


>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
           73102]
          Length = 363

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 25/279 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTVSAALNNPSRKIFQLL 72
            +       + +  SR  +             + +N  +YG H V +AL    R + ++ 
Sbjct: 71  RNPRKIDSNTISGNSRQRNSNFSQSPVSTQPIEEDNDIIYGRHPVLSALQ-KQRNLNRIW 129

Query: 73  A----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-- 126
                  +            +   +  V P+ +D +    A HQG+A +TAP     L  
Sbjct: 130 ITTRLRYDPSFHHFLLQAKENGTVIDEVEPKRLDYLT-NGANHQGVAAQTAPYGYIELAD 188

Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      +++V D + DPHN+GAI+R+A A    G++  +R +   ++ + K A+G
Sbjct: 189 LIEQSKSVTDPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAG 248

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALE+    R+ NL+ AL+++   GF   G ++   +P+        I L++G+EG+GL  
Sbjct: 249 ALENFTVSRVVNLSRALEELKEAGFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGM 308

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            TQ +   +  + + G   +LN S AA +ALY      +
Sbjct: 309 LTQRSCDFLVSIPLQGKTPSLNASVAAGMALYEIYRQRS 347


>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
          Length = 244

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +L+G++ V  AL    RK+  L        RL+            VK    + +DK+VG 
Sbjct: 4   YLFGLNAVFEALGQG-RKVVALYVEAQRNPRLEEIVAQATERHVAVKQCERRQLDKMVGD 62

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+  +       +L      + ++ +  ++LD + DPHN GA++RSA A  C G+
Sbjct: 63  VR-HQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + ++ K+A+G L ++   +++NL  A++++   G    GL+ +  + L +
Sbjct: 122 IFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLFE 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +  IAL+ G+EG+G+RP  ++    +  + MPG +++LNVS A  +AL+    +  K
Sbjct: 182 APLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHLK 241


>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 314

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 15/281 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70
             +  H  K R  +   K+ Q     ++   +  +  + G + V  AL +         Q
Sbjct: 36  EARKGHV-KNRLANAKAKQTQR-RTAAKSRGKSSSELVVGRNPVFEALRDGVPATALYVQ 93

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 94  QFIDNDERVRDALKLAADRGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 152

Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                   +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 153 PAAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 212

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  + +    +  + +++G+EGKGL 
Sbjct: 213 TAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLS 272

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313


>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 286

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +H  +  +    G+  V  AL+   R I  L+  K A  +   +  
Sbjct: 24  NPIIKDIRALAQK-KHRDETRSFIAEGLKLVIDALDLGWR-IRTLVYAKAAKGKPQVEQV 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +             R  +  + LD V 
Sbjct: 82  AAKTVARGGLVLEVSEKVISAITRRDNPQMVIGIFEQRYQPLKDIHPREGETYVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GI+     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPLARANAEDFLRWQR 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + S      +  +  + L++G E  GL  +    A ++A +   G   +
Sbjct: 202 AAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLPVELAREAGALARIPQSGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A  + L+  + H 
Sbjct: 262 LNLAIATGIMLFEARRHL 279


>gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16]
 gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16]
          Length = 247

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L   ++ +  +        R   D           +  V  + +  + G
Sbjct: 6   LLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRGMAG 65

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A          L   LD +  + LL+VLD V DPHN+GA LR A       +
Sbjct: 66  TDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L  
Sbjct: 126 IAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY      
Sbjct: 186 IDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQR 243


>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 5/253 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K +++ + + +           G+  +  AL+        +         L   A 
Sbjct: 11  NQTIKDIRALHMR-KEREATRQFLAEGLKIIIDALDQGIAPQILIYGKDADHHPLLQRAI 69

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     V  V    ++KI  KE     LA+    +   +     + ++ + L+ V D
Sbjct: 70  DETLKARGQVLEVTRDILEKISRKENPQMVLAVFAQRIRRLSEIDPDSHEVWVALEQVRD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A +  G+I         S    ++  G++     I      + +    
Sbjct: 130 PGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIF-ALPIVKCTREEFIADRG 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            W    +G    +K             L++G E  GL P+  +T      + M G   +L
Sbjct: 189 RWTGSVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEIADTCDLHVKIPMRGRADSL 248

Query: 264 NVSNAAAVALYIT 276
           N+S A  + +Y  
Sbjct: 249 NLSVATGIMIYAA 261


>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 322

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 13/260 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANL 87
           ++MQ      R    PE +   G + V   L     +  ++  +  + +   +       
Sbjct: 64  RQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 121

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140
                +  VP   +D++     +HQG+AL+  P      D         +   LL+ LD+
Sbjct: 122 DAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDN 180

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+
Sbjct: 181 ITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLK 240

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              S G Q +GL +     L+       + +++G+EGKGL    +ET  S+  + M G +
Sbjct: 241 DWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEV 300

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN S AA V L       
Sbjct: 301 ESLNASVAAGVVLSEIARQR 320


>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 321

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 13/260 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANL 87
           ++MQ      R    PE +   G + V   L     +  ++  +  + +   +       
Sbjct: 63  RQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQRAA 120

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140
                +  VP   +D++     +HQG+AL+  P      D         +   LL+ LD+
Sbjct: 121 DAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDN 179

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+
Sbjct: 180 ITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLK 239

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              S G Q +GL +     L+       + +++G+EGKGL    +ET  S+  + M G +
Sbjct: 240 DWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEV 299

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN S AA V L       
Sbjct: 300 ESLNASVAAGVVLSEIARQR 319


>gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 242

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ AL      + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L         +    +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ S GF   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   K  KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 TVYNKWNTK-GKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
 gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans ATCC 17616]
 gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
          Length = 247

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            LS  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 265

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K      ++ +   +     + GV  V  A+  P    + L+A    +     
Sbjct: 4   SRRNALIKYASRLLER-KARDREGKFLVEGVRMVREAMKRPELVEYVLVACD--VTGEME 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +        V  + P+ + +I   E    G+       +        +  L++++D++ D
Sbjct: 61  EEFWRDAASVYRIRPELVKEITDTE-NPSGIVAVCRKPVWDWESIPESDGLILIVDNLRD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A A   D +   K      +  + +S+ GA+ H P        +  +  H
Sbjct: 120 PGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFPVFERVGNDEVRELCH 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +     +            +A+++G E  G+    +E   S   + +   + +L
Sbjct: 180 RGYRLVV-ADPKASLVFTDADYYGNVAVVIGGETAGISAVFEELPASRVRIPLREGVDSL 238

Query: 264 NVSNAAAVALYITQNHF 280
           N + A  + LY   +  
Sbjct: 239 NAAVACGIILYEAWSQR 255


>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
          Length = 265

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 107/262 (40%), Gaps = 7/262 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79
            +++   K  ++   KS++ ++     + G   V  AL          I +    K    
Sbjct: 7   SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +L  D +      +     +   ++V  E     + + +      +    +  + +++LD
Sbjct: 66  KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A +   D II  K      +  + +S  G++     I  ++  + +
Sbjct: 125 RIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-DVNIIDASQDETV 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + S  F  +    +++   ++     K+AL++G E  G+  +    +  +  + + G 
Sbjct: 184 DMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN + ++A+ +Y  + +  
Sbjct: 244 AESLNAAISSAILMYEIKKYLI 265


>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
          Length = 246

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            LYG + V  AL      ++      ++A AR   D        V+ +P   +D++VG  
Sbjct: 2   LLYGRNPVLEALPAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLVG-T 60

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  E   L   T+D +           L+++LD V DP N GAI+RSA      G
Sbjct: 61  TQHQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLGAHG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ + + 
Sbjct: 121 VVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQDVT 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + K AL++GAEG+G+R   +E    +  + + G +++LN S AA + LY       
Sbjct: 181 RTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLYEMTRSRG 240

Query: 282 K 282
           K
Sbjct: 241 K 241


>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
 gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
          Length = 278

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 21/275 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84
           ++   +++    +KSR   +       G+  V      P+  + ++  ++  LA    D 
Sbjct: 6   SNEHVRQVCQLQKKSRIRRKEGLFVAEGLRMVCE---TPAELVREIYVSERFLAEHGEDR 62

Query: 85  ----------ANLPHPFPVK-------TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
                     A        +        V    ++ +         LA+   P       
Sbjct: 63  GYRDFLDSLEAGRNQNRKTQGGQTGPLEVSDPVMEYMSDTVTPQGILAVVRQPAYQWEEL 122

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +  LLM+L+++ DP N+G I R+A      GI+ ++      S  + +S  G+L  +
Sbjct: 123 LGGHKTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRV 182

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++   +L+  L++    G         +K   +Q         ++G EG GLR  T   
Sbjct: 183 PWLITEDLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAAL 242

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A +   + M G +++LN + AA + +Y       +
Sbjct: 243 AEARIRIPMGGRLESLNAAMAAGILMYEAARQRRR 277


>gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 251

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K++     K+            H   V  V    +D +  + 
Sbjct: 6   VEGRNVVIEAFRSGKTVDKLYIRDGLKDYAISTILREAKKHGTYVNFVSKDRLDGMS-ET 64

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A     +++              + +LD + DPHN+GAI+R+A      G
Sbjct: 65  GNHQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAHG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A +A++++GA+ + P  +++N+   ++++   G   +       + + 
Sbjct: 125 VIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCA-DMGGEKMY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  I LI+G EG G+    ++    +A + M G I +LN S A  V  Y       
Sbjct: 184 NIDLTGSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRI 243


>gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7]
          Length = 247

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   +            +  V  + +D++    
Sbjct: 8   IEGRNPVIEAYRSGKTIDKLFVLDGCQDGPVKTITREARKQHTIISYVSKERLDQLSETH 67

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A+  A   +   D             + +LD + DPHN+GAI+R+A      G+
Sbjct: 68  HHQGVIAIAAAYDYASVDDILAKAREKGEEPFIFLLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A +A++++GAL   P  +++NL  A+ ++   G   +       + + +
Sbjct: 128 IIPKHRAVGLTATVARTSAGALNFTPVAKVTNLGAAMDELKKEGLWFVCA-DMKGEVMYR 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +     I L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 187 QNLTGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 261

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 98/258 (37%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++  YK +   +  +R   +     L G H + A L+N  +    LL  +        
Sbjct: 9   SRDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQDAEIV 68

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +     P          ++  +     GL        +    A     LL+  + + 
Sbjct: 69  ALLDACVDVPQTQFEDALFAQLS-ELKTPNGLLALIDIPAAQVEVAHSQFALLL--EDIQ 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G+ILRSA A  CD +  +   + + S  + ++  G       + I    D L+  
Sbjct: 126 DPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGGHF---ALSILESADLLKVA 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             +  + +  S  ++K L       K+A  +G EG GL P+    A     + M G I++
Sbjct: 183 TGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFIIPMQGKIES 242

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + A AV L+      
Sbjct: 243 LNAAAATAVCLFEASRQR 260


>gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica
           PV-4]
 gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica
           PV-4]
          Length = 246

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 8/237 (3%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V A L N   ++ ++   +     RL     +       V+    + +D   G  
Sbjct: 8   FGIHAVEALLKNSPERVIEMWVLQGRDDQRLMPLIAMAAEYGVSVQQASRKALDDKAGSS 67

Query: 109 AVH-----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                      A +        L     +  L++LD V DPHN+GA LR+A A    G+I
Sbjct: 68  QHQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADAAGVHGVI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + +++  L + 
Sbjct: 128 VPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEAEHDLYKA 187

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                IA+ +GAE KGLR  T+E+  S+A + M G + +LNVS A  + L+      
Sbjct: 188 DLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 280

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 101/264 (38%), Positives = 143/264 (54%), Gaps = 9/264 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           R  R  + ++     S    +          +L+G H V+AALNNP R   +LL T+   
Sbjct: 2   RQPRHGRPVRRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENH 61

Query: 79  ARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135
             L+          V  + V  Q +D ++G +AVHQG+AL    L    LD        +
Sbjct: 62  PALEEATRSGRGVRVAPELVQRQRLDDLLGPDAVHQGVALLARVLPPMPLDEALERPGPV 121

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE +P +R  NL
Sbjct: 122 LVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNL 181

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           + A++++   G  T+GL +             ++AL+LGAEGKGLR  T+E+   +A L+
Sbjct: 182 SRAIEQLQKSGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLY 241

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LNVS AAAV LY     
Sbjct: 242 MPGEMESLNVSVAAAVGLYELVRR 265


>gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
 gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
          Length = 258

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 89/252 (35%), Positives = 142/252 (56%), Gaps = 7/252 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+         
Sbjct: 5   KWVVQKEQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIARA-GI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148
             + V P+     +   +VHQG  LE  PL    L  V     +  +++LD V DPHN+G
Sbjct: 64  EPEVVDPRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       ++  + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+ 
Sbjct: 124 AILRSAEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYL 183

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++   +E      ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNV
Sbjct: 184 VLGLDGEADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNV 243

Query: 266 SNAAAVALYITQ 277
           SNAAA+ALY ++
Sbjct: 244 SNAAAIALYASR 255


>gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu]
          Length = 247

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           RP62A]
 gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 246

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I   +   + ++    D        V  +  +  + + G     QG       
Sbjct: 42  YQSQIEVIQLFIVDPDRMSSSIVDYAK----EVYQINLKVAEALSG-TVTPQGFFAIIKK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A +    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PTYDKTQAKQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I         Q         +  +        Q       AL+LG EG+G+
Sbjct: 153 QGSIFHIPVIFDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANF----ALVLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P   +  T    + + G  ++LNV+ A ++ +Y  +
Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245


>gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 234

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108
           +YG   V   L+    KI++    K     ++            +  V  +  DKI   +
Sbjct: 4   IYGRKPVLDTLDTDI-KIYKAYILKQNSKLVNKIIGKLEEKNIEISFVDKRFFDKI---D 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ +E        LD + + + L++LD + DPHN+GAI+RSA +F  DG++  +R 
Sbjct: 60  INHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAIIRSAESFGFDGVVIPERR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S ++ + K+++GA+ +I   R+ NLT +++ +   GF   GL+ ++   +++     K
Sbjct: 120 SASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIYGLAGEADSSIDKADLTGK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L++G EG G+    ++    + ++ M G + +LN S AA +++Y     
Sbjct: 180 VGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230


>gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 260

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 28/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I  K +  I  +                      ++ ++  Q     + G   V  A
Sbjct: 1   MDIIKSKDNAHIKEV-------------------KKLKEKKYRVQEGKFLIEGFRFVREA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L +   KI  +  + +   + +      +    FPV  +       +V  E         
Sbjct: 42  LYSD-FKISSIFLSSDFTDKWEKLLLKENFQCDFPVYFMEKGVFKAMVNTENPQG----I 96

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            A + +  L A       ++ D + DP N+G I+RSA A    G+I TK      +    
Sbjct: 97  AAVVENRELKASNKEGFYILADKIQDPGNMGTIIRSAHASGALGVIITKGTVDIYNEKTL 156

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++ H+P I   +L        S          D+           K+ + +G EG
Sbjct: 157 RSTMGSIFHVPVIYDEDLKKVELLRKSGFKLIGSS-LDTDISFYSANLKGKVIIAVGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL    Q+ +     + MPG  ++LNVS AA++ ++     
Sbjct: 216 NGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVRQ 257


>gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 9/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDAN 86
             K+ +    ++    +     + G   V  AL +    + ++ A  +     R   D  
Sbjct: 13  RIKQARRLATRA-FRRKTGRFLVEGPQAVREALEH-RDSVIEVFAEPDVATRHRDLRDLA 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                P   V    ++ +         +A+ +   +       R + L+ V   V DP N
Sbjct: 71  AAAGVPWYEVDRAGVEALSETVTSQGVVAVCSLVDVPLDEAVRRTASLVAVGVQVRDPGN 130

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ++R+A A   D ++ +       +    +++ G+L H+P     ++  A +     G
Sbjct: 131 AGTLIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAAAKSWRDQG 190

Query: 207 FQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            Q        S D  + ++          + G E  GL             + + G  ++
Sbjct: 191 VQVLAADGYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAES 250

Query: 263 LNVSNAAAVALYITQN-HF 280
           LN++ AAAV LY +     
Sbjct: 251 LNLATAAAVCLYASARAQR 269


>gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 264

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 93/253 (36%), Gaps = 1/253 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + KK++   QK+R   +     + G   +  A+         +   + A+   +   
Sbjct: 8   QNPELKKLRLLFQKARERKKLALFVIEGKREIQKAIR-GGYSFESVFIHEEAIGDFESLL 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N        ++     +K+  +    + +A+        +   +  + +++V++    P 
Sbjct: 67  NSVDHVTKYSLEASLFEKLSIRSGSEKIIAIAQNKPHDLSQLKLNKNSIVLVIEAPEKPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+ R+A A   D +I     +   +    +S+ G +  +P    S++        + 
Sbjct: 127 NIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTAIASSIEVIAYLKENK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   +    P +Q       AL++G E  GL             + M   + +LN+
Sbjct: 187 ITIATAAINSKAVPYDQFEYTPPCALVMGTESTGLDQLWLNETNQNLMIPMADEVDSLNL 246

Query: 266 SNAAAVALYITQN 278
           S +A + +Y  Q 
Sbjct: 247 SVSAGILMYECQR 259


>gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
 gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
          Length = 271

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 110/266 (41%), Positives = 161/266 (60%), Gaps = 7/266 (2%)

Query: 18  SHYAKLRRN--HRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQL 71
           S   K  R      ++  + F  K             + LYG+HTV AA  N  RK  +L
Sbjct: 2   SDDKKPSRPAGKPGFRGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKL 61

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
            AT NAL RL  +  +    PV+++ P+ +D++V K+AVHQG+ LE  PL +   + ++ 
Sbjct: 62  FATDNALRRL-EERGVKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKG 120

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L++ LD V DPHN+GAILRSAVA   D ++TT+R++P E +VLAKSASGAL+ I ++R
Sbjct: 121 ARLVLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVR 180

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + N+   + +M   GF  I L SD    LE+   +DK  L+LG+EGKG+R   +E     
Sbjct: 181 VKNMARFIAEMKDEGFSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLT 240

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
           A L MPG I++LNVSNAA ++LY+ +
Sbjct: 241 ARLDMPGEIRSLNVSNAAVLSLYVAR 266


>gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
 gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
          Length = 316

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 17/272 (6%)

Query: 24  RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TK 75
           R  H  +K+ ++      + +    +    ++ G + V   L         L        
Sbjct: 44  RPYHPAHKRAKTAAKPAGRGAPRRKEDGPEYVLGRNPVLECLRAG-VPATALYVASNSEP 102

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128
           +                +  V    +D++     +HQG+AL+         D        
Sbjct: 103 DERVAEAVKIAGDAGIALLEVGKPELDRLST-NGLHQGVALQVPEYTYAHPDDLLAAAKA 161

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL+ LD++ DP N+GA++RS  AF   G++   R S S +AV  ++++GA   +P
Sbjct: 162 SGTPALLVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLP 221

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + +NLT  L+     G Q +GL +D    L+         +++G+EGKGL    +E+ 
Sbjct: 222 VAQATNLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVGSEGKGLSRLVRESC 281

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            S+  + M G +++LN S AA V L       
Sbjct: 282 DSILSIPMAGDVESLNASVAAGVVLAEFARQR 313


>gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 257

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 102/253 (40%), Positives = 147/253 (58%), Gaps = 7/253 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ + +   E ++L+G+H V  AL NP+R+  QL+ T NA A+L          
Sbjct: 5   KWVVRKEQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAGAIEAA-GI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148
             + V P+     +   +VHQG ALE  PL   +L+ V        +++LD V DPHN+G
Sbjct: 64  TPEVVDPRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL+D ++ +   G+ 
Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYI 183

Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++   LEQ I   ++  +AL+LGAEG GLR KT+ET  S+  +   G   +LNV
Sbjct: 184 VLGLDGEASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243

Query: 266 SNAAAVALYITQN 278
           SNAAA+ALY TQ 
Sbjct: 244 SNAAAIALYATQR 256


>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM
           519]
 gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii]
          Length = 261

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 3/249 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++  YK   S  Q S++  + +     G+  V  A+ NP   I+ +   ++ +    +  
Sbjct: 8   DNPKYKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENPKT-IYLIFIQEDRINEPRYSN 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            + +      V P  + + +      QG+           +D +  +  +++LD + DP 
Sbjct: 66  IIKNTGDKSFVVPSKLMETISDTVTSQGIVAICNFESFM-IDDIDFNNDILILDKIQDPG 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A A     +I TK  +   S+ + +SA G+L H+  + I +         + 
Sbjct: 125 NLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDYESLNILKKND 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    ++           K+A++LG E  G+  K    +     + + G  ++LNV
Sbjct: 185 YKIISSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLNV 244

Query: 266 SNAAAVALY 274
             A  + +Y
Sbjct: 245 GIAGGILMY 253


>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 257

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K  +    K +   Q     L G H V+ A+   ++ + QL+ T + LA      
Sbjct: 8   HNQHVKNWKKLQTK-KFRRQSGEYLLDGWHLVNEAVKAGNQ-LRQLIGTADQLAAHQDLV 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V P+ +  +          A+   P        ++ + LL+  D V DP 
Sbjct: 66  ARAA--EAYVVTPEIMQHVTDTVTPQGIAAVVDLPDAHRVPANIQGAWLLL--DRVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A    G++   R +      + +S  G+  H+  +               
Sbjct: 122 NVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTLLEGDLHKWIQDFKQLG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   + + K           ALI+G EG+G+     +  T+  ++ M G  ++LNV
Sbjct: 182 APVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKETTANLYIPMRGDAESLNV 241

Query: 266 SNAAAVALYITQN 278
           + +A + ++    
Sbjct: 242 AVSAGILMFQLNR 254


>gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum
           STM815]
          Length = 247

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L +    + ++   +   +                +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDPSSVEEIYYDQTRRDRRMNEFLAVAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +A       A  L+  LD ++   LL+VLD + DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++   L +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      A
Sbjct: 186 TKLDGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 307

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 11/279 (3%)

Query: 12  IFSLKDSHYAKL-----RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           I  +K++H+  +        + + K +++ +++ ++  Q       G    + A+     
Sbjct: 29  IALMKNNHHVTIPAPITSTANAEVKFLRALHER-KYRRQSGWFLAEGTRICNEAVALGWD 87

Query: 67  KIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                           R   DA          +  + + +I  K+     L         
Sbjct: 88  MHRLAFLAGRDNETHVRKLLDALDRADGRALPMSEKLLQRISRKDNPQMLLGAFRQKWTD 147

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   S+  + LD V DP N+G I+RSA A    GII     +   S    +++ GA
Sbjct: 148 LDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA 207

Query: 184 LEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           + ++  ++ +        Q+  +   Q IG +  +         +  + +++G E  GL 
Sbjct: 208 IFNVEIVQCNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALMILMGNEQAGLP 267

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           P   +  T +  L M G   +LN++ A  V LY    + 
Sbjct: 268 PSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306


>gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
 gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
          Length = 260

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 142/249 (57%), Gaps = 9/249 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L  D         +  
Sbjct: 10  KERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIG-ASGMEPEMS 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE   L    L+ V       +  +++LD V DPHN+GA+L
Sbjct: 69  DPRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++   R++  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +G
Sbjct: 129 RSAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLG 188

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L  +++  +       ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNA
Sbjct: 189 LDGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNA 248

Query: 269 AAVALYITQ 277
           AAVALY ++
Sbjct: 249 AAVALYASR 257


>gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 250

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H+  A L +    + ++       +A  R            V  V P  ++ +  
Sbjct: 7   LIFGFHSTLAKLRHDPGAVREIYVDASRHDARLRDLVAHAEFAAVRVMPVDPARLEALA- 65

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   LD +     L+VLD + DPHN+GA LR A A     
Sbjct: 66  PGARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +    K ASGA E +PYI ++NL  AL++M       IG  + +K  L 
Sbjct: 126 VIAPKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +   A +LGAEG GLR  T+ET   +  + M G + +LNVS A  V LY  +    
Sbjct: 186 AAQWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRRN 245


>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
 gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
          Length = 248

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  KSE I  LK                        +   +     + G H V  A
Sbjct: 1   MTKITSTKSETIKRLKRLMTK-------------------KGRQETGQFLVEGEHLVDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +     ++ QL+  ++   +  W        PV  +     D +   E      A+    
Sbjct: 42  IRAG--RLVQLIMAESYSPKGTWRL---EDMPVLELSDHVADLLSETEKTQGVFAVVKMT 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +       R  + ++VLD V DP N+G ++R+A A   D ++  K      +A + ++ 
Sbjct: 97  PVE------RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRAT 150

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+    +  L    +             S +    +     +K+AL++G E +G+
Sbjct: 151 QGSLFHVNVTSVDLLEKLPELKEDGFHVYGTALSKATSYEQVA-FEEKVALVIGNEAQGV 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +  H+ + G +++LN + AA + +Y
Sbjct: 210 HADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243


>gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
 gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
          Length = 323

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 7/261 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWD 84
           R+       ++ +R  ++   + L G H V+A L      I Q+      ++   R   +
Sbjct: 49  RERSDRTERSRPARIRTEAGTVVLAGFHAVAARLKLDPESIQQVYVDPERRDKRMREMRE 108

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDH 140
                   V       +D +          A+      +      LD + +  LL++LD 
Sbjct: 109 KLFAAGVRVMNADAARLDGLSPDVPHQGIAAIAAERENTLDFADLLDQITDRTLLLILDG 168

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N GA LR+A A     +I  +  S   +   AK+A+GA E +P + ++NL  A+ 
Sbjct: 169 VTDPRNFGACLRAADAAGVQAVIVPRDRSARMTPAAAKAAAGAAETVPVVSVTNLASAIM 228

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G    G + ++   +    +    A +LGAEG+GLR  T+     +A + M G +
Sbjct: 229 ELRDNGVFVAGTAGETDTTIYDVAQARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGSV 288

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LNVS A+ + L+ +     
Sbjct: 289 ESLNVSVASGICLFESLRQRI 309


>gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii]
          Length = 245

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 7/240 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I  +    +   +      +        V  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKDIYVEASRRDKRMLAFLEQAERAGRRVHPVSAERLDGLAR 65

Query: 107 KEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +AL    LL+      LD +    LL+VLD V DPHN+GA LR+A A     +
Sbjct: 66  GTRHQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +  +   ++ + + A GA + +PYI ++NL   L+ +   G   +G    +   L  
Sbjct: 126 VAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLHT 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY +     +
Sbjct: 186 VDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQRRE 245


>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 251

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 109/279 (39%), Gaps = 28/279 (10%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+   +++I  ++        + +++ K             +     + G H V  AL+
Sbjct: 1   MITSASNKRIKDIQKL------KENKNIK-------------KYGRYLIEGKHLVEEALD 41

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
               K+ + +    +    +   +         V    +  I         +A+      
Sbjct: 42  A---KVVEEIIVSESFEEYNIVDSFEGDL--IKVTDSVLKSISDTITSQGIIAVCRIVKK 96

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              ++       +++LD + DP N+G I+R+A AF+ D II  K  +      + +S  G
Sbjct: 97  ELDINNYSK---VLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQG 153

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +  HI      +L + + +MH +      L +D        I   K+A++ G EG G+  
Sbjct: 154 SNFHIDCFDNIDLVELIDEMHEFNIFATSLKADKYIEQLDNI-TGKVAVVFGNEGAGVSE 212

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      ++  + MPG  ++LNVS AA + ++    +  
Sbjct: 213 EILSKVNNLLKISMPGRAESLNVSIAAGIVMHYISTNLK 251


>gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 261

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 12/259 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--P 90
           M+  + ++R  +      +YGVH V A            +    A ARL+    L     
Sbjct: 1   MKGKSSRTRVATPEGLDAVYGVHAVRALFERGQPPRELWIQEGRAEARLEALVALARQAG 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHV 141
                V  +T+D  V + AVHQG+     PL + + +            +  LL++LD V
Sbjct: 61  VKCAGVARETLDG-VARGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLILDGV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN GA LRSA A    G+I  K  +   +A + K A GA +  P  +++NL  A+ +
Sbjct: 120 TDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARAMGR 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G   +G + +S + L        +A+++GAEGKG+R  T++    +A L M G + 
Sbjct: 180 LKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAGSVS 239

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS A  V L+      
Sbjct: 240 SLNVSVATGVCLFEAVRQR 258


>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
 gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
          Length = 260

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++     +R   +     L G H ++A +         + A   +   +  
Sbjct: 8   SRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYIERFGMPKLLVTAEGESTNEVVG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +    P          ++    A   G+         P  +       L++L+ + D
Sbjct: 68  LLQVLADVPTVMFTTLMFAELS-PVATPTGILALVDIPQQPVPEQPD---FLLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A   + +  +   + + S    +   GA      I        L+ + 
Sbjct: 124 PGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQF----ILPIVERADLENVT 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    ++   + L +       A ++G EG GL     + A+    + M G +++L
Sbjct: 180 RGFAGQTLATTLMGESLYEMDLQPPTAFMIGNEGTGLSETLIKAASRQVSIPMAGQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           N + A A+ L+     
Sbjct: 240 NAAAATAICLFERSRQ 255


>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 286

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  +  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLIIDAIELGW-AIRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +            + + +  + LD V 
Sbjct: 82  AAKTVASGGLVLEVSEKVIASITRRDNPQMVVGIFEQRWTPLKGIRLSDGETWVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVARATPEEFIAWRK 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + +      + +   + L++G E  GL  +    A ++A +   G   +
Sbjct: 202 SAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAREADALARIPQQGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A AV L+  + H 
Sbjct: 262 LNLAVATAVMLFEARRHL 279


>gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 260

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 6/254 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80
            +++  +K  +S    +++ ++       G  T+  A+   +  I  +   +   N  ++
Sbjct: 5   SKDNDKFKLTKSLLT-TKYRNKEGKYIAEGQRTIELAIEYGA-SIEFVFVNERFYNDPSK 62

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A+L     V  +      ++V  E     LA+     +          + ++V+D 
Sbjct: 63  GVLIASLKESTHVYILDDSLFRQVVTTENSQGILAVINKKKMDSEDFNKNKHKKIVVVDR 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A   D II  K      +  + +SA G++ +   +   +  +A  
Sbjct: 123 VQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFY-MDMMSLDNEEARD 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +       +    D++   ++    +  AL++G E  G+       +  +  + M G  
Sbjct: 182 LLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKIPMFGKA 241

Query: 261 KALNVSNAAAVALY 274
           ++LNV+ ++A+ +Y
Sbjct: 242 ESLNVAVSSALLMY 255


>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
 gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
           JS614]
          Length = 314

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 18/278 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATK 75
            +      + H+  K+ +    +        +  ++ G ++V  AL      +  +   +
Sbjct: 39  KAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSVVEALRAG-VPVTGVYVAE 97

Query: 76  NA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128
            A      R  +         ++ V    +D++ G  AVHQGLA    P      D    
Sbjct: 98  GAERDGRLREAFATAAERRLNIQEVSRGELDRMTG-GAVHQGLAARIPPYEYAHPDDLLD 156

Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++ LD V DP N+GA++RSA  F   G++  +R S   +A   K+++GA 
Sbjct: 157 AAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAA 216

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
             +P  +  NL   L+     G   +GL++D    L      +  + +++G+EG GL   
Sbjct: 217 ARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278
             ET   +  + M   +++LN   AA+VALY     + 
Sbjct: 277 VSETCDQLVSIPMANQLESLNAGVAASVALYAISEARR 314


>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
          Length = 254

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ KI                          K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPKIK-------------------ELKKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K +  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 246

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 100/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I   +   + ++    D        V  +  +  + + G     QG       
Sbjct: 42  YQSQIEVIQLFIVDPDRMSSSIVDYAK----EVYQINLKVAEALSG-TVTPQGFFAIIKK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A +    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PTYDKTQAKQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I         Q         +  +        Q       AL+LG EG+G+
Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDVEAQANF----ALVLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P   +  T    + + G  ++LNV+ A ++ +Y  +
Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245


>gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 281

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72
           +++  K +    +K++  ++       G      A   P   + Q+              
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62

Query: 73  ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                ++   +   +          +    + V       +   +     L +   P  +
Sbjct: 63  MQDCMESCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                      L++L+ + DP N+G ++R+       G+I  +      +    +S  G+
Sbjct: 123 LEELIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P+    +L   +  +                  ++     K A ++G EG GL  +
Sbjct: 183 IYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDE 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A +   + M G +++LN + +A++ +Y T    
Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
 gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
          Length = 294

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 93/257 (36%), Gaps = 4/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++ +QK +   +       G+  V  A+       + + +             
Sbjct: 32  NPIVKDIKALSQK-KTRDETRTFLAEGLKLVIDAVELGWSLRYLIYSKAAKGKPQVERIA 90

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                H   V  V  + +  I  K+       +      +    ++   +  + LD V D
Sbjct: 91  ARTVAHGGMVLEVSEKVMASITRKDNPQMVAGVFDQRWKALKDVSLTEGETWVALDRVRD 150

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A    G++     +   +    ++  G++  +P ++ +       K  
Sbjct: 151 PGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVKTTVADFLGWKTK 210

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +         + +      + K   + +++G E  GL  +    A  +A +   G+  +L
Sbjct: 211 AGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARIPQAGLADSL 270

Query: 264 NVSNAAAVALYITQNHF 280
           N++ A  V L+  + H 
Sbjct: 271 NLAVATGVMLFEARRHL 287


>gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
 gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
          Length = 250

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101
           +   L + G + V  A  +  R I +L      ++   R        H   +  V  + +
Sbjct: 5   KESELMIEGRNAVLEAFRSG-RPIDKLFVLDGCQDGPVRTIVREAKKHDTVLNFVTKERL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++         +A   A   +   D             + +LD++ DPHN+GAI+R+A 
Sbjct: 64  SQMSETGRHQGVIAYGAAYEYAGVDDMLALAEERGEDPFIFLLDNIEDPHNLGAIIRTAN 123

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR +   +A +A++++GAL + P  +++NL   ++++   G   +     
Sbjct: 124 LAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DM 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + + +      I L++G EG+G+    +ET    A + M G I +LN S AA V  Y 
Sbjct: 183 DGESMYRLNLTGPIGLVIGNEGEGVGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAYE 242

Query: 276 TQNHFAK 282
                 +
Sbjct: 243 IVRQRIQ 249


>gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis Bt4]
 gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 262

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  AL+
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A       + V N+ +++  
Sbjct: 61  HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D  
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P                   LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 245

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L     ++ ++   K     RL       H     V+ +  QT+D     
Sbjct: 5   IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P      +            LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +       +  ++       
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 253

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 26/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K                        +H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+     +D  A  P    +  +     + +   E   QG+      
Sbjct: 42  LASGQTP-YDIYATEKY---VDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +    LL+  D + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 97  QAGQLPDLLSGQFLLL--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +    +        +         +D  K       + +  L++G EG G+
Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   +   +  ++ + G  ++LNV+ AAA+ ++  
Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
 gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
          Length = 251

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   +            +K V  + +D +   E
Sbjct: 12  VVGRNAVMEAYRSGKTIDKLFILDGCQDGPIKSILREARKRDTLIKFVSKEKLDSLSFHE 71

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A+  A   +   D  + +         ++ D + DPHN+GAI+R+A      G+
Sbjct: 72  KHQGVVAIAAAYEYATVEDLFKKAEEKGEAPFFILCDEIEDPHNLGAIIRTANLAGAHGV 131

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   ++ +AK ++GAL + P  R++NL+  + ++   G   +       + +  
Sbjct: 132 IIPKRRAVGLTSTVAKVSAGALNYTPVARVTNLSRTIDELKDKGMWFVCG-DMGGELMYD 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I LI+G EG G+    +E    +A + M G I +LN S A  V  +      
Sbjct: 191 LNLTGSIGLIIGNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGVLAFEIVRQR 248


>gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
          Length = 245

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ +++  K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             V  E     +A      +    D        +  LL+VLD + DPHN+GA LR+A   
Sbjct: 62  DKVNGEQHQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADGA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S S +  + K A GA E IP I+++NL   L+ +   G   +G + ++ 
Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGETD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L     +   AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY   
Sbjct: 182 KTLYDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU144]
 gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU028]
          Length = 255

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 8   EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D          +   +++LD + DPHN+G+ILR+A A 
Sbjct: 68  A--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPHNLGSILRTADAS 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++ 
Sbjct: 126 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 186 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 245

Query: 278 NHF 280
              
Sbjct: 246 RKR 248


>gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
          Length = 285

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 12/284 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E    F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPAIAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTMSDH-GVHQGMVLAITAYQYL 120

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+           +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYRRWNT-QGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+     +    +  + M G +++LN   AA + +Y       
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGRN 283


>gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
 gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
          Length = 246

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A        K+F L   ++   R        H   V  V  + +D+I    
Sbjct: 8   IEGRNAVLEAYRAGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNFVAKERLDQISETG 67

Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D             L++LD + DPHN+GAI+R+A      G+
Sbjct: 68  KHQGVIAYAAAYEYAEVEDLLKLAEEKGEPPFLILLDGIEDPHNLGAIIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +A +AK+++GAL + P  +++NLT  ++ +   G   +       + + +
Sbjct: 128 IIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCA-DMGGELMYR 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 187 LNLKGPIGLVIGNEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 246

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 105/278 (37%), Gaps = 32/278 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I   +++KI  +   H                     +   + +   + G H V  A
Sbjct: 1   MEIIESIQNQKIKQIAKLH-------------------NRKDRKKMQQFIIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +N+       L    + L     +A +        +  +  +K+   EA     A+    
Sbjct: 42  VNSNIDIEMILTVNPDRLT----EAMVAGSKQQYEITFKVAEKLSQTEAPQGIYAVCNMK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                         ++ LD + DP N+G I+R+A A   D +I  K      +  + +++
Sbjct: 98  DGKDAE-----LNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I +       +    +     G S +  +  ++ I +D   ++LG EG+G+
Sbjct: 153 QGSVFHIPVIEMDFD----EVSSKFNGTIYGTSLEEARDYKEVIPSDNFMIVLGNEGQGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+         ++ + G  ++LNV+  A + +Y    
Sbjct: 209 NPEILSATDENLYIPIYGRAESLNVAVCAGILMYHFVK 246


>gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
 gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
          Length = 261

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L +  +K+ + L  + A              P + V  + +DK    + 
Sbjct: 23  WIYGKNAVMQILKS-KKKVEKALVAEGAKFPEAETLLKNRRIPTQRVSRKELDKCC-MDT 80

Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+AL      + +++ +           +++LD + DPHN+GA+LR+  A   DG+I
Sbjct: 81  HHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVI 140

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S S ++ +AK ++GA+E +P   ++NLT  L+++   G+   G    + +   Q 
Sbjct: 141 LRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYRQP 200

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQN 278
             +  +AL++G+EGKG+    +E    M  L M G I +LN S A AV LY    + 
Sbjct: 201 AFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLYQIHAKR 257


>gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 15/277 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            +        HR  K+ +       +RH        + G + V   L+        L   
Sbjct: 39  KAEDRTYHPAHRRKKEAERRASGAHNRHERADAVELVVGRNPVVECLHAN-VPATALYVA 97

Query: 75  KNALARLDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
           +                     V  V  Q +D++ G   +HQG+ L+  P     ++   
Sbjct: 98  EGTKNDERLSEAVHTCADRGISVLEVSRQELDRMTG-NGMHQGIGLQIPPYKYTEVEDLI 156

Query: 128 ----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     +++ LD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G 
Sbjct: 157 ESTANAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGT 216

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P  + +N+   L++    G+Q +GL +     L+       + +++G+EGKGL   
Sbjct: 217 AARLPVAKATNMVRTLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ET  ++  + M   +++LN S AA V L       
Sbjct: 277 VSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQR 313


>gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus
           EPS]
 gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           EPS]
          Length = 248

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V   +    + + ++L     ++A  +            +       I K+ G
Sbjct: 6   VIFGFHAVGVRIKTAPKSVLEVLFDASRRDARMKQFIARAQEAGVRLVEADSLRIAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
                   A         +LD +           LL+VLD V DPHN+GA LR A     
Sbjct: 66  SHGHQGVAARVEPTAQIHSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K ++   +A +AK ASGA E +PY  ++NL   + ++       +G S D+   
Sbjct: 126 HAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTMNELKERSIWCVGTSDDAPGT 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY     
Sbjct: 186 IYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1]
          Length = 259

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K  Q  +   +   Q     L G+     AL + S  +  L+ T+NA ++   
Sbjct: 7   SKDNPTVKLYQKLSSSKKERLQYGLFVLEGLRITEDALRDGS--VSHLILTENAYSKTAD 64

Query: 84  DANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +          V  +  +  ++I   ++     A+   P             +++    +
Sbjct: 65  ELLQADLRDTKVLVISNELGNRIASTDSTQGVFAICRIPSGRTPAFCDDGRYVVLYG--L 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   +G+I +         V+  +          +           
Sbjct: 123 QDPGNVGMIIRTADALGINGVILSGSCDLYSPKVIRSTMGSVFRMAVSVINDTDALFALL 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +  +       + +     + A+ +G EG GL        T    + M G I 
Sbjct: 183 EENGVESSAAVIDKDAVKVTECSFTGRQAVFIGNEGNGLPADVAHRCTRRVTIPMSGNIN 242

Query: 262 ALNVSNAAAVALYITQN 278
           +LN + AA + ++  + 
Sbjct: 243 SLNAAMAAGILMWELKK 259


>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 247

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 7/239 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTI 101
              + F+ G H V  AL NP+RK+ ++  T++A   + + +   N+     V     + +
Sbjct: 2   NKSSFFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKEL 61

Query: 102 DKIVGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           DK   KE  +H G   E   L  P L      +     + LD V DP NIG+++RSA +F
Sbjct: 62  DKYTSKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASF 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  +R+ PS+S ++ KSASG +EH+   ++SN+   L+ +    F   G  +  +
Sbjct: 122 KIDGLIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K         K  L+ G+EG G++  T + A     + +   I++LN+SN+AA+  +  
Sbjct: 182 KNFTDVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFHHL 240


>gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 245

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 10/241 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIV 105
             ++G+H V A +     ++ +L   K     RL   A L        +    + +D   
Sbjct: 4   EMVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVRPQLAARKVLDDKA 63

Query: 106 GKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +   HQG+     P           L    ++  L+VLD V DPHN+GA LRSA A   
Sbjct: 64  -ESTQHQGVVARCKPEPVKGEHELDQLLDGVDTPFLLVLDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  S S   ++ K A GA E IP  +++NL   L+ +   G   +G + ++   
Sbjct: 123 HGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEATHT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + Q      +A+ +GAEGKGLR  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 183 VYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAVRQ 242

Query: 280 F 280
            
Sbjct: 243 R 243


>gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 103/242 (42%), Positives = 138/242 (57%), Gaps = 4/242 (1%)

Query: 41  RHTSQ---PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           R  ++       +LYG H V AAL+NP R + QLL T  A A L+       P   + V 
Sbjct: 62  RGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQRVD 121

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              ID I G++AVHQG+AL    L +P L D V     +++LD V DP NIGAILRSA A
Sbjct: 122 RARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSAAA 181

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    +I   R +P E+  LAK+ASGALE +P +R+ NL+  +  + S G  T+GL +  
Sbjct: 182 FGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDAGG 241

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   +  ++AL+LGAEG GLR  T+E    +A L M G +++LNVSNAAAVALY  
Sbjct: 242 GILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALYEM 301

Query: 277 QN 278
             
Sbjct: 302 SR 303


>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
 gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
          Length = 261

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 13/253 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98
           R  +    +++ G H   AAL NP+R    +L T   L +    A +        K V  
Sbjct: 3   RTRNHGGCMWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAA 62

Query: 99  QTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNI 147
           + I KI+G   + HQG+AL    L       +R   ++          ++LD V D +N+
Sbjct: 63  EKISKILGHGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNV 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA  F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G+
Sbjct: 123 GAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGY 182

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G+ +   K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSN
Sbjct: 183 WCYGMDAGGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSN 242

Query: 268 AAAVALYITQNHF 280
           AAA+ALY +    
Sbjct: 243 AAAIALYSSYLQL 255


>gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 246

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ ++L  K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157
             V  E     +A      +    D  +        L++VLD V DPHN+GA LR+A   
Sbjct: 62  DKVSGEQHQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++ 
Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L         AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY   
Sbjct: 182 KTLYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEIV 241

Query: 278 NHFA 281
              +
Sbjct: 242 RQRS 245


>gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 245

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + +   ++ ++   K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+      L              + + LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   ++   K A GA E++P IR++NL   L+++       +  ++       
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++G+EG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 313

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 102/280 (36%), Gaps = 14/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
            ++  H A    N +  +  +    + R       + + G + V  AL      S    Q
Sbjct: 36  EMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVV-GRNPVVEALREGVPASTLYVQ 94

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 95  QFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 ANAAYDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                P  R +N          +        +    +  E E     + +++G+EGKGL 
Sbjct: 214 TAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA V LY      A
Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 313


>gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 248

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGTRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     TLD            + LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY    
Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALR 245

Query: 279 HFA 281
             A
Sbjct: 246 QRA 248


>gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 318

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%)

Query: 27  HRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           H  YK+ Q+  +++            +   + G + V   L+        L   +     
Sbjct: 46  HAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHA-KVPATALYVAEGTKND 104

Query: 81  LDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129
                           V  V    +D++ G   +HQG+ L+  P     ++         
Sbjct: 105 ERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASA 163

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L++ LD++ DP N+GA++RS  AF   G+I  +R S S +AV  ++++G    +P 
Sbjct: 164 PQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPV 223

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +N+  +L++    G+Q +GL +     L+         +++G+EGKGL     ET  
Sbjct: 224 AKATNMVRSLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCD 283

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++  + M   +++LN S AA V L       
Sbjct: 284 TIMSIPMAKWVESLNASVAAGVVLSEFARQR 314


>gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 246

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMVESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
 gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
          Length = 261

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 112/278 (40%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+                    N++  K +     K ++  +     + G+  V  A
Sbjct: 1   MEIITSL------------------NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLAL 116
           +     ++     ++N   +      + +     + +  V  + ++K+ G +     +A+
Sbjct: 42  VKLKYSEVVC-FISENVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAI 100

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                ++      +N++  + LD V DP N+G I+R+A A   D +I +K  +   S   
Sbjct: 101 VKKRCINLGTLKYKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKA 160

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S+ G++  IP +   +  + ++  +      +G S    +P  Q   +     I G E
Sbjct: 161 IRSSMGSIFRIPVVTDVSTDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNE 220

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G G+  K    +    ++ +   +++LNVS A AV L+
Sbjct: 221 GNGVSQKILNISDKKIYIPLKSNVESLNVSIATAVILF 258


>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
 gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
          Length = 246

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 96/248 (38%), Gaps = 9/248 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  +KS    +     + G+         P  +I ++ A+++              +  +
Sbjct: 2   NLIKKSGVRKERGLFVIEGIRMFVEI---PKDRIVKIYASESFAYDNKEMLC---DYRYE 55

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            V       +       QG+      L      L       +L+VL+++ DP N+G I+R
Sbjct: 56  IVADNVFKMMSD-TKTPQGILAVVKMLEYDIEDLFKKDKVPMLVVLENIQDPGNLGTIIR 114

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      GII + +     +    +S  G+L  +P++   ++  A+  +     +    
Sbjct: 115 TAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSEDVVAAIHSLKQQNIKVFAA 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             + +    +E     +A+++G EG GL  +  + A     + M G +++LN + + AV 
Sbjct: 175 HLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVI 234

Query: 273 LYITQNHF 280
           LY      
Sbjct: 235 LYEAMRQR 242


>gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 261

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 92/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  R +   +      +        +     V +V    + KI         +     
Sbjct: 43  LQSGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVSDGILKKISS-LTCADDVLALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L A  +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++
Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA         ++L   L       F T             E   +  A + G EG G
Sbjct: 159 GMGAHFLSEIYPQADLEIWLASYKGRVFATALREEKQAVLY-NEDLREPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      +
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 271

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 113/278 (40%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+                    N++  K +     K ++  +     + G+  V  A
Sbjct: 11  MEIITSL------------------NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEA 51

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLAL 116
           +     ++     ++N   +      + +     + +  V  + ++K+ G +     +A+
Sbjct: 52  VKLKYSEVVC-FISENVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAI 110

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                ++      +N++  + LD V DP N+G I+R+A A   D +I +K  +   S   
Sbjct: 111 VKKRCINLGTLKYKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKA 170

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S+ G++  IP +   ++ + ++  +      +G S    +P  Q   +     I G E
Sbjct: 171 IRSSMGSIFRIPVVTDVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNE 230

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G G+  K    +    ++ +   +++LNVS A AV L+
Sbjct: 231 GNGISQKILNISDKKIYIPLKSNVESLNVSIATAVILF 268


>gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 362

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 17/252 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101
            E   +YG H+V AAL    R + ++  T     +       +    +   V  V  + +
Sbjct: 102 EETELIYGRHSVQAALE-KERTLNRIWITPQLRYDPRFHSLVNQAKANGSIVDEVDFRRL 160

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D+I    A+HQG+A + +      L              +L+V + +NDPHN+GAI+R+A
Sbjct: 161 DQITD-RAIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAEGLNDPHNLGAIIRTA 219

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  +R +   +A + K A+GALE+ P  R+ NL+ AL+++ + GF   G ++
Sbjct: 220 EALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRALEELKAAGFWIYGTAA 279

Query: 215 DSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              K +            + L++G+EG GL    Q     +  + + G   +LNVS A  
Sbjct: 280 KEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIPLRGNTPSLNVSVATG 339

Query: 271 VALYITQNHFAK 282
           +ALY       +
Sbjct: 340 MALYEIYRQRGQ 351


>gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 249

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103
           +   LYG+H V  AL    R+   +  +++                   VKT        
Sbjct: 2   KTELLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKTPDQSFFK- 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             G++   QG+A   +      L+              +++D +NDP N GA++R+A+  
Sbjct: 61  --GQDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCA 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I   + S   S  ++K+++GALEH+P  R+ NL  ++Q +   G    GL + + 
Sbjct: 119 GVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARAS 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +       A+++G EGKGLRP  ++    +  +   G + +LN S A A+++Y   
Sbjct: 179 GTVWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMYEVM 238

Query: 278 NHF 280
              
Sbjct: 239 RQR 241


>gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 299

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 111/294 (37%), Gaps = 18/294 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKL------RRNHRDYKKMQSFNQKSRHTSQPENLFLYGV 54
           M   S  +++      ++  A +                +   ++S    +     + G 
Sbjct: 1   MPTRSAPRNDCPQPCDNTEGAPMATPELTSLRSPRVTAARRLAKRS-FRGKERRFLVEGP 59

Query: 55  HTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
             V  A+ +    + ++ AT  A AR     +A      PV T     I ++        
Sbjct: 60  QAVREAIAH----LVEVYATPEAAARHTGIVEAARASRIPVLTASDDVIAEMSDTVTPQG 115

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            + L                +L+ VL +V DP N G +LR A A   D ++ T       
Sbjct: 116 IVGLCRFLDSPFEEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPY 175

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDK 228
           +    +++ G+L H+P      + +A+  + + G + +      ++ L++E    +    
Sbjct: 176 NPKAVRASVGSLFHLPVATGVPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAP 235

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
            A I G E  GL   T+  A  +  + + G  ++LN++ AAAV LY +     A
Sbjct: 236 TAWIFGNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRA 289


>gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
 gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
          Length = 306

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 9/255 (3%)

Query: 35  SFNQKSRHTSQPEN---LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHP 90
           S  + +             + G + V  AL      K   +++  +   R          
Sbjct: 52  SPARPAGTRRANGPDAPELVVGRNPVVEALRAGVPGKALYVVSDTDERIREAVKIAGDRG 111

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNI 147
            P+       +D++    AVHQG+AL+  P      +         L++  D + DP N+
Sbjct: 112 IPLLQAGRSELDRLTD-GAVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNL 170

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA AF  +G++  +R S   +A   KS++G L ++P  + +NLT  L+     G 
Sbjct: 171 GAIVRSAAAFGANGVVIPERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGC 230

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              GL S     +   EI +  + L++G+EGKGL     ET   +A + MPG  ++LN  
Sbjct: 231 FVAGLDSRGAITVADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAG 290

Query: 267 NAAAVALYITQNHFA 281
            AA +ALY      A
Sbjct: 291 VAAGIALYEIARRRA 305


>gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 248

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL       +   ++  +       PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E          +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244

Query: 281 A 281
            
Sbjct: 245 T 245


>gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii
           SP-6]
          Length = 244

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V+  +      + ++      ++A  R            +     + + ++ G
Sbjct: 6   LLFGFHAVTVRVKTAPASVLEVHVDPARRDARMRQFVARVEAAGIRLIETDDKRLGQMAG 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+            L   LDAV    L++VLD V DPHN+GA LR A       
Sbjct: 66  -NTRHQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K ++   +A +AK ASGA E +PY  ++NL   L ++     + IG S D+ + + 
Sbjct: 125 VIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVIGTSEDATQSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A++LGAEG G+R  T++T   + H+ M G +++LNVS A+AV LY      
Sbjct: 185 DIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQR 243


>gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
 gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
          Length = 257

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 105/253 (41%), Positives = 149/253 (58%), Gaps = 7/253 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ + T   E ++L+G+H V  AL N +R+  QL+ T NA A+L  DA      
Sbjct: 5   KWVVRKEQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148
             + V P+  +  +   +VHQG ALE  PL   +L+ V        +M+LD V DPHN+G
Sbjct: 64  APEVVDPRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL D ++ +   G+ 
Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYI 183

Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  +++  LEQ I   ++  IAL+LGAEG GLR KT+ET  S+  +   G   +LNV
Sbjct: 184 VLGLDGEARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243

Query: 266 SNAAAVALYITQN 278
           SNAAA+ALY T+ 
Sbjct: 244 SNAAAIALYATRR 256


>gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
          Length = 249

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102
           + +++G + +   L +  RK+ ++L  + +                   PV+TVP   +D
Sbjct: 2   SEYIWGRNPIMETLQS-VRKVKRILLAEGSKREGGTLNTIIQEAQKRQIPVETVPRARLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K AVHQG     A     + D              L++LD + D +N+G++LR+A 
Sbjct: 61  QMS-KGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQDVNNLGSLLRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  +  +   +A + K+++GA EHI   R +NLT  +  +       +GL+ +
Sbjct: 120 AAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLKQQNIWIVGLAGE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 Q      +A+++G EGKG+    +E    +  L M G I +LN + A ++ LY 
Sbjct: 180 GDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVAGSITLYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 ALRQRS 245


>gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus
           TPSY]
          Length = 248

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGARLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     TLD            + LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY    
Sbjct: 186 TLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALR 245

Query: 279 HFA 281
             A
Sbjct: 246 QRA 248


>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
           oleovorans Hxd3]
          Length = 256

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 13/250 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96
           +   + E   LYG+H V AA+    RK+  L        R      L     H  PV  +
Sbjct: 2   KRPDRSET--LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEI 59

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150
           P + ++++ G   VHQG+A   +      L          ++  ++V D + DPHN+GA+
Sbjct: 60  PARDLEQMTG-GKVHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGAL 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A+     G+I  K  + S +    K+++GALE +P  R +N+   L  +   G    
Sbjct: 119 ARTALCAGVHGLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIA 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL    ++ +        +AL++G EG+G+R    +    +  +    ++ +LN S A A
Sbjct: 179 GLDGRGEQTIYDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGA 238

Query: 271 VALYITQNHF 280
           VA+Y      
Sbjct: 239 VAMYEAFRQR 248


>gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 270

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 15/269 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNPSRKIFQLL--ATKN 76
           +++N++ YK+++S N++ ++    E       + G + +  A+ +       L     + 
Sbjct: 1   MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSGREINKILFQEGIEK 60

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VR 130
              +  +          + VP + +D    +   HQG+    AP     LD       + 
Sbjct: 61  GRLKAIFSIANEKKIVCQEVPKRKLDNSTTER--HQGVIAFVAPYNYFELDEVLNKIEIN 118

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +  L++LDH+ DPHN+GAI+RSA A    G+I  KR +   S    K+++GA+EH+P I
Sbjct: 119 KNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPVI 178

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETAT 249
           R+S+L DA++K+   GF   G +   +     +I  D  + +++G EG+G+         
Sbjct: 179 RVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNECD 238

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + HL M G +++LNVS AA + +Y    
Sbjct: 239 FLYHLPMLGKVQSLNVSVAAGIVMYERIK 267


>gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 263

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   + L     KI  L +T+ AL   D+
Sbjct: 13  SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQENK-KIHSLFSTEQALNHPDF 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L +      V  + + + +                 +          L++  ++V D
Sbjct: 72  EQILEYYQGHVFVLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTLIL--ENVQD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L D L+   
Sbjct: 130 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILE--- 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +       SS   + + Q+      A ILG EG+G      + A ++  +  PG  ++L
Sbjct: 187 KFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 245

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 246 NVAVAGSICFFEMVRQR 262


>gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
          Length = 258

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 101/257 (39%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   + L     KI  L +T+ AL   D+
Sbjct: 8   SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQENK-KIHSLFSTEQALNHPDF 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L +      V  + + + +                 +          L++  ++V D
Sbjct: 67  EQILEYYQGHVFVLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L D L+   
Sbjct: 125 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILE--- 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +       SS   + + Q+      A ILG EG+G      + A ++  +  PG  ++L
Sbjct: 182 KFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAVAGSICFFEMVRQR 257


>gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
 gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila
           RKU-1]
 gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2]
 gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
          Length = 242

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 10/237 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +YG   +  AL N    I ++   K     +      +              + +  + G
Sbjct: 3   VYGRKILEEALRNN-VPIKKVFFQKMQNPGSYFLSLVEEVEKRGIKYSFESEEKLKNLSG 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            +  HQG+  +       +++ +   +   L+++LD + DPHN+GAI+R++V    +GII
Sbjct: 62  TKK-HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  + K + G +       ++NL   ++++   G      S     P+ +E
Sbjct: 121 IPKDKSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVW-TYASDIDGTPIYEE 179

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 A + G EG+G+R   +E    +  + M   I +LNVS +  V L+      
Sbjct: 180 DFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236


>gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 262

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK+++S    +    +     L G+H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A         V ++ +++  
Sbjct: 61  HAEAREIVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPARVADTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDIDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
 gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
          Length = 246

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 9/242 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   + G + V  A  +     K++     ++   +            +  V  + +D++
Sbjct: 3   EEFTIEGRNAVLEAFRSGKTIDKLYVQKGVQDGPIQSIIREAKKKDTILNFVERERLDQM 62

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +      +A   A   +   D             L +LD + DPHN+GAI+R+A    
Sbjct: 63  SEEGHHQGVIAHAAAYEYAEVEDLLKAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR +   +A +AK+++GAL + P  +++NLT  ++++   G   +       +
Sbjct: 123 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEELKKRGMWFVCA-DMGGE 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +      I L++G+EG G+    +ET   +A + M G I +LN S AA V  Y    
Sbjct: 182 VMYRLDLKGPIGLVIGSEGNGVGKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEIVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
 gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
          Length = 259

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 147/249 (59%), Gaps = 9/249 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NP+R   +L+ TKNA  +L  DA        +  
Sbjct: 10  KEQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKL-QDAIDAAGITPEMA 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL   +L+ V          L++LD V DPHN+GAIL
Sbjct: 69  DPRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  +  S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +G
Sbjct: 129 RSAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLG 188

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ +++  ++     +++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNA
Sbjct: 189 LAGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNA 248

Query: 269 AAVALYITQ 277
           AAV+LY ++
Sbjct: 249 AAVSLYASR 257


>gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 279

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 91/258 (35%), Gaps = 4/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             ++   K+++      +H SQ       G+   + AL       +  L  +     +  
Sbjct: 18  SHSNPIVKEIKGLVTLRKHRSQSGLFVAEGLKLATDALAAGWSVRYLALGPEARDNPVAQ 77

Query: 84  DANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            A          +  V    +  I  ++     + +    L          + + + LD 
Sbjct: 78  RAAASAKARGALILEVNTGVLAAITRRDNPQMVVGVYEQQLTPVDAIDPARATVWIALDR 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G++     +   +    ++  G+L H+P  R+S       
Sbjct: 138 VRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLSTD-AFKA 196

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               W    +G   +          ++   L++G E +GL        + +  +   G  
Sbjct: 197 LAAKWPGMVVGTHLEGSVDYRSLDYSEPALLLMGNEQQGLPADMAACCSHLVRIPQVGQA 256

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  +ALY  + 
Sbjct: 257 DSLNLAVATGIALYEIRR 274


>gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU045]
          Length = 255

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 8   EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D              +++LD + DPHN+G+ILR+A A 
Sbjct: 68  A--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADAS 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++ 
Sbjct: 126 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 186 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 245

Query: 278 NHF 280
              
Sbjct: 246 RKR 248


>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
          Length = 315

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++I+  K  H AKL R+ R            RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRIYHAK--HKAKLERDRR---------NSGRHQKETAEMVV-GRNPVIECLHAK 85

Query: 64  -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P+  ++ +  T+N   RL     +      P+  V    +D++ G   +HQG+ L+  P
Sbjct: 86  VPATTLYIVAGTRNDK-RLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +D             + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +
Sbjct: 144 YKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R +N+T  +Q+    G+Q IGL +  +          D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +E    +  + M   +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQR 311


>gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus
           succinogenes 130Z]
          Length = 245

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L      + ++ A K     RL    N  H     V+ +  QT+D     
Sbjct: 5   IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKA-H 63

Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             VHQG+     P               + + LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 64  GEVHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL         S     +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
          Length = 246

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALVEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I   +   + ++    D        V  +  +  + + G        A+   P
Sbjct: 42  YQSQIEVIQLFIVDTDRMSSSIIDYAK----EVYQINLKVAEALSGTVTPQGFFAIIKKP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               TL        ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 98  TYDKTLAKQ-----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I         Q         +  +        Q       ALILG EG+G+
Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDIEAQANF----ALILGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P   +  T    + + G  ++LNV+ A ++ +Y  +
Sbjct: 209 NPDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245


>gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 262

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  AL+
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   S   + V ++ +++  
Sbjct: 61  HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPASALPERVSDTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 91]
          Length = 262

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A         V  + +++  
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IE---RLSIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
 gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
          Length = 264

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 13/260 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
             ++   K +    Q +R   + + + L G+H + AAL             + AL R + 
Sbjct: 10  SPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVPAQC-FINEAALGRAEV 68

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A LP       VP   + K+    +  + +A+   P         R S   ++L+ 
Sbjct: 69  SVLLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP------RRSGSCLLLED 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ILRSA A     +  +K  +   S  + ++  GA   +     ++L    +
Sbjct: 123 IQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHEAADL---AE 179

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +  +  + +    +  + L  +     +A + G EG G+     + A     + MPG  
Sbjct: 180 VLGGFAGRKLVTHLEGSQSLYAQDLRGDVAFVFGNEGAGVSAGLLQLADCRVRIPMPGHA 239

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AA + L+      
Sbjct: 240 ESLNVAMAATICLFERVRQL 259


>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
 gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
          Length = 256

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 26/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  K +EK  ++K                       S+   + +     G+ TV  A
Sbjct: 1   MAYIKSKDNEKFKTIKSLLA-------------------SKKRYKEKKYLAEGLRTVELA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + +  I  ++  + +   LD          V T+     D++   E     + +    
Sbjct: 42  LEHGAD-IDMVILREGSEFDLD-----LKDLRVHTLSKDLYDQVSDTENSQGIMVVVKMR 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            LS         + ++VLD + DP N+G I+R+A A   D I   K      +  + +SA
Sbjct: 96  DLSKEDFDPSRHRKVLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSA 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  +   I + +    L  +   G Q +  S D+    ++    D  AL+LG E  G+
Sbjct: 156 MGSGFY-MDILLESQEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEANGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                E +  +  + M G  ++ NV+ +AA+ +        K
Sbjct: 215 NDFWIENSDLLVKIPMYGKAESFNVAISAALLMSKVIKRKNK 256


>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 315

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 132/288 (45%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++I+  K  H AKL R+ R            RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRIYHAK--HKAKLERDRR---------NSGRHQKETAEMVV-GRNPVIECLHAK 85

Query: 64  -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P+  ++ +  T+N   RL     +      P+  V    +D++ G   +HQG+ L+  P
Sbjct: 86  VPATTLYIVAGTRNDK-RLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +D             + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +
Sbjct: 144 YKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R +N+T  +Q+    G+Q +GL +  +          D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +E    +  + M   +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQR 311


>gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
 gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 19/292 (6%)

Query: 5   SKKKSEKIFSLKDS--HYAKLR-RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVS 58
           SK   +K    + S  H  K R   +R  +     +  SR            +YG H V 
Sbjct: 47  SKPDWQKGDRPRKSSDHLGKSRVEGNRIRQSFSRDHLDSRFESIDEDTSPDLIYGRHAVE 106

Query: 59  AALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           AA+    R + +L        ++  R        +   V  V    + ++  + A HQG+
Sbjct: 107 AAIEAG-RSLNRLWVNAKLHYDSHFRPLIATAKANGSVVDEVENVRLSQMT-QGASHQGI 164

Query: 115 ALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             + +      L+             +++  D + DPHN+GAI+RSA A    GI+  +R
Sbjct: 165 VAQVSAYEYVDLEVLVQQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQR 224

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   ++ +AK ++GALE+IP  R+ NL  AL+ + S  F   GL++++ + +     + 
Sbjct: 225 RAVGVTSTVAKVSAGALENIPIARVINLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSA 284

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + L++GAEG GL    Q     +  + + G   +LN S A  +ALY     
Sbjct: 285 PVVLVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQ 336


>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 267

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 102/259 (39%), Gaps = 5/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+++  K  +   ++ R         + G   +  A+    + +  L + +  + R   
Sbjct: 4   SRSNQQVKWFRLLRER-RGRKASGAFLVEGPRAIQQAMVAGHKPLKVLYSPEVVVRRDVV 62

Query: 84  DANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           +  L       P+  V    +  +         +A        P      N+  ++VLD 
Sbjct: 63  NKVLGQIGSETPLLEVSEDVLSSVSDTVTSQGIIAAFELLSWHPREGVNANAGPVLVLDR 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V+DP N+G +LRSA A     ++ ++  +   +    ++++GAL       +    +  +
Sbjct: 123 VSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALF-AVSFAVLPWEEIHE 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +H+   +     SDS +           A+++G+E  GL  +    +T    + M   I
Sbjct: 182 VLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEASGLSHQALSLSTHNLWIPMQNNI 241

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN + A ++ L+ ++  
Sbjct: 242 ESLNAAVAGSILLFESRRQ 260


>gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 248

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H++++ +   +  +  +   +   +A           +           +D ++ 
Sbjct: 6   IIYGFHSITSRIRLDASSVKDVYLDESRNDARMADLLKLIKENDIAFHLSSKDRLDGMI- 64

Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             + HQG+                   +      LL++LD V DPHN+GA  R A A   
Sbjct: 65  PSSKHQGVIANIFESKQKYVTIEDVLEEVTSEPPLLLILDGVEDPHNLGACFRVADAMGV 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             II  K  +   +A + K A G  E +P+I ++N+   ++ +   G   IG   ++K  
Sbjct: 125 HAIICPKDSAVGVNATVRKVACGGAESVPFIAVTNIGRTIRTLKDQGLFIIGTDGEAKHN 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L QE     IA++LG+EGKG+R  T+E   S+  + M G +++LNVS A+ + L   +  
Sbjct: 185 LYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQ 244

Query: 280 FA 281
            +
Sbjct: 245 RS 246


>gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 262

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A         V  + +++  
Sbjct: 61  HEEARGIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 249

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 2   EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D              +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  + + 
Sbjct: 120 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDSGFWIAGTEASNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
 gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
          Length = 247

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + F+ G + V  AL +     KI+    ++                 V+ VP Q I+ +V
Sbjct: 3   SEFIAGRNPVLEALKSGRDINKIWIAEGSQKGSMGQITSLAKEKKVLVQFVPKQKIEGMV 62

Query: 106 GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+  + A      +D               ++LD + DPHN+G+I+R+A A  
Sbjct: 63  RD--NHQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPHNLGSIMRTADASG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   +A +AK+++GA+EHIP  R++NL   + ++   G    G  +    
Sbjct: 121 VHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKERGVWVAGTDAKGAD 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      I L++G+EGKG+    ++    +  + M G + +LN S AA++ +Y    
Sbjct: 181 DYRRLDGTLPICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTSLNASVAASILMYEVYR 240

Query: 279 HF 280
             
Sbjct: 241 KR 242


>gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei DM98]
 gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 14]
 gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 9]
 gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei B7210]
 gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 7894]
 gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei BCC215]
 gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
 gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344]
 gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1]
 gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229]
 gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668]
 gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106a]
 gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247]
 gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
          Length = 262

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A         V  + +++  
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 247

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 47  ENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           EN ++ G   V  AL          + +             +        V+ VP QT+D
Sbjct: 2   ENEWVIGRRAVMEALKAGRSMGKLLVAEGAGRGKGGLGPLLEEARRQGVDVQQVPRQTLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++      HQG+A +  P     L+              +++LD + DPHN+G+ILR+A 
Sbjct: 62  RVAAGL-NHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPHNLGSILRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  KR +   +  +AK+++GA+EH+P +R++NL     ++   G   +   +D
Sbjct: 121 ASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKERGVWLVAGDAD 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +    ++   +  +AL++G EGKG+  + +E       L M G + +LN S AAA+ +Y 
Sbjct: 181 ASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNASVAAALLMYE 240

Query: 276 TQNHFAK 282
                 K
Sbjct: 241 VLRGREK 247


>gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 246

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G ++V  A+        I+     K+   +            +K V  + +D +  +
Sbjct: 2   IIIGRNSVIEAIKKDRNLDTIYIKSGDKDERLKYIISIAKNKKILIKEVDRKKLDALA-Q 60

Query: 108 EAVHQGLALETAPLLSPTLDA----------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              HQG+A   +       +                 +M+LD + DPHN+GAI+RSA   
Sbjct: 61  GENHQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIEDPHNLGAIIRSAHLS 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I   R S +  + + K + GA  ++  IR++NL DA++K+   G     L     
Sbjct: 121 GVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKLKKAGLWIYCL-DMGN 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      IA+I+G EGKG+    ++ +  +  + M G I +LN S A+++ ++   
Sbjct: 180 DYYFNTDLTGDIAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEVL 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
 gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
          Length = 247

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 101/277 (36%), Gaps = 37/277 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  ++ KI +                    +   K ++  +     + G H +  A
Sbjct: 5   MEKISSLQNAKIKNW-------------------TLLHKKKYRDETGLFLVEGEHLIGEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L   +  +  ++    +    +          +  V P  + K+    +         A 
Sbjct: 46  LAANA--VETIVTDTTSPFDFEH---------IVEVTPAIMAKLSENVSN----VHYIAV 90

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                LD  + ++LL+ LD + DP N+G ++R+A++F  DG+  +       +    +S 
Sbjct: 91  CRQRKLDITKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRST 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GAL HIP +R    T                       + +    + +A ++G EG+G+
Sbjct: 150 QGALFHIPVVRKDFSTLIPALQSQGVKVIATS-LQESTTMGEIPVTECMAFVMGNEGQGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  A     + M G  ++LNV+ A  + +Y  +
Sbjct: 209 HQDIIAQADFRVRIEMEG-FESLNVAVAGGIIMYHYR 244


>gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099]
 gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099]
          Length = 274

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   Q       G+  V  AL+   +    + A             
Sbjct: 9   NPLIKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVEKVA 67

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 68  ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDIRADNGDVWVALDRVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    G+I     +   S    ++  G++  +P  + +       +  
Sbjct: 128 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTEAFLAWRGG 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +      +     + L++G E +GL      +   +  +   G   +L
Sbjct: 188 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 247

Query: 264 NVSNAAAVALYITQN 278
           N++ A  + L+  + 
Sbjct: 248 NLAVATGIMLFEIRR 262


>gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
 gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
          Length = 254

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 5/243 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
            +     +YG H V  AL       KI        A              PV+ VP + +
Sbjct: 4   KEGGAELVYGRHAVKEALLAGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPAEAL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           D++     VHQG     +P    +LD +   +   L+VL ++ DP N+GAILR+A A   
Sbjct: 64  DRLTA-RGVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAAVGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I   R +   +A   K+++G  EH+   R++NL   L+ +   GF  +G  +D+K  
Sbjct: 123 EGVIIPSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADAKVS 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +   N+ + +++G E  GL    +     +  +     +  LN S AAAV LY     
Sbjct: 183 LWEAEWNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEVLRR 242

Query: 280 FAK 282
             K
Sbjct: 243 QMK 245


>gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
 gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
          Length = 258

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 7/252 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+         
Sbjct: 5   KWVVQKEQEKKADVNQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIAKA-GI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIG 148
             + V P+     +   +VHQG  LE  PL   TL  V     +  +++LD V DPHN+G
Sbjct: 64  EPEVVDPRKFRPPLDPGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       ++  + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+ 
Sbjct: 124 AILRSAEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYL 183

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++   +E      ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNV
Sbjct: 184 VLGLDGEADMTVESALEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNV 243

Query: 266 SNAAAVALYITQ 277
           SNAAA+ALY ++
Sbjct: 244 SNAAAIALYASR 255


>gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6]
 gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6]
          Length = 246

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQL---AAFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +D  +   L +  + V DP N+G I+R+A A    G+I +++ +   S    +S 
Sbjct: 92  EEVGQVDLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSEKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 246

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++     +  A  P       V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALESYR---NQLAAFPQTI---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQVDFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSSQRLLEEAKKASIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
 gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
          Length = 247

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG ++V   L +   KI ++    N      +           P+     + + +I G
Sbjct: 8   VVYGRNSVLELLGSDPEKIEKIYMQFNTGHFKLKEILITARRSKIPLGKARLEKLSEIAG 67

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+    + +    L+ +         LL+VL  +NDPHN+GAI+R+A A + DG
Sbjct: 68  TTK-HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +      +A + K+++GA+ H    ++ +L   L+ +   GFQ I     ++K   
Sbjct: 127 VILVEGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYT 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       A I+G E KGL         ++  + M G +++LNVS +A V LY      
Sbjct: 187 EVDFRIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQR 245


>gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa
           M23]
 gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G++ V +++ N +  + ++L     KN+      +        V+ V  Q +D + G
Sbjct: 7   WIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A  L    D            LL+VLD V DPHN+GA LRSA A    
Sbjct: 67  GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ + +  L
Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+      
Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246

Query: 281 A 281
            
Sbjct: 247 T 247


>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 318

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 120/274 (43%), Gaps = 14/274 (5%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP--SRKIFQLLATK 75
            A+ R  H+ Y+   +  ++ +   +   +   + G + V  AL     +  ++  L  +
Sbjct: 40  KAEDRPGHKAYRSANAATKRDQARQKKADKPELIAGRNPVVEALRAGVPATALYVALNIE 99

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------- 127
            +                +  +P + +D+     AVHQGL L+  P      D       
Sbjct: 100 IDDRVNDAVRLAGDKGISILEIPREELDRKT-NRAVHQGLGLQVPPFEYAHPDDLMAAAR 158

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L + LD V DP N+GA++RSA AF   G++  +R S   +AV  ++++G    +
Sbjct: 159 NSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKL 218

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246
           P    +NLT  L+   + G   +GL +D    +++     D + ++LG+EG+GL    +E
Sbjct: 219 PIAVATNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRLVRE 278

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  +   + M   +++LN S AA V L       
Sbjct: 279 TCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312


>gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
 gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K++ L   ++   R        H   +  V  + +++I    
Sbjct: 11  IEGRNAVMEAFRSGKPIDKVYILDGCQDGPIRSIVREAKKHDTILNFVTKERLNQISETG 70

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A   A   +   D             L++LD++ DPHN+GAI+R+A      G+
Sbjct: 71  RHQGVIAQAAAYEYAQVEDMLELAKQKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +A +AK+++GAL + P  +++NL   ++++   G   +         + +
Sbjct: 131 IIPKHRAAGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCA-DMDGDVMYR 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 I L++G EG+G+    +ET    A + M G I +LN S AA V  Y      
Sbjct: 190 VNLKGPIGLVIGNEGEGVGRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQR 247


>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 263

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+   +K+++       +  +     L G H V+   +N       +L         + 
Sbjct: 8   SRDSATFKRLKKIYSSKSYRLEVGKTILDGPHLVNTCCDNGMDIAEFILDASIKTDENNR 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    +  +  +    +   ++V+    L     +           L ++LD + D
Sbjct: 68  LLTKYPKKKLHILSHELFCALSDLDSVNG---LMAIIDIPSHPYYSNGVGLHLLLDDIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILR+  A     +  +K      S  + + + G    +   +  +L   + ++ 
Sbjct: 125 PGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQEDLALLIDRLE 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F                  +  IA ILG EG+G+     + +  M  + M   +++L
Sbjct: 185 FSVFSLGMQGESVLNRK----FDQNIAFILGNEGRGISSTLLKKSDQMLSIPMIKNVESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV  AA++ +Y     F
Sbjct: 241 NVGVAASIVIYEHARQF 257


>gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis RP62A]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E++ + G H V  A+ +     KI      K                 V+TVP   +D +
Sbjct: 2   EDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D              +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++ 
Sbjct: 120 GVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
 gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
          Length = 325

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D      AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLDVATD-GAVHQGVAIEVRG 154

Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                               LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               K ++GA   +P  R +NL  AL++    G+  +GL      PL      +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324


>gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 246

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P                   LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
 gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 313

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 14/273 (5%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
            A+ R  H  +K+     ++ R   Q E    + G + V   L+        L   + A 
Sbjct: 39  KAEDRTYHAAHKRKLERERRDRGRHQREMPELVVGRNPVLECLHA-RVPATALYVAEGAA 97

Query: 79  ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128
                   +        PV  V    +D++ G   +HQG+ L   P     +        
Sbjct: 98  NDERLSEAVHTAAGRNIPVLEVNKLELDRMTG-NGMHQGIGLAIPPYEYADVHDLIANAA 156

Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   + ++LD++ DP N+GA++RS  AF  +G+I  +R S S +AV  ++++G    +
Sbjct: 157 TSKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARV 216

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  + +N+T  +++    G+Q +GL +     L+     D + +++G+EGKG+    +E 
Sbjct: 217 PVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVREN 276

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  +   G +++LN S AA V L       
Sbjct: 277 CDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309


>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           Fw109-5]
          Length = 245

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YG++ V   L      + +L   +     A               V++ P   +D++ 
Sbjct: 3   VVYGLNPVREVLRAGGEGLSELWLAEGGTRGAAFGELERLGRAAGAKVRSAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      ++             L++VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  K  +   +  +AK+++GA+E  P  R++N++  L+ +   G  ++ L++D   
Sbjct: 122 AHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEAGIWSVALAADGDA 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL        IAL+LG+EG+GLRP  ++T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFAK 282
              +
Sbjct: 242 QRGR 245


>gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383]
 gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 247

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
 gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
          Length = 347

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 18/291 (6%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ----KSRH--TSQPENLFLYGVHTVSA 59
            +K+ K    K+ H  K R  H  + +     Q    KS+   +++ E+  +YG H+V A
Sbjct: 41  SQKNGKPP-RKNYHSRKPRAKHSHHSEETQPKQHGYPKSKLVSSTEEESDLIYGRHSVIA 99

Query: 60  ALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           AL N  +     + ++   +            +   +  V P+ + +I  K   HQG+A 
Sbjct: 100 ALQNQHQLNRVWIISQLRYDPRFHSLLVQAKANGTVIDEVAPKRLSQIT-KGGNHQGVAA 158

Query: 117 ETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + A      L+             +L+  D +NDP N+GAI+R+A A    G++  +R +
Sbjct: 159 QIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQNLGAIIRTAEALGAQGLVIPQRRA 218

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              ++ + K A+GALE  P  R+ NL++AL+++ + GF   G ++ + K L +      +
Sbjct: 219 VGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAGFWIYGTAAGTGKLLHKVDLTGSV 278

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            L++G+EG GL  ++Q     +  + + G   +LN S A A+ LY T    
Sbjct: 279 VLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNASAATAMVLYETYRQR 329


>gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V   L      I  +      ++A  R            +       + K+ G
Sbjct: 10  VLYGFHAVGVRLKTAPTSILDIYYDASRRDARMRQFIARAQEAGVRLIEADGLRLAKLAG 69

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+A    P+         LD +    LL+VLD V DPHN+GA LR A       
Sbjct: 70  NHG-HQGVAARVQPIELARSLDDLLDDLVGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ + L 
Sbjct: 129 VIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGELKERNIWCIGTSDDAPQTLY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       AL+LGAEG+G+R  T++T  ++  + M G +++LNVS A+ V LY       
Sbjct: 189 QSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKGGVESLNVSVASGVCLYEALRQRT 248


>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
 gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
          Length = 262

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 4/261 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           +  N+   K+     +K +H ++     + G+H V  AL +            K   A L
Sbjct: 4   ISPNNARVKEWAQLLEK-KHRARQHKYIVEGIHLVQEALRSDVAVETVAYDLDKGIPAEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDH 140
           +    +  P     V    I K    +      A+      S  +    +   L+MVLD 
Sbjct: 63  NGLNPVDQPVEWVPVSAAVIAKCTDTKTPQSVFAIVRKEERSVFSALLEQPDALVMVLDG 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+RSA A    G+I     +   +    +S  G+L H+P I  S   + L 
Sbjct: 123 VQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLE-EFLP 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +  S G + I  S D+              L++G EG+G+   T         + M G  
Sbjct: 182 QAKSKGARLISTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQA 241

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN + A+ V L+       
Sbjct: 242 ESLNAAMASTVLLFEAMRQRN 262


>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 266

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 99/260 (38%), Gaps = 11/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
             ++ + K +    Q SR   +   + L G+H   + L      + ++   + A  + + 
Sbjct: 10  SPHNDEVKALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGE-LSRIYLNEAAAGKPEV 68

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                +LP    V ++P   + K+    +         A    P+ +A       ++L+ 
Sbjct: 69  RRLLDSLPPGSTVVSLPEAVMSKVTALAS----AGELLALSPRPSPEAPPAQAARVMLED 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ILR+A A     +  +K      S  + ++  GA   +     ++L   L 
Sbjct: 125 IQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGAHFALRIHEHADLAGELS 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +       T    S S    +       +A + G EG G+       A +   + MPG  
Sbjct: 185 RFGGRKLVTHLEGSSSLYGHD---LTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHA 241

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AA V L+      
Sbjct: 242 ESLNVAMAATVCLFERVRQL 261


>gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
 gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
          Length = 263

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 13/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83
             R +KK   F Q +        +   G   +  A+       +IF L      +     
Sbjct: 2   EQRKFKKPGGFRQHAPRPKASSLVI--GRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLM 136
                +  P+  VP + ++ +    A HQG    T  +    L  V +         L +
Sbjct: 60  QLAEQYNIPINLVPVEKLNGLTS--ANHQGCVAITGNINYLDLQDVISHVTEQGQTPLFL 117

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD + D  NIGAI RSAV      II   R   + +    KS++GALE I   R+++L 
Sbjct: 118 ILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSLL 177

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A+  +H  G + I    +++  L      + +A+I+G+E KG+ P   + + ++ H+ M
Sbjct: 178 KAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIPM 237

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G  ++ NVS AA + LY      
Sbjct: 238 AGNFESFNVSVAAGIILYEAMKQR 261


>gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G++ V +++ N +  + ++L     KN+      +        V+ V  Q +D + G
Sbjct: 7   WIVGINAVVSSIENDAEHVCEVLVEAGSKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A  L    D            LL+VLD V DPHN+GA LRSA A    
Sbjct: 67  GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL  +++  L
Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGEAETSL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  K+AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+      
Sbjct: 187 YALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246

Query: 281 A 281
            
Sbjct: 247 T 247


>gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 249

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + V  A  +        +        +  +  +A       +  V  + +D++  
Sbjct: 9   IIEGRNAVLEAFRSGKTIDRLFILDGCKDGPVQTILREAKKHKDTVISFVKKERLDQLSE 68

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                  +A   +   +   D             +++LD++ DPHN+GAI+R+A      
Sbjct: 69  TGKHQGVIAYGASYNYAEVDDILERAKQKGEDPFIIILDNIEDPHNLGAIIRTANLAGAH 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  + S +A +AK+++GA+ + P  +++N+ + ++ +   G             +
Sbjct: 129 GVIIPKHRAASLTATVAKASAGAINYTPVAKVTNIANTIEDLKDKGLWFACA-DMGGTTM 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      I L++G EG G+    +E    +A + M G I +LN S A  V  +      
Sbjct: 188 YQLNLKGPIGLVIGNEGSGVSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFEVVRQR 247


>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
          Length = 253

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+ +  N K +   +     L G+H V  AL    +    L+ +K        + 
Sbjct: 7   SNSRVKEWKKLNTK-KGRKKQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +P    V  +  +    I   +   QG+    +          ++    ++LD V DP 
Sbjct: 63  EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I  +            
Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   ++  +      ++   AL++G EG G+  +  E  +   ++ +    ++LNV
Sbjct: 182 VPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240

Query: 266 SNAAAVALYITQN 278
           + AA + ++  + 
Sbjct: 241 AVAAGILMFALKK 253


>gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
 gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
          Length = 256

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 7/246 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPP 98
           + +  +   L G H V+A L   ++ +  +    +   R   D           +  V  
Sbjct: 8   NRAMAKQKLLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDA 67

Query: 99  QTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           + +  + G +     +A          L   LD +  + LL+VLD V DPHN+GA LR A
Sbjct: 68  ERLRGMAGTDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVA 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   +G + 
Sbjct: 128 DGAGAHAVIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTAD 187

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + K L        +A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 188 GTDKTLYDVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLY 247

Query: 275 ITQNHF 280
                 
Sbjct: 248 EAVRQR 253


>gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella
           anatipestifer DSM 15868]
 gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella
           anatipestifer DSM 15868]
          Length = 258

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 12/249 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++  + E+  ++G+  V  A+       K+F     + ++          H      VP 
Sbjct: 10  KNNDKKEDF-IFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYVELKALLAKHKIRPNYVPI 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
           + ++        HQG+    + +   +++           +  L++LD + D  N GAI 
Sbjct: 69  EKLNHFT--RKNHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFGAIC 126

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  +   G     
Sbjct: 127 RTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVSVFS 186

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +  ++K +         AL++G E KG+  +    +     L + G  ++LNVS A   
Sbjct: 187 ATEKAEKLIYDVDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGA 246

Query: 272 ALYITQNHF 280
            LY      
Sbjct: 247 ILYEVVRQR 255


>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 261

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +  +L   D V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
          Length = 253

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 8/247 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQ 99
                +  +YG+H V A L     +  ++   K    +       A       ++    Q
Sbjct: 7   RGSHXSEXIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQ 66

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSA 154
            +D+          +A           D        +   L++LD V DPHN+GA LRSA
Sbjct: 67  YLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSA 126

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   +A   K A GA E +P IR++NL    + +       +G + 
Sbjct: 127 DAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAG 186

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q     ++AL+ GAEG+G R  T+E    +  +   G + +LNVS A  + L+
Sbjct: 187 EADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLF 246

Query: 275 ITQNHFA 281
                 +
Sbjct: 247 EAVRQRS 253


>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
           LGP32]
 gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
           splendidus LGP32]
          Length = 246

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P                   LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
 gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
          Length = 321

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 16/256 (6%)

Query: 39  KSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFP 92
           +     +P  E  ++ G +++  AL      I  +        +   +    A      P
Sbjct: 68  RPPARRKPAGETEWIAGRNSIVEALRA-ELPITGIYVASRIETDERVKEILAAAGDKGIP 126

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPH 145
           +     Q +D+   + AVHQG+A    P                    L++ LD V DP 
Sbjct: 127 LLEASRQDLDRHT-ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPALVVALDGVTDPR 185

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RS  AF   G++  +R +   +A   K+++GA    P  R +NL  A+++    
Sbjct: 186 NLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKA 245

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +GL ++    L Q    +  + L++GAEG GL    +E    +  + M G  ++LN
Sbjct: 246 GLFVVGLDAEGDVLLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLN 305

Query: 265 VSNAAAVALYITQNHF 280
              AA +ALY    H 
Sbjct: 306 AGVAAGIALYEVARHR 321


>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 318

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 115/271 (42%), Gaps = 19/271 (7%)

Query: 27  HRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           H  YK+ Q+  +++            +   + G + V   L+        L   +     
Sbjct: 46  HAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHA-KVPATALYVAEGTKND 104

Query: 81  LDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------V 129
                           V  V    +D++ G   +HQG+ L+  P     ++         
Sbjct: 105 ERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASA 163

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L++ LD++ DP N+GA++RS  AF   G+I  +R S S +AV  ++++G    +P 
Sbjct: 164 PQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPV 223

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +N+  +L+++   G+Q +GL +     L+         +++G+EGKGL     ET  
Sbjct: 224 AKATNMVRSLKQLQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCD 283

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++  + M   +++LN S AA V L       
Sbjct: 284 TIMSIPMAKWVESLNASVAAGVVLSEFARQR 314


>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
 gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
          Length = 261

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKQISSPNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +    +VLD V DP N+G +LRSA A     ++  +  +   S  + ++
Sbjct: 102 IPLGGTLPDKGDC---VVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E      A + G EG G
Sbjct: 159 GMGAHF-LLDIYPQADLEIWLARYEDRVFATALREEKQTVLYGEDLCKPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA V L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATVCLFEQMRQRA 259


>gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
 gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
          Length = 275

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 1/264 (0%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            K   +       R  K       +         + LYG+HTV AA  N  RK  +L AT
Sbjct: 9   WKTQRHGSGNAQGRFSKTKGKPGPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLYAT 68

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           +NA  RL  +  +    PV+   P+ +D++V K+AVHQG+ LE  PL +   + ++ ++L
Sbjct: 69  ENAKNRL-QERGVVIDVPVEDKRPKELDRMVTKDAVHQGMILEADPLPAYGAEHLKGARL 127

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V DPHN+GAILRSAVA   D ++TT+R++P E  VLAKSASGAL+ I ++R+ N
Sbjct: 128 ILALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKN 187

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +   + +M   GF  I L SD    LE     DK  L+LG+EGKG+R   +E    +A L
Sbjct: 188 MARFITEMKEQGFGCIALDSDGHASLEDTDFTDKTVLVLGSEGKGVRQGVREACGLLARL 247

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            MPG I++LNVSNAA ++LY+ + 
Sbjct: 248 DMPGEIRSLNVSNAAVLSLYVARQ 271


>gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 253

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 100/276 (36%), Gaps = 26/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K                        +H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+     +D  A  P    +  +     + +   E   QG+      
Sbjct: 42  LASRQTP-YDIYATEKY---VDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +    LL+  D + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 97  QAGQLPDPLSGQFLLL--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +    +        +         +D  K       + +  L++G EG G+
Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   +   +  ++ + G  ++LNV+ AAA+ ++  
Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
 gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
          Length = 273

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +R         LYG HTV+AAL NP R+I +L  T+NA  +L  D N+      + V P 
Sbjct: 30  ARERDPDGPAILYGWHTVTAALANPERRIRKLWLTENAARKLA-DENIDTKVTPEIVRPG 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ID+ +G +AVHQG+  E  PL SP +D +    +++VLD + DPHN+GAILRSA AF+ 
Sbjct: 89  EIDQRLGPDAVHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+TT R+SP  + VLAKSASGALE +P + + NL+ AL +++  GF T+GL S+    
Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSAD 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     ++ +AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALY
Sbjct: 209 LAAVELHEPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263


>gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L]
 gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus
           Q1]
 gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A1055]
 gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Kruger B]
 gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Vollum]
 gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Australia 94]
 gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI]
 gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Ames]
 gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC
           10987]
 gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Sterne]
 gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family
           [Bacillus cereus E33L]
 gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus Q1]
 gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus biovar anthracis str. CI]
 gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 247

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHFAK 282
               +
Sbjct: 240 RKRNE 244


>gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 249

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G++ V +++ N +  + ++L     KN+      +        V+ V  Q +D + G
Sbjct: 7   WIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A  L    D            LL+VLD V DPHN+GA LRSA A    
Sbjct: 67  GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I +K  S   +A + K++SGA + +P I + NL  +L+++        GL+ + +  L
Sbjct: 127 AVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+      
Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246

Query: 281 A 281
            
Sbjct: 247 T 247


>gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                     +  + G H    A
Sbjct: 1   MTIITSKANSVVKNTKKLHQKKYRKS---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + KI ++ A      +L         +P      + I   +      QG+      
Sbjct: 40  VQAGA-KIEKIFALVEYGDKLV-------DYPQTVFVAEEILLDLADSQTPQGIVAIVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEEQLPDLSQGKYLFL--EDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+   T   +   +         S + K   +  + +  AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRMPVETFVEEAKKNHLPILATTLSQNSKDYRELDRLEDFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   + A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 245


>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 102/294 (34%), Gaps = 33/294 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LIS   + ++  L+  H                    +R   +     L G H + A 
Sbjct: 1   MTLISSTANPRVSKLQRLHT-------------------TRGRKKSGQCLLEGPHLLLAL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP--------VKTVPPQTIDKIVGKEAVHQ 112
           L+     + ++      + R      L             +  V  + ++ I   +    
Sbjct: 42  LDAGMVPL-EVYYQPEVMQRQAETRLLLERVKNAELGEQQLFEVSERVMEAISDVQTSQG 100

Query: 113 GLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
            + +             R        L++LD + DP N+G I+R+A+A   + ++ T   
Sbjct: 101 IVCVMDLAAFEAAAVTRRRAPASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNC 160

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227
               ++ + +SA+GA   +P     N  +  +++ +   + +    + S           
Sbjct: 161 VDCFNSKVIRSAAGAHLFLPVESNINWDEIQERVRAHCQERVLMAEAHSPNVYFDLDLVA 220

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             ALI+G E  G     +  AT    +     I++LN + AA + LY      +
Sbjct: 221 PFALIIGNEAHGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQRS 274


>gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4]
 gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4]
          Length = 260

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 8/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    +    +  +  L G H   A L+  +     + AT+ ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGAIPELCV-ATEGALAHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       GL L       P    V ++ +++  D V 
Sbjct: 65  QAIVARIDAPRVVTLPDALFGQLSNVVSGVGLLLLVERPAQPLPARVTDTSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAERL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 183 DVPVALTDSHGAQAVYDCD---LSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYI-TQNHFAK 282
           LNV+ AAAV L+   +    K
Sbjct: 240 LNVAAAAAVCLFEQVRQQRRK 260


>gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 247

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 5/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              + E L ++G + V  AL +       L+A  +   +            V+ VP Q +
Sbjct: 2   KEEKGEKLVIWGRNPVIEALRSGKSLEKILVAHDSHPPKDLLKLAEERKVKVQKVPRQKV 61

Query: 102 DKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +++ G +     +     ++           ++   +L+VLDH+ DP N+G+I+R+A   
Sbjct: 62  EELAGTKKTQGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNVGSIMRTAEIL 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  S   + V+ K+++GA+ ++P  ++ +L     +        +       
Sbjct: 122 GVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSL-RNTLEKFKKKGGWVVAVEKGG 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K + +      +AL++G+EGKG+     E A  +A + M G I + NVSNA A+AL+   
Sbjct: 181 KNIHEIDFPFPLALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEVF 240

Query: 278 N 278
            
Sbjct: 241 K 241


>gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
 gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
          Length = 247

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHFAK 282
               +
Sbjct: 240 RKRNE 244


>gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
 gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
          Length = 333

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 14/267 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLD 82
               +  +    K    +   +  + G ++V  AL      +  +        +   R  
Sbjct: 68  RPSARAARGAEGKRGGRTSSTHEVVAGRNSVLEALRAGI-PVSTVYLAARLEADDRTREI 126

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135
                    P+  V    +D++    AVHQG+AL+  P      D         +   L+
Sbjct: 127 VSIAADAGHPLLEVGRAELDRLTD-GAVHQGVALQVPPYEYLDPDDLLDTAESSQTVPLV 185

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD + DP N+GA+LRSA AF   G++  +R +   +A   K ++GA   +P  R +NL
Sbjct: 186 VALDGITDPRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARATNL 245

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
           T ALQ     G   +GL +    PL       D + L++G+EGKGL    +E   ++  +
Sbjct: 246 TRALQDYRRAGVFVVGLDAGGDVPLADLPFAADPLVLVVGSEGKGLSRLVREQCDAIVSI 305

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            +   +++LN   AA +ALY      A
Sbjct: 306 PIASAVESLNAGVAAGIALYEVARQRA 332


>gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
           2228]
          Length = 269

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 24/286 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+IS  +++KI  L   +                   +SR+  +     L G   + AA
Sbjct: 1   MNIISSSQNDKIKYLNKLY-------------------RSRNRRKEGVFILEGKRLIEAA 41

Query: 61  LN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L      +++F   A   + A     A L     +  +  + + +        QG+    
Sbjct: 42  LAGGADFKQVFLTPAFFKSAANEKLLAALKLEADLIYLEEKLLKE-TASTVNPQGILAVV 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              +    D    +  +++LD + DP N+G I+R+AVA   DGII  K      +  + +
Sbjct: 101 EESVFKGQDFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALKGSVDIYNQKVIR 160

Query: 179 SASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           S  G +  I   +  +  +     K  +   + +    ++++   +     K+ L++G E
Sbjct: 161 STMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEEYHFEHQYQSKLILMIGNE 220

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             GL P+    A +   + + G I++LN + AA+V  +       K
Sbjct: 221 ANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAFEILAQALK 266


>gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 253

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 26/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K                        +H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVK-------------------KHQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+  +              +     + +          QG+      
Sbjct: 42  LASGQTP-YDIYATEKYVDDRALKPFYDKMTQISESVSEHL----SDTETPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +    L++  D + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 97  QAGQLPDPLSGQFLML--DAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +    +        +         +D  K       + +  L++G EG G+
Sbjct: 155 QGSQFHVRIVSAKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGM 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   +   +  ++ + G  ++LNV+ AAA+ ++  
Sbjct: 215 DPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
 gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
          Length = 247

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8]
 gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 8/236 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           +YG   +  AL N                                      + +  + G 
Sbjct: 3   VYGRKILEEALRNNVPIKKVFFQKMKNPGSYFLSLVKEVEKRGIKYSFESEERLKNLSGT 62

Query: 108 EAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +  HQG+  +       +++ +   +   L+++LD + DPHN+GAI+R++V    +GII 
Sbjct: 63  KK-HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIII 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  S   +  + K ++G +       ++NL   ++++   G      S     P+ +E 
Sbjct: 122 PKDKSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVW-TYASDIDGTPIYEED 180

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                A + G EG+G+R   +E    +  + M   I +LNVS +  V L+      
Sbjct: 181 FTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236


>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
 gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
          Length = 324

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 12/250 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTV 96
           +++ + +N  +YG + V +AL +  R + +L        +            +   +  V
Sbjct: 59  KNSEEQDNDLIYGRYPVLSALES-HRNLNRLWITSRLRYDPRFHHLVLQAKDNGTVIDEV 117

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150
            P+ +D+I    A HQG+A + AP     L+         +  +++V D + DPHN+GAI
Sbjct: 118 DPKRLDQIT-NGANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAI 176

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G++  +R +   ++ + K A+GALE+    R+ NL+ AL+++   GF   
Sbjct: 177 IRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIY 236

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G ++   +PL          L++G+EG+GL   TQ++   +  + + G   +LN S A  
Sbjct: 237 GTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATG 296

Query: 271 VALYITQNHF 280
           +ALY      
Sbjct: 297 MALYEIYRQR 306


>gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 251

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  A     + + +L      K+            H   V  V    +D +  +
Sbjct: 6   IEGRNVVIEAFR-GGKTVDKLYLQDGLKDYTISTILREAKKHGTYVNFVSKDRLDTMS-E 63

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A     +++              + +LD + DPHN+GAI+R+A      
Sbjct: 64  TGKHQGVIAIVAAYEYASVEDILEKARQKNEPPFIFILDGIEDPHNLGAIIRTANLSGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A +A++++GA+ + P  +++N+   +Q++   G   +       + +
Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMQELKDAGMWFVCA-DMGGEKM 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG G+    ++    +A + M G I +LN S A  V  Y      
Sbjct: 183 YNIDLTGSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQR 242

Query: 281 A 281
            
Sbjct: 243 I 243


>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 251

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+E +                   K        +   Q     + G H V  A
Sbjct: 1   MKQIDSPKNELV-------------------KKWKKLHTKKGRDQSGQFLIEGYHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +    I  +L T++      W  +      V  V  + +  +   +            
Sbjct: 42  LKSTIT-IETILVTESVTLPTAWHVDER---DVILVSDRVMADLTETKTPQGIA---AIC 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           + + +DHV DP N+G ++R+  A     +I ++      ++ + +++
Sbjct: 95  HIPDEPSFQELEGMFLCIDHVQDPGNVGTMIRTCDAAGMSAVIVSEGSVDIYNSKVVRAS 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P I+        Q   +                  E    + AL++G EG+G+
Sbjct: 155 QGSIFHLPVIKGDLHGWVDQFKEAGIPVFGTALEGGSTYTAIE-PQARFALLVGNEGEGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+  + A    ++ + G  ++LNV+ A  + LY  +
Sbjct: 214 EPELLDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250


>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
 gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
          Length = 262

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 4/260 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           +  N+   K+     +K +H ++     + G+H V  AL + +          K   A L
Sbjct: 4   ISPNNARVKEWSQLLEK-KHRTRQHKYIVEGIHLVQEALRSNAAVESVAYDLDKGIPAEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDH 140
           +   +   P     V    I K    +      A+       +      +   L+MVLD 
Sbjct: 63  NGLDSADQPVEWIPVSAAVIAKCTDTKTPQSVFAIVRKEERSAFAALLEQPDALVMVLDG 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+RSA A    G+I     +   +    +S  G+L H+P I  S   + L 
Sbjct: 123 VQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLE-ELLP 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +  S G + +  S D+              L++G EG+G+   T         + M G  
Sbjct: 182 QAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESVFIPMQGQA 241

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + A+ V L+      
Sbjct: 242 ESLNAAMASTVLLFEAMRQR 261


>gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 248

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN   +   +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENARRKGIEVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A       +        +   LL+VLD V DPHN+GA LRSA A    
Sbjct: 67  SVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S   +A + K+++GA + +P + ++NL   L+++   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGEAETSL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +     +AL+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+      
Sbjct: 187 YAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLFEAVRQR 246


>gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
 gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
          Length = 260

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    +    +     L G H  SA L+  +     +  T+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPQQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALGHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P    V  + +++  D V 
Sbjct: 65  QAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPARVTETSVVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +  +   ++
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVDAGELSGRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T    + +    +    +  +A + G EG G+     + AT    +  PG +++
Sbjct: 183 AVPIALTDSHGAQAVYDCD---LSAPVAWVFGNEGAGVSAFWCDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQVRQ 256


>gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
          Length = 249

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G++ V +++ N +  + ++L     KN+      +        V+ V  Q +D + G
Sbjct: 7   WIVGINAVVSSIENDAEHVREVLLEAASKNSRLLDIEENARRKGIEVRRVTTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   A   A  L    D            LL+VLD V DPHN+GA LRSA A    
Sbjct: 67  GVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ + +  L
Sbjct: 127 AVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+      
Sbjct: 187 YALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246

Query: 281 A 281
            
Sbjct: 247 T 247


>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 313

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 17/280 (6%)

Query: 18  SHYAKLRRNHRDYK-KMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNP---SRKIFQ 70
           +   K  + +R    + +   ++     +        + G + V  AL      +    Q
Sbjct: 35  AEMRKGHKKNRLATSRAKQATRRPAPRGRGGRSTSELVVGRNPVVEALREGVPANTLYVQ 94

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 95  QFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 VSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  +      +  + +++G+EGKGL 
Sbjct: 214 TAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY T    A
Sbjct: 274 RLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313


>gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
          Length = 261

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +  +L   D V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 263

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 102/237 (43%), Positives = 133/237 (56%), Gaps = 5/237 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKI 104
              +LYG H V AAL NP+RK+ QLL T  A   L     L   FP++ V      +D +
Sbjct: 29  GTCWLYGQHAVQAALENPARKLRQLLVTAEAQETLAS--RLEGGFPIQPVRTERAALDTL 86

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            G +AVHQG+AL    L  P LD V      ++VLD V DP NIGAILRSA AF    ++
Sbjct: 87  CGPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVV 146

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R +P E+  LA++ASGALE +P IR+ NL+  L  + S G   +GL +         
Sbjct: 147 MQDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDALKSRGLWVVGLDAGGGVLDGAA 206

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++AL+LGAEG GLR  T+E    +A L M   +++LNVSNAAAVALY    H 
Sbjct: 207 FHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYEMFRHR 263


>gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
          Length = 290

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 23/281 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++++I  +                      + +R   +   +   GV  V  A
Sbjct: 18  MEKIESAQNKRIKWIASL-------------------KNARRRREEGVVVAEGVRLVEMA 58

Query: 61  LNNPSRKIFQLL-ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
                   F L+ A      R +           P+  V P+   K    +A    L + 
Sbjct: 59  AEAGWTTRFCLVTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDAPQGILLVL 118

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                S    A+R    ++VLD V DP N G I+R+A A   D ++         SA   
Sbjct: 119 EERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAV 178

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
           +++ G++ H+P +R  + T   + +     + +    D   +P      + ++AL  G E
Sbjct: 179 RASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G G+  + +  A +   + M G  ++LNV+ AAA+ LY   
Sbjct: 239 GNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAA 279


>gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 273

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 23/281 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++++I  +                      + +R   +   +   GV  V  A
Sbjct: 1   MEKIESAQNKRIKWIASL-------------------KNARRRREEGVVVAEGVRLVEMA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
                   F L+  + A                 P+  V P+   K    +A    L + 
Sbjct: 42  AEAGWTTRFCLVTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDAPQGILLVL 101

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                S    A+R    ++VLD V DP N G I+R+A A   D ++         SA   
Sbjct: 102 EERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAV 161

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
           +++ G++ H+P +R  + T   + +     + +    D   +P      + ++AL  G E
Sbjct: 162 RASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNE 221

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G G+  + +  A +   + M G  ++LNV+ AAA+ LY   
Sbjct: 222 GNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAA 262


>gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ +   +YGVH V+   L N   K++     +        D        +    
Sbjct: 2   KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG  L  +      LD         ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                    +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 239 LMYEVFRN 246


>gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118]
          Length = 256

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 105/249 (42%), Gaps = 18/249 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   D        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYFEPTRRDARMRQFLDKANEAGARLIEADGIRLAKLCG 65

Query: 107 KEAVHQGLALETAPLLSPTLD---------------AVRNSQLLMVLDHVNDPHNIGAIL 151
                   A         +LD                 R   L++VLD V DPHN+GA L
Sbjct: 66  GHGHQGVAARVHELAQVKSLDELLEQLEAAQTDRPPTEREEALILVLDGVTDPHNLGACL 125

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A       +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG
Sbjct: 126 RVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWIIG 185

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S  + K + Q      +AL+LGAEG G+R  T +T   +  + M G +++LNVS A+ V
Sbjct: 186 TSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCDELVSIPMRGAVESLNVSVASGV 245

Query: 272 ALYITQNHF 280
            LY      
Sbjct: 246 CLYEALRQR 254


>gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
 gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
 gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 11/241 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106
             +YG + V   L +       LL  +    R             P + V    +D++  
Sbjct: 4   EIVYGRNAVWELLQSGKPVNKLLLQGEGTAGRFQDIVSHARAQKIPFQFVDKAALDRLT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           ++A HQG+    AP     +D +            ++VLD V DPHN+GA++R+A A   
Sbjct: 63  EKAKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVEDPHNLGALIRTADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  KR S S +A +AK+++GA+EH+   R+ NL   L+ +   G    G  ++  + 
Sbjct: 123 HGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAEGTEV 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +       +++G+EGKGL    +ET   +  L M G I +LN S A ++ +Y     
Sbjct: 183 YRSD-LTGARVIVIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQ 241

Query: 280 F 280
            
Sbjct: 242 R 242


>gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 258

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + S    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHEDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        V  + + + +                 + +        L++  +++ D
Sbjct: 67  KEIIELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYNVDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFP 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      + A     +  PG  ++L
Sbjct: 185 IPVFVTSSHHSTSLYSQD---LSKPCVWILGNEGQGASDYALDHA-QCVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
 gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 10/258 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH 89
           K    N      ++ E   + G + V  AL      I  +     A     L        
Sbjct: 2   KENKINNNKTTDNKREEELILGRNPVIEALKADK-LIDMIFVNPEAKGSISLILKLAKER 60

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVND 143
             PVK V    +D + G  A    +A+          D             +++ D + D
Sbjct: 61  DIPVKQVREIKLDSMAGGAAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIED 120

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R+ NL  A     
Sbjct: 121 PHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNL-AAAVDDL 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 I  +  + +          I L++G+EG G+    +E    +  L M G I +L
Sbjct: 180 KKQGIWIYGTDGAGQNYSGADLRGPIGLVVGSEGFGMGRLMKEKCDMLLSLPMAGKITSL 239

Query: 264 NVSNAAAVALYITQNHFA 281
           N S AA + +Y       
Sbjct: 240 NASVAAGIFMYEIVRQRN 257


>gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFYEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGI+ ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ ++   + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
 gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
          Length = 268

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQ------- 99
           +L G H V AAL +   ++  ++  +    +               ++  P +       
Sbjct: 12  WLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPEKVFADRVR 71

Query: 100 ---TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + +  G  A +Q         L   LD +     L++LD V DPHN+GA LRSA A
Sbjct: 72  ADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLGACLRSAEA 131

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I+ K  +   +    K+ASGA E +P+I+++NL   L  + S     +G +   
Sbjct: 132 AGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIWIVGAAGGG 191

Query: 217 KKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              L +     + +AL++G+EG+GLR  TQE    +  + M   +++LNVS AAAV L+ 
Sbjct: 192 MVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLFE 251

Query: 276 TQN 278
            + 
Sbjct: 252 FRR 254


>gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 253

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+ +  N K +   +     L G+H V  AL    +    L+ +K        + 
Sbjct: 7   SNSRVKEWKKLNTK-KGRKRQNKYILDGLHLVKEALKANKKVEELLITSK---FEHLNEI 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +P    V  +  +    I   +   QG+    +          ++    ++LD V DP 
Sbjct: 63  EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I  +            
Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKDMK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   ++  +      ++   AL++G EG G+  +  E  +   ++ +    ++LNV
Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240

Query: 266 SNAAAVALYITQN 278
           + AA + ++  + 
Sbjct: 241 AVAAGILMFALKK 253


>gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 122/248 (49%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ +   +YGVH V+   L N   K++              D        +    
Sbjct: 2   KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLCGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG AL  +      LD         ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                    +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 239 LMYEVFRN 246


>gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 107/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------TYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A  P       V  + +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALESYRDQL---AAFPQTV---WVSEEVLLDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S  +   +   S         S   K   +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSLASFVEEAKKSNLPILATTLSKDSKDYHELSPIENFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ AL      + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEAL--NGDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L         +    +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   + +  K+++GAL+H+P +R++NL+  L K+ S GF   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   K  KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 TVYSKWNTK-GKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
 gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
          Length = 259

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 12/240 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ ++  L   +  + R                + V  + +D +V   
Sbjct: 16  YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 74

Query: 109 AVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+    +   +         L+ +    LL++LD V DPHN+GA LR+A A    G
Sbjct: 75  ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           ++T K  +   +AV  K ASGA E IP +R++NL   ++ +   G   +G          
Sbjct: 135 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 194

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  Q   
Sbjct: 195 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 254


>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
 gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
          Length = 265

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G   +S A+         L    + +   +   
Sbjct: 8   HNSYIKELLKLQEKSRERKKKGLFIIEGKREISLAVAANYNFDTVLYV-DDLICEKEVLH 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                     +  +   K+  + +        +        +  V  + L++V + +  P
Sbjct: 67  LFNENVNRIQISKEIYQKLAYRASTEGVIAVTKAKDFSLEHIKFVTKNPLILVAEGIEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A +   +                 AS        I +    + +  +  
Sbjct: 127 GNIGALLRTADAANVAAVFI-ANPKSDLYNPNIIRASIGCVFTTQIAVGTSEEIISYLTE 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +    +  +     +E   +  A+ +G E  GL    +E AT   ++ M G I ++N
Sbjct: 186 NNIRLYATTLQNSNEYHKENYTEASAIAVGTEDTGLTAVFRERATQNINIPMQGEIDSMN 245

Query: 265 VSNAAAVALYITQNHF 280
           VS AAA+ L+  +   
Sbjct: 246 VSVAAAIVLFEAKRQR 261


>gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 9/260 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWD 84
             K  +    ++   ++       G   V  AL +        + ++ AT  A  + D  
Sbjct: 14  RVKHARRLATRA-FRAEQREFLAEGPQAVREALAHGGADHRGTVIEVFATSEATDQHDDL 72

Query: 85  ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                   V    V P  +D +    A    +A              R+   L+V   + 
Sbjct: 73  VTAARRDEVVWHVVAPDVLDALTDTVAPQGVVARCAMVDRPLKALLDRSPTFLVVCADIR 132

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N GA++R A A   DG++ T       +    ++  G+L H+P +   ++   L  +
Sbjct: 133 DPGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLFHLPLVIDRDVEGTLAAL 192

Query: 203 HSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            S G Q      + D              A ++G E  GL   T+  A  +  + + G  
Sbjct: 193 QSAGLQVLAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRA 252

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN++ AAAV LY T    
Sbjct: 253 ESLNLATAAAVCLYTTARSR 272


>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7425]
          Length = 387

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95
           ++ ++  ++  +YG HT+ AAL +  R++ ++        +                +  
Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVNQLRYDPRFHSLLLQAKAAGVVIDE 176

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGA 149
           V    +D+I      HQG+A + AP     LD         +  +L+  D + DPHN+GA
Sbjct: 177 VDYLRLDQITAHAK-HQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHNLGA 235

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G++  +R +   ++ +AK A+GALEH    R+ NL  AL+++ + GF  
Sbjct: 236 IIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAGFWI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G+++ + KP+     +  + L++GAEG GL    Q     +  + + G   +LN S A 
Sbjct: 296 YGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNASVAT 355

Query: 270 AVALYITQNHFA 281
            +ALY      +
Sbjct: 356 GMALYEIFRQRS 367


>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 261

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADDILTLID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +  +L   D V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I +    +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LLDIYLQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 254

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LL T+N     + +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  NKILNDVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ IP I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 275

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 121/274 (44%), Gaps = 15/274 (5%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF----LYGVHTVSAALNNPSRKIFQLLAT 74
              K R+  R        + +     +   L     ++G H V  AL        +L   
Sbjct: 2   REKKQRKPSRQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRG--NKLFMA 59

Query: 75  KNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---- 127
           ++A         +A      PVK VP Q +D++   + VHQ + L   P    +LD    
Sbjct: 60  EDARGEKIDGLKEAARAQSVPVKWVPKQKLDQMS-NQGVHQSVILAITPYEYLSLDELLA 118

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +     ++LD++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EHI
Sbjct: 119 QTKEQSFYLILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHI 178

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R++NL+ A+Q++   GF   G                   LI+G EG+G+    ++ 
Sbjct: 179 PIARVTNLSQAIQQLKQAGFWIFGTDMKGTDYRLWN-AQGAAGLIIGNEGRGMSEGLKKD 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              M  + M G +++LN S AA + +Y       
Sbjct: 238 VDEMLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 271


>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 255

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   +  R   +     L GVH V  A       +  L+  ++A A  + 
Sbjct: 6   SRDNAFFKQLKRLAESGRERRKTGQTLLDGVHLV-EAYEKAFGPLENLIVAESAAAGGEI 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A L     V  V    + + +G      GL           L  +    +L+  D V D
Sbjct: 65  AAYLEGRQAV--VLADALMRDLGLVDTPSGLLAVAPMPQRTALVDLGKDAVLL--DGVQD 120

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A A     ++     + + S  + ++  GA   +     ++L   +    
Sbjct: 121 PGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGAHFVLAIHEEADLAAFMADYR 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                      D    L +      +A I GAEG G+R +  ETA     + MPG +++L
Sbjct: 181 GTT---AVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVESL 237

Query: 264 NVSNAAAVALYITQNH 279
           NV  AAAV L+     
Sbjct: 238 NVGAAAAVCLFEALRR 253


>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 247

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYISKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      +D         +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVAVGAVYKYFDVDNLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  E+   +  +A+++G+EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239

Query: 277 QNHFA 281
            +   
Sbjct: 240 VSKRK 244


>gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 247

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++   K     RL    N        ++    + +D  
Sbjct: 3   NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERLLPILNELQMLGVTMQQAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V   A HQG+     P      +        + + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  V-HGANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSK 217
              II  K  S   +A  +K A GA E +P +R++NL   ++          +G + ++ 
Sbjct: 122 AVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIWIVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A+ + L+   
Sbjct: 182 HDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 241

Query: 278 NHFAK 282
               +
Sbjct: 242 RQRIE 246


>gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
              +YGVH V+   L N   K++     +        D        +     + + ++  
Sbjct: 10  KDIVYGVHAVTESLLANTGNKLYIQEDLRGKNVDHIKDLATSKKVSISWTKKKALSEMTA 69

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LD          + LL++LD + DPHN G+ILR+A A    
Sbjct: 70  -GAVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G         
Sbjct: 129 GVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTGTPSY 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    +
Sbjct: 189 KWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246


>gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
          Length = 290

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 98/245 (40%), Positives = 144/245 (58%), Gaps = 7/245 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + +
Sbjct: 43  KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVI 101

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG ALE  PL    LD          +++LD V DPHN+GAILRS
Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221

Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E      K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281

Query: 271 VALYI 275
           +ALY 
Sbjct: 282 IALYA 286


>gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
 gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
          Length = 290

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 98/245 (40%), Positives = 144/245 (58%), Gaps = 7/245 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + +
Sbjct: 43  KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVI 101

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG ALE  PL    LD          +++LD V DPHN+GAILRS
Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221

Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E      K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281

Query: 271 VALYI 275
           +ALY 
Sbjct: 282 IALYA 286


>gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 260

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 7/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +++G H +++ L      I ++      ++  AR   +        +       + K+ G
Sbjct: 6   YIFGFHAITSRLRQHPDSIKEIYLDTNRQDQRARDLMNLAETTSSRLILCNQDRLCKMTG 65

Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                   A          L    D +     L+VLD V DPHN+GA LR A AF    +
Sbjct: 66  TTRHQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+ 
Sbjct: 126 IVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLDS 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 IA +LGAEG+G+R  T+ET   +  + M G I++LNVS +A + L+ T   
Sbjct: 186 ITLTRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQ 242


>gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 237

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFFEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGI+ ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ ++   + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 261

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI         L L   
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISSLSCADDILTLIDI 102

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    LD         VLD V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 103 PLGGTLLDKGD----CAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 330

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 25/286 (8%)

Query: 20  YAKLRRNHRDYKKMQSFNQKS-----------RHTSQPENLFLYGVHTVSAALNNPSRKI 68
           + K R  +   K+ +    ++                     + G ++V  AL       
Sbjct: 46  HPKQRAANAALKRERDAKSRAGMRRSGAGSRSGRGGAGAAELVVGRNSVVEALQ-GGVPA 104

Query: 69  FQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             L   +    +   R  + A      P+   P   +D++ G    HQGL L+  P    
Sbjct: 105 TALYVQQFLDTDDRVRDAFQAANERGVPLMEAPRAQLDQMTGGL-NHQGLVLQVPPYEYA 163

Query: 125 TLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             D             L++ LD V D  N+GA++RSA AF   G++  +R +   +A   
Sbjct: 164 HPDDLLEGAADAGQDALIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAGAW 223

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAE 236
           K++SGA   +P  R +NLT AL+     G   +GL++D +  +      N  + ++ G+E
Sbjct: 224 KTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGEAEIGDLDALNGPVVIVAGSE 283

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKGL     ET   +  + MPG  ++LN   AA + LY      AK
Sbjct: 284 GKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLRAK 329


>gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 247

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G +     +A+          D        +    L++LD + DPHN+GAI+RSA AF
Sbjct: 61  LAGSQNHQGVVAVGAVYKYFEVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++ 
Sbjct: 121 GVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNAG 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  E+   +  +A+++G+EGKG+     +    +  + M G I +LN S AA++ +Y   
Sbjct: 181 KSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVV 240

Query: 278 NHFA 281
           +   
Sbjct: 241 SKRK 244


>gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 246

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
           13032]
 gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
           glutamicum ATCC 13032]
          Length = 313

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 14/273 (5%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
            A+ R  H  +K+    +++ R   Q E    + G + V   L+        L   + A 
Sbjct: 39  KAEDRTYHAAHKRKVERDRRDRGRHQREMPELVVGRNPVLECLHA-RVPATALYVAEGAA 97

Query: 79  ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128
                   +        PV  V    +D++ G   +HQG+ L   P     +        
Sbjct: 98  NDERLSEAVHTAAGRNLPVLEVNKLELDRMTG-NGMHQGIGLAIPPYEYADVHDLIANAA 156

Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   + ++LD++ DP N+GA++RS  AF  +G+I  +R S S +AV  ++++G    +
Sbjct: 157 ASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARV 216

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  + +N+T  +++    G+Q +GL +     L+     D + +++G+EGKG+    +E 
Sbjct: 217 PVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVREN 276

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  +   G +++LN S AA V L       
Sbjct: 277 CDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309


>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
 gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
          Length = 252

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 13/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
              LYG + V  +L    R   +L       ++ +     +       PV+ +  QT+D+
Sbjct: 3   TELLYGRNAVRESLRARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + ++A HQG+ LE  P     LD         R + LL++LDH+ DP NIG +LR+A A
Sbjct: 63  RL-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215
             C G++   R +   +  +  ++SGA+EH+    ++NL   +++  H+  +       +
Sbjct: 122 VGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + ++    +  +AL++GAEG G+    +E    +  L + G + +LN + A ++A+Y 
Sbjct: 182 QAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIYH 241

Query: 276 TQNHFAK 282
                 +
Sbjct: 242 AWRQRHR 248


>gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
 gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
          Length = 239

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 5/235 (2%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
              +YG ++V  AL +  P  KI+       +               P+K V    I+K+
Sbjct: 2   EDIIYGKNSVLEALKSEIPLNKIYIARGIHFDNKFNEILKLAKEKSIPIKYVERSFIEKM 61

Query: 105 VGKEAVHQ-GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           V   +     +           L+    N  +++VLDH+ DP+N+GAI R++       I
Sbjct: 62  VDGNSQGVLAILSSVPYKDWKELEKSLDNKSIIVVLDHIQDPYNLGAIARTSEFAGVSAI 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   ++V  K+++GAL +IP IR+SN+ + L+++   G+  +G   +++    +
Sbjct: 122 VIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELKGKGWFIVGADLNTENLYNK 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              N  +AL++G+EG+GL    +E+   +  +   G +++LNVS A  + LY  +
Sbjct: 182 VEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIR 236


>gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas
           ingrahamii 37]
 gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas
           ingrahamii 37]
          Length = 246

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            ++  LYG+H+V A L     +  ++ A K     RL+      +     V+ +  + +D
Sbjct: 2   SKSELLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWGISVQLMNRKAMD 61

Query: 103 KIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                    G  A  +   +     L   L+++     L++LD V DPHN+GA LRSA A
Sbjct: 62  DKSEGEQHQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S S + V+ K A GA E +P I ++NL  A++ +   G    G + ++
Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + L        +AL +GAEGKGLR  T+E    +  L M G + +LNVS A  V L+  
Sbjct: 182 TQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEV 241

Query: 277 QNHF 280
               
Sbjct: 242 VRQR 245


>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 12/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                   +   ++S    +       G   V  A    +  + ++ AT++A  R     
Sbjct: 37  RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AGHLVEVYATEDAARRHPELL 91

Query: 86  --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV +   + +  +         + L             R  +L+ VL HV D
Sbjct: 92  DDARARGVPVLSASEEVLAAMADTVTPQGVVGLCRFLDTGFADVLARRPRLVAVLAHVRD 151

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D +I T       +    +++ G+L H+P +    + +A+  + 
Sbjct: 152 PGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVPVEEAVAGLR 211

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +         L+ E          A + G E  GL  +T+  A ++  + + G 
Sbjct: 212 GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGK 271

Query: 260 IKALNVSNAAAVALYITQN-HFAK 282
            ++LN++ AAAV LY +      +
Sbjct: 272 AESLNLATAAAVCLYASARAQRGR 295


>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 322

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQ------KSRHTSQPENLFLYGVHTVSAALNNP-SRKIF 69
            +        HR  K      +      +          ++ G + V   L         
Sbjct: 40  KAEDRTYHPAHRRAKAASRKAEGAQQRRRQAQKQADGPEYVVGRNPVLECLRAGVPATAL 99

Query: 70  QLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL- 126
            +    +A  RL    +L       +  VP   +D++V    +HQG+ L+  P       
Sbjct: 100 YVAIGSDADERLTEAVHLAAGKGISILEVPRTDLDRMVS-NGMHQGVGLQVPPYQYTDPA 158

Query: 127 ------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        LL+ LD++ D  N+GA++RS  AF   G++  +R S S +AV  +++
Sbjct: 159 DLLDMAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTS 218

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GA   +P  R +NL   L      G Q +GL ++    L+         +++G+EGKGL
Sbjct: 219 AGAAARLPVARATNLNRTLLDWAKAGVQLVGLDAEGDVSLDDYDGTGPTVIVVGSEGKGL 278

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +E   S+  + +   +++LN S AA V L       
Sbjct: 279 SRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQR 318


>gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi
           ATCC 51908]
 gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC
           51908]
          Length = 245

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +    +G+H V A L +   ++ ++        +           +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLASLLQMAAEYGISVQKAARKVLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                   HQG+      +         +L     +   ++LD V DPHN+GA LR+A A
Sbjct: 62  DKSD-SGQHQGVLARVKAVKQLNDNDLLSLVEKTETPFFLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQEKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L +      +A+ +GAE KGLR  T+E+  S+A + M G + +LNVS A  + L+  
Sbjct: 181 DSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 272

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 125/269 (46%), Positives = 168/269 (62%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           K+ HYA L+   RD K    +  +  ++     +   + LYG HTV+AAL NP R    L
Sbjct: 3   KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQGTIRLYGFHTVNAALKNPKRVFGHL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             T NAL RL+   +   P  V    P+ +D +VG +AVHQG+ LET  L    L  + N
Sbjct: 63  YITLNALKRLNIPKSDL-PCSVTLYSPKQLDSLVGSDAVHQGIILETESLKPCQLSELTN 121

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V+D + DPHN+GAI+RSA+AF    +ITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 122 TDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEIINYIT 181

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL + LQ++H  GF + GL S+    LE  +   KIAL+LGAEGKGLR KT+ET  ++
Sbjct: 182 VRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRETVCAL 241

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 242 TRLDMPGNIKSLNVSNAATIALYVAHKYL 270


>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
 gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
          Length = 265

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 105/262 (40%), Gaps = 7/262 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79
            +++   K  ++   KS++ ++     + G   V  AL          I +    K    
Sbjct: 7   SKDNEKLKYTKALL-KSKNRNKESKFIIEGYRIVVLALECMANLDYVFINEDFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +L  D +      +     +   ++V  E     + + +      +    +  + +++LD
Sbjct: 66  KLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKFVLILD 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A +   + II  K      +  + +S  G++     I  ++  + +
Sbjct: 125 RIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIF-DMNIINASQDETV 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + S  F  +    ++    ++     K+AL++G E  G+  +    +  +  + + G 
Sbjct: 184 DMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGK 243

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN + ++A+ +Y  +    
Sbjct: 244 AESLNAAISSAILMYEIKKSLI 265


>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 260

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++    +    +     L GVH   A +    + +  L++ ++       
Sbjct: 6   SRDNALFKHLKALAGSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCLVSERHYDHAEVA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +   +        L L            +    +++  D V D
Sbjct: 66  PLLAEVDSERVVVLADALFTQISGVVNGIDLMLVIETPAGHLPARIEQDCIIL--DGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA A            + + S    ++  GA  H+  +    L        
Sbjct: 124 AGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTL---EALAP 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS ++  +        +A ++G EG G+        T    +  PG +++L
Sbjct: 181 RLAIPLLATSSHAEAAVFDTDLRGPVAWVVGNEGAGVSEGWMAHVTRKVGIPQPGGMESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A A+ L+      
Sbjct: 241 NVAAATAICLFEAVRQR 257


>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 315

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 21  AKLRRNHRDYKKM---QSFNQKSRHTSQPENL--FLYGVHTVSAALNNP-SRKIFQLLAT 74
           A+ R  H   K+    +      +   +  +    + G + V   L          +   
Sbjct: 41  AEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVG 100

Query: 75  KNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128
            +   RL     L       +  VP   +D++     +HQGLAL+  P      D     
Sbjct: 101 ADNDERLTESVALAADAGIAILEVPRPDLDRMST-NGLHQGLALQIPPYKYAHPDDLLAR 159

Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA  
Sbjct: 160 ARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAA 219

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  R +NLT  L+     G   +GL +     L+       IA+++G+EGKGL    +
Sbjct: 220 RLPVARATNLTRTLKDWQDKGITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVR 279

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +T  ++  + M G +++LN S AA V L       
Sbjct: 280 KTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314


>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
 gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
          Length = 285

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---- 82
           +   K +++  QK +H  +  +    G+  V  AL+    KI  L+  K A  +      
Sbjct: 24  NPIVKDIRALAQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVGQV 81

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +     V  V  + I  I  ++     + +                +  + LD V 
Sbjct: 82  AAKAVARGGLVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEGETYVALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  +P  R S       + 
Sbjct: 142 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVARASAEDFLRWQR 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         S S      + ++  + L++G E  GL  +    A ++A +   G   +
Sbjct: 202 SAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAELAREAGALARIPQAGRADS 261

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A  + L+  + H 
Sbjct: 262 LNLAIATGIMLFEARRHL 279


>gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 246

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 285

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 87/255 (34%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +   Q       G+  V  AL+   +    + A             
Sbjct: 20  NPLVKDIKALAQK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNAAVEKVA 78

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 79  ARTVAAGGMVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVRADNGDVWVALDRVRD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    G+I     +   S    ++  G++  +P  + +       +  
Sbjct: 139 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKATTEAFLAWRGG 198

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +      +     + L++G E +GL      +   +  +   G   +L
Sbjct: 199 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 258

Query: 264 NVSNAAAVALYITQN 278
           N++ A  + L+  + 
Sbjct: 259 NLAVATGIMLFEIRR 273


>gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240149]
          Length = 261

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            V +V    + KI         +    
Sbjct: 43  LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L A  +    +VLD V DP N+G +LRSA A     ++  +  + + S  + +
Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA         ++L   L +     F T             E      A + G EG 
Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 267

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 8/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DAN 86
             K +++ +++S   S+       G   V  A+     ++  +  T     R     DA 
Sbjct: 9   RVKSVRALSRRS-VRSRTGQFLAEGPQAVREAVRCAPEQVRDIYVTAEGADRHPEIVDAA 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDP 144
           L     V    P+ + ++   E     +A+      + +  L A+    ++ VL +V DP
Sbjct: 68  LAAHLFVHEASPEVLHEMCDAEHPQGIVAVCRWAEPTLSAALGALPRDAVVCVLTNVRDP 127

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ++R A A   D ++ +       S  + +S  G+L H+P +    +   L  + +
Sbjct: 128 GNAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRSTVGSLWHLPIVTGVPVPVILDALRA 187

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +         L +       A ++G E  GL  + ++    +  + + G  ++LN
Sbjct: 188 RGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAESLN 247

Query: 265 VSNAAAVALY---ITQNHF 280
           ++ AA + LY    ++   
Sbjct: 248 LAMAAMLCLYASAESRVQR 266


>gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
 gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
          Length = 279

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 103/273 (37%), Gaps = 23/273 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ +   K++   +       G+            ++  L  T++    +  + 
Sbjct: 6   SNKQVKRVVNLRAKAKARREENCYVAEGLRMCREL---SPDQVEMLYVTED-FGSVPGNR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------------ 127
                FP +TV    ++ +       QG+            +                  
Sbjct: 62  RWLAGFPHETVSDVVMNYMAD-TKTPQGVLAVVKQRHYRLEELLPQAGKQIPKTSVPVGK 120

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                  LM+L+ + DP N+G ILR+       G++  +  +   +  + +S  G++  +
Sbjct: 121 NPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRV 180

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++ + +L+ AL ++ S G +            +QE     I  ++G E  GL  +T   
Sbjct: 181 PFVYVDDLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAM 240

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G +++LN + A++V ++      
Sbjct: 241 ADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273


>gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           amazonensis SB2B]
 gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B]
          Length = 240

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +G+H V + L +   ++ +L               +         +    +T+D+   + 
Sbjct: 2   FGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDEKA-ES 60

Query: 109 AVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+ +   P           L     +  L++LD V DPHN+GA LR+A A    G+
Sbjct: 61  TQHQGIIIRVRPAKVLTENDLEALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHGV 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  ++K A GA E +P  +++NL   ++++   G    G + ++   L +
Sbjct: 121 IVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTLYE 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+      
Sbjct: 181 ANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQR 238


>gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
 gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
          Length = 276

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 14/257 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKT 95
            +  +  + +   +YG +TV+  L +  RK+F+++         R           P K 
Sbjct: 18  SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76

Query: 96  VPPQTIDKIV----GKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDP 144
           +P Q  +++          HQG+     P     L               +++LD + DP
Sbjct: 77  LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILR+A A   DGI+  K  S   ++ +AK ++GA+EHIP   ++NLT A+ ++  
Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G  +   +          + L++G+EGKG+    +E      +L M G + +LN
Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256

Query: 265 VSNAAAVALYITQNHFA 281
            S AAA+ +Y   N   
Sbjct: 257 ASVAAALLMYEIYNKRN 273


>gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 277

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           V  AL+     +  LL  K+             
Sbjct: 18  YARLTEGQLLNRHEPEKGLFIAESPKVVERALDAGCIPVSLLLERKHIEGEARDVLARCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P L    +    ++ + VL++V +P N+GA
Sbjct: 78  DVPVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T   S        + + G +  IP+  ++         +    ++
Sbjct: 138 IFRSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKS 197

Query: 210 IGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +           S      ++    +K+A+ILG+EG GL   T         + M   + 
Sbjct: 198 LCFGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWELCR 274


>gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 256

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S+K+S            K+       +    +    FL G H V  AL     + +
Sbjct: 3   EKISSVKNSK----------VKEWVKLKTNN-GRKKYRRFFLEGRHPVETALV--EERQY 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDA 128
           + L  +        +AN+     +  V  +    I           +      +    + 
Sbjct: 50  EYLIVEEGFDLASLEANVDED-KLIVVTKEVSKHIADTVHEQGIFLIGYVEDAVYEMPND 108

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL+  D+V DP NIG ++R+A A    G+I     +   +  + ++  G+  H+ 
Sbjct: 109 TTGQWLLL--DNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQYHLQ 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++          +       +  +  +           +LI+G EG G+ P+  +  
Sbjct: 167 LKRLNLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNGMSPELVKAT 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
               ++ + G  ++LNV+ AA V ++
Sbjct: 227 DCNLYIPIKGNAESLNVAVAAGVLMF 252


>gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQTDLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 320

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 24/287 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  KL R  RD         + RH        + G + V   L+  
Sbjct: 37  TPKAEDRVYHA--AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHA- 84

Query: 65  SRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +                    P+  VP   +D + G   +HQG+ L+  P
Sbjct: 85  RVPATALYIAQGTRNDDRLTEAVQLAHSRSIPLIEVPRIELDSMTG-NGLHQGVGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +          +   +++VLD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 144 FEYADVFDLIGTVADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T  L++    G+Q +GL +      +       + +++
Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVV 263

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKGL    +ET   +  +     +++LN S AA V L       
Sbjct: 264 GSEGKGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQR 310


>gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 248

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +N  + G + V  AL +     K+      + +  +            V+ VP   +D++
Sbjct: 2   DNEVIMGRNPVMEALKSGRSVNKVMVTEQIQGSTFQKINQLAREAGTIVQKVPRSKLDQM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A     +LD               ++LD + DPHN+G+ILRSA A 
Sbjct: 62  --ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPHNLGSILRSADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +A +AK+A+GA+EHIP +R++N+++ + ++       +G  +++ 
Sbjct: 120 GVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKERNVWIVGTEAEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q   +  I +++G EGKG+    ++       L M G + +LN S A  + LY   
Sbjct: 180 QDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39]
 gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39]
 gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6]
 gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6]
          Length = 252

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 46  VQAGVT-IEKIFALENYRDQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 156 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 216 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251


>gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
 gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
          Length = 248

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V   +    + + +++     ++A  +            +       + K+ G
Sbjct: 6   VIFGFHAVGVRIKTAPKSVLEVMFDTSRRDARMKQFIARAQEAGVRLVEADGLRLAKLSG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
                  +A         +LD +           LL+VLD V DPHN+GA LR A     
Sbjct: 66  SHGHQGVVARVEPIAQVRSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       +G S D+   
Sbjct: 126 HAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERSIWCVGTSDDAPGT 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL+LGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY     
Sbjct: 186 LYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQ 245

Query: 280 FA 281
            +
Sbjct: 246 RS 247


>gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++GV+ V A L +  R +  L   K    +   +          P++      +D++   
Sbjct: 7   IHGVNPVQALLESG-RPVSSLWVLKGRHGKRVEEMIEGFRARGVPIQFCERTAMDRMAD- 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQG+    AP  + + D            LL++LD V DPHN+GAI+RSA AF    
Sbjct: 65  GGAHQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220
           +I  K  +   +A   K+++GA E +  IR++NL  A+++      +            +
Sbjct: 125 VILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIEQLQQRNVWVIGLAGEAGAPLI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL++G EG GLR  T+E    +A + M G + +LNVS A  VALY      
Sbjct: 185 GTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244

Query: 281 A 281
           A
Sbjct: 245 A 245


>gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALESYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSSQALLEEAKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU144]
 gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU045]
 gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU028]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGLALVEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I   +   + ++    D        V  +  +  + + G        A+   P
Sbjct: 42  YQSQIEVIQLFIVDTDRMSSSIIDYAK----EVYQINLKVAEALSGTVTPQGFFAIIKKP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               TL        ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 98  TYDKTLAKQ-----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I         Q         +  +        Q       ALILG EG+G+
Sbjct: 153 QGSIFHIPVIFDDINNYIHQFNGPVYGTALENAVSFNDIEAQANF----ALILGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +  T    + + G  ++LNV+ A ++ +Y  +
Sbjct: 209 NSDLLKETTQNLTIPIYGKAESLNVAIAGSILMYQLK 245


>gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+N+ S   K+F     +  L          +      VPP+ ++++   +
Sbjct: 8   IFGIRAIIEAINSGSTIDKVFIQKGLRGELFNELDHLLRSNAISTSFVPPEKLNRLT--K 65

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+    LD +  + +        ++LD ++D  N GAI+R+A     DG
Sbjct: 66  KNHQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTAECTGVDG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+     +A   K+++GA+  +P  ++ ++ DA+  + S G Q +  +  ++  L 
Sbjct: 126 IIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATEKTENTLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A+++G+EGKG+ P   +     A L M G I +LNVS A    LY      
Sbjct: 186 DVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLYEIVRQR 244


>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           extorquens PA1]
          Length = 268

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 108/247 (43%), Positives = 149/247 (60%), Gaps = 1/247 (0%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           + ++           +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P 
Sbjct: 17  RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             + V P  ID+++G +AVHQGL  E  PL +P  DA+ +  LL+ LD + DPHN+GAI+
Sbjct: 76  EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLALDQITDPHNVGAIV 135

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IG
Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L SD+   L+         L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+
Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255

Query: 272 ALYITQN 278
            LY    
Sbjct: 256 TLYALTR 262


>gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 247

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A              +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWVAEGAAKGQIQIVVALAKENKILLQYAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR S   +A +AK+++GA+E+IP +R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     +    + HL M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
 gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
          Length = 260

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    ++   +     L G+H  SA L+   +    +  T  AL+  + 
Sbjct: 6   SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPELCV-VTDGALSHDET 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +    P + V  P  +   +       G+ L      +     V  + +++  D V 
Sbjct: 65  QAIVARVEPQRVVSLPDALFGQLSSVVNGIGMLLLVERPAAELPGRVARTAMVL--DGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +   +  + + S+ + +S  GA   +              +
Sbjct: 123 DAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEA---EALI 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + ++       +A + G EG G+    +E A     +  PG +++
Sbjct: 180 PRLDVPVALTDSHGAQAIDDCDLTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ AAAV L+       K
Sbjct: 240 LNVAAAAAVCLFEQCRQQRK 259


>gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 245

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + +   ++ ++ A K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+      L              +N+ LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   ++   K A GA E++P IR++NL   L+++       +  ++       
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans
           SPH-1]
          Length = 263

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 11/244 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   +    + I ++      ++A  R   D        +     + + K+ G
Sbjct: 6   VLFGFHAVGVRMKTAPQSIIEVYYEATRRDARMRQFLDRAKSAGVRLIEADGERLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                   A   A     +LD           +  LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHGHQGVAARVEAVAQVHSLDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K
Sbjct: 126 AHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIWIIGTSDDAPK 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +       AL+LGAEG G+R  T++T   +  + M G + +LNVS A+ V LY    
Sbjct: 186 TLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALR 245

Query: 279 HFAK 282
              +
Sbjct: 246 QRGQ 249


>gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 285

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 4/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   Q       G+  V  AL+   +    + A             
Sbjct: 20  NPLVKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVGKVA 78

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 79  ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVHADNGDVWVALDRVRD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    GII     +   S    ++  G++  +P  + +       +  
Sbjct: 139 PGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAKATTEAFLAWRGA 198

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G         +      +     + L++G E +GL      +   +  +   G   +L
Sbjct: 199 FSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADSL 258

Query: 264 NVSNAAAVALYITQN 278
           N++ A  + L+  + 
Sbjct: 259 NLAVATGIMLFEIRR 273


>gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
 gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
          Length = 252

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 46  VQAGVT-IEKIFALENYRDQLA-------SFPQTVWVSEDILLDLADSQTPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGEADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 156 QGSHFHLPIYRMSSQALLEKAKKAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 216 SSLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251


>gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
 gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
          Length = 251

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 104/256 (40%), Gaps = 10/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q   +  ++  +     + G H V  A+      + ++  +++     ++  
Sbjct: 6   SNKKIKDIQKLKEN-KNIKKYGKYLIEGKHLVEEAMQAN--VVEEIFISESFD---EYKL 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V    +  +         +       +      ++  + +++LD V DP 
Sbjct: 60  IEAFQGEITKVADSVMRHLSDTITTQGII---AVCNIEEKKLDIKKYKKVLILDRVQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A AF+ D II  K  +      + +S  G+  HI      +L D L+ M  +
Sbjct: 117 NLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVDLVDLLEHMKDF 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L +D        I    +A+I G EG G+  +  +   ++  + MPG  ++LNV
Sbjct: 177 SIFATSLKADKYIEQLDNI-VGNVAVIFGNEGSGVSEEILDKVNNLLKISMPGKAESLNV 235

Query: 266 SNAAAVALYITQNHFA 281
           S AA + ++    +  
Sbjct: 236 SIAAGIVMHYISTNLK 251


>gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 247

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
            ++LF+YG H + A L+   + I ++    N   +           H   V+    Q ++
Sbjct: 2   SKSLFIYGFHGIQAQLDTNPQNILKVSTLDNRQDKRLNTLIQQLDQHGIRVEKTSKQKLE 61

Query: 103 KIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+ G    HQG+  E           L   +  + +  L+++LD + DP N+GA LRSA 
Sbjct: 62  KLSG-SRTHQGVVAEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSAN 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D ++  K  S   +A++ K+++GAL  +    ++NL+ +++ +       IGL   
Sbjct: 121 AAGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIWIIGLDGS 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +   Q   +  IA+++G EG GLR  T+++   +A + M G +++LNVS A  +AL+ 
Sbjct: 181 TDQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFE 240

Query: 276 TQNHF 280
           T    
Sbjct: 241 TSRQR 245


>gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 253

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + + ++      ++A  R   D        +       + K+ G
Sbjct: 7   VLFGFHAVGVRLKTAPKSVLEVFYDVSRRDARMRQFTDRVREAGVRMVECDGLRLAKMCG 66

Query: 107 KEAVHQGLALETA---------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+               LL    +A     LL+VLD V DPHN+GA LR A   
Sbjct: 67  SHG-HQGVVARVDAVAQVTSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D++
Sbjct: 126 GAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWCIGTSDDAE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        +ALILGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 186 KTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEAL 245

Query: 278 NHF 280
              
Sbjct: 246 RQR 248


>gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 329

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 20/288 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRK 67
           K    K        + +   +   +     +  +  E   + G ++V  AL         
Sbjct: 43  KAHKAKQLAERSAAKRNPGARSAGAAKSGPKGRATEE--VVTGRNSVVEALRAGIPAKAL 100

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
              +    +   +           P+       +D++  ++AVHQGL L+  P       
Sbjct: 101 HVAIRIEMDDRVKESLKIAAERGIPLLETGKPELDRMT-EDAVHQGLVLQIPPYDYQDAY 159

Query: 128 -------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                         V N+ L + LD + DP N+GAI+RS  AFS  G+I  +R S   +A
Sbjct: 160 ELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTA 219

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233
              K+++GA   +P  R SNL +AL++  + G   +GL  D    L       + + +++
Sbjct: 220 SAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLDGDGDVSLPDLTLATEPVCIVV 279

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+EGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 280 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 327


>gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 261

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVLKLTAVLPEDGIFSVSDGILKKISS-LSCADEILTLID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +  +L   D V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 102 IPLGGTLPDKGDCAVL---DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LLDIYSQADLEIWLAHYEDRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
          Length = 256

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 23/277 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ ++ S +                        +     +   L G H V  A
Sbjct: 1   METITSVQNSRVKSWQKLQTK-------------------KGRQASKTYLLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +   K+  ++AT   LA       LP   PV  +      K+       QG+  E + 
Sbjct: 42  IQHEG-KLHAIMATPEQLAEHQE--ALPLGVPVFEITTDIAKKLSD-LVTPQGVFAEVSL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       +    + LD + DP NIG ++R+A A    G++         S    ++ 
Sbjct: 98  PTATREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+                +               L       + ALI+G EG+G+
Sbjct: 158 QGSQFHMTLTTGDLQDWTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +  T   ++ + G  ++LNV+ AA +A++  +
Sbjct: 218 AADLAKMTTKNLYIPLTGDAESLNVAVAAGIAMFALK 254


>gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
 gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
          Length = 329

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 115/288 (39%), Gaps = 20/288 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRK 67
           K    K        + +   +   +     +  +  E   + G ++V  AL         
Sbjct: 43  KAHKAKQLSERSAAKRNPGARSAGAGKSGPKGRATEE--VVTGRNSVVEALRAGIPAKAL 100

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
              +    +   +           P+       +D++   +AVHQGL L+  P       
Sbjct: 101 HVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAVHQGLVLQIPPYDYADAY 159

Query: 128 -------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                         + N+ L + LD + DP N+GAI+RS  AFS  G+I  +R S   +A
Sbjct: 160 ELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVPERRSVGVTA 219

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233
              K+++GA   +P  R SNL  AL++  + G   +GL  D    L       + + +++
Sbjct: 220 SAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDGDGDVSLPDLSLATEPVCIVV 279

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+EGKGL    +E    +  + +   +++LN S A  + LY      A
Sbjct: 280 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQRA 327


>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 110/270 (40%), Gaps = 15/270 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---AR 80
           RR+++   + +    + R   +     ++G+H +  AL     +I +++A K+       
Sbjct: 23  RRDNKSAGQDKKAATQDR-RIRFSEDLIWGIHPIVEALKYEPNRISEIIAQKDRRGAKFD 81

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------- 133
              +        V  +   ++       A HQG+  +                       
Sbjct: 82  EIVELARAAKVKVTFIDSISLQGDGAASARHQGVIAKVTQADLMDFADFLQKFKDAVDRG 141

Query: 134 ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               ++V D + DPHN+GAI+RSA+A    G++ T+  S       AKS++GA+ H+   
Sbjct: 142 EKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHMDIC 201

Query: 191 RISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++NL  +L +      +    +       L     N    +++G+EG G+RP  +    
Sbjct: 202 QVTNLVKSLAELKKVGAWVFGAIKDADAVSLFDADLNVPACIVVGSEGTGIRPLVRRECD 261

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M G + +LN S AAAV L+     
Sbjct: 262 IQLSIPMVGELDSLNSSVAAAVILFEAMRQ 291


>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
          Length = 338

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 124/267 (46%), Gaps = 12/267 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
            R  +  K   +           E   LYG  +V AAL N SR + ++  T+        
Sbjct: 66  SRAPKTIKTRMAPEAAPTVVESDEAELLYGKQSVLAALQN-SRPLNRVWLTEKLRYDPRF 124

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133
               DA       +  V P+ +D++      HQG+A + A       +        R   
Sbjct: 125 LRLLDAAKAGGAVIDIVEPRRLDQLTA-GGNHQGVAAQAAAHPYVEFEELIASLVERPDP 183

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L+  D + DPHN+GA++RSA AF   GII  +R +   +A +AK A+GA+EH+P  R++
Sbjct: 184 VLLAADGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVT 243

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A++++   G+Q +G    + + L +   +  + +++G+EGKG+   TQ     M  
Sbjct: 244 NLNQAIERLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMVS 303

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + + G   +LN S A  + LY      
Sbjct: 304 IPLAGKTTSLNASVAGGIMLYEVMRQR 330


>gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
 gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 35/278 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  + + K     K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +   +  R IF L    + +              V  V    +  +       QG+  E 
Sbjct: 40  VQAQAEFRNIFVLEIFFDKVKDFSQ---------VHVVTADILADLAD-SKTPQGIVAEI 89

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A         ++   L +  + V DP N+G I+R+A A   DG+  ++  +   +    +
Sbjct: 90  AFEKQSAPSFLKGKYLFL--EDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLR 147

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G+  H+P  R+                     S       +       AL+LG EG+
Sbjct: 148 SMQGSHFHLPVYRVKTADFLELAKQVQLPILATTLSKDSMDYRELAPLSDFALVLGNEGQ 207

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+  +  E A ++ H+ M G  ++LNV+ AA + ++  
Sbjct: 208 GISHEMAEAADNLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 257

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 30/276 (10%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I   K++K+   K  H                     +   +     + G H    AL
Sbjct: 11  KRIDSAKNQKVKDWKKLHTK-------------------KERLKTNTFLIEGEHLAEEAL 51

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            +       L+  ++A+      A+L    P   +       +   E   +  A+     
Sbjct: 52  KSKGTVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQRIAAVC---- 102

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                +     + L+++D V DP N+G ++R+A A   D ++     +   S    +SA 
Sbjct: 103 -HMPEEKPDPLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQ 161

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G+  HIP ++        +              +           +  ALI+G EG G+ 
Sbjct: 162 GSHFHIPILKRPLDEFIDELKSQGVAIYGTALENGAVYQ-SVKPEESFALIVGNEGAGVD 220

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 221 AGLLQKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256


>gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 269

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 91/248 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R   +           +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRLEPEKGLFIAESPKVIKVALDAGYEPLAILCEQKHITGDAANIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P+L    +  R ++ ++++D V D  NIGA
Sbjct: 77  DIPVYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++  +      +    + + GA+  +P+  +      L +        
Sbjct: 137 IFRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPWTWLDGPLSDLARWGFRTVAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +             K+A+++G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200]
 gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTAEAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ A  + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245


>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301]
 gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301]
          Length = 261

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + R++  +K+++     SR         L GVH + A +      +  ++    +     
Sbjct: 7   ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    P   +P     ++    +    LA     +  P L A    +  ++L+ + 
Sbjct: 67  GLIQTLTEIPTIMLPTLMFAELTPVASATGILA----LVKIPQLTAPEQPKFALMLEDIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G++LR+A A   + +  +   + + S    +   GA   +P +  +NL   L   
Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDNF 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PG 258
           +         ++   + L  +      A ++G EG GLR +T   A     + M     G
Sbjct: 183 NG----NSYATAMHGESLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN   AAA+ L+  +  
Sbjct: 239 SVESLNAGAAAAICLFERKRQ 259


>gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 268

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 14/269 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALAR 80
           + RN+   +   S+++        +   ++G+  V  AL       KI      + A+ +
Sbjct: 1   MDRNYPKKRFSSSYDENK---PANDKDMIFGIRPVIEALEAGKEIDKILIQRNIEQAVVQ 57

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------- 133
             ++       PV  VP + +D++      HQG+    + +   +LD + ++        
Sbjct: 58  ELFELANRVKVPVIKVPVEKLDRVT--RKNHQGVICYLSAINFASLDNIVSACFESGKNP 115

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD V D  N GA+ RSA     D +I   R +   ++   K+++GAL HIP  R+ 
Sbjct: 116 LLVMLDRVTDVRNFGAVARSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVD 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L D ++ +   G + I  S  +   +  E   D   +++G+E  G+       A +   
Sbjct: 176 HLIDTVKYLKQCGLRIIACSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVT 235

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G I +LNVS A  + L        K
Sbjct: 236 IPMSGHINSLNVSVATGMILSEVTRQRLK 264


>gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 246

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 107/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +    R I ++ A ++   +L   A  P       V    +  +   +   QG+      
Sbjct: 40  VQAGVR-IEKIFALESYRDQL---AAFPQTV---WVSEDILQDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFSQGKFLFL--EDVQDPGNVGTMIRTADATGFTGVIVSDKSADIHSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S  T   +   S         S   K   +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSLATFIEEAKKSNLPILATTLSKESKDYRELSPLENFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 254

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LL T+N     + +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  NKILNDVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 247

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDK 103
           E+ F+ G + V  AL +  R I +L   + +              +   V+ VP + I++
Sbjct: 2   EHEFIIGRNPVLEALKSG-RDINKLWIAEGSQGGSMGQITQLAKRNGVLVQFVPKKKIEQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V    +HQG+A + A      LD           S   ++LD + DPHN+G+I+R+A A
Sbjct: 61  MVD--GIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPHNLGSIMRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR S   +A +AK+++GA+EH+P  R++NL+  + ++   G   +G  +  
Sbjct: 119 VGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDRGVWIVGTDAKE 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + L++G+EGKG+    +E    +  L M G + +LN S AA++ +Y  
Sbjct: 179 SDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNASVAASLLMYEV 238

Query: 277 QNHF 280
               
Sbjct: 239 YRKR 242


>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 255

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 8/258 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +     L + +   K+++   QK ++ +Q     + G H V  A+   +  I  L  T  
Sbjct: 2   NRMKEILSKKNILIKEVKKLAQK-KYRNQTNTYIIDGWHLVQEAIAASA-PINYLFVTDK 59

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            +              V  +  +    +          A+     +  T+         +
Sbjct: 60  GIQETGNQLKDYQD-KVFRISDEVAAFLSDLPTPQGIFAVIEKETVQETI-----HGNWL 113

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD+V DP N+G ++R+A A    G+      +   S  + +S  G+  H+P +      
Sbjct: 114 ILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILEGDVPA 173

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
              +             +       +  K    A ILG EG+G+ P          ++ +
Sbjct: 174 FIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYIPI 233

Query: 257 PGIIKALNVSNAAAVALY 274
            G  ++LNV+ AA + +Y
Sbjct: 234 YGQAESLNVAIAAGILMY 251


>gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
 gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
          Length = 262

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A         V  + +++  
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARPAPALPARVAGTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++             S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IE---RLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
 gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
          Length = 250

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103
           +   LYG+++   AL    R+ F+L  +++A                 PV+    + I +
Sbjct: 2   KEEILYGINSAMEALR-GKRRAFELFVSRDASDRRMEKLLKLATEKGVPVRNRDKRDISR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+AL+        L  + ++        L++ LD V DPHN+GA++RSA  
Sbjct: 61  LCGTD-HHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  +   +A + KSA+GA E IP  +++NL  AL ++   GF   G +  +
Sbjct: 120 AGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L  +  +  + +++G+EG+G+RP  ++    +  + + G + +LN S A  V L+  
Sbjct: 180 ASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 LRQR 243


>gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MC40-6]
          Length = 247

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
 gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
          Length = 234

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 4/230 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG   V   L+   +     +  +N+ L     D        +  V  +  DKI   + 
Sbjct: 4   IYGRKPVLDTLDTDIKVYKAYILKQNSKLVDKIIDKLNQKNIEISFVDKRFFDKI---DM 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+ LE       +L+ + +S  L++LD + DPHN+GAI+RSA +F  D +I  +R S
Sbjct: 61  NHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAIIRSAESFGFDAVIIPERRS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S ++ + K+++GA+ +I  +R++NLT  ++ +   GF   GL+ ++   +       K+
Sbjct: 121 ASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIYGLAGEAHSDISHADLRGKV 180

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L++G EG+G+    +E    + ++ M G + +LN S AAA+++Y     
Sbjct: 181 GLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230


>gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 9/240 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H++++ +      + ++   +   +            +           +D +V  
Sbjct: 7   IYGFHSITSQIRLDPLVVKEIFIDEARSDGRVNDLMKIIKANEVKFHLSTKDRLDGMVSG 66

Query: 108 EAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 +        +   +     +      L ++LD V DP N+GA  R A A   D 
Sbjct: 67  NKHQGVVALVREAQNKYVTVEDIIEENYDKPLLFLILDGVVDPQNLGACFRVADAMGVDA 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K A G  E +P++ ++NL   ++ + +      G   ++ K L+
Sbjct: 127 LICPKDNAVGLNATVRKVACGGAESVPFVVVTNLARTIRYLKNSNVFVYGTDDNANKSLQ 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      IAL++G+EGKG+R  T E    +  + M G +++LNVS A+ + LY      +
Sbjct: 187 KTNFKGSIALVMGSEGKGMRRLTNELCDDIFSIPMMGQVESLNVSVASGICLYEINRQRS 246


>gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 276

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 5/257 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K ++    K     +  +    G   V  AL      + +L AT  A  R       
Sbjct: 12  PRVKAVRRL-TKRAFRDRDRSFLAEGPQAVREALALEG-VVVELFATAEAEQRHADIVAA 69

Query: 88  PHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V     + + ++         LA+     +         ++L+ VL HV DP 
Sbjct: 70  ATAAGLAVHRASGEVMAELAQTVTPQGLLAVCRFVHVPLDGAVTAGARLVAVLAHVRDPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G +LR+A A   D ++ T       +    ++++G+L H+P      +  A+Q++   
Sbjct: 130 NAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVTTGVPVAQAVQRLKDA 189

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +      K+ L+    +   A I G E  GL  +    A  +  + + G  ++LN+
Sbjct: 190 GLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADEVVRVPIHGRAESLNL 249

Query: 266 SNAAAVALYITQN-HFA 281
           + AAAV LY +     A
Sbjct: 250 ATAAAVCLYASARSQRA 266


>gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14]
          Length = 242

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V  +L      K++     +                 +   P +T+  +
Sbjct: 2   EQNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L          ++ L+++LD + DPHN G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
 gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LLAT+N       +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  SKILNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNTKENIDEIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 14/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL    R I ++   + +                  V  VP + +D++
Sbjct: 3   TDYIAGKNPVIEALKAG-RDINKIWVAEGSQKGQMQQVLGLAKESSVQVLFVPKKKMDQM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V   + HQG+  + A     +LD +         + L+++LD + DPHN+G+I+R+A A 
Sbjct: 62  V---SNHQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLGSIMRTADAV 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+EHIP  R++NL+  + ++   G    G  +  K
Sbjct: 119 GAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIWVTGTDAKGK 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q   +  + L++G+EGKG+    +E    +  L M G + +LN S AA++ LY   
Sbjct: 179 QDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVAASLLLYEVH 238

Query: 278 NHF 280
              
Sbjct: 239 RKR 241


>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 283

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+   ++KSR   +     + G   +  AL      +  LL      A      
Sbjct: 23  QNPLIKKIVLLSEKSRERKKVGICVVEGAREIRLALE-GGYTLETLLYQPEIFAEEHLQR 81

Query: 86  NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHV 141
            L           +  +   KI  + +    +A ++T      TL    +S LL+V +  
Sbjct: 82  LLSYTAQKANPIAISKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFATDSPLLLVAEAP 141

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D +I                +S        I   + T+ +  
Sbjct: 142 EKPGNIGALLRTADAANIDAVII-ANPKTDLYNPNIIRSSVGCVFTVPIATGSTTEVIDF 200

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G  +   +  + KP  +       A+++G E +GL  +    +T    + M GII 
Sbjct: 201 LKAKGINSYCAALTASKPYYEVSFKKASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGIID 260

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++NVS AAAV ++  +   
Sbjct: 261 SMNVSVAAAVLIFEAKRQR 279


>gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           selenitireducens MLS10]
          Length = 255

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 8/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
               ++YG + V   L +        +A  +   +++    L       V+TVP + +D+
Sbjct: 4   ANQDYVYGKNPVIEVLRSGQTVHKVWIAEDSMKGQMNQVLGLCKKMNVQVQTVPRKRLDQ 63

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    A    +A   A   +   D              +VLD + DPHN+G+ILR+A A 
Sbjct: 64  MADGIAHQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPHNLGSILRTADAS 123

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   ++ +AK+++GA+ H+P  R++NL   + ++   G   +G  +   
Sbjct: 124 GAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQGLWFVGTDAKGD 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              E    +  +AL++G+EGKG+    +E    +  + + G + +LN S AA++ +Y   
Sbjct: 184 VSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNASVAASLLMYEVL 243

Query: 278 NHFAK 282
               +
Sbjct: 244 RKRRE 248


>gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153]
 gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           OX99.30304]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +    +   +      +        +     V +V    + KI         +     
Sbjct: 43  LQSGGMPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVSDGILKKISS-LTCADDVLALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L A  +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++
Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LSEIYPQADLEIWLARYEDRVFATALREEKQAVLYNEDLREPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      +
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 252

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 46  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 156 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ A  + ++  
Sbjct: 216 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 251


>gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ A  + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245


>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 255

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 25/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++  +   K                    +   +   +     + G H    A
Sbjct: 1   MKRIESNQNSLVKHWKK------------------LSTTRKERDKFAEFLVEGFHLTEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      +  L+  +       WD          +V      +I   E      A     
Sbjct: 43  LR-KKDLVKSLIVREGVDIPEGWDI---EGVAHYSVTATVAKEISETEHTQGIFAHCA-- 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D  ++   L+++D V DP NIG ++R+A A   D +I  K  +   +    +SA
Sbjct: 97  QPEFTEDEQKSWTKLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+   I  ++   +    Q   S          +S    E +      ALI+G EG G+
Sbjct: 157 QGSHFQISIVKGELMEWTEQTKASGIPIFGTALQNSTPVHEAKTLEQ-FALIVGNEGSGV 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P   +       + + G  ++LNV+ A  + LY
Sbjct: 216 DPVLLQQTDQNLMVPLYGNAESLNVAVATGILLY 249


>gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325]
 gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325]
          Length = 271

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 132/270 (48%), Gaps = 16/270 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75
           +++N+  YK+++  N++ +   Q     P+   + G + +  A+ +       L     +
Sbjct: 1   MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AV 129
               +  +          + VP + +D    +   HQG+    AP     LD       +
Sbjct: 61  KGRLKSIFAIANEKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLDI 118

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             S  L++LDH+ DPHN+GAI+R+A A    GII  KR +   S    K+++GA+EH+P 
Sbjct: 119 NKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248
           IR+S+LTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+     +  
Sbjct: 179 IRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKEC 238

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + HL M G I++LN S AA + +Y    
Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268


>gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 318

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 11/259 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLAT-KNALARLDWDANLP 88
           + +   ++++         + G + V   L+   PS  ++  L T  +            
Sbjct: 56  ERRDSGRQAKKDPDNTPELVVGRNPVIECLHAHVPSTALYVALGTGNDDRLSEAVHTAAE 115

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141
              PV  V    +D++ G   +HQG+ L+  P      D             L++VLD++
Sbjct: 116 RGIPVLEVARDEMDRMTG-NGMHQGIGLQVPPYKYAADDDLIERAKDSGRPGLIVVLDNI 174

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA++RS  AF   G++  +R S S +AV  ++++G    +P  R +NL  +L+K
Sbjct: 175 TDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLKK 234

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G+Q +GL +     L+     D + +++G+EGKGL     ET   +  + M   ++
Sbjct: 235 FQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTVE 294

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN S AA V L       
Sbjct: 295 SLNASVAAGVVLSEFARQR 313


>gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella
           violacea DSS12]
 gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella
           violacea DSS12]
          Length = 251

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            +    +G+H V A L +   ++ +L        +      ++   +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKHSPERVIELWVLLGRDDKRLMPILESAAEYGVSVQYAARKVLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAIL 151
              G    HQG+      +                     +  L++LD V DPHN+GA L
Sbjct: 62  DKSG-GGQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G
Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++  L +      +A+ +GAE KGLR  T+E   S+  + M G + +LNVS A+ V
Sbjct: 181 AAGEAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGV 240

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 241 CLFEAVRQR 249


>gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 257

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104
             + +G+H V   L    + + +L   K   +   +           PV  +P   +D++
Sbjct: 3   LDYAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDEL 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSA 154
           V          L         L                 L++VLD V DPHN+GA LRSA
Sbjct: 63  VPGRHQGVVAELGDNTAGQSDLRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLRSA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     ++  K  +   +AV+ K A GA E +P +R++NL  +L  + + G    G + 
Sbjct: 123 DAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGTAG 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ + L        +AL++GAEG G+R  T+E    + +L M G + +LNVS A  V L+
Sbjct: 183 EASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCLF 242

Query: 275 ITQNHF 280
             +   
Sbjct: 243 EIRRQR 248


>gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 243

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 7/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +TV  +L    + ++++   KNA               V  V  + +   +    
Sbjct: 4   YIYGKNTVLESLK-GEKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVGNV 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG+  +T      ++D            LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 63  VHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGVI 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   ++ +AK ++GA++++   +++NL+  L  +   GF  +G   +  +     
Sbjct: 123 IGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRAI 182

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             N  + +++G+EG G+    +        L M G + +LN S A A+ LY   N  
Sbjct: 183 DYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYNSR 239


>gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 289

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 25/277 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------------- 72
           +++  K +    +K++  ++       G      A   P   + Q+              
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVCVSESFYETCMQGN 62

Query: 73  ---ATKNALARLDWD------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                K+   +   +          +    + V       +   +     L +   P  +
Sbjct: 63  MQDCMKSCTPKHGEEKLNRKVLERLNETGYEIVSDNVFKSVSDTQTPQGILCVIKKPEYA 122

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                      L++L+ + DP N+G ++R+       G+I  +      +    +S  G+
Sbjct: 123 LEKLIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGS 182

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P+    +L   +  +                  ++     K A ++G EG GL  +
Sbjct: 183 IYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDE 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A +   + M G +++LN + +A++ +Y T    
Sbjct: 243 IADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 258

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + S    + +   L G H   A L    +KIF L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKIFSLFTTEQALEHEDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V  + + + +                 + +        L++  +++ D
Sbjct: 67  KKITELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYNVDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFQ 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      + A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 251

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF---PVKTVPPQTIDKIV 105
            L G H V A L      +  +    +   R   D            +     + + K+ 
Sbjct: 4   ILVGFHAVQARLRVDPDSLKSVYFDPSRRDRRMGDFLKQAEEILGERLHAADAERLHKLA 63

Query: 106 GKEAVH-------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +          +     T   +    ++ +   L +VLD V DPHN GA LR A    
Sbjct: 64  GHDRHQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++  K  S S +A ++K +SGA E IP I ++NL  ++++M   G   +G   +++K
Sbjct: 124 VDAVVIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAEK 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        IA+++GAEG+G+R  T+ET   +  + M G++++LNVS A+ V LY    
Sbjct: 184 SIYDLDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEALR 243

Query: 279 HF 280
             
Sbjct: 244 QR 245


>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
 gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
          Length = 279

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 106/282 (37%), Gaps = 10/282 (3%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN  +  K+ ++ ++K          +   K+++    + +H +Q       G+   + A
Sbjct: 1   MN--TSGKAPRVGAVK----QITSHANPIVKEIKGLIAQRKHRTQSGLFVAEGLKLATDA 54

Query: 61  LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L       +  L  +   N +A+    +       +  V    +  +  K+     + + 
Sbjct: 55  LEAGWDVRYLALGPEARENPIAQQAAASAKARGALILEVNTAILSAMTRKDNPQMVVGVY 114

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +S +     ++   + LD V DP N+G ++R+  A    G++     +   +    
Sbjct: 115 EQKTVSLSNIDPNSAATWVALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETV 174

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  G+L H+P I+ +     L     W    +G   +           + + L++G E 
Sbjct: 175 RATMGSLFHVPIIKTAKD-AFLDFAKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQ 233

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +GL         ++  +   G   +LN++ A  + LY  + +
Sbjct: 234 QGLDASMTRVCKTLIRIPQVGQADSLNLAVATGITLYEIRRN 275


>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 260

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++    +    +     L GVH   A +    + +  +++ ++       
Sbjct: 6   SRDNALFKHLKTLATSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCVVSERHYDHAEVA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +   +        L L     +      +    +++  D V D
Sbjct: 66  PVLALIEAERVVVLADALFTQISGVVNGIDLMLVIETPVGHLPARIEQDCIIL--DGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA A            + + S    ++  GA  H+  +    L        
Sbjct: 124 AGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTL---ESLAP 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +   +        +A ++G EG G+        T    +  PG +++L
Sbjct: 181 RLAVPLLATSSHADAAVFDTDLRGPVAWVVGNEGAGVSDGWMAHVTRKVGIPQPGGLESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A A+ L+      
Sbjct: 241 NVAAATAICLFEAVRQR 257


>gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           8013]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            V +V    + KI         +    
Sbjct: 43  LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L A  +    +VLD V DP N+G +LRSA A     ++  K  + + S  + +
Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +     ++L   L       F T  L  + +  L  E   +  A + G EG 
Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATA-LREEKQVVLYGEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 262

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 2/256 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             +L      +  +  +  D I   ++                L  + +S+  ++L+++ 
Sbjct: 65  CISLLRESCKMIQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P              
Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      SD    L +E    K A+++G EG G+    ++       + +    ++
Sbjct: 185 KGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243

Query: 263 LNVSNAAAVALYITQN 278
           LN S AA+V  +    
Sbjct: 244 LNASVAASVIAWEMSK 259


>gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 313

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 13/255 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHP-FPV 93
           Q+ R   +  +  + G + V  AL      S    Q     +   R             +
Sbjct: 59  QQRRGGGRSSSELVVGRNPVVEALREGVPASTLYVQQFIDNDERVREALQLAAERGGINL 118

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146
              P   +D++      HQGL L+  P      +             L++ LD V DP N
Sbjct: 119 MEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDLVAGAHDEDEDPLIVALDGVTDPRN 177

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA++RS  AF   G++  +R +   +A   K+++G     P  R +NLT AL+     G
Sbjct: 178 LGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAG 237

Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +GL++D +  + +       + +++G+EGKGL     ET      + MPG  ++LN 
Sbjct: 238 IVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNA 297

Query: 266 SNAAAVALYITQNHF 280
             AA + LY      
Sbjct: 298 GVAAGIVLYEAARRR 312


>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 28/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI   ++  I  +K     + R+                       +F  GVH V  +
Sbjct: 1   MKLIQSPENPLIKEIKKIKETQRRK-----------------------IFFEGVHLVETS 37

Query: 61  LNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +      ++  T+  + +     +       PV  +  +    I          A   
Sbjct: 38  LVSDYVFTEKVFVTEKFIEKQKNFLEILQEKKIPVIIISEKVAKTISDTVTPQGVFA--I 95

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A      ++ + N   +++ D + DP NIG I+R+A AF  + ++ T       S    +
Sbjct: 96  ADFKIKNINDLSNPTFIVIADRIQDPGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALR 155

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++G++     +    + +  + +  +G   +     +            +A++ G E K
Sbjct: 156 ASAGSIF-FLPVIKVTVKEIEEFVSKYGLNLVITDLKATISSFNMDFTKPLAIVFGNESK 214

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+    +    +   +   G  ++LNV+ AA   LY      
Sbjct: 215 GVSQDLRAIKHTSCKIPHKGKAESLNVAMAATAILYEILRQR 256


>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
 gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
          Length = 253

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 27/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  +   K+ ++   K                        +         + G H V  A
Sbjct: 1   MKYVQSAKNPQVKQWKKLQTK-------------------KERENSGTYIVEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + ++L  +       W+ +      V  +  +   K V      QG+      
Sbjct: 42  LKYKG-VVQEILVKEGVDLPSSWNMD---EVSVIALS-EDAAKAVSATETSQGVFAVCQQ 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L+    + L++  D V DP N+G I+R+A A   D I+  +  +   +  + +SA
Sbjct: 97  NQIGDLELQGKTFLML--DEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSA 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P I+ +  +   +              +S          D  ALILG EG G+
Sbjct: 155 QGSHFHLPIIKGNLSSWIDRLRTEEIPVYGTALENSAAYHTVNS-TDSFALILGNEGNGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P   ++     ++ + G  ++LNV+ AA + +Y  + 
Sbjct: 214 SPSILDSTDQNLYVPIYGKSESLNVAIAAGILMYHLKK 251


>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +     + +V    + KI    +    +     
Sbjct: 43  LQSGRKPVGVYIPEAKMPSEEVRKLTAVLPEDRIFSVSDGILKKISS-LSCADDILALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L  TL    +    +VLD V DP N+G +LRSA A     ++  +  + + S  + ++
Sbjct: 102 IPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA         ++L   L +     F T             E      A + G EG G
Sbjct: 159 GMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      +
Sbjct: 218 VGKAVLDRADKYVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQR 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 288

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 13/283 (4%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++ F  K  +    R +      + + +      +Q  +  LYG   V  A+    R++
Sbjct: 2   SDRPFRDKSDNRNSRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAMEE-ERQL 60

Query: 69  FQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            ++        +       +    +   +  V    +D+I   +A HQG+A + +P    
Sbjct: 61  NRIWVVNRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQIT-NKANHQGIAAQMSPYDYI 119

Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            L              ++++ + + DPHN+GAI+R+A A  C G++  +R +   ++ + 
Sbjct: 120 ELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVM 179

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K A+GALE++P  R+ NL  AL+++ + GF   G ++ + K L        I L++G+EG
Sbjct: 180 KVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTAAKTGKSLHTINLTGAIGLVVGSEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +GL   TQ++   +  + + G   +LN S AAA+ALY      
Sbjct: 240 EGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282


>gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
 gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
          Length = 263

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 138/245 (56%), Gaps = 7/245 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++     E ++L+G+H V  AL NP R+  +L+ T NA  +L  +A        + V
Sbjct: 15  KEQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKL-EEAIAASGVEPELV 73

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  +   +VHQG ALE  PL   +L           +++LD V DPHN+GAILRS
Sbjct: 74  EPRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVILLDRVTDPHNVGAILRS 133

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT---I 210
           A  F    +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + G+      
Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G +  + +   +  ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253

Query: 271 VALYI 275
           +ALY 
Sbjct: 254 IALYA 258


>gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 267

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 9/250 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +KS+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L  DA        +  
Sbjct: 11  KEKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLA-DAIATGGIEPEVA 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151
            P+     +   +VHQG ALE  PL    L+ V         ++++LD V DPHN+GAIL
Sbjct: 70  DPRKFPVPLDPGSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I TK +S  E+  LAK+ASGALE  PY+R++NL DA+  +   G+  +G
Sbjct: 130 RSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLKDMGYTVLG 189

Query: 212 LSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ ++   +   +       +AL++GAEG GLR KT+ET  ++  +       +LNVSNA
Sbjct: 190 LAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNA 249

Query: 269 AAVALYITQN 278
           AAV+LY    
Sbjct: 250 AAVSLYAVTR 259


>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 296

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 98/264 (37%), Gaps = 12/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                   +   ++S    +       G   V  A    +  + ++ AT++A  R     
Sbjct: 36  RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AGHLVEVYATEDAARRHPELL 90

Query: 86  --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV +   + +  +         + L             R  +L+ VL HV D
Sbjct: 91  DDARARGVPVLSASEEVLAAMADTVTPQGVIGLCRFLDTGFADVLARRPRLVAVLAHVRD 150

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D +I T       +    +++ G+L H+P +    + +A+  + 
Sbjct: 151 PGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVPVEEAVAGLR 210

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +         L+ E          A + G E  GL  +T+  A ++  + + G 
Sbjct: 211 GIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETRALADAVVRVPLHGK 270

Query: 260 IKALNVSNAAAVALYITQN-HFAK 282
            ++LN++ AAAV LY +      +
Sbjct: 271 AESLNLATAAAVCLYASARAQRGR 294


>gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 247

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 244

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+ +    I ++   K     L  +         + +  VP + + K+   
Sbjct: 7   IFGIRAVIEAIESG-ESIDKIFIQKGLSGELFSELKRTLSKGNYNISYVPQEKLYKLS-- 63

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  + +P+    L+         +     ++LD +ND  N GAI+R+A     D
Sbjct: 64  KGNHQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  ++ +   +A   K+++GA+ +IP  +++++ DA+  + S G QT+  +  +   +
Sbjct: 124 AIIIPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A+I+G E KG+ P   +T    A L M G I +LNVS A    LY      
Sbjct: 184 YNIDFKKPTAIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLYEVVRQR 243

Query: 281 A 281
            
Sbjct: 244 I 244


>gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 253

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + S  I ++L     ++   +    A       +       +  + G
Sbjct: 11  VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70

Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                  +A  T   L+  L    DA+    LL+VLD V DPHN+GA LR A A     +
Sbjct: 71  THRHQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   ++  AK ASGA E +PYI ++NL   L+++   G   IG + D+++ L  
Sbjct: 131 IAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLYD 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T+ET   + H+ M G + +LNVS A+ + L+       
Sbjct: 191 IALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQRT 249


>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 317

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 14/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
           S +  H  K R  +   +K  +    +R   +  +  + G + V  AL +    S    Q
Sbjct: 40  SARKGH-KKNRVANAQARKAATRRPVARRGGKGTSEMVVGRNPVFEALRDGVPASTLYVQ 98

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 99  QFIDNDERVREALQLATGRGNINIMEAPRPELDRLTNGL-NHQGLVLQVPPYEYAHPEDL 157

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  +   E     + +++G+EGKGL 
Sbjct: 218 TAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVIVVGSEGKGLS 277

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET   +  + MPG  ++LN   AA V LY      A
Sbjct: 278 RLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRRA 317


>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 312

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 24/287 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  KL R  RD          S    + E   + G + V   L+  
Sbjct: 36  TPKAEDRVYHA--AHKRKLERQRRD----------SGRHEREEADLVVGRNPVVECLHAK 83

Query: 65  SRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                 L+A     +               PV  VP + +D + G   +HQG+ L+  P 
Sbjct: 84  VPSEALLIAQGTGHDDRLSEAVQMANTRGIPVHEVPRRDLDNMTG-NTLHQGIGLKIQPY 142

Query: 122 LSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               +            + + +VLD++ DP N+GA++RSA AF   G+I  +R S   + 
Sbjct: 143 KYADVFDLIGGVRDRGETGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSAQVTG 202

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALIL 233
           V  ++++G    +P  R +NLT  +++    G+  +GL +  +  L+      D + +++
Sbjct: 203 VAWRTSAGTAARLPVARATNLTRTIKEFKDNGYMVVGLDAGGEHTLDTFDGATDPVVIVV 262

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKG+    +E    +  +     +++LN S AA V L       
Sbjct: 263 GSEGKGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQR 309


>gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
          Length = 268

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 1/247 (0%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           + ++           +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P 
Sbjct: 17  RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             + V P  ID+++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+
Sbjct: 76  EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIV 135

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IG
Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L SD+   L+         L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+
Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255

Query: 272 ALYITQN 278
            LY    
Sbjct: 256 TLYALTR 262


>gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
 gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
          Length = 294

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 142/245 (57%), Gaps = 7/245 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ T NA  +L  DA        + +
Sbjct: 47  KEQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVI 105

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG  LE  PL    L        +  +++LD V DPHN+GAILRS
Sbjct: 106 DPRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLLLDRVTDPHNVGAILRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225

Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E      K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285

Query: 271 VALYI 275
           +ALY 
Sbjct: 286 IALYA 290


>gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
 gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
          Length = 268

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 109/247 (44%), Positives = 150/247 (60%), Gaps = 1/247 (0%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           + ++           +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P 
Sbjct: 17  RPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPI 75

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             + V P  ID+++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+
Sbjct: 76  EPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIV 135

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IG
Sbjct: 136 RTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIG 195

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L SD+   L+         L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+
Sbjct: 196 LDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAI 255

Query: 272 ALYITQN 278
            LY    
Sbjct: 256 TLYALTR 262


>gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 13/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
              LYG + V  AL    RK+ +LL      +    +            V  V    +DK
Sbjct: 1   MELLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIARERRMQVAKVQRSELDK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                A HQG+ALE        +D             L+++ DH+ DP NIG ++R+A  
Sbjct: 61  RTA-GANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLMRTAEI 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSD 215
               GII   R S S +  +  +++GA+EH+   +I+N+   ++ +  +          +
Sbjct: 120 VGAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAGVEDDE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                ++      +AL++GAEG GL   T+E    +  L M G + +LN + A ++ LY 
Sbjct: 180 RAVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNAATAGSIILYH 239

Query: 276 TQNHFAK 282
                 K
Sbjct: 240 AWRVREK 246


>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
 gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
          Length = 246

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            LYG + V  AL +    ++      + A  R    +       ++  P   +D++ G  
Sbjct: 2   LLYGRNPVLEALRDGRVTEVLVARGVEEAFVR----SLKAFDVRLRFAPRIELDQLAG-T 56

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  E   L   T+D             L+++LD + DP N GAI+RSA      G
Sbjct: 57  TQHQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPRNFGAIIRSAEVLGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   S V+ K+A+GA  ++P  +  NL   +  +   G    G + ++ + + 
Sbjct: 117 VVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKEDGVWIYGAAGEAAQDIG 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + K+AL++GAEG+GLR   +E   ++  +   G +++LN S AA + LY       
Sbjct: 177 RTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARD 236

Query: 282 K 282
           K
Sbjct: 237 K 237


>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 318

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 14/274 (5%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
            A+ R  H+ Y+   + N++ +   +       + G + V  AL    P   ++  L   
Sbjct: 40  KAEDRPGHKAYRAANAANKRDQARQKKADRPELIAGRNPVVEALRADVPGTALYVALNID 99

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------ 128
            +                +  +P + +D+     A+HQGL L+  P      D       
Sbjct: 100 IDDRVNEAVRLAGDKGISILEIPREELDRKT-NRAMHQGLGLQVPPFEYAHPDDLMQAAR 158

Query: 129 -VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              N+ L + LD V DP N+GA++RSA AF   G++  +R S   +AV  ++++G    +
Sbjct: 159 DSGNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKL 218

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246
           P    +NLT  L+   S G   +GL +D    ++      D + ++LG+EG+GL    +E
Sbjct: 219 PIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGLSRLVRE 278

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  +   + M   +++LN S AA V L       
Sbjct: 279 TCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312


>gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
 gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
          Length = 273

 Score =  123 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 113/235 (48%), Positives = 152/235 (64%), Gaps = 1/235 (0%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +R         LYG HTV+AAL NP+R+I +LL T+NA  +L  D N+        V P 
Sbjct: 30  ARERDPDGPAILYGWHTVTAALANPARRIRKLLLTENAARKLA-DENINTRITPDIVRPG 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ID+ +G +AVHQG+  E  PL SP +D +    +++VLD + DPHN+GAI+RSA AF+ 
Sbjct: 89  EIDQRLGPDAVHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+TT R+SP  + VLAKSASGALE +P + ++NL  AL ++   G+ T+GL S+    
Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSAD 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L        +AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALY
Sbjct: 209 LAAVELRQPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263


>gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240355]
          Length = 261

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            + +V    + KI    +    +    
Sbjct: 43  LQSGGKPL-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L  TL    +    +VLD V DP N+G +LRSA A     ++  +  + + S  + +
Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA         ++L   L +     F T             E   +  A + G EG 
Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      A
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
            +++ + G H + A L  NP   I   +  K    RL+      +     ++      +D
Sbjct: 2   SKSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156
           K+   +      A    P+L    + +          L+++LD + DP N+GA LRSA A
Sbjct: 62  KLSNYQTHQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGACLRSANA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S S SA++ K+++GA+  I   +++NL+  ++ +       IGL S +
Sbjct: 122 AGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVIGLDSSA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q       A+I+G+EG GL+  T+++   +A + M G +++LNVS A  + L+  
Sbjct: 182 NTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEI 241

Query: 277 QNHF 280
               
Sbjct: 242 NRQR 245


>gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 268

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 97/271 (35%), Gaps = 4/271 (1%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + E+I  +       +      +  +     ++R   +           +  AL+     
Sbjct: 2   EKERIIEITSLEQPGVE----LFGALTEAQLRNRLEPEKGVFIAESPKVIRVALDAGYEP 57

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  L   K+               PV T   + + ++ G       L     P +    +
Sbjct: 58  LALLCERKHLAGDAADILARCPDIPVYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEE 117

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               ++ ++V+  V D  NIGAI RSA A   DG++ T       +    + + G++  I
Sbjct: 118 VCGGARRIVVIHGVTDTTNIGAIFRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLI 177

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P+        AL+++                      +  ++AL++G EG GL   T   
Sbjct: 178 PWTWADAPLAALRRLGFRTAALALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M   + +LNV+ A+AVA +  + 
Sbjct: 238 ADYTVRIPMAHGVDSLNVAAASAVAFWELRR 268


>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 18/277 (6%)

Query: 20  YAKLRRNHRDYKKMQSFNQK--SRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATK 75
            A+ R NH+ YK   +  ++  +R   +  +   ++ G ++V   L      I  L   +
Sbjct: 39  RAEERPNHKVYKMKNAATKREAARPRRKTGDVAEWVAGRNSVLELLKAT-VPIHGLYVAE 97

Query: 76  ----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128
               +   R  +         +  +    +DK+ G  AVHQG+A +              
Sbjct: 98  GTERDERMREIFKLAADQHVSLLEIGRVELDKLTG-GAVHQGIAAKLNAYDYADPRDLLA 156

Query: 129 ----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L+++LD V DP N+GA++RSA  F   G++  +R +   +A   K+++GA 
Sbjct: 157 LAAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAGAA 216

Query: 185 EHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +P  R++N      +            +    +    ++ +  + +++G+EGKGL   
Sbjct: 217 ARVPVARVTNLTRTLKELQEEGLMVIGLAADGDVELPSSQMLDGPVVVVIGSEGKGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ET   +  + M   +++LN   AA +ALY      
Sbjct: 277 VGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQR 313


>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 280

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 99/273 (36%), Gaps = 8/273 (2%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           +KI ++K         ++   K+++    + +  +Q       G+   + AL+      +
Sbjct: 8   QKIGAVK----QITSHSNPIVKEIKGLVAQRKLRTQSGLFVAEGLKLATDALSAGWGVRY 63

Query: 70  QLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
             L  +   N  A+            +  V    +  +  K+     + +    +LS   
Sbjct: 64  LALGPEARDNPAAQKAAATAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQNILSARD 123

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              + + + + LD V DP N+G I+R+  A    G++     +   +    ++  G+L H
Sbjct: 124 IDPQGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFH 183

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  +++   +       W                         L++G E KGL   T  
Sbjct: 184 VPLAKMTKE-EFKALAKDWPGTVAATHLKGSVDYRTPDYKQPALLVMGNEQKGLEDDTAA 242

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++  +   G   +LN++ A  ++LY  + +
Sbjct: 243 ACRTLIRIPQVGEADSLNLAVATGISLYEIRRN 275


>gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           961-5945]
 gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
          Length = 261

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +    +  +   +  +   +            + +V    + KI    +    +    
Sbjct: 43  LQSGGMPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L  TL    +    +VLD V DP N+G +LRSA A     ++  +  + + S  + +
Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +  I      +     +        L  + +  L  E   +  A + G EG 
Sbjct: 158 AGMGAHF-LSGIYPQADLEIWLASYKGRVFATALREEKQVVLYGEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 251

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P           L       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPVMNEKDLEQLLEQTPDVLLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PL 220
           I  +  S S +    K A+G  E + +I+++NL   L +M       +  +   ++  PL
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQVRVIGTMLDEQALPL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q      I +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVSVATGMALYEACRQR 246

Query: 281 A 281
            
Sbjct: 247 N 247


>gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
 gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 92/251 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R   +           +  AL+   + +  L   K+             
Sbjct: 46  FGTLTEAQLRNRIDPEKGIFIAESPKVIRVALDAGYQPLALLCEKKHIEGDAADIILRAG 105

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      +  R+++ + V+  V D  NIGA
Sbjct: 106 DIPVYTGSRELLASLTGYTLTRGVLCAMRRPAPRTPEEVCRDARRVAVIHGVVDTTNIGA 165

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D I+ +       +    + + G++  +P+  +     +L++M       
Sbjct: 166 IFRSAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFLVPWTWLPRPVSSLREMGFCTASL 225

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                       +  +  ++A+++G E  GL  +    +  +  + M   + +LNV+ A+
Sbjct: 226 ALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAAS 285

Query: 270 AVALYITQNHF 280
           AVA +  +   
Sbjct: 286 AVAFWELRARR 296


>gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
 gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
          Length = 233

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+YG +T+  A+    RKI+QL    N               P + V  + +  +V K+ 
Sbjct: 2   FIYGKNTIKEAIKA-KRKIYQLYLDANFKDNSFISFLKLSNQPYQLVDKKKLFDLV-KQK 59

Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            HQG+  +        LD+       Q  ++LD ++DPHN+GAILR+  A   DG+I +K
Sbjct: 60  NHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDGVIMSK 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           ++    +A ++K A GALE++    +SNL   + K+       IG  S++ + L +   N
Sbjct: 120 KHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLTKIPCN 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +A+I+G EG G+R   ++    +  + M G I +LNVS A+A+ +Y 
Sbjct: 180 QSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYA 228


>gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 257

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 97/255 (38%), Positives = 145/255 (56%), Gaps = 9/255 (3%)

Query: 31  KKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           KK +   +K +         ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA   
Sbjct: 2   KKPKWVIEKEQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAA 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPH 145
                + V  +     +   +VHQG+ALE  PL    L      R +  +++LD V DPH
Sbjct: 61  SGIEPELVDARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLLLDRVTDPH 120

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRSA       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + 
Sbjct: 121 NVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNM 180

Query: 206 GFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF  +GL  ++ + +E      ++  +AL+LGAEG GLR KT+ET   +  +   G   +
Sbjct: 181 GFLVLGLDGEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGS 240

Query: 263 LNVSNAAAVALYITQ 277
           LNVSNAAA+ALY +Q
Sbjct: 241 LNVSNAAAIALYASQ 255


>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
 gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
          Length = 267

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 24/285 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +IS  +++KI  L   +                   +SR   +     L G   + AA 
Sbjct: 3   EIISSSQNDKIKYLNKLY-------------------RSRTRRKEGVFVLEGKRLIEAAS 43

Query: 62  N--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                  ++F   A   A    D    L +   +  V  + + +        QG+     
Sbjct: 44  AGGADFERVFLSPAFFKADKNKDLIDKLQNRVSLDLVSEELLKE-TAATVNPQGIIAIVK 102

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                +    + +  +++LD + DP N+G ++R+A A   + +I  K      +  + ++
Sbjct: 103 EPNYSSEKFFKTADKILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRA 162

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237
           + G +  IP  +  +  +  + +               ++K   +     K+ L++G E 
Sbjct: 163 SMGGIFAIPIWQKVSKNEFKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNEA 222

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GL       A     + + G +++LN + AAAV  +       K
Sbjct: 223 NGLAEDLLNIADMKVKIPLKGEMESLNAAIAAAVISFEILAQQLK 267


>gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 98/283 (34%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            + +V    + KI         +    
Sbjct: 43  LQSGGKPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LTCADDVLALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L A  +    +VLD V DP N+G +LRSA A     ++  K  + + S  + +
Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +     ++L   L       F T  L  + +  L  E   +  A + G EG 
Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATA-LREEKQVVLYGEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
 gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
          Length = 304

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 127/286 (44%), Gaps = 19/286 (6%)

Query: 5   SKKKSEKIF-SLKDSHYAKLRRN--HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           S     K+  S K  H  +  +   H    + +     S  T  PE   +YG HTV AAL
Sbjct: 11  SGPNRGKVKPSSKPPHSPREDKPAIHP---RRRDRPVASAETEPPEEDLIYGRHTVLAAL 67

Query: 62  NNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            N  R + ++        +   +            V     Q +D+I  + A HQG+  +
Sbjct: 68  ENG-RSLNRVWVISQLRSDTRFQPLLQEAKAKGAIVDGASYQRLDQIT-RGANHQGIVAQ 125

Query: 118 TAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     L        +  +  +L+ +D + DPHN+GAI+R+A A    G+I  +R + 
Sbjct: 126 VTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAV 185

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +A + K A+GALE  P  R+ NL  +L ++ S GF   G  +   +PL        I 
Sbjct: 186 GINATVMKVAAGALETFPVARVINLNRSLTELKSAGFWIYGTVAGEFQPLYNANLTGAIV 245

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L++G+EG+GL     E    +  + + G I +LNVS A  +ALY  
Sbjct: 246 LVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYEI 291


>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 325

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 15/285 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K RR  R  ++  +     KS       +  + G + V+ A  
Sbjct: 38  TPKAEDRPYHP--AHKRKARREARQAQEAAIARARAKSSIRVPAGHELIAGRNPVAEAAR 95

Query: 63  NP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 ++F L   K+               PV  V  + +D      + HQG+A+E   
Sbjct: 96  AGVPIERVFVLDNVKDDRVEEVIRLASSMGAPVFEVTRRDLDVATDGAS-HQGVAIEVRG 154

Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +D             LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVT 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               K ++GA   +P  R +NL  AL+     GF  +GL      PL      +  + L+
Sbjct: 215 TAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLADGPLVLV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GAEG GL    ++T   +  + +   +++LN + A  +ALY   
Sbjct: 275 AGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEVA 319


>gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 330

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 103/285 (36%), Gaps = 31/285 (10%)

Query: 28  RDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSR------------------- 66
              K+++   +  K    ++     + G   V  AL + +                    
Sbjct: 44  PQSKRLREAAKLTKRSWRTKMGRFIVEGPQAVREALTHQATNKPHRATVGVEDGQTRSRP 103

Query: 67  --KIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              I  + AT +A  R             P++      + ++         +A+      
Sbjct: 104 TGAILDVWATSDAAERHPDILEHAQAANIPIREATSAALAELTDTVTSQDIVAIVEHIDT 163

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                  ++S+L++VL  V DP N G +LR A A   D +I T       +    ++ +G
Sbjct: 164 ELPQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAG 223

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------DKIALILGAE 236
           +L H+P +    L + ++   + G Q +   +           +         A + G E
Sbjct: 224 SLFHLPVVTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGLDLSQPTAWVFGNE 283

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             GL  K ++ A S   + + G  ++LN++ AAAV LY +  +  
Sbjct: 284 AWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNHN 328


>gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
 gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
          Length = 237

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILNNKGKNHKLIDKIINKLEDENVPIFYEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGII ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIIISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ +++  + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKKENFWVYGLAGEAEGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
 gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
          Length = 246

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALESYRDQL---VAFPQTI---WVSEEILRDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDLHQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+   +   +   S+        S   K   +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPIYRLPLASFVEEAKKSYLPILATTLSRESKDYRELSPLENFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 210 SSVMAESADQLVHISMKGRAESLNVAVAAGILMF 243


>gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae
           TIGR4]
 gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV200]
          Length = 246

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNTKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 245

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 32/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS K +  I   K   + K R++                     +  + G H    A
Sbjct: 1   MK-ISSKANPIIKQSKKLLHKKYRKD---------------------SYLIEGWHLFEEA 38

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                     +   ++ + R+           V  V P+ + ++       QG+  E   
Sbjct: 39  -KKAQVSFLHIFVLEDYVDRV------AADGKVIVVTPEVLKELTDSP-TPQGIVAEVKQ 90

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    +   LL+  + V DP N+G ++R+A A   DG++ +++ +   +    +S 
Sbjct: 91  EQLDLPSIGKGKYLLL--EDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSM 148

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP  R                      S+     +Q        L++G EG+G+
Sbjct: 149 QGSHYHIPVWRTDIYAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGI 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  E ++ + H+ MPG  ++LNV+ AA + ++
Sbjct: 209 STKMAEHSSQLVHISMPGQAESLNVAVAAGILIF 242


>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
          Length = 280

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 8/252 (3%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPF 91
           Q      +H  + +  +LYG H+V AAL +  RK+  L    +   RL    +A      
Sbjct: 6   QRRVNSWKHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGV 65

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHN 146
           P+     +     +G E+VHQG+AL+  P                  L+ VLD V DPHN
Sbjct: 66  PIHYEASRWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPNLVFVLDGVEDPHN 124

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+   F    +   K  + + S V AK++ GALE    +R++NL   L++    G
Sbjct: 125 LGAIVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRG 184

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +  +GL   S+ PL Q   +  + ++LGAEG GLRP T+ T   +  +     +++LNVS
Sbjct: 185 YWVVGLDGASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVS 244

Query: 267 NAAAVALYITQN 278
           NAAAV  Y  +N
Sbjct: 245 NAAAVTCYHLRN 256


>gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 244

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+ +     K+F     +  L +               VP + ++++    
Sbjct: 7   IFGIRAIIEAIKSGKTIDKVFMQKGLRGELFQELEHLLRSESINSSYVPVEKLNRLT--R 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG   + +P+    +D +           L ++LD ++D  N GAI+R+A     +G
Sbjct: 65  GNHQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVNG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+     +    K+++GA+  IP  ++ ++ DA+  M S G + I  +  +   + 
Sbjct: 125 IIIQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +  A+I+G+EG+G+ P   +   + A L + G I++LNVS A    LY      +
Sbjct: 185 DVSFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLYEAVRQRS 244


>gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1]
          Length = 267

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 5/257 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +     + RH        + G   +S AL+   R      A    L R +    
Sbjct: 9   NPRVKNLVRLRTR-RHRDAAGVTLVEGHDELSLALDAGVRPTEVYWAPD--LVRSEELLE 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                   +V  +   +I  +E+    LA+  AP        +R   L++V + +  P N
Sbjct: 66  RMPGARATSVTREVFARIAYRESPDGWLAVAPAPGRPLDELELRPDALVLVAEGIEKPGN 125

Query: 147 IGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           +GA+LR+A A   D   I T  R     +      AS        +  +   +  + +  
Sbjct: 126 VGAMLRTAEACGVDAVVIATPDRAGTDFANPNVVRASKGTVFAVPVASAPTAEVQEWLRR 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +++  +      L +       AL++G E  G+       A +   + M G + +LN
Sbjct: 186 RGVRSVVTTPAGTTELGRADLTGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSLN 245

Query: 265 VSNAAAVALYITQNHFA 281
            S AAAV L+      +
Sbjct: 246 ASIAAAVVLFEAVRQRS 262


>gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
          Length = 245

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A ++N   ++ ++LA K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+      L              RN  LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACLRTADAAGVSA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  S   ++   K A GA E++P IR++NL   L+ +       +  ++       
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 317

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 127/288 (44%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++  K  H AKL R  RD           RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECLHA- 84

Query: 65  SRKIFQLLATKNAL--ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +      RL     +      P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATNLYIAQGTRSDERLAEAVAIANARNLPILEVQRHVMDQMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +          +   + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +
Sbjct: 144 YKYADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R +N+T  +Q+    G+Q +GL +  +      +   D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +E    +  + M   +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQR 311


>gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 258

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/238 (33%), Positives = 137/238 (57%), Gaps = 9/238 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTID 102
            +N +LYG HT   AL N +R   +LL T+N+    + +           V+ V  + + 
Sbjct: 7   NKNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILS 66

Query: 103 KIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +++ K A HQG+AL+ AP+L         ++  +S  +++LD V D HNIG+ILR++  F
Sbjct: 67  EVLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++    +SPSE+A +AK+ASG L+ +P I ++N+   ++ +   G+   G  S++K
Sbjct: 127 NVDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAK 186

Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +++      KI +I G+EGKG+R   +E    +  + M  +I +LNVSNAAA+ LY
Sbjct: 187 ENIDEIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244


>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 253

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 25/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  KK+  I  +K                      + +H +Q     + G H V  A
Sbjct: 1   MKEIQSKKNTFIKEIKKL-------------------TQKKHRTQTNTYLIDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I  LL T   L+  +   +         +  + I  ++      QG+      
Sbjct: 42  LQA-KVPIKALLVTPRGLSEANGQLDDYQ--EESYLITEEIAAMLSDLPTPQGIFAVVEK 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      +   ++LD+V DP N+G ++R+A A    G+   +  +   S  + +S 
Sbjct: 99  QEQNL---QTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P +  +      Q   +         +    P  +  K    A ILG EG+G+
Sbjct: 156 QGSNYHLPILEGAIPPFLKQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGV 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+         ++ + G  ++LNV+ AA + +Y
Sbjct: 216 HPELLALTDKNVYIPIYGQAESLNVAIAAGILMY 249


>gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
 gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
          Length = 251

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 16/244 (6%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK- 107
           + G H +   L        ++ +    +    L+  A L     VK +    +D++V + 
Sbjct: 5   IIGFHAIEEGLKGAASGSVLYLVRGMGSNTQALERQALLTGKVLVKKIAKVEMDRMVDQA 64

Query: 108 ---------EAVHQGLALETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                        +G       +            +S L++VLD + DP N+GAILRSA 
Sbjct: 65  DHRGAVLDLMVPGKGSGARIPAMSVKEYCATLKDDDSALVLVLDEITDPQNLGAILRSAD 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            FS   +I  +R S   +  + K +SGA +++P   ++N+   ++ + S GF  +  +S 
Sbjct: 125 QFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLATVTNMNREIEYLKSQGFW-VYGASM 183

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S + + + +   +  L++G EGKG+   TQ+    M  + M G I +LNVS A  + LY 
Sbjct: 184 SGQAVYKTVFPKRTVLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGILLYE 243

Query: 276 TQNH 279
            +  
Sbjct: 244 VRRQ 247


>gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 277

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 86/265 (32%), Gaps = 13/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83
            +   K+     ++     Q +   + G   +  A++   RK+  L          +   
Sbjct: 14  QNPKIKQAVKLRER-HARKQTDLFLIEGYRELLRAVDAG-RKMETLFFCPELYLGTNEAS 71

Query: 84  --DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLM 136
                      +         K+  ++    GL            D       +N+  L+
Sbjct: 72  LIQKIAKTGASLYQCTESVFKKLSYRDR-PDGLIAIAPQFHLSLEDLGKQLKNQNNPFLI 130

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V + +  P N+G ILR + A   D +I                AS        +  S   
Sbjct: 131 VAEAIEKPGNLGTILRCSDAVGLDALIVC-DACTDIHNPNVVRASVGTLFTVPVIESQGA 189

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + LQ +   G   +  +  +K+ L        +A+ +G E  GL P+  E A     + M
Sbjct: 190 ETLQWLKQKGISILAATPHAKQELADIDLTGPLAIAVGTEQLGLSPQWMEQADIQVRIPM 249

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
            GI  +LNV+ A  + LY       
Sbjct: 250 YGIADSLNVAMATTILLYEALRQRK 274


>gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis EO147]
 gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis C6786]
          Length = 262

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPELCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L          + V ++ +++  
Sbjct: 61  HAEAREIVGRVEPARLVTLPDALFGQLSNVVNGVGLLLLVERPAPALPERVVDTSVVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      ++   
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDVDTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + ++    +  +  + G EG G+  + ++ AT    +  PG
Sbjct: 179 IERLAVPV---ALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAA+ L+     
Sbjct: 236 GMESLNVAAAAAICLFEQCRQ 256


>gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
 gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
          Length = 246

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +N  ++G+  V  A+         L+    ++ LA+  + A      PV+ VP + ID+
Sbjct: 3   EKNEMIFGIRAVIEAIEAGKEIDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERIDR 62

Query: 104 IVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I      HQG+    +P+           L     + L ++LD + D  N GAI R+   
Sbjct: 63  IT--RKNHQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R +N+   ++ +   GF+ I  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   +    +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKA 240

Query: 277 QNHF 280
               
Sbjct: 241 IEQR 244


>gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
 gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
          Length = 262

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 91/256 (35%), Gaps = 2/256 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             +L      +  +  +  D I   ++                L  + +S+  ++L+++ 
Sbjct: 65  CISLLRESCKMVQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P              
Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      SD    L +E    K A+++G EG G+    ++       + +    ++
Sbjct: 185 KGGFTVYSAELSDRSVRLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243

Query: 263 LNVSNAAAVALYITQN 278
           LN S AA+V  +    
Sbjct: 244 LNASVAASVIAWEMSK 259


>gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400]
 gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 247

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +     +  A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L  
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
 gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
          Length = 257

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 104/254 (40%), Gaps = 4/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K++    +KSR  +Q       G   V      P   + +L  ++    + + +  
Sbjct: 7   NQKVKELLQLQKKSRIRNQEGVFIAEGSRMVGE---TPKESLVRLYVSETYYKKHEEELK 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
             +  P + +       +   +     LA+      +      + +  ++VLD++ DP N
Sbjct: 64  KYNRQP-EVLTDTVFAYVSDTKTPQGILAVVRQMEYTMEEITGKGNPHILVLDNLQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I R+A A    GI+ +       +    +S  GA+  +P++ + ++ + +  +    
Sbjct: 123 LGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVEDMIEGIDNLKKNN 182

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +      D K   ++E      A ++G EG GLRP+  E A     + M G  ++LN +
Sbjct: 183 IRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRIPMEGQAESLNAA 242

Query: 267 NAAAVALYITQNHF 280
            AAAV ++      
Sbjct: 243 VAAAVLMFEASRQR 256


>gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 262

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  DANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             +L      +  +  +  D I   ++                L  + +S+  ++L+++ 
Sbjct: 65  CISLLRESCKMVQISEEVADSISDTKSPQGIFITVRHLDKILNLSTIDSSRQFIILENLQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P              
Sbjct: 125 DMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCCDTEEAITLLQ 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      SD    L +E    K A+++G EG G+    ++       + +    ++
Sbjct: 185 KGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SAES 243

Query: 263 LNVSNAAAVALYITQ--NH 279
           LN S AA+V  +       
Sbjct: 244 LNASVAASVIAWEMSKVRQ 262


>gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 245

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + + P R I  L        RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+      L              + + LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I TK  S   ++   K A GA E++P IR++NL   L+++       +  ++       
Sbjct: 124 VIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
 gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
          Length = 269

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 110/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
               +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  ID
Sbjct: 29  REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPELVRPSAID 87

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+R+A AF    I
Sbjct: 88  KLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 147

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+ 
Sbjct: 148 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDA 207

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY    
Sbjct: 208 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 263


>gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301]
          Length = 246

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    + I +L   K A   L +   D  + H    + VP + ++++  
Sbjct: 5   LIFGIRPVAEAIEAGKQ-IEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  +TA +    L  +        + L+++ D V D  N GAI RSA      
Sbjct: 63  -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + L+ + + GFQ +  +  S+K L
Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     +++GAE  G+  +  +       + + G I++LNVS AAAV L+      
Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQR 241

Query: 281 A 281
            
Sbjct: 242 I 242


>gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 273

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + +++Q ++QKSR   +     L G   +  AL    R I  L      L      A
Sbjct: 11  QNPEIRQLQHWSQKSRDRRKSGVFVLEGYRELGLALQGGYR-IRTLYYCPEILGDERRQA 69

Query: 86  NLPH-PFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVND 143
                     ++ P+    +  +      +  +E        L+    + L++V      
Sbjct: 70  LSDRAGCSWVSLSPEVYSHLAYRGKTEGVIGLVEAREHRLQDLELEGKNPLILVAQAPEK 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LR+A A S D +I                +S        +  ++  +AL  + 
Sbjct: 130 PGNLGALLRTADAASLDAVIV-ADLKGDLYNPNVIRSSVGCLFTVPVAQASTEEALSYLK 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +        S       +Q       A+ +G E  GL       A +   + M G I ++
Sbjct: 189 ARDIAVYAASLGGSVRYDQADYLGASAIAVGTEATGLTEAWTRQAEACVEIPMAGAIDSM 248

Query: 264 NVSNAAAVALYITQNHF 280
           NVS AAAV L+  +   
Sbjct: 249 NVSVAAAVLLFEARRQR 265


>gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 264

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 22/281 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++  I                  K + S ++KS+   + +     G   +S A
Sbjct: 1   MQQITSTQNSLI------------------KYLYSLSEKSKLRREHQEFLFEGKRELSLA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I QL      L   + + +    +P+  +     +K+  + +    LAL    
Sbjct: 43  IAAGYH-IKQLFFCPAILPAAEVERSFA-GYPLTEISLPVYEKLSYRSSTEGILALAQGK 100

Query: 121 LLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            LS + L   + + LL++ +    P NIGA+LR+A A   D +      +   +  + +S
Sbjct: 101 DLSLSALSFNKENPLLLIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRS 160

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + G L  +P    S                   +  +  P +      + A+ +G E  G
Sbjct: 161 SVGTLFTVPIATASTEELLHFLAQEDFTLY-CAALSASVPYDSVSYKGRTAIAVGTEDVG 219

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L P   E ++    + M G I ++NVS +AAV ++      
Sbjct: 220 LSPLWLEASSQNIIIPMRGKIDSMNVSVSAAVLIFEAVRQR 260


>gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
 gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
          Length = 246

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALESYREQLAAFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S+     +   +         S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMSSQALLKETKEAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SSLMAESADQLVHISMKGKAESLNVAVAAGILIFHL 245


>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
 gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
          Length = 270

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 109/253 (43%), Positives = 148/253 (58%), Gaps = 2/253 (0%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K  RN R     ++   +       + + LYG H V  AL    RK+  L AT+ A  R+
Sbjct: 7   KGPRNDRRLPPREAPPAEPFRRPSADVVVLYGAHAVREALRARRRKLLTLYATEGAAERI 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDH 140
              A        + V P+ +   +G E+VHQGL LE  PL +  + D    S +++VLD 
Sbjct: 67  APLAAEA-GLTPQIVDPRALTSRLGDESVHQGLLLEARPLPAAEIADIETKSGVVLVLDQ 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAILR+A AF+ D ++ T R SP  + VLAK+ASGALEH+  + + NL  ALQ
Sbjct: 126 VTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGALEHVLIVSVVNLARALQ 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G   +GL S++  PLE+    + IAL+LGAEGKGLR  T+E    +A L MPG I
Sbjct: 186 ELSQSGRLVVGLDSEAPAPLEETRLQNPIALVLGAEGKGLRRLTRERCDVLARLDMPGPI 245

Query: 261 KALNVSNAAAVAL 273
           K+LNVSNA AVAL
Sbjct: 246 KSLNVSNACAVAL 258


>gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 310

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 12/250 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96
                + E +   G + V   L          +     A  R+             +  V
Sbjct: 62  RSRIDEAETVL--GRNPVLECLRAGVPATALYVALGAEADERVTESVARAADSGISILEV 119

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150
           P   +D++     +HQG+AL+  P      D            LL+ LD+++DP N+GAI
Sbjct: 120 PRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDTPPALLVALDNISDPRNLGAI 178

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS  AF   G++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + I
Sbjct: 179 VRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGLRVI 238

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL +  +  ++    +D + +++G+EGKGL    ++    +  + M G  ++LN S AA 
Sbjct: 239 GLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASVAAG 298

Query: 271 VALYITQNHF 280
           V L       
Sbjct: 299 VVLAEIARQR 308


>gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
 gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
          Length = 247

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVEEVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +     +  A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L  
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
          Length = 247

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     E    + HL M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
 gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
          Length = 272

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/270 (30%), Positives = 143/270 (52%), Gaps = 9/270 (3%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           +K+    +   ++   KK     +K  +       ++++GVH V++AL N SRK  +   
Sbjct: 1   MKNKPRKQSFADN--TKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFF 58

Query: 74  TKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--R 130
           T+N   +L  DA  LPH    +   P+ IDK+V  ++VHQG+ L    L     + V   
Sbjct: 59  TRNGAQKLGLDAEHLPHYA--QLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLAN 116

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               +++LD V DP N+GA+ RS  AF    +I   R SP+    LAK+A GA++ IP +
Sbjct: 117 GEGPIVILDQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEV 176

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETAT 249
            + N++ A+  +   G+  +G+  +++  + Q       +A+++GAEG G+RP   +  +
Sbjct: 177 AVVNISRAVTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCS 236

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +A + +   +++LNVS+AA++ALY     
Sbjct: 237 QLAKISISPQMESLNVSSAASIALYEANRQ 266


>gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
 gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
          Length = 264

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 88/252 (34%), Positives = 143/252 (56%), Gaps = 7/252 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+         
Sbjct: 11  KWVVQKEQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQA-GI 69

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIG 148
             + V P+     + + +VHQG  LE  PL   +L        +  +++LD V DPHN+G
Sbjct: 70  TPEVVDPRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVG 129

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       +I  + ++  E+  LAKSASGALE  PY+R+ NL D+++++ + G+ 
Sbjct: 130 AILRSAEVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYL 189

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  +++  +E      ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNV
Sbjct: 190 VLGLDGEAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNV 249

Query: 266 SNAAAVALYITQ 277
           SNAAA+ALY ++
Sbjct: 250 SNAAAIALYASR 261


>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 11/238 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +    F+ G  +V  AL +     + +              ++P          + + 
Sbjct: 23  RYEEGLFFVEGTTSVLEALKSNFEIEYIV-------MGEGVKIDIPTGNFKIVHTTERVF 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K +      Q +              +++  + ++ D++ DP N+G I+R+A AF    I
Sbjct: 76  KKISDTVTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASAI 135

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  ++      K          L +        
Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIVTASQILLKLKQRGIKVFATHLKARKLVHECN 195

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +DK+A +LG E KG+     +       + M G  ++LNVS AA + LY +Q   
Sbjct: 196 I--SDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQR 249


>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 266

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 96/282 (34%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I  +   H                         +     + G   +  A
Sbjct: 1   MKFISSPSNEVIKEVIKLHDKN-------------------KRKKLNKCLVEGWRLIQDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETA 119
             N       +++      + +          +  V    ++KI   E     +      
Sbjct: 42  KENGISIEKLIISKSLWNKKREEILEKFSSCDLYIVEDNLMNKISLMETPPGIMGVFPLF 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 +   +++++++  D + DP N+G I+R A     D  I ++      +  + ++
Sbjct: 102 LSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVIRA 161

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++G++  +P     + T          ++ +       K   +E   +   LILG E  G
Sbjct: 162 STGSIFRVPIWISDDKTFVEFFKD---WKIVIADPKGSKLYFEENFKESFVLILGNEAWG 218

Query: 240 LRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ +   +    +  + +   + +LNVS AA+V L+  Q   
Sbjct: 219 IKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQR 260


>gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 247

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTID 102
           +  +  +YG H V  A+ +       +L    +    +        +  P + VP + ++
Sbjct: 3   EKLSEIVYGRHPVVDAIKSGWPVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERLN 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+ G    HQG+    +P+    L+           + L+++LD + D  N GAI RSA 
Sbjct: 63  KLAG--GNHQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSAE 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F    ++ + + S   +A   K+++GAL  IP  R  ++  A++ +   G +       
Sbjct: 121 VFGAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDLA 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   +        +AL++G+E +G+ P     A     +   G   +LN S AA + LY 
Sbjct: 181 ATASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 ATRQR 245


>gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
          Length = 316

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 15/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
            ++  H AK R  +   ++       +R   +  +  + G ++V  AL      +    Q
Sbjct: 40  EMRKGH-AKQRITNARTRQAAKRPV-ARRGGKGSSELVVGRNSVFEALREGVPANTLYVQ 97

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQG+ L+  P      +  
Sbjct: 98  QFIDSDDRVREALKLAADRGGIHLMEAPKPELDRMTNGL-NHQGVVLQVPPYEYAHPEDL 156

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 157 SAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
                P  R +NLT  L+     G   +GL++D +  L+     +  + +++G+EGKGL 
Sbjct: 217 TAARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQDVEALDGPLVIVVGSEGKGLS 276

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA V LY      A
Sbjct: 277 RLVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 316


>gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 256

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 5/256 (1%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
                   +R  ++ +S   K +         L   H V  A+    + +  ++ T   L
Sbjct: 2   KEKITSSQNRRVQEWRSLASK-KGRKATRTYLLESWHLVQEAIKA-QQPLTAIMGTAEQL 59

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           +      +LP   P+  +    + K +G     QG+           +D    +   + L
Sbjct: 60  SAHAD--SLPTDVPIYELTDS-LAKTIGDTGTPQGIFATAPMPDETAIDPKTATGAWLFL 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D+V DP NIG ++R+A A    G++  K  +      + ++  G+  HI  +        
Sbjct: 117 DYVQDPGNIGTMVRTADAAGLTGVVFGKGTASRFLPKVLRAMQGSQFHIQLVEADLHDWI 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                              +           A+++G EG G+ P  Q   T   ++ + G
Sbjct: 177 GAFTARQLPVYGTNLDPQAQDYRDVPALTNGAIVMGNEGNGMAPDLQRLTTQNLYIPIKG 236

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AA V ++
Sbjct: 237 QAESLNVAVAAGVVMF 252


>gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
           1021]
 gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 288

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 6/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +H  +  +    G+  V  AL+    KI  L+  K A  +   +  
Sbjct: 26  NPIVKDIRALTQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVEQV 83

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V  + I  I  ++     + +             +  +  + LD V 
Sbjct: 84  AAKTVARGGLVLEVNEKVISTITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVR 143

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GII     +   S    ++  G++  IP  R +       + 
Sbjct: 144 DPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIARANTEDFIRWQR 203

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +         + S      + K+  + L++G E  GL  +    A ++A +   G   +
Sbjct: 204 AAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRADS 263

Query: 263 LNVSNAAAVALYITQNHF 280
           LN++ A  + L+  + H 
Sbjct: 264 LNLAIATGIMLFEARRHL 281


>gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
 gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
          Length = 243

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG ++V   LN    +I ++    N      +        H   V     + + +I G
Sbjct: 4   VVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITARRHRIAVGKARLEKLSEIAG 63

Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+    + +    ++        ++ L+++L  + DP+NIGAI+RSA A + D 
Sbjct: 64  TTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVAADA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +      +A + K+++GAL H+   ++ +L   L+ + S  FQ +     +++   
Sbjct: 123 VVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAERNYT 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   ALI+G EG+GL     E   ++  L M G I++LNVS  A V LY      
Sbjct: 183 DIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMRQR 241


>gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 244

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  AL       K+F     +  L R           PV+ VP + ++++   +
Sbjct: 7   IYGIRALIEALKAGKTIDKVFLQKGLQGGLFRELMPLLQAAQVPVQYVPVEKLNRLT--K 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     +           + L +VLDH++D  N GAI+R+A      G
Sbjct: 65  KNHQGVVATLSPVDYHNFEDLVISVTESGVTPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  + + L 
Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY      
Sbjct: 185 AEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243


>gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
 gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
          Length = 251

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ ++   K                        +   +     L G H V  A
Sbjct: 1   MKYIQSLQNPQVKHWKKLTAK-------------------KEREKTFTYLLEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +++  +       W+       PV TV  +    +   E      A+    
Sbjct: 42  LK--EEVVTEIIVEEGVDLPNRWN---TEGVPVTTVTHEISKTLADTETTQGIFAVCRMK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +      +  +++D V DP N G ++R+A A   D +I  K  +   S  + ++A
Sbjct: 97  KQPSKI----IGRRYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAA 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  ++        +   +          ++     +    D  A+++G EG G+
Sbjct: 153 QGSHLHVGLLKGDLNMWIEKLNEAAVPVYGTA-LENGVTFREVNPGDAFAILVGNEGSGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P           + + G  ++LNV+ AA + +Y   
Sbjct: 212 HPDLLAQTEQNLSIPIFGKSESLNVAVAAGILMYDFA 248


>gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
 gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
          Length = 264

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 105/283 (37%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+   +E++                  K +    Q ++   +     L GVH + A 
Sbjct: 1   MKIITSVHNEQL------------------KFISKLLQNAKSRREHRATVLEGVHLLDAY 42

Query: 61  LNNPSRKIFQLLATKNAL--ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L+       ++   +N L    +    N      +  V    ++KI  +    + +    
Sbjct: 43  LDASHLP-KRVFVPQNRLANPEIQRIINRLPEHLITLVEHGKLNKIS-QLTEAEDIMTWV 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              +S +L    +    +VL+++ +  NIG ILRSA A     I+ +K  +   S  + +
Sbjct: 101 ELPISGSLPISDDC---VVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +A GA   +      +L D  +          +   ++     +Q      +A + G EG
Sbjct: 158 AAMGAHFLLKIHERVDLLDWRESFSGDVLATALTEKNNFSLYDKQLDLTKPVAWVFGNEG 217

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G+       A +   + M G  ++LNV+ AA + L+      
Sbjct: 218 SGVSADMLAQANATVKIPMIGATESLNVAMAATICLFEQMRQR 260


>gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
 gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
          Length = 234

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 64  PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118
             + I +L   +   +A  R   +        V  V    +D I  K A HQG+A     
Sbjct: 4   NPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAIS-KGARHQGVAGFIDA 62

Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A 
Sbjct: 63  SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           ++K A GA E +PYI ++NL   L+++  +G   IG     +  L      D+ A ++G 
Sbjct: 123 VSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPDRAAWVMGN 182

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 233

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 55  HTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           H V+ AL      K++     +        D        +   P +T+ ++    AVHQG
Sbjct: 2   HAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMTD-GAVHQG 60

Query: 114 LALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             L  A       +         ++ LL++LD + DPHN+G+ILR+A A +  G+I  K 
Sbjct: 61  FVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKH 120

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G         +      
Sbjct: 121 RAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQGTPSHKWNTA-G 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 180 KLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 232


>gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
 gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
          Length = 246

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L         FP      + I   +      QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
 gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
 gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
 gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           NZ-05/33]
          Length = 261

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MRHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +    +  +   +  +   +            + +V    + KI    +    +    
Sbjct: 43  LQSGGMPV-GVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISS-LSCADDILALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L  TL    +    +VLD V DP N+G +LRSA A     ++  +  + + S  + +
Sbjct: 101 DIPLGGTLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA         ++L   L +     F T             E      A + G EG 
Sbjct: 158 AGMGAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLY-GEDLCGPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
 gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
          Length = 247

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +     +  A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L  
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      A
Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
           salmonicida LFI1238]
 gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
           salmonicida LFI1238]
          Length = 247

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N FL+G+H   A L     +  ++   K     RL           F ++ +P +T+D  
Sbjct: 3   NEFLFGIHATKAVLERDPARFIEIFVLKGREDDRLLPIITELGELGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P           +     + L +VLD V DPHN+GA LR+A    
Sbjct: 63  A-KGANHQGIIARVTPAKQLNERDLDDIMDKTENPLFLVLDGVTDPHNLGACLRNADGAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++ K
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTAGEATK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 255

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 10/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++ +K   S   K +   +    F+ G   +     N  R I Q+  ++     +    
Sbjct: 7   QNQIFKDALSLQNK-KLRDKNGLFFVEGKKQIYEIPKN--RTIKQIFISEKYKNDVTNLK 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      V  +      K+   ++   G+            D ++NS L ++L+++ DP 
Sbjct: 64  N------VIMLSNHLFSKLSATKSPQ-GIMAIVEKKYYAVEDIIKNSGLFILLENIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF    +  +K  +   S    ++  G++ H+P I   N+ + L  M + 
Sbjct: 117 NLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFHLPIIDSINIKNTLNLMKNK 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  S   +K L      +K A ++G E  GLR +T+ +A ++  ++MPG  ++LN 
Sbjct: 177 KISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETENSADTLVKIYMPGNTESLNA 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA++ +Y    +  
Sbjct: 237 ATAASIIMYEAAKNRT 252


>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 230

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + +  A+ N  R I++L   + +      +    +    +      ++ +    A
Sbjct: 2   IIYGKNVIKEAVLN-KRPIYKLYLDEKSSDSKFINFLENNNISYELTNKGQLNNLTD-NA 59

Query: 110 VHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           VH G+  +        LD        Q  ++LD V DPHN+GAILRS  A + DG+I +K
Sbjct: 60  VHNGVVADVKDYQYLELDVVLDKTRRQRFLMLDEVQDPHNLGAILRSVEATNYDGVIISK 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           ++    + V+AK++SGA+EH+  I +SNL   + K+    F  +G + ++    ++  KN
Sbjct: 120 KHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIPKN 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + +I+G EG GLRP  ++    +  + M G + +LNVS A A+ LY 
Sbjct: 180 QNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYE 228


>gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
 gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
          Length = 247

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +A       A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K + +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL++GAEG+G+R  T+ET   + ++ M G +++LNVS A+ V L+      A
Sbjct: 186 TELDGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 258

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 145/252 (57%), Gaps = 7/252 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +     + ++L+G+H V  AL NP+R+  QL+ T NA A+L  DA      
Sbjct: 5   KWVVQKEQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKL-EDAIAEAGI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
             + V P+     +   +VHQG  LE  PL    L+ V     +  L++LD V DPHN+G
Sbjct: 64  APEVVDPRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       +I TK +S  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+ 
Sbjct: 124 AILRSAEVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYL 183

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++ + +E      ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNV
Sbjct: 184 VLGLDGEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNV 243

Query: 266 SNAAAVALYITQ 277
           SNAAA+ALY ++
Sbjct: 244 SNAAAIALYASR 255


>gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13]
          Length = 249

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            E  F+ G + V  AL +  R+I +L   +                    V+ VP + ID
Sbjct: 3   KEKEFIMGRNPVLEALKSN-REINKLWIAEGGQKGSIQQVIAMAKEANVLVQFVPRKKID 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+    A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR +   +A +AKS++GA+EHIP +R++NL   + ++   G    G  + 
Sbjct: 120 AVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKERGLWIFGTDAK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +   +  + LI+G+EGKG+    +E    +  L M G + +LN S AA++ +Y 
Sbjct: 180 GTVDYTKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTSLNASVAASLLMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VFRKR 244


>gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
 gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           WUE 2594]
 gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
          Length = 261

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            V +V    + KI         +    
Sbjct: 43  LQSGRKPV-GVYIPEGKMPSEEVRRLRAVVPEGKVFSVSDGILKKISS-LTCADDVLALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L A  +    +VLD V DP N+G +LRSA A     ++  +  +   S  + +
Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +     ++L   L       F T             E   +  A + G EG 
Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 314

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 24/287 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++++    +H  KL R  RD          S    + +   + G + V   L+  
Sbjct: 36  TPKAEDRVYH--SAHKRKLERQRRD----------SGRHEKEKADLVVGRNPVVECLHAK 83

Query: 64  -PSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            P+  +F  L T  +               PV  VP + +D + G   +HQG+ L+  P 
Sbjct: 84  VPAEALFVALGTAHDDRLSEAVTLANSKGLPVHEVPRRDLDTMTG-NGLHQGIGLKIQPY 142

Query: 122 LSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               +            + + +VLD++ DP N+GA++RS  AF   G+I  +R S   + 
Sbjct: 143 KYADVFDLMAGVKDRGQTGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTG 202

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALIL 233
           V  ++++G    +P  +  N+T  +++    G+  +GL +  +  L+      D + +++
Sbjct: 203 VAWRTSAGTAARLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIVV 262

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKG+    +E    +  +     +++LN S AA V L       
Sbjct: 263 GSEGKGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQR 309


>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
 gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
          Length = 261

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++    +    +     L GVH   A +    + +  +++ ++       
Sbjct: 6   SRDNALFKHLKALATSTHQRRKAGQSLLDGVHLAQAYVAALGQPVSCVVSERHYDHAEVA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +   V        L L            +    +++  D + D
Sbjct: 66  PLLAAVDSQRVVVLADVLFTQVSGVVNGIDLMLVIETPSGHLPARIEEDCIIL--DGLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA A            + + S    ++  GA  H+  +    +     ++ 
Sbjct: 124 AGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFHLNIVEHCTIDMLAPRLA 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +   +        +A I+G EG G+     E       +  PG +++L
Sbjct: 184 VPL---LATSSHADAAVFDTDLRGPVAWIVGNEGAGVSDAWMEHVARTVGIPQPGGLESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A A+ L+      
Sbjct: 241 NVGAATAICLFEAVRQR 257


>gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
 gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
          Length = 249

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D+   L 
Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   + ++ M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 252

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 15/243 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG---- 106
           +YG H +  AL    R    +++ K+                V+ V  + +D + G    
Sbjct: 7   IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAEQKGCKVRNVSREELDDLSGGVDH 66

Query: 107 ----------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                       +  +         +   L       L+++LD + DP N+GAILRSA  
Sbjct: 67  RGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLGAILRSADQ 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D ++  +R S  + AV+ K ++GA  H+P   + N+  A++ +   GF  +  +   
Sbjct: 127 FAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFW-VYGADMG 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                      K+A++LGAEG+G+    +E    +  +   G I + NVS A  + LY  
Sbjct: 186 GGSAWNFSLKGKVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVAGGILLYEC 245

Query: 277 QNH 279
           +  
Sbjct: 246 RRQ 248


>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
 gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
          Length = 270

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 12/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                   +   ++S    +       G   V  A    +  + ++ AT+ A  R     
Sbjct: 10  RSPRVVAARRLAKRS-FRGKERRFLAEGPQAVREA----AEHLVEVYATEEAARRHPGLL 64

Query: 86  --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV     + +  +         + L                +L+ VL HV D
Sbjct: 65  DDARARGVPVLGASEEVLAAMADTVTPQGVIGLCRFLDTGFADVLAARPRLVAVLAHVRD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D ++ T       +    +++ G+L H+P      + +A+  + 
Sbjct: 125 PGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSLFHLPVATGVPIEEAVAGLR 184

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +         L+ E          A + G E  GL  +T+  A ++  + + G 
Sbjct: 185 GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGK 244

Query: 260 IKALNVSNAAAVALYITQN-HFAK 282
            ++LN++ AAAV LY +     ++
Sbjct: 245 AESLNLATAAAVCLYASARAQRSR 268


>gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
 gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
          Length = 262

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 8/257 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  KK Q   +K ++     +N++L+G+H V  AL NP+R+  +L+ T NA  +L  DA 
Sbjct: 4   KPTKKPQWVIEKEQNKKAGVDNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKL-EDAI 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVND 143
                  + V P+  +  +   +VHQG ALE  PL   +L           +++LD V D
Sbjct: 63  AAAGITPEVVDPRRFNAPLDPNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRVTD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAILRSA       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ 
Sbjct: 123 PHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQ 182

Query: 204 SWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF      G + D+ +   Q  K+  +AL+LGAEG GLR KT+ET   +  +   G  
Sbjct: 183 NMGFVVLGLDGEAEDTIESCLQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASGGF 242

Query: 261 KALNVSNAAAVALYITQ 277
            +LNVSNAAA+ALY ++
Sbjct: 243 GSLNVSNAAAIALYASK 259


>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
 gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
          Length = 254

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R                    + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +         LA+    
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPTPQGILAVMALT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +       ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K+D  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQQDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
 gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
          Length = 247

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++      ++   +    A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQR 243


>gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
 gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
          Length = 245

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q +   +YG+  +  AL       K+F     +  L +           PV+ VP + ++
Sbjct: 2   QEQETQIYGIRALIEALKAGKTIDKVFLQKGLQGGLYKELMPLLQAAQVPVQYVPVEKLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++   +  HQG+    +P+     +           + L +VLDH++D  N GAI+R+A 
Sbjct: 62  RLT--KKNHQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  
Sbjct: 120 CTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVATTEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L  E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY 
Sbjct: 180 TNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VVKQR 244


>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 271

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 6/270 (2%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K         ++   K ++S  ++ +  ++       G   VS  L    +    ++A 
Sbjct: 1   MKQPLELITSPSNPLIKALKSL-ERKKERAETGLFLAEGARIVSEGLARGWQPETVIIAA 59

Query: 75  KNALARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLL-SPTLDAVR 130
             A      D           V   P + + KI  K+     +A      L   +L    
Sbjct: 60  DMAERPQISDLARAAAKAGARVVMAPERLMTKITQKDNAQSVVAAFRQRHLGVESLPKPA 119

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L  V DP N+G ILR+A      G+I          +  A  AS         
Sbjct: 120 GTPLYIALYEVRDPGNLGTILRTADCAGVSGVILI-GTCCDPYSFEAVRASMGSVFDVPF 178

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             ++           G      S +     +         +++G E  GL    +    +
Sbjct: 179 AHTDFDAFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNEQAGLPDWVEAACDT 238

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ + M G   +LN++ A+A+ +Y      
Sbjct: 239 LSLIPMRGGADSLNLAQASALMIYEAWRQR 268


>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
 gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
          Length = 314

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 117/274 (42%), Gaps = 11/274 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLA 73
            +        H+   + +  +             + G + V   L+     +  I  L  
Sbjct: 36  KAEDRVYHAAHKRANEKRRRDSGRHERKGDGTELVVGRNPVVECLHAKVPAAALIVALGT 95

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128
             +   +           P++ VP   +D + G   +HQG+ L+       +++      
Sbjct: 96  DNDERLQESVRIANSRGIPIREVPRHELDTMTG-NTMHQGIGLQIPSYKYSSVEDLIDSV 154

Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  L++ LD++ DP N+GA++RS  AF   G++  +R S + + V  ++++G    
Sbjct: 155 AKTGEPGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAAR 214

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R +N+  +L++    G+Q +GL +     L+       + +++G+EGKGL    ++
Sbjct: 215 LPVARATNMVRSLKQFQKAGYQIVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVRD 274

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++  + M G +++LN S AA V L       
Sbjct: 275 TCDTIMSIPMTGWVESLNASVAAGVTLSEFARQR 308


>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 262

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 7/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++    K     +     + G   V   L N    ++ +        +    ++
Sbjct: 11  NPIIKNVKELQSKKSTRQKESLFVVXGTRAVHD-LANTMEILYFI------ATQNIDXSD 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                   TV       I   +     +A+      S     ++ +   ++L+ + DP N
Sbjct: 64  YNPKTQWITVSDNVYTHISDTKTPQGLMAIVKQRNKSLNDFTIKQNGTYLILEGIKDPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+A     D I  TK      S  + ++  GA+  I  IR   +T  +       
Sbjct: 124 LGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKIDIIRNYEMTSYVDFFRENK 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +           L     +   A+++G E  G+   T+  A S   +     +++LN +
Sbjct: 184 VKIYATDLYQSNNLYTTKFDGSSAIVIGNEATGISEYTRAQADSTIKIPTRDNLESLNAA 243

Query: 267 NAAAVALYITQNHFA 281
            A ++ LY       
Sbjct: 244 IATSIVLYEVARQKN 258


>gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
 gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
          Length = 271

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 16/270 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75
           +++N++ YK+++  N++ +   Q      +   + G + +  A+ +       L     +
Sbjct: 1   MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------V 129
               +  +          + VP + +D    +   HQG+    AP     LD       +
Sbjct: 61  KGRLKSIFAIANEKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLEI 118

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P 
Sbjct: 119 NKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248
           IR+SNLTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+        
Sbjct: 179 IRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNEC 238

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + HL M G I++LN S AA + +Y    
Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268


>gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 239

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 5/237 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
             ++G + +  AL          +A  +   R            ++ V  Q ++++ G +
Sbjct: 4   FVVWGRNPIIEALRAGRDVEKIYVAHDSHPPRELIRLAKEKGVKLQKVSRQKVEELAGTK 63

Query: 109 AVHQGLA--LETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                +A     + +    L  + ++ +   +V DH+ DP N+G +LR+       G + 
Sbjct: 64  KTQGVVALLSPVSYVAPQELFSETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVGALI 123

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +  S   +  + K++SGA+ H+   +++NL   L++    G     +    K   E EI
Sbjct: 124 PRERSSPMNQTVVKASSGAIFHLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRELEI 183

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                AL+LG+E KG+     E +  +  + M G   +LNV +A A+A++       
Sbjct: 184 -VLPCALVLGSEDKGVSKSLLEVSDEVLSIPMKGKTTSLNVGSAGAIAMWEAVRKLI 239


>gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 249

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 97/242 (40%), Gaps = 11/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ++ F++G+  V  A+       KIF   A +  +          +      VP + +++ 
Sbjct: 2   KDDFIFGLRPVIEAIEAGKTIDKIFVQNALQGPIYAELKAILAKNKIRPNYVPVEKLNRF 61

Query: 105 VGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    + +           L     +  L++LD + D  N GAI R+A   
Sbjct: 62  T--RKNHQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFGAICRTAECV 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  ++ +   ++   K+++GA+ +I   + +NL   +  +   G      S  ++
Sbjct: 120 GIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGISVYAASEKAQ 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +      +  A+++G E  G+  +    A     L + G  ++LNVS A    LY   
Sbjct: 180 KLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAV 239

Query: 278 NH 279
             
Sbjct: 240 RQ 241


>gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J]
          Length = 245

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A  +  + I  +  T+        +       P+  V P+ + +
Sbjct: 22  HRKNSYLIEGWHLFEEAQKS-KQPILSVFLTEE------LENFKNSECPIYIVTPEVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P     L       LL   + V DP N+G ++R+A A   DG+I
Sbjct: 75  LTESPSPQGIVAEIAMPDSPLPLSQKGKYLLL---EDVQDPGNLGTMIRTADAACFDGVI 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++     +    +S  G+  H+P  R    +       +         S      +  
Sbjct: 132 LSEKTVDLYNQKTLRSMQGSHFHLPVWRTDVYSFCQTIQSNGVPVLATTLSKDSIDYKAL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +ND   L++G EG+G+  +    A  + H++MPG  ++LNV+ AA + ++
Sbjct: 192 PQNDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGILIF 242


>gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
 gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
          Length = 244

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  AL       K+F     +  L R           PV+ VP + ++++   +
Sbjct: 7   IYGIRALIEALKAGKTIDKVFLQKGLQGVLFRELMPLLQEAQVPVQYVPVEKLNRLT--K 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     +           + L +VLDH++D  N GAI+R+A      G
Sbjct: 65  KNHQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  + + L 
Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY      
Sbjct: 185 TEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243


>gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 436

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 3/257 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                     ++S    + +   + G ++V AA+   +     L  +  A       A  
Sbjct: 109 PRVVNAAKL-KRSAVRKKEKRFLVEGENSVEAAVATGAATDIFLTKSAAARFTDIVAAAK 167

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +  +    +          A+    L S         +L+ V    N+P N 
Sbjct: 168 AMGMYVHFIDEKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNA 227

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R A A   D ++        +S   A+S++G+L HIP  R  N+   +  +   G 
Sbjct: 228 GTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGL 287

Query: 208 QTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                ++D +  L       +   A + G E  GL  + Q  A     + + G  ++LN+
Sbjct: 288 AIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADYRVRIPIRGRAESLNL 347

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ L+ +  + AK
Sbjct: 348 ATAASICLFESSKYQAK 364


>gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 246

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTID 102
            E   LYG+H V AA    +  I  +   K                    ++ V  + +D
Sbjct: 2   SEPELLYGLHAVRAAAACDADAIEAVWVEKGRRDAKLVRVLRSLEGRGLRIQRVSRKQLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++               P           LD +     L+VLD V DPHN+GA LRSA A
Sbjct: 62  ELTEGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  +   + V+ K +SGA   +PY +++NL   L  +   G   +G + ++
Sbjct: 122 AGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDRGIWLVGAAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      +AL +GAEG+GLR  T+E    + H+ M G +++LNVS A  V L+  
Sbjct: 182 GAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEA 241

Query: 277 QNHF 280
               
Sbjct: 242 LRQR 245


>gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 237

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 9/233 (3%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            + V   L +    I ++L  +        +       PVK +  + +D+++     HQG
Sbjct: 5   KNVVKQLLQDGKT-IHEVLIQEGIRDTALENEIRKKQIPVKVLGRKKMDQLL--NGNHQG 61

Query: 114 LALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +A       +  L+            LL++LD + DPHN+GAILR+      DG+I  K 
Sbjct: 62  IAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKH 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  +AK ++GA++ +    ++NL  A++ +   G+  +G   ++ +   +   + 
Sbjct: 122 RNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKKQGYWVVGTDFENSRDYREGQYDV 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + L++G+EG G+    ++       L M G + +LN S AA + LY      
Sbjct: 182 PLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 234


>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 275

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 5/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++  ++K +  +        G   +  AL    +  + L+ ++          
Sbjct: 13  SNPTIKLLRGLDRK-KVRNDTGLFLAEGARLIVDALKFGWKPKYVLVGSETIDRPDIQHV 71

Query: 86  N---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                       T   + +  +  K+     +A       +         +  + L    
Sbjct: 72  ISQCAEIGARTLTTSSRILSAVSRKDNPQTIIAAFEQQTTTLEALETSGKKRFIALYEAR 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A A   DG+I  ++     S    ++  GAL     I +++ T+     
Sbjct: 132 DPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRATMGALF-SNNIVLASFTEFDNWR 190

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                +    S +     +Q   + K  +++G E  G+    +     +  + M G   +
Sbjct: 191 RKANIKMAAASVNGTMRHDQAEYSSKSVILMGNEQSGIPEAAENACDILIKIPMAGAADS 250

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A A+  Y    
Sbjct: 251 LNLAQATAIMTYEVWK 266


>gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 282

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 6/231 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG H V AAL NP R I   LAT+ A A  +  +  P       V  + +D++  ++
Sbjct: 55  YWIYGHHAVQAALANPERVIHDFLATREAAASFENASRKPQ-----IVDRERLDRLCERD 109

Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           AVHQG+ L   PL +  + D V     ++VLD V DP NIGAILRSA AF    ++   R
Sbjct: 110 AVHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQDR 169

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +P ES  +AK+ASGAL+ +P +R  NL+ ALQ + +  F  +GL +   +   +     
Sbjct: 170 NAPQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAGR 229

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++AL+LGAEG GLR  T+ET   +A ++MPG +++LNVSNAAAVALY    
Sbjct: 230 RVALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280


>gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925]
 gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925]
          Length = 260

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 26/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I  K +  I  +K     K                   + +Q     + G   V  A
Sbjct: 1   MNKIESKDNSLIKDIKKLSKKK-------------------YRTQEAKFLVEGFRFVQEA 41

Query: 61  LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     + L++          +    +     V  V    + ++         LA+  
Sbjct: 42  LKSTFEVPYVLISEDANEKCDSFNIYELIQDNTKVYLVRDDILKEVCDTNNPQGILAVV- 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  ++        +++D + DP N+G I+RSA A    G+ITTK      +    +
Sbjct: 101 ---NNKVMEIEDQEGFYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G++  IP +  ++  + L+ + S GF+ +  S D+K          K  + +G EG 
Sbjct: 158 STMGSIFKIPIVEDNDF-EVLKNLKSKGFKVVVSSLDTKNNFYDIDLTGKSIICVGNEGN 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+     E       + MPG  ++LN   AA++ +Y       K
Sbjct: 217 GVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQTQK 260


>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 97/253 (38%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+ +  N K +   +     L G+H V  AL    +    L+ +K        + 
Sbjct: 7   SNSRVKEWKKLNTK-KGRKRQNKYILDGLHLVKEALKVNKKVEELLITSK---FEHLNEI 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +P    V  +  +    I   +   QG+    +          ++    ++LD V DP 
Sbjct: 63  EIPDETKVIMISEEVSKSISETQ-TPQGIFGIVSIEEEKITYPQKDVGAWLMLDGVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A    G+I  +  +   +  + ++  G   HI  I  +            
Sbjct: 122 NIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVINDNLSGWIRHFKDMK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   ++  +      ++   AL++G EG G+  +  E  +   ++ +    ++LNV
Sbjct: 182 VPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTSINLYIPIT-NAESLNV 240

Query: 266 SNAAAVALYITQN 278
           + AA + ++  + 
Sbjct: 241 AVAAGILMFALKK 253


>gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
 gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
          Length = 259

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 100/257 (38%), Gaps = 4/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K     +   +         L GV  ++ A+ +    + ++L T+N L + + 
Sbjct: 4   SRENETVKLFAKLSGSKKQRDASGLFCLEGVRLIADAVRSGVT-LEKILITENCLQKYNH 62

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +    L     + T+  +   K+   ++     A+      +   D +++    + L   
Sbjct: 63  ELAEMLAINGKMNTISGELAGKLSDVKSPQGVFAIAKKLDKTLDTDTIKSGGCYLALCST 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP NIG ++R+A A   DG++         S  + +S  G+L  + +    +L      
Sbjct: 123 QDPGNIGTMIRTADALGIDGVLLH-NTCDIYSPKVVRSTMGSLFRMRFALCPDLLGLTAS 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +++ G  T     +   P+ +   +    L +G EG GL             + M G  +
Sbjct: 182 LNACGVDTCAAVVEDALPVTRASFSGPRVLYIGNEGNGLPDSIAFACARRITIPMRGNAE 241

Query: 262 ALNVSNAAAVALYITQN 278
           +LN ++AAA+ ++    
Sbjct: 242 SLNAASAAAILMWEMTK 258


>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 246

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQKLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
 gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
          Length = 247

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
          Length = 274

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 88/253 (34%), Gaps = 6/253 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    ++ +H        + G   +  AL         L+              
Sbjct: 8   NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYA 66

Query: 87  LPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    +  V    + K+  ++     +AL   P  +          L++V   +  
Sbjct: 67  ALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEK 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA A   + ++           V+    S  +        ++ ++ L  + 
Sbjct: 127 PGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRN--STGVVFSLRTLAASESEVLDWIK 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  +  ++    +      +A+ +G E +GLR    E A +   + M G   +L
Sbjct: 185 QHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSL 244

Query: 264 NVSNAAAVALYIT 276
           NVS +AA+ LY  
Sbjct: 245 NVSVSAALLLYEA 257


>gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
          Length = 241

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 8/239 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             ++YG +TV   L    R++ +++    +           +   ++        K+VG 
Sbjct: 2   KEWIYGKNTVRELL-TGPRQVHEVMIQNQSKNDDIVKLCRKNNIKMRMTDKNGFIKLVG- 59

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQG+           L+ +          LL++LD + DPHN+GAI+R+  A   DG
Sbjct: 60  NVNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGVDG 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K+ S   +A +AK ++GA++H+P  +++NL+  L  +   GF  +G   D+     
Sbjct: 120 VIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTDYR 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               N  + L++G+EG G+    +E       L M G + +LN S A AV LY   N  
Sbjct: 180 AVDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYNSR 238


>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
 gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
          Length = 257

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 103/259 (39%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K+++       +  +     + G H + A L N       L  +++       
Sbjct: 6   SKDNSRLKELRKVQHNKSYRQENNLTIIEGPHLLEAYL-NEKNDFLALFCSESFNKNYPE 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    +  +P    + I  +     G+        + +     +  + + LD V D
Sbjct: 65  YCKKGWEERIYILPDNFFNDIS-ELKTPIGILALIEIPQNDSYPNHFHDGMYLFLDKVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR++ A    GI  +++ +   S    +++ G    +P  +  ++++ +    
Sbjct: 124 PGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRASQGFQFQLPIYQNVDISNLISHGF 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S+    +   S           + K  LILG+EG+G+  K ++ A     L M   +++L
Sbjct: 184 SFVVADLNGQSVFDYN-----FSHKTILILGSEGQGVTTKLKDIAHDEISLPMMNNVESL 238

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ +AA+  Y   N F +
Sbjct: 239 NVAVSAAIIGYQFLNQFNR 257


>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
 gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
          Length = 254

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R                    + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +    A    LA+    
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPAPQGILAVMALT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +       ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K+D  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3]
 gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           ST3]
          Length = 242

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 9/240 (3%)

Query: 46  PENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V  +L      K++     +                 +   P +T+  +
Sbjct: 2   EHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L          ++ L+++LD + DPHN G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNGTP 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y    
Sbjct: 181 SHKWNTA-GKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 318

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 13/256 (5%)

Query: 37  NQKSRHTSQP--ENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPF 91
           N +  H         ++ G + V   L    P+  ++ +     +   +           
Sbjct: 61  NTRRTHRKSEDGGPEYVVGRNPVVECLRAEVPATALYVMTTIDADERVKEAVHTAGDRGI 120

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
            +  V    +D++     +HQGLAL+         +          ++ LL+ LD++ DP
Sbjct: 121 SILEVGKPELDRMS-PNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDP 179

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RS  AF   G++  +R S   +AV  ++++GA   +P     NL   L     
Sbjct: 180 RNLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAK 239

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +GL +     L+         +++G+EGKGL    +E   S+  + +   +++LN
Sbjct: 240 KGAQIVGLDAGGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLN 299

Query: 265 VSNAAAVALYITQNHF 280
            S AA V L       
Sbjct: 300 ASVAAGVVLSEFARQR 315


>gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
 gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
          Length = 257

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 23/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I   ++ ++ + K     K R+ +R Y                    L G H V  A
Sbjct: 1   MDRILSNQNSRVKAWKKLATKKGRQENRTY-------------------LLDGWHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + K   ++AT+  +A    D   PH  P   +  +    I G     QG+  E + 
Sbjct: 42  IKASA-KFHAVMATEEQMATHLPDV--PHGVPAFEISDEVAKHIAG-TNTPQGIFAEISL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                     +    ++LD++ DP N+G ++R+A A    G++  +  + + S  + ++ 
Sbjct: 98  PDKTFDPTYVHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +       A     +         ++S +       + + ALI+G EG+G+
Sbjct: 158 QGSQFHLEVLNGDLNEWADALTANNLSVYGSQLNESAQSYRAIEPSTQFALIVGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 218 SNELAEKTTTNLYIPIQGQAESLNVAIAGGILMF 251


>gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
 gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
          Length = 260

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++      ++   +    A       +       +  +  
Sbjct: 19  VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 79  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 256


>gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
 gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710b]
 gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
          Length = 260

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++      ++   +    A       +       +  +  
Sbjct: 19  VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 79  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 256


>gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei DM98]
 gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 14]
 gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 91]
 gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 9]
 gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei B7210]
 gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 7894]
 gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 112]
 gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei BCC215]
 gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
 gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 23344]
 gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           SAVP1]
 gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10229]
 gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 668]
 gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106a]
 gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10247]
 gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++      ++   +    A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 247

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++L  +   +   +    A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +      S  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis
           excentricus CB 48]
 gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis
           excentricus CB 48]
          Length = 322

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 17/288 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
             K   K        YA  +      +       K       +  +++G+H V AAL N 
Sbjct: 31  QSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDG-WIWGLHAVEAALKNQ 89

Query: 65  SRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           SR    +L  T +    L+  A       V+          + + AVHQG+AL   PL  
Sbjct: 90  SRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAVHQGVALNGPPLEG 149

Query: 124 PTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             L+        +   +L++LD V DP NIGAILR+  AF   G+I   R+SP    VLA
Sbjct: 150 DDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIMQDRHSPVMQGVLA 209

Query: 178 KSASGALEHIPYIRISN---------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           K+A+GA++ +P+ R++N             +    +   +    +   ++   Q      
Sbjct: 210 KTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVLEQQGWRQAGSPRA 269

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + +++G+EG+GLR    E    +  + MPG  ++LNVS+A ++ALY  
Sbjct: 270 LVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYEA 317


>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 266

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 12/238 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             + +  F+ G+++V  AL++  +  + ++         D +      F +  +  +   
Sbjct: 23  RYEEKLFFVEGLNSVKEALDSDFKVEYVVVG-------EDVEFEFKGDFKLIRIANKLFK 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           KI       Q +       +    D ++   + ++ D+V DP N+G I+R+A AF  D +
Sbjct: 76  KISD-TVTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAV 134

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  +N      K          L  +      +
Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLKGKGVKVFATHLKGEKFVHEVE 194

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A ILG E +G+     +       + M G  ++LNVS AAA+ LY +Q   
Sbjct: 195 I--DKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248


>gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 286

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 91/265 (34%), Gaps = 10/265 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALAR 80
             ++   K+++   ++ RH  +     + G   V+ AL       + ++      +A   
Sbjct: 5   SPHNPRIKRLRQLQER-RHRRRLGATLVEGRRFVAEALAAGRVVRQAVYTAAFASSAAGA 63

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL------SPTLDAVRNSQL 134
                       +  VP + + ++   E     +A                  A  +  L
Sbjct: 64  ALLRDLAAAGCQLAEVPDRLLAEVALTETPQGIVAEVAVDEPGPAGPSWWQGVAAASLPL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++ D V DP N+G +LR+A      G +              ++++GA   +   R  +
Sbjct: 124 ALLPDGVQDPGNLGTLLRAAEGLGAAGAVMVPGTVDPFHPRAVRASAGACLRLALARAGD 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +A +   + G       + +              L++G EG G+ P     AT    +
Sbjct: 184 AAEAARAARAAGLAVWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQATGRVAI 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            + G I +LNV+ A  + LY     
Sbjct: 244 PLAGGIGSLNVAMAGTILLYEAARQ 268


>gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
 gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
          Length = 247

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +     +A       A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TDRHQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K +  
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVYD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +AL+LGAEG+G+R  T+ET   + H+ M G +++LNVS A+ V L+      A
Sbjct: 186 TELDGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 247

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+ G + V  AL +     KIF    +++   +            V+ VP + ID + 
Sbjct: 3   QDFIIGKNPVIEALKSERDINKIFIAEGSQSGQMQQVIGLAKSAGVLVQFVPKKKIDGMA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQG+  + A      +D           +   ++LD + DPHN+G+I+R+A A  
Sbjct: 63  --EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPHNLGSIMRTADAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   +A +AK+++GA+E+IP +R++N+   + ++   G    G  +  K+
Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKERGVWIAGTDAKGKQ 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              Q      + L++G+EGKG+    ++    + +L M G + +LN S AAA+ +Y    
Sbjct: 181 DFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240

Query: 279 HF 280
             
Sbjct: 241 KR 242


>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4]
 gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4]
          Length = 260

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 98/256 (38%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   + SR   +     L G H +   +         ++A   +   ++ 
Sbjct: 8   SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   V      ++        G+           L      + +++L+ + D
Sbjct: 68  LIQELADIPTLMVTTLMFAELS-PVTTPTGILALVDTPQ---LPLPETLEFVLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A     +  ++  + + S    +   GA   +P +  S+L      + 
Sbjct: 124 PGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL----LALT 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    +    + L ++     +A ++G EG GL  K Q  A+   H+ M G +++L
Sbjct: 180 GNFPGETLATVMQGESLYEQDLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           N + A ++ ++     
Sbjct: 240 NAAAATSICVFERLRQ 255


>gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 249

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
            E+  ++G+H++  AL         +L   +   +L     L       V  VP Q   K
Sbjct: 2   EESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAEQNTIKVSYVPIQKFKK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              ++  HQG    T+ +     +        ++   L ++LD + D  N+GAILR+A  
Sbjct: 62  Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S   +    K+++GA  +IP  ++++L DAL  + S G + + ++  +
Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +   N  +AL++G EG+G++P   + A     L M G I++LNVS A  V LY  
Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILYEC 239

Query: 277 QNHFA 281
                
Sbjct: 240 LRQQN 244


>gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97]
 gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
 gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
 gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           R506]
 gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           V2475]
 gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
           AF2122/97]
 gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
 gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
          Length = 260

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +  A   + HR                +       G + V+AAL      + ++  T+
Sbjct: 5   RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            A  R +      H   V  V  +    +         +A+   P          + QL+
Sbjct: 52  VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            V   + +P N G ++R A A     +I   R     +    ++++G++  IP +   ++
Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
             A+  + + G Q +  + D +  L+       +  A + G E  GL  +    A    H
Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G  ++LNV+ AAA+ LY +     +
Sbjct: 231 IPMSGGAESLNVAAAAAICLYESARALGR 259


>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 249

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +                LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  +S  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDESAMPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 267

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 7/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DW 83
           +   ++++   Q+ +   +  + F+ GV  V  A+      +  L+     L      D 
Sbjct: 8   NPSIRQIRVLRQR-KERERSGHFFVEGVRLVGEAVALG--MVETLVVAPELLTSPFGQDL 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A       +  V  +    I  KE      A+     ++     + N+   + L    D
Sbjct: 65  VAQQAGHTRMIEVSAEVFASISQKEGPQGLAAVARQRWVNLADVRLTNAPGWVALLEPAD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A A    G++     +        +++ GA+     +  +   +      
Sbjct: 125 PGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGAIF-ALQVVRATFAEFAAWKR 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G   +G +  +    +  +    + L++G+E +GL P  Q     M HL M G   +L
Sbjct: 184 AQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQQALCDQMVHLPMCGRSDSL 243

Query: 264 NVSNAAAVALYITQNH 279
           N++ A  V LY   + 
Sbjct: 244 NLAVATGVLLYELLSQ 259


>gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 320

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 12/258 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHP 90
           S   +    ++  +  + G ++V  AL      +  +        +   +          
Sbjct: 65  SAPSRGPRRTKGSSEIVAGRNSVVEALRADI-PVSTMFVATRIDSDDRVKEALKLATERG 123

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPH 145
            P+   P   +D++    AVHQGLAL+  P                  L++ LD + DP 
Sbjct: 124 LPILEAPRGELDRLTD-GAVHQGLALQVPPYEYADPRDLVDPEQPGVPLIVALDGITDPR 182

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RS  AF   G++  +R S   +A   K+++GA   IP  +  NLT AL+     
Sbjct: 183 NLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDFKRA 242

Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GF  +GL  D    L       + + ++ G+EGKGL    +ET   +  + M   +++LN
Sbjct: 243 GFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVESLN 302

Query: 265 VSNAAAVALYITQNHFAK 282
              A  VALY       +
Sbjct: 303 AGLATGVALYEIARQRRR 320


>gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 316

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++  K  H AKL R            + S    +     + G + V   L+  
Sbjct: 38  TPKAEDRVYHAK--HKAKLERE----------RRNSGRHDKETAEMVVGRNPVIECLHA- 84

Query: 65  SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +           +        P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATSLYIVQGTRNDARLSEAVAMCNTRNIPILEVQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +          +   + ++LD++ DP N+GA++RS  AF   G+I  +R S S +
Sbjct: 144 YKYADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R++N+T  +Q     G+Q +GL +  +          D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +E   ++  + M   +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQR 311


>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 246

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMIQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
 gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
          Length = 249

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 97/247 (39%), Gaps = 14/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQT 100
            +     + G + V  A       I +L                        +  V    
Sbjct: 2   REEGYTLI-GRNPVLEAFRAGKT-IDRLFIQDGLKDGPILSILREAKKQDLVIDFVKKSR 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D++   E  HQG+    +      L+           +    +LD + DPHN+GA++R+
Sbjct: 60  LDEMSSGE-THQGVIAYLSAYEYAPLEELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      G+I  KR +   +A +A++++GAL +    +++NL   ++++   G   +   
Sbjct: 119 ANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCG- 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               + + +      I L+LG EG+G+    +ET    A + M G + +LN S A  V  
Sbjct: 178 DMRGESMYKLNLTGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLA 237

Query: 274 YITQNHF 280
           Y      
Sbjct: 238 YEIVRQR 244


>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
 gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
          Length = 254

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 102/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R                    + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +                 V  + +D +         LA+    
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAANKEISTFLVSDEVMDAVSDLPTPQGILAVMALT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +       ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 AEGTPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K+D  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQKDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +         ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 248

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F+ G   V  AL         L+     ++ L              V+ VP + +D    
Sbjct: 4   FIEGKRPVIEALRTGVPIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63

Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
               HQG+  + A                + +      L+++LDH+ D  N+GA+ RSA 
Sbjct: 64  -RGSHQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +  
Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +Y 
Sbjct: 183 ASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242

Query: 276 TQNH 279
               
Sbjct: 243 WLRQ 246


>gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
 gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
          Length = 252

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A  P       V  + +  +   +   QG+      
Sbjct: 46  VQAGVT-IEKIFALESYRDQL---AAFPQTV---WVSEEILRDLADSQ-TPQGIVAIVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGLPDLRQGKFLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+   T       S         S   K   +    +   L++G EG+G+
Sbjct: 156 QGSHFHLPIYRMPVATFVEGAKKSDLPILATTLSRESKDYRELSPLEDFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 216 SSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249


>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
 gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
 gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21193]
 gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 246

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PHYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
 gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
          Length = 248

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F+ G   V  AL         L+     ++ L              V+ VP + +D    
Sbjct: 4   FIEGKRPVIEALRTGVPIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63

Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
               HQG+  + AP               + +      L+++LDH+ D  N+GA+ RSA 
Sbjct: 64  -RGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +  
Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K  + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +Y 
Sbjct: 183 AKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242

Query: 276 TQNH 279
               
Sbjct: 243 WLRQ 246


>gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 296

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 94/306 (30%), Gaps = 48/306 (15%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+          +   K++     + R   +     + G   +  AL      + 
Sbjct: 4   EKISSLQ----------NPRVKQLVKLRDR-RPRDEAGVFLIEGFREIRRALE-KRVPLR 51

Query: 70  QLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +L          +              +  +      K+  +E    GL           
Sbjct: 52  ELYYAPEWFLGENEPALIAQAEAAGAQLFELTKSAFAKVAYRER-PDGLLAVAPQWKRTL 110

Query: 126 LDAVR------------------------------NSQLLMVLDHVNDPHNIGAILRSAV 155
            D  +                               +  ++V++ +  P N+G ILRSA 
Sbjct: 111 QDLDKIVAGSGGPGRPGSTTPATTSAVGAGAPDLQRAPFILVVEAIEKPGNLGTILRSAD 170

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A  CD +I                AS  +     + ++     L  + + G +TI  +  
Sbjct: 171 AAGCDAVIVC-DPVTDIFNPNVVRASTGVLFSVPLVVAESAPVLAWLRAQGVRTIATTPA 229

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++K          +A+++G+E  GL     +       + M G   +LNV+ A  + L+ 
Sbjct: 230 AEKLYTDADLRGPLAIVMGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLFE 289

Query: 276 TQNHFA 281
                A
Sbjct: 290 AVRQRA 295


>gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 260

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 8/263 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +  A   R++  +K+++   + SR   +     L G H ++A L         L+  ++ 
Sbjct: 2   TETAIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTP-HTLVRAESC 60

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
            A                VP     ++         LA          +D      L++V
Sbjct: 61  DAARLAAVADCRQAKTVVVPDALFAELAPVATPTGVLAEAAWLTPQAPVDLA----LVVV 116

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+GA+LR+A A      + +K    + S    +   GA   +P    ++   
Sbjct: 117 LEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLPMQLAADP-- 174

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
               +  +   ++ L+ ++   L         AL++G EG GL   T   AT+ A + MP
Sbjct: 175 -GSWLRDFSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMP 233

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G +++LN S A AVA++      
Sbjct: 234 GRVESLNASAALAVAVFEALRQR 256


>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 16/252 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+     +K ++  + +   + G H +  A       +  +L              
Sbjct: 8   NAKVKQWAKLKEK-KYREKDQRFLVEGEHLIEEAARAG--LVEAVLVEIGKAHTFVEY-- 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV  V    + K+  + +V     +    +           + ++VLD V DP N
Sbjct: 63  -----PVYEVTKDILRKL--ESSVSGTWIMAVCRMPQY--HDAEFGKRVIVLDDVQDPGN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+AV+F  D ++ +       +  + +S  GAL HIP IR       +       
Sbjct: 114 VGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIRGDVQAMLMSLKQKGN 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                   ++    E  +  D  AL+ G EGKG+  +    A +   + M    ++LNV+
Sbjct: 174 RILATSLHNASALREIAV-PDAFALVFGNEGKGVSEEVLRLADTHVFIEMH-TFESLNVA 231

Query: 267 NAAAVALYITQN 278
            AA + +Y  + 
Sbjct: 232 VAAGICMYAFKK 243


>gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
 gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
          Length = 256

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + + +G+H V   L    + +  L   K   +   +           PV  +P   +D++
Sbjct: 2   SEYAFGLHAVEELLRRQPKSVSGLWVQKGRDDGRMQALLALAASTDTPVSRLPRVKLDEL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA----------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           V          L         L                 L++VLD V DPHN+GA LRSA
Sbjct: 62  VSGRHQGVVAQLGENTEEQADLRWSEEQLARAVTYNPRALVLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     ++  K  +   +AV+ K A GA E +P +R++NL  +L  + + G    G + 
Sbjct: 122 DAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDALKAAGVWIYGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ + L        +AL++GAEG G+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 182 EAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
             +   
Sbjct: 242 EIRRQR 247


>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris BisA53]
          Length = 276

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 115/236 (48%), Positives = 151/236 (63%), Gaps = 1/236 (0%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + R         LYG HTV AAL NP R+I  L  T+NA  RL  D N+P     + V P
Sbjct: 30  RDRGERPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRP 88

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             ID+ +G +AVHQGL  E  PL SP +D++    +++VLD + DPHN+GAILRSA AF+
Sbjct: 89  SAIDQRLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFA 148

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+ T R+SP  + VLAKSASGALE +P + + NL  AL +++  GF TIGL S+   
Sbjct: 149 VKAIVITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDD 208

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L        +AL+LGAEGKGLR  T++T  ++A L +PG IK+LNVSNAAA+ALY
Sbjct: 209 DLASIELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALY 264


>gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 248

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 10/240 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+ + S   KI+     + +L                TVP + ++++  K 
Sbjct: 7   IFGLRAIIEAIESGSTINKIYLQKGLRGSLYYELDKLIKDSKIATSTVPVEKLNRLS-KN 65

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG   + +P+    L+               ++LD ++D  N GAI+R+A     +G
Sbjct: 66  SNHQGAVAQISPIDFYDLETLLDDTLEAEKVPFFLILDQLSDVRNFGAIIRTAECTGVNG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  S   +A   K+++GA   +P  ++ ++ DAL  + +   +T+  +  +   + 
Sbjct: 126 IIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASNIKTVAATEKTDSSIY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               N  IA+I+G+E +G+ P   +     A L + G I++LNVS A  V LY T    +
Sbjct: 186 DVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVSVACGVFLYETVRQRS 245


>gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 247

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
 gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
          Length = 260

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 97/256 (37%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   + SR   +     L G H +   +         ++A   +   ++ 
Sbjct: 8   SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   V      ++        G+           L      + +++L+ + D
Sbjct: 68  LIQELADIPTLMVTTLMFAELS-PVTTPTGILALVDTPQ---LPLPETLEFVLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A     +  ++  + + S    +   GA   +P +  S+L      + 
Sbjct: 124 PGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL----LALA 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    +    + L  +     +A ++G EG GL  K Q  A+   H+ M G +++L
Sbjct: 180 GNFPGETLATVMQGESLYAQNLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           N + A ++ ++     
Sbjct: 240 NAAAATSICVFERLRQ 255


>gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 246

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 436

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 3/257 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                     ++S    + +   + G ++V AA+   +     L  +  A       A  
Sbjct: 109 PRVVNAAKL-KRSAVRKKEKRFLVEGENSVEAAVATGAATDIFLTKSAAARFTDIVAAAK 167

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +  +    +          A+    L S         +L+ V    N+P N 
Sbjct: 168 AMGMYVHFIDEKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNA 227

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R A A   D ++        +S   A+S++G+L HIP  R  N+   +  +   G 
Sbjct: 228 GTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGL 287

Query: 208 QTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                ++D +  L       +   A + G E  GL  + Q  A     + + G  ++LN+
Sbjct: 288 AIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADYRVRIPIRGRAESLNL 347

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ L+ +  + AK
Sbjct: 348 ATAASICLFESSKYQAK 364


>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 293

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 22/291 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--------------- 45
           M+ +      K    +     +        K  +   +   H  +               
Sbjct: 1   MSRMDSS---KTHQSRGPTAKRSETKPPRSKPWEGQGESRPHRPKSAPASQEKNPSPFRQ 57

Query: 46  --PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
             P+ + L+G H V  AL +  R    L AT+ A  +L  D +         V  + + +
Sbjct: 58  SSPDVILLHGFHAVREALRSDQRTCLALYATEAAAEKLAPD-SKAAGLAPHIVTAEDLSR 116

Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +G + VHQG+ LE  PL    + +    S +++VLD + DPHN+GAI+R+A AF  D I
Sbjct: 117 RLGSQTVHQGVLLEARPLEPLDITEIPTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAI 176

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT+R++P+   VLAK+ASG LEH+  + + NL  AL+ +    +  +GL S ++    Q
Sbjct: 177 VTTERHAPALGGVLAKAASGGLEHVQIVPVVNLARALETLGRLNYLRVGLDSAAEADFTQ 236

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 IAL+LG EG GLR  T+E    +A L MPG IK+LNVSNA AV L
Sbjct: 237 LPLQRPIALVLGGEGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287


>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 246

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 99/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I   L                    V  +  +  + + G     QG       
Sbjct: 42  YQSG--IIITQLFAIEPARLDQQIIAYAQ--EVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 244

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 100/253 (39%), Gaps = 16/253 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+   + +K +H  + +   + G H +  A       +  +L              
Sbjct: 8   NAKVKQWAKYKEK-KHREKDQKFLVEGEHLIEEAARAG--LVEAILVEAGRGHDFLQY-- 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV  V P+ + K+  + ++     +    +           + ++VLD V DP N
Sbjct: 63  -----PVYEVTPEILKKL--QSSISGTWIMAVCRMPQYN--TADYGERVIVLDDVQDPGN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+RSA++F  D ++ +       +  + +S  GAL H+P IR   +    +      
Sbjct: 114 VGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIRGEVVDMLQELKRKGI 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                   ++    E    +++ AL+ G EG G+       A +  ++ M    ++LNV+
Sbjct: 174 RILATSLRNATPLHEIA-ASERFALVFGNEGSGVSEDVLYLADTHVYIEM-DTFESLNVA 231

Query: 267 NAAAVALYITQNH 279
            AA + +Y  +  
Sbjct: 232 VAAGICMYTLKRR 244


>gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
 gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
          Length = 274

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 116/261 (44%), Positives = 158/261 (60%), Gaps = 4/261 (1%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLA 73
              Y+  +      K       +     + ++   + LYG HTV+AAL NP RKI +L A
Sbjct: 3   KREYSSFKGKSSHRKPPHGRGGRPAWRDRDDHNAPVILYGWHTVTAALLNPKRKIRKLFA 62

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           T+NAL RL  +     P P + V P  ID+ +G +AVHQGL  E  PL +  +  +    
Sbjct: 63  TENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPLPALDIAKLPQDG 121

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD + DPHN+GAILRSA AF+   ++TT R+SP  + VLAKSASGALE +P + + 
Sbjct: 122 IVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTVQ 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL +M   GF T+GL S+    L +      +AL+LGAEGKGLR  T+ET  ++A 
Sbjct: 182 NLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVAR 241

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L MPG IK+LNVSNA A+ALY
Sbjct: 242 LDMPGEIKSLNVSNATALALY 262


>gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
 gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 246

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPIMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 246

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++    LD  A  P       V  + +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKVFALESY---LDQLAAFPQTV---WVSEEILLDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+   T  ++   S         S   K   +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMPVATFVVEAKKSNLPFLATTLSRDSKDYRELSSLENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 307

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 130/289 (44%), Gaps = 17/289 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++ +    ++ AK  +  R   +     + S         ++ G + V  AL   
Sbjct: 22  TPKAEDRTYH--KAYRAKQDQGPRKGTRPPHGAKPSSTGRGAAPDWVVGRNPVLEALQAN 79

Query: 65  SRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              + +    + +      R  +     H   +  VP Q +DK+    AVHQG+AL+  P
Sbjct: 80  -LPVRRAYVAEGSEHDDRLREIFKYAAEHSLSLLQVPRQELDKLTD-GAVHQGVALQLPP 137

Query: 121 LLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                +D           N  LL+  D + DPHN+GAI+RSA AF  DG+I  +R S S 
Sbjct: 138 YEYADIDEVATKALGRDDNHGLLVACDGITDPHNLGAIIRSAAAFGADGVIIPERRSASL 197

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIAL 231
           +A   K+++GA   +   +++NL   L+++   GF   GL+ ++   +      N  + L
Sbjct: 198 TASAWKASAGAAARLRVAKVTNLNRGLERLAKAGFVIAGLAGEADTDIAGIPGVNGPLVL 257

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G+EG GL    +E    +  + +   +++LN S A A+ALY      
Sbjct: 258 VVGSEGAGLSRMVREHCDVLVSIPITSEVESLNASVATAIALYEVSRAR 306


>gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           weihenstephanensis KBAB4]
          Length = 247

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL    R I ++L  + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRAG-RDINKILVAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+               ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RKR 242


>gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 279

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74
           + R N +   + ++  +      +       E+ F++G H V+ AL      K+F     
Sbjct: 7   RKRPNKKTAGRSEARQENRPDRRKEAAGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130
           +        +       PVK VP Q +D +   + VHQG+ L   P    TLD      +
Sbjct: 67  RGEKIDRLKEMAREQAVPVKWVPKQKLDTMS-NQGVHQGMILAITPYQYLTLDELLAQTK 125

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++ K+++GA+EHIP  
Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R++NLT A+Q++   GF   G                 + LI+G EG+G+    ++    
Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           M  + M G +++LN S AA + +Y       
Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275


>gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
 gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
          Length = 302

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 11/264 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALAR 80
           +  RD  +     +   +   P+  F+ G    + AL         L+A       AL+R
Sbjct: 32  KGQRDRTQAARPQRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSR 91

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLL 135
           L  D N      +K VP   +D +    A HQG+ALE        +  +         L+
Sbjct: 92  LVDDLNAA-GVRIKYVPRAQLDALSSHGA-HQGIALEVGNFPYADVADILDRAGDGPALV 149

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLDHV D  N GAI+RSA      G+I   + +   +    K+++GA+ H+P  ++ N+
Sbjct: 150 VVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNI 209

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL  + + GF   G S  ++          ++AL++G+EG G+     E    +  L 
Sbjct: 210 ARALDDLKAAGFWVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLP 269

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
             G+ ++LNV+ A     +     
Sbjct: 270 QRGMTESLNVAQATTALCFEWLRR 293


>gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
          Length = 260

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +  A   + HR                +       G + V+AAL      + ++  T+
Sbjct: 5   RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            A  R +      H   V  V  +    +         +A+   P          + QL+
Sbjct: 52  VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            V   + +P N G ++R A A     +I   R     +    ++++G++  IP +   ++
Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGKCLRASTGSIFAIPVVVAPDV 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
             A+  + + G Q +  + D +  L+       +  A + G E  GL  +    A    H
Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G  ++LNV+ AAA+ LY +     +
Sbjct: 231 IPMSGGAESLNVAAAAAICLYESARALGR 259


>gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 250

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTI 101
           + E   L G   V  A  +  + + +L   +                   P+  V    +
Sbjct: 2   RDEQFTLIGRQPVLEAYRSG-QTVDRLFVQEGLREGTLSSILREARRQSTPLDFVKRSRL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D++ G E     +A   A       D             L++LD + DPHN+GAI+R+A 
Sbjct: 61  DEMSGGENHQGVMAYLAAYRYYEISDMLSDAREKGEDPFLILLDGIEDPHNLGAIIRTAN 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G++  KR +   +A  AK+++GAL +    +++NL+  ++++   G   +     
Sbjct: 121 LAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEELKKEGIWFLCA-DM 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + + ++     IAL++G EG+G+    +E+    A + M G I +LN S A  V  Y 
Sbjct: 180 EGESMYRQRLTGPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLAYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 IVRQR 244


>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 262

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 9/256 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWD 84
           +   K ++S  +  +         + GV  V  AL N +     L   +   +  R    
Sbjct: 11  NHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEAL-NFATPSLLLYVPEQLASTERGQQL 69

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +L    P        I   +      QG+          +    +++ L+++LD V DP
Sbjct: 70  LDLIAQLPNAFATTPAILAGLSDVETPQGIIAVIPMPQFTS----QSASLILMLDGVQDP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LRSA A     ++     +   S  + +S  G    +P +   N  +    +  
Sbjct: 126 GNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNW-ETALPLIE 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              Q      DS    +Q        LI+G E  G+   T   + S   + M G +++LN
Sbjct: 185 HCQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYS-STITIPMLGSLESLN 243

Query: 265 VSNAAAVALYITQNHF 280
            + A +V L+      
Sbjct: 244 AAVAGSVLLFEAARQR 259


>gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341]
 gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341]
          Length = 271

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 16/270 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLL--ATK 75
           +++N++ YK+++  N++ +   Q      +   + G + +  A+ +       L     +
Sbjct: 1   MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------V 129
               +  +          + VP + +D    +   HQG+    AP     LD       +
Sbjct: 61  KGRLKSIFAIANEKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLEI 118

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P 
Sbjct: 119 NKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248
           IR+SNLTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+        
Sbjct: 179 IRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNEC 238

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + HL M G I++LN S AA + +Y    
Sbjct: 239 DFLYHLPMLGKIQSLNASVAAGIIMYERIK 268


>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 246

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 11/259 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K++++  ++S    +     + G   V   +      I  +    +A  R      L 
Sbjct: 9   RVKQVKALGRRS-ARDKAGLFLVEGRQAVRELIRFAPMSIRDVYLDADAAERHPDLRELA 67

Query: 89  HPFP----------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +           V    PQ +  +   E     +A+              + + +++ 
Sbjct: 68  GEWADGAAAGERRFVHDCSPQVLAAMCDTEQPQGIIAVARPIDRPLADVLAGSPKFVVIC 127

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
            +V DP N G ++R A A   D +I +       +  L +S+ G+L H+P  R S++ + 
Sbjct: 128 TNVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVRSSVGSLWHLPISRGSSIEEI 187

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                + G          +  L         A ++G E  GL P+ +E    +  + + G
Sbjct: 188 FAACRAAGLTLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYG 247

Query: 259 IIKALNVSNAAAVALYITQ 277
             ++LN++ AA V LY + 
Sbjct: 248 HAESLNLAMAATVCLYASA 266


>gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 272

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 21/279 (7%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           IS  +++KI  +                         R   +     + G   +  A++ 
Sbjct: 12  ISSLQNQKIKDVVRLRD-------------------RRQREKTGKFLIEGYRELLRAVDA 52

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                   + +K  L   +         PV +       KI  ++     LA+      +
Sbjct: 53  GFEIESLFICSKLFLGSHETALISRCGDPVYSCAEHVFRKISYRDRPDGLLAVAPQKRRA 112

Query: 124 -PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              L     S   +V + +  P N+G ILRS+ A   DG+I   R +   +  + +++ G
Sbjct: 113 LKQLPTPDGSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVG 172

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L  +P +      + L+ +       +  +  ++    +      +A+++G E  GL  
Sbjct: 173 TLFTVPVLEAEGE-ETLKWLKERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSE 231

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E A     + M G+  +LNV+ A  + LY      A
Sbjct: 232 LWMEHADIQVRIPMMGVADSLNVATATTLLLYEAIRQRA 270


>gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 273

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 101/268 (37%), Gaps = 7/268 (2%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF-----QLLA 73
           H       +   K+M    +KSR  +Q +   + GV  +  A++     +       +L+
Sbjct: 4   HPVIQSAQNPKVKEMLRLKEKSRARTQAQKFIIEGVRELELAIDCQYNILEFYYEPTILS 63

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNS 132
                  L   A  P       +     +K+  + +    +A+      + + L     +
Sbjct: 64  ADALSGILKKLAAQPIAVSPTILSGAAFEKLAQRSSTEGIIAVAATKSHALSALKVTAKN 123

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V +    P NIGA+LR+A A   D +I     +   +  + +S+ G +  +     
Sbjct: 124 PLYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRSSVGGVFTVAVAMG 183

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++  + L  + +        +  + KP  +       A+++G E  GL     E +    
Sbjct: 184 TSK-EVLDFLQAAKANVYAAALQASKPHTEVSYTGTTAIVVGTEATGLEAIWLEQSNQNI 242

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G I ++NVS AA + ++      
Sbjct: 243 RIPMRGKIDSMNVSVAAGILIFEAIRQR 270


>gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
 gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
          Length = 277

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 91/274 (33%), Gaps = 10/274 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
                   +++R  +   +     +   +     + G+    + + +  R  F     + 
Sbjct: 2   KKLERITSKSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWRIHFAFFTDRG 61

Query: 77  ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDA 128
             +       +       PV  +  +    +   +     L        T         +
Sbjct: 62  GESLAAAQLVEKLCERRTPVYLISDELCAALSDTDTPQGVLLIAERDPGTPLKRFMRPCS 121

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + ++A G L ++ 
Sbjct: 122 NEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMN 181

Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +     D LQ               D  +           A++ G E  G+       
Sbjct: 182 VAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILAR 241

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A    ++ M G +++LNVS AAAV LY       
Sbjct: 242 A-RRVYVPMFGPVESLNVSAAAAVILYECVRQRI 274


>gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 279

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74
           + R N +   + ++  +      +       E+ F++G H V+ AL      K+F     
Sbjct: 7   RKRPNKKTAGRSEARQENKPDRRKEAAGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130
           +        +       PVK VP Q +D +   + VHQG+ L   P    TLD      +
Sbjct: 67  RGEKIDRLKEMAREQAVPVKWVPKQKLDTMSD-QGVHQGMILAITPYQYLTLDELLAQTK 125

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++ K+++GA+EHIP  
Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R++NLT A+Q++   GF   G                 + LI+G EG+G+    ++    
Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           M  + M G +++LN S AA + +Y       
Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275


>gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 265

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 99/251 (39%), Gaps = 11/251 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKT 95
           +  +     ++ F++G+  V  A+       KIF   A +  +          H      
Sbjct: 11  ESGQAEPNKKDDFIFGLRPVIEAIEAGKTIDKIFMQNALQGDIYYELKTLLSKHNIRPNY 70

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIG 148
           VP + +++       HQG+    + +   +       L     +  L++LD + D  N G
Sbjct: 71  VPIEKLNRFT--RKNHQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILDRLTDVRNFG 128

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A       II  ++ +   ++   K+++GA+ ++   +  NL  A+  +   G Q
Sbjct: 129 AICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAVDFLQQSGLQ 188

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               S  ++K +         A+++G E  G+  +    +     L + G  ++LNVS A
Sbjct: 189 VFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 248

Query: 269 AAVALYITQNH 279
               LY     
Sbjct: 249 CGAILYEAVRQ 259


>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
 gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
          Length = 323

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 18/283 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNPS---RKI 68
            +   K  + +R    M     K R   +       +  + G + V  AL +        
Sbjct: 38  KAEDRKKHKANRIANAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPATTLY 97

Query: 69  FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            Q     +   R             +   P   +D++      HQGL L+  P      +
Sbjct: 98  VQQFIDNDERVRDALKLAGERGNINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPE 156

Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   K++
Sbjct: 157 DLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKG 239
           +G     P  R++NLT ALQ     G   +GL+++    ++        + +++G+EGKG
Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDLDALGGPVVIVVGSEGKG 276

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L     E    +  + MPG  ++LN   AA V LY      A+
Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAARKRAQ 319


>gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium
           nodosum Rt17-B1]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 5/232 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGK 107
            +YG + +   L +    +  +  + +    LD           P    P   + K+ G+
Sbjct: 2   IVYGRNVLKEILTSNH-PVKLIYFSDSHDKELDKLIEQVKERKLPYTIAPKNVLKKLCGE 60

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           E    G+ ++           +  +  +++LD V DP N+GAI+R+AVA   + ++ TK 
Sbjct: 61  EKNQ-GVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTKD 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +    K+++G +  IP +   NL   ++K+   G    G      KPL +     
Sbjct: 120 NSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIYGA-DMRGKPLWEVKLER 178

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + ++ G EG G+R   +E+   +  + M   I +LNVS +A + +Y     
Sbjct: 179 PLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRR 230


>gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001]
 gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001]
          Length = 262

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 8/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   R    +  T+ ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRPDMCI-VTEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +        V  P  +   +       G+ L    L +P  D V  + +++  
Sbjct: 61  HDEAQAIVSRIEDHLIVTLPDALFGQLSNVVHGVGMLLLVEKLSAPLPDTVEETCIVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDA--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +       +   S   + +++   + ++A + G EG G+    ++  +    +  PG
Sbjct: 176 AALIGRLAVPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI-TQNHFAK 282
            +++LNV+ AAAV ++   +   A+
Sbjct: 236 GMESLNVAAAAAVCMFEQCRQQRAR 260


>gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 277

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 102/282 (36%), Gaps = 26/282 (9%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+   +EK+  + +                       +H       F+ G   +S A  +
Sbjct: 12  ITSFSNEKLKHISNLKEK-------------------KHRETSGLFFIEGYREISRAQKS 52

Query: 64  PS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              R    L + +  L   ++            VP +  +KI  ++     +A      +
Sbjct: 53  GKVRFQNVLYSPECFLGENEFSLIRSIGVKNIKVPKKVFEKISYRDRPDGLIATAHFFPI 112

Query: 123 SPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    +  +  + ++V++ V  P N+G ILR+A       +I +       +  + 
Sbjct: 113 GLDFFEKKSETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVI 172

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GAL  +              +    ++T+ ++ ++KK         KIAL+ G+E 
Sbjct: 173 RASTGALFTLDVYLGEIE-TIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQ 231

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL    +  +     L M G   +LN++ +A + +Y     
Sbjct: 232 YGLSSYARNHSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQ 273


>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1]
 gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
           PYR-GCK]
 gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1]
          Length = 314

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 13/272 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNA 77
           A  R +H   K+     ++++   +   +   + G + V   L          +    +A
Sbjct: 41  AHERPHHPAGKRAAKAARQAQGRHKKTDDTEIVLGRNPVVECLRAGVPATALYVALGTDA 100

Query: 78  LARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------- 128
             RL             +  V    +D++     +HQG+AL+  P      D        
Sbjct: 101 DERLTESVQMAADRGISILEVQRHDLDRMAA-NGLHQGIALQVPPYAYAHPDDLLRDAKS 159

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA    P
Sbjct: 160 DAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTP 219

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R +NL   L++    G Q +GL +     +++        +++G+EGKGL    +E  
Sbjct: 220 VARATNLNRTLKQYADAGLQVVGLDAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENC 279

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + M G  ++LN S AA V L       
Sbjct: 280 DRIVSIPMAGPTESLNASVAAGVVLAEIARQR 311


>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 277

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 10/274 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
                   +++R  +   +     +   +     + G+    + + +  R  F     + 
Sbjct: 2   KKLERITSKSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWRIRFAFFTDRG 61

Query: 77  ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDA 128
             +       +       PV  +  +   ++   +     L        T         +
Sbjct: 62  GESLAAAQLVEKLCERRTPVYLISDELCAELSDTDTPQGVLLIAERDPGTPLKRFMRPCS 121

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + ++A G L ++ 
Sbjct: 122 NEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMN 181

Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +     D LQ               D  +           A++ G E  G+       
Sbjct: 182 VAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILAR 241

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A    ++ M G +++LNVS AAAV LY       
Sbjct: 242 A-RRVYVPMFGPVESLNVSAAAAVILYECVRQRI 274


>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Puerto Rico]
 gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Virginia]
          Length = 251

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           ++ G H   AAL NP+R    +L T   L +    A +        K V  + I KI+G 
Sbjct: 2   WICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGH 61

Query: 108 EAV-HQGLALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNIGAILRSAVA 156
             + HQG+AL    L       +R   ++          ++LD V D +N+GAI+RSA  
Sbjct: 62  GGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAAC 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ +  
Sbjct: 122 FDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY +
Sbjct: 182 DKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSS 241

Query: 277 QNHF 280
               
Sbjct: 242 YLQL 245


>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++  K  H AKL R  R            RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVVECLHA- 84

Query: 65  SRKIFQLLATKNALA--RLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +      RL     +      P+  +    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATSLYIVQGTRNDARLSEAVAIANSRNIPILEIQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                               + ++LD++ DP N+GA++RS  AF   G+I  +R S S +
Sbjct: 144 YKYADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R++N+T  +Q+    G+Q +GL +  +          D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +E    +  + M   +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQR 311


>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 248

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V   L     ++  L   K     RL     L       V+     +++K+ G+ 
Sbjct: 8   YGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGQP 67

Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +        L     + LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  + S +    K A+G  E + +I+++NL       K  +       +  +   P+
Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246

Query: 281 A 281
            
Sbjct: 247 N 247


>gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis TXDOH]
          Length = 247

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii
           DSM 22836]
          Length = 246

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 7/241 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E   ++G+  +  A+       K+      +  L++  +         V+ VP + +D+
Sbjct: 2   KEKEMIFGIRAIIEAIEAGKEIDKVIVKRELQGDLSKELFALLKSRDIAVQRVPNERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              K        L              L        ++VLD + D  N GAI R+     
Sbjct: 62  FTRKNHQGVIAFLSAITYEHIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D I+   + S + +A   K+++GAL  IP  +  +LT+A+Q + + G + +  +     
Sbjct: 122 VDAIVIPAKGSVTVNADAIKTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGAD 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +  IA ++GAE  G+       A ++  +   G I +LNVS AA V +Y    
Sbjct: 182 DYTAVDYSGPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIR 241

Query: 279 H 279
            
Sbjct: 242 Q 242


>gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
 gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
          Length = 246

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+  ++   +   S         S   K   +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 210 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06]
          Length = 261

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +       +V    + KI         +     
Sbjct: 43  LQSGGKPLGVYIPEAKMPSEEVRKLMAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L    +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++
Sbjct: 102 IPDAGVLPDKGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LSEIYPQADLEIWLARYEDRVFATALREEKQAVLYNEDLREPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      +
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
 gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
          Length = 254

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 100/276 (36%), Gaps = 24/276 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R                    + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYR-------------------EEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +         LA+    
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKGISTFLVSDEVMDAVSDLPTPQGILAVMALT 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +       ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 101 AEGAPDFSGGW----LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      ++    L++  K+D  A+I+G EG+G+
Sbjct: 157 QGSNYHLPVLQQDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGV 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       ++ M G  ++LNV  AA + LY  
Sbjct: 217 SQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 252


>gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
          Length = 260

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 7/240 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +++G H +++ L      I ++       +  AR            +       + K+ G
Sbjct: 6   YIFGFHAITSRLRQHPDSIKEIYLDTNRHDQRARDLMSLAETTSTRLILCEQDRLCKMTG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                   A  T      TL+ +        LL+VLD V DPHN+GA LR A AF    +
Sbjct: 66  TTRHQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+ 
Sbjct: 126 VVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLDS 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +A +LGAE  G+R  T+E    +  + M G I++LNVS +A + L+ T    ++
Sbjct: 186 VTLTRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQHSQ 245


>gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205]
 gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205]
          Length = 258

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   + L    RKIF L  T+ AL   + 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLSWLQQ-QRKIFSLFTTEQALDHPEL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        +  + + K +                 +      +   L++  ++V D
Sbjct: 67  QEIIEIHQGHIFIISEVLYKDLSTLGTTLPCLAIVDLPKTSQTIDFKADTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSVNCFENFQLTDILPKFE 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +          ILG EG+G+     E A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQACVWILGNEGQGVSDYALEHA-EAVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 272

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 4/262 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              + R++  YK ++   Q  R   +     L G+H + A   +    I  +++      
Sbjct: 2   RRIVSRDNPHYKVLKKLLQSGRERRRTGLAVLDGMHLIDAYSRHCGIPIEIVVSDSGTGR 61

Query: 80  RLDWDANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                        V   V    +   +       G+             A       +VL
Sbjct: 62  PEIASYLESGQVGVTITVLGDVLFAELAVVETPSGIMAIIDRPRPLQGPAPDMQADTVVL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G+ILRSA A     I+ +   + +      K+   A+     + +    D 
Sbjct: 122 DGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAW---APKTLRAAMGAHFQLDVLEHCDL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              + ++  Q +     +   L        +A + G+EG G+RP           + MPG
Sbjct: 179 PAFLSAYRGQPVATLLGASTSLYGADLAGPVAWVFGSEGLGVRPAVAALTRLQVRIPMPG 238

Query: 259 IIKALNVSNAAAVALYITQNHF 280
             ++LNV+ AAAV L+ T    
Sbjct: 239 PSESLNVAAAAAVCLFETVRRR 260


>gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 246

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P + +   T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPIMTLDLDTFITQFNGPVYGTALENAVAYKEVTSIDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 266

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   ++     + +   L G H   + L    RKI  L  T+ AL   D+
Sbjct: 16  SKDNAKIKHLRGLIEQQSFRKKQKQTVLEGTHLCLSWLQE-QRKIISLFTTEVALKHADF 74

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  +        V  +++ + +                 S      +   L++  +++ D
Sbjct: 75  EKIIDIYQGAIFVISESLYRDLSTLGTTLACLAVIDLPQSSQAIDFKKDTLIL--ENIQD 132

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   ++ TK  +   S  + ++  GA   +       L   L++  
Sbjct: 133 PGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGMGAHFSLYTFENIELDMILEQFD 192

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    + +    +          ILG EG+G        A     +  PG  ++L
Sbjct: 193 IPVFVTSSHHATNLYDQD---LTKPCVWILGNEGQGASEYALSHA-QAITIPQPGGQESL 248

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 249 NVAIAGSICFFEMVRQR 265


>gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis Bt4]
 gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis E264]
          Length = 247

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD V    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 271

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 16/267 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALN--NPSRKIFQLLATKNALAR 80
           RD ++ Q+ +++ R T+  E       F+YG H     L   +   K+F         A+
Sbjct: 3   RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
               A       V  VP + +D +      HQG+ +  A      L+ +           
Sbjct: 63  AILKAANKRNILVSNVPKEKLDTLSD-GGNHQGVVMAIAAYKYAELEDIFKKAEEANEDP 121

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++MVLD + DPHN+G+ILR+A A    G+I   R +   + V+AK+++GA+EH+P +R++
Sbjct: 122 IIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVRVT 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  +  +   G   +  +    + + Q      IA+++G EGKG+ P  ++    M  
Sbjct: 182 NISKTIDLLKERGVW-VFGTDMKGQSMWQMDAALPIAVVIGNEGKGVSPGVKKHLDGMIT 240

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN S AA + +Y      
Sbjct: 241 IPMRGHVQSLNASVAAGLLMYQIYQSR 267


>gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 295

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 19/291 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAA 60
           K + + ++ K++ +   R      K  +    K           + +  F+ G H     
Sbjct: 3   KNNNQSYNQKNNEFNSRRTAKNTAKPTRRPANKKPAAPVEEAAVEEQTDFVIGKHASLET 62

Query: 61  LN-NPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L  + ++KI ++                        ++ VP   +D +  ++  HQG+ L
Sbjct: 63  LKTSDAKKINKIFLQDGLKADFVHDVVKLAKEKRLIIQNVPKNKLDLLSDRQ-NHQGIIL 121

Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             AP    ++D              +++LD++ DPHN+G+I+R+A A    GII  K  +
Sbjct: 122 AIAPFEYASVDDIFAKAKAQEEEPFILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRA 181

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              ++ +AK+++GA+EHIP  R++NLT  ++K+   G    G         + + K   I
Sbjct: 182 VGLTSTVAKTSTGAIEHIPVARVTNLTQEIKKLKDRGLWIFGTDMAGTDYRKWDAK-GPI 240

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            LI+G EGKGL P  ++       + M G +++LN S AA V +Y   N  
Sbjct: 241 GLIIGNEGKGLSPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYNSR 291


>gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
 gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
          Length = 290

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 103/262 (39%), Gaps = 6/262 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  ++++Q+         +     + GV  ++ A+++       L      L+
Sbjct: 3   VQRISTRNARFQQLQTLLGNRTKRGRAREFLVQGVRPITMAVDHGWTVRSLLYDADRPLS 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           R   D           + P+ + ++  K +   + LA+        +  AV +  L ++ 
Sbjct: 63  RWAEDLLRRTDAERVAMAPRLLAELSEKADGAAEVLAVVAMEPDDLSRIAVHDGFLGLLF 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193
           D    P NIG+I+RSA AF  DG+I T   +        ++++G+         P     
Sbjct: 123 DRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEV 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A ++        +G   D +  + +      + L++G E  GL    ++    +  
Sbjct: 183 VEWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSAAWRDLCDHVVS 242

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           + M G   +LN SNAA+V LY 
Sbjct: 243 IPMTGSASSLNASNAASVVLYE 264


>gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola
           DSM 14237]
 gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola
           DSM 14237]
          Length = 254

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+N      K+F     K  L +        +      VP + ++++   +
Sbjct: 16  IYGIRAIIEAINADKAIDKVFIQKGLKGDLFKEFETLIRRNGINSSYVPVEKLNRLT--K 73

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   TL+           + L ++LD ++D  N GAI+R+A     DG
Sbjct: 74  GNHQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 133

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G +TI  +  ++  + 
Sbjct: 134 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVY 193

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +  A+I+G+E  G+ P   +     A + + G I +LNVS A  V LY      +
Sbjct: 194 DISFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLYEAVRQRS 253


>gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
 gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
          Length = 248

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F+ G   V  AL         L+     ++ L              V+ VP + +D    
Sbjct: 4   FIEGKRPVIEALRTGVPIKSILMADNMQRDGLIEDILRKAKRAGATVEMVPRKVLDGKSD 63

Query: 107 KEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
               HQG+  + AP               + +      L+++LDH+ D  N+GA+ RSA 
Sbjct: 64  -RGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRSAE 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +  
Sbjct: 123 AVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGATEH 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K  + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +Y 
Sbjct: 183 AKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYE 242

Query: 276 TQNH 279
               
Sbjct: 243 WLRQ 246


>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 246

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ KI +                       +K R   +     + G H +  A
Sbjct: 1   MEIITSAQNNKIKNANKL-------------------KKKRERDKTGLALIEGYHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   KI QL          D  +     F +     + +          QG       
Sbjct: 42  YKS-KIKIQQLYVVDADRIHDDMISYAEEVFEINLKVAEVL----SGTVTPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +  + +A +    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PIYESNNAKQ----VLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +                   +  +    +   QE      AL+LG EG+G+
Sbjct: 153 QGSVFHIPILTTELSGFIADFEGDVYGTALEDAVVYNQIPSQETF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K     T    + + G  ++LNV+ A ++ +Y  +
Sbjct: 209 NDKLLSQTTQNLTIPIYGKAESLNVAIAGSIVMYHLK 245


>gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 257

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107
            ++G + V   L +       L+ ++N   R     +L      P + V    +DK  G 
Sbjct: 7   LVFGRNAVIELLKSGHPVNKVLINSENRSNRNADILSLMKERGVPYQFVERAVLDKFSGG 66

Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +     +A   A     T D             ++VLD + DPHN+GA+LR+A A    G
Sbjct: 67  DKHQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPHNLGALLRTADAAGVHG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R S   +  +AK+++GA+E++P  R+ NL     K        +  +    + + 
Sbjct: 127 IIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNL-VQALKQLKKAGCWVTGAEAGGRDVF 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +    L++G E KGL    +ET   +  L M G + +LN S A ++ +Y  +    
Sbjct: 186 SADLSGPRVLVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEVRRQRI 245


>gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
 gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
          Length = 244

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 105/238 (44%), Gaps = 7/238 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVG-- 106
           ++G+  V  AL         L+       L R   +A   H   +  VPP+   +     
Sbjct: 7   IFGIRAVLEALEAGKTPEKILVRKDLTGNLFRQLQEAAKKHNMSLTVVPPERFRRFESRN 66

Query: 107 KEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            + V   L+  T    +  +D       + L ++LD V+D  N+GAI+R+A      G+ 
Sbjct: 67  HQGVVAVLSPITYREHTALIDETLARDKAPLFLLLDGVSDVRNLGAIIRTAECAGVSGLF 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                S   SA   K+++GA  ++P  R  +L D +  + + G + +  +  ++  L + 
Sbjct: 127 LPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEKAESTLYEA 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +ALI+G+E +G+ P   +     A L M G I++LNVS A  V L+  Q   A
Sbjct: 187 DLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFEAQRQRA 244


>gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1001]
          Length = 247

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+        A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +A       A  L+  LD +  S L++VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 258

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 96/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H     L    +KIF L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLTWLQQ-QKKIFSLFTTEQALEHTDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        V  + + + +                 + +    +   L++  +++ D
Sbjct: 67  KKIIELHQGHIFVISEVLYRDLSTLGTSLPCLAIIDLPKTASTIDYKVDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFP 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      + A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-ESVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
 gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
          Length = 324

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 21/290 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            + ++I + + + Y   R+      ++      +   ++  +  L G + V  AL     
Sbjct: 38  AEKQRIKAAERAQYLATRK-----VRVVEELPGATVRARDGSELLIGRNPVVEALRAKVP 92

Query: 67  KIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV----HQGLALETA 119
            +  LL      +                +  V    +D+   +  +    HQGL L+  
Sbjct: 93  AVRLLLSNSLDPDERITEAARLAGQQGIAIAEVARPELDRRCERLGLPKAAHQGLILQVE 152

Query: 120 PLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    T D           + L++ LD V DPHN+GAI RSA AF   G++  +R +   
Sbjct: 153 PYEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGV 212

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIAL 231
           +    K+++G L  IP  ++ NLT  L++    GF   GL +D   P  + E+  +   +
Sbjct: 213 TTAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPLDQWELATEPSVV 272

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++G+EGKGL    +ET   +  + + G +++LN S AA VALY       
Sbjct: 273 VVGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRRT 321


>gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus GG]
 gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 260

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 16  EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A 
Sbjct: 76  SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D +
Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 195 DYRQWDAK-GSTALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMYQA 252


>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
 gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
          Length = 283

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 119/269 (44%), Positives = 166/269 (61%), Gaps = 11/269 (4%)

Query: 16  KDSHYAKLRRNHRDY----------KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++  + +  R   D           +  +   +K+R TS      LYG HTV+AAL NP 
Sbjct: 6   REPRFRRASRPRSDIHTKEAGGRNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPR 65

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R+I +LL T+NA  RL  + N+  P   + V P  ID+ +G +AVHQGL  E  PL SP 
Sbjct: 66  RRIRKLLVTENAARRLTHE-NIDTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPD 124

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           ++ +    +++VLD + DPHN+GAI+RSA AFS   I+TT R+SP  + VLAKSASGALE
Sbjct: 125 IETLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALE 184

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P + + NL  AL  ++  GF T+GL S   + L      + +AL+LGAEGKGLR  T+
Sbjct: 185 IVPLVLVQNLARALAGLNDRGFMTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTR 244

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T +++A L MPG IK+LNVSNAA +ALY
Sbjct: 245 DTCSAVARLDMPGHIKSLNVSNAAVLALY 273


>gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974]
 gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 246

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 288

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 22  KLRRNHRDYKKMQS------FNQKSR--HTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           + + ++ ++++           +       +Q  +  LYG   V  A+    R++ ++  
Sbjct: 7   RGKSDNSNFRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAMEE-ERQLNRIWV 65

Query: 74  ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--- 126
                 +       +    +   +  V    +D+I   +A HQG+A + +P     L   
Sbjct: 66  VNRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITS-KANHQGIAAQMSPYEYIELADL 124

Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      ++++ + + DPHN+GAI+R+A A  C G++  +R +   ++ + K A+G
Sbjct: 125 IEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMKVAAG 184

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALE++P  R+ NL  AL+++ + GF   G ++ S K L        I L+LG+EG+GL  
Sbjct: 185 ALEYLPVARVVNLNRALEELKAAGFWLYGAAAKSGKSLHTINLTGAIGLVLGSEGEGLSL 244

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            TQ++   +  + + G   +LN S AAA+ALY      
Sbjct: 245 LTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282


>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 316

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++  K  H AKL R  R            RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVIECLHA- 84

Query: 65  SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L               +        P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATTLYIAAGTRNDKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                ++             + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +
Sbjct: 144 YKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R +N+T  +++    G+Q +GL +         E   D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+     ET   +  + M G +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQR 311


>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 316

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 26/288 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++  K  H AKL R  R            RH  +   + + G + V   L+  
Sbjct: 38  TPKAEDRVYHAK--HKAKLERERR---------NSGRHQKETAEMVV-GRNPVIECLHA- 84

Query: 65  SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L               +        P+  V    +D++ G   +HQG+ L+  P
Sbjct: 85  KVPATTLYIAAGTRNDKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQIPP 143

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                ++             + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +
Sbjct: 144 YKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
           AV  ++++G    +P  R +N+T  +++    G+Q +GL +         E   D + ++
Sbjct: 204 AVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIV 263

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKG+     ET   +  + M G +++LN S AA   L       
Sbjct: 264 IGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQR 311


>gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
 gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
          Length = 258

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 146/245 (59%), Gaps = 7/245 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA        + +
Sbjct: 11  KEQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVI 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  +  ++VHQG ALE  PL    L      R +  +++LD V DPHN+GAILRS
Sbjct: 70  DPRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRS 129

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + GF  +GL 
Sbjct: 130 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLD 189

Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  ++      +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA
Sbjct: 190 GEAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAA 249

Query: 271 VALYI 275
           +ALY 
Sbjct: 250 IALYA 254


>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 279

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 5/254 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S   K +H  + E     G+  ++ A          L+A+      L  D 
Sbjct: 22  SNPTIKFVRSLRDK-KHRRREERFLAEGLRLLTDAREGGRLPEILLMASGRDEHPLLSDL 80

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  VP   + K+ GK+       +        +    + + + +V+  + 
Sbjct: 81  EQAVVESGGDVIEVPTDILAKVTGKDNPQAVAGVYAEWDTGLSTIDRKAAPIWLVVQAMR 140

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+A A    G+I     +   S    +++ GA+      +     +  + +
Sbjct: 141 DPGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQARWA-EFQEWL 199

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                Q +  S    +P           +++G E +GL  + +        + M G   +
Sbjct: 200 RQGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEEYEMACDLRVTMPMKGRADS 259

Query: 263 LNVSNAAAVALYIT 276
           LN + A AV  Y  
Sbjct: 260 LNAAVAGAVLAYEV 273


>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 254

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 89/238 (37%), Gaps = 11/238 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +    F+ G  +V  AL +     + +              ++P          + I 
Sbjct: 23  RYEEGLFFVEGTTSVLEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIAHTTERIF 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K +      Q +              ++   + ++ D++ DP N+G I+R+A AF    I
Sbjct: 76  KKLSDTVTPQMVMAIIKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  ++      K          L +        
Sbjct: 136 FTINNCVDIFNPKVLRASMGSIFHIPVIATTSQILLKLKRRGIKVFATHLKAQKLVHECN 195

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +DKIA +LG E KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 196 I--SDKIAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249


>gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 245

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+       K++     +  L +               VP   I+K+  K 
Sbjct: 7   IYGLRAIIEAIEAGKDIEKVYLQKELEGDLFKELESLIKSKRISSSYVPEIKIEKLS-KG 65

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG   + AP+     +   N         + ++LD ++D  N GAI+R+A       
Sbjct: 66  RNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFGAIVRTAECTGVSA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II +K  S   +A   K+++GA+ +IP  ++ ++ DA+  + S   + +  +  +   + 
Sbjct: 126 IIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVKIVAATEKTDNTIY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   ALI+G+EG+G+ P   +     A L + G I++LNVS A    LY      
Sbjct: 186 DVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVATGAFLYEAIRQR 244


>gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 244

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ N  ++I ++   K+A   L  D       +      VP + ++++   
Sbjct: 7   IFGIRAIIEAI-NAKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSYVPVEKLNRLT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     AP+   +L+             L ++LD ++D  N GAI+R+A     D
Sbjct: 64  PNNHQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  ++  +
Sbjct: 124 GIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKTENHI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N+ +A+I+G+E +G+ P   +     A L M G I++LNVS A    LY      
Sbjct: 184 YDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQR 243


>gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 321

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 18/278 (6%)

Query: 20  YAKLRRNHRDYKKMQS------FNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQL 71
            A+ R NH  Y+K  +        Q+ R  +      + G + V   L     +  ++  
Sbjct: 40  KAQDRPNHPAYRKANAAAKANAVRQQRRKAADAAPETVAGRNPVVECLRAGIPATALYVA 99

Query: 72  L-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126
           L    +                V  V    +D+I G  A+HQGL L+  P          
Sbjct: 100 LGIDADDRVAEAVQLAASRGISVLEVQRGELDRITG-GAMHQGLGLQVPPYEYAEPRDLL 158

Query: 127 ---DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     LL+ LD V DP N+GA++RSA AF   G++  +R S S +AV  ++++G 
Sbjct: 159 RAAKESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGT 218

Query: 184 LEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +P    +N      +   +        +         ++    + +++G+EG+GL  
Sbjct: 219 AARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGPLVVVVGSEGRGLSR 278

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +ET      + M   +++LN S AA V L       
Sbjct: 279 LVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRR 316


>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
          Length = 259

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 25/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  KK+  I  +K                      + +H +Q  +  + G H V  A
Sbjct: 7   MKEIQSKKNTFIKEIKKL-------------------TQKKHRTQTNSYLIDGWHLVQEA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+     I  LL T   L+  +   +         +  + I  ++      QG+      
Sbjct: 48  LHA-QVPIKALLVTPRGLSEANGQLDDYQ--EESYLITEEIAAMLSDLPTPQGIFAVV-- 102

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    +   ++LD+V DP N+G ++R+A A    G+   +  +   S  + +S 
Sbjct: 103 -EKQEQDLQTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSM 161

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P +  +      Q   +         +    P  +  K    A ILG EG+G+
Sbjct: 162 QGSNYHLPIVEGAIPPFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGV 221

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +         ++ + G  ++LNV+ AA + +Y
Sbjct: 222 NQELLALTDKNLYIPIYGQAESLNVAIAAGILMY 255


>gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
 gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
          Length = 246

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSPALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 237

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 2/232 (0%)

Query: 51  LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGV+ V  AL      K++    TK+   R        +  PV  VP + +        
Sbjct: 4   IYGVNPVREALMKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKLHAKSQGVE 63

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                           + +       ++VL+H+ DP N+GAILRSA AF   G+I  KR 
Sbjct: 64  ADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRR 123

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +  +AK+++GA   +P  R +N+ + L+ +   G   +G  + SK  L        
Sbjct: 124 AVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWDTDFKLP 183

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL++G E  GL             + M G I +LN S AAA+ +       
Sbjct: 184 LALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235


>gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
 gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
          Length = 338

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPP 98
            +P    + G   V+ AL      +   L    +  +      L         PV+ V  
Sbjct: 91  KKPATDLIEGRRAVAEALTVGI-PLKNALVQAASGQKDQEIEALARQLEQEGIPVERVAR 149

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153
             +D +    A HQG+ + T P     L  +       + L++VLDHV D  N GAI+RS
Sbjct: 150 PVLDSLSSHGA-HQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEGNFGAIVRS 208

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      G++     +        K+++GA+ H+P  ++SNL  AL+++ + GF T G +
Sbjct: 209 AEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAAGFWTCGST 268

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + + + +     ++AL++G+EG G+     E       L   G +++LNV+ A  V  
Sbjct: 269 EHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMC 328

Query: 274 YITQNH 279
           Y     
Sbjct: 329 YEWLRR 334


>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 257

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 94/253 (37%), Gaps = 6/253 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K  +    K +   Q     L G H V+ A+      + QL+ T + L       
Sbjct: 8   HNQHVKNWKKLQTK-KFRRQRGEYLLDGWHLVNEAVKAGI-LLRQLIGTADQLTAHRELV 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +         V P+ +  I          A+   P        ++ + LL+  D V DP 
Sbjct: 66  DRAA--EAYVVTPEIMQHITETVTPQGIAAIVDLPDAHRVPANIQGAWLLL--DRVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A    G++   R +      + +S  G+  H+  +               
Sbjct: 122 NVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTLLEGDLHKWVQDFKRIG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   + + +   +       ALI+G EG+G+        T+  ++ M G  ++LNV
Sbjct: 182 APVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAETTTNLYIPMRGDAESLNV 241

Query: 266 SNAAAVALYITQN 278
           + +A + ++    
Sbjct: 242 AVSAGILMFQLNQ 254


>gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 279

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPS-RKIFQLLAT 74
           + R N +   + ++  +      +       E+ F++G H V+ AL      K+F     
Sbjct: 7   RKRPNKKTAGQSEARKENRPDRRKEAEGEAIEDNFVFGYHAVAEALKEGRGNKLFLSEEA 66

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVR 130
           +        +       PVK VP Q +D +   + VHQG+ L   P    TLD      +
Sbjct: 67  RGEKIDRLKEMAREQAVPVKWVPKQKLDTMSD-QGVHQGMILAITPYQYLTLDELLAQTK 125

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++ K+++GA+EHIP  
Sbjct: 126 EQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVA 185

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R++NLT A+Q++   GF   G                 + LI+G EG+G+    ++    
Sbjct: 186 RVTNLTQAVQQLKKAGFWIFGTDMSGSDYRTWN-AQGAVGLIIGNEGRGMGEGLKKEVDQ 244

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           M  + M G +++LN S AA + +Y       
Sbjct: 245 MLTIPMTGHVQSLNASVAAGLLMYQAFTSRN 275


>gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
 gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
          Length = 246

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKI 104
           F++GV +V+  +N     I +L   +             +       PV  VP   +++I
Sbjct: 5   FVFGVQSVTETINAGK-PIDKLFIQRELGRNSPKVAYILEEAKKREVPVAKVPLDKLNRI 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    + +    L  +           L+++LD + D  N GAI R+A   
Sbjct: 64  T--RKNHQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAECA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+   R S   S+   K++SGAL ++P  R +NL   ++ +   G Q +  +  + 
Sbjct: 122 GIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEKTS 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +         A+++G+E  G+       A  +A + + G I +LNVS A AV +Y   
Sbjct: 182 ETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYEAV 241

Query: 278 NHFA 281
              +
Sbjct: 242 RQRS 245


>gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
 gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
          Length = 275

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 10/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++L+G+H V  AL NP+R   +L+ T+NA  RL     +      +   P+     +  
Sbjct: 37  TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLGEAIAV-GGLEPEIADPRRFTAPLDP 95

Query: 108 EAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++VHQG ALE  PL    L+             +++LD V+DPHN+GAILRSA  F    
Sbjct: 96  QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R+S  E+  LAK+ASGALE  PY+R++NL  A++ +   G+  +GL+ ++++ +E
Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215

Query: 222 QE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +     ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY ++ 
Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275


>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+    ++++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLEKLAGLP 67

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +                LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPYPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  +S  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis EO147]
 gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis C6786]
          Length = 247

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++   +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQR 243


>gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
 gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
          Length = 252

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 46  VQAGVT-IEKVFALESYRDQL---VAFPQTI---WVSEEILLDLADTQ-TPQGIVAVIQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGLPDLHQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+  ++   +   S         S   K   +    +   L++G EG+G+
Sbjct: 156 QGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRESKDYRELSSLENFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 216 SSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 249


>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
 gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
          Length = 241

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG + V  AL +  P  KI+       +       +       P+K V    I+K+VG 
Sbjct: 5   IYGKNAVLEALKSNIPLNKIYIAKGIHFDNKFNEILNLAKEKGVPIKYVERSVIEKMVG- 63

Query: 108 EAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               QG+    + +     + +     N  +++VLDH+ DPHN+GAI R++       I+
Sbjct: 64  -GNSQGVLAIISSVPYREWEDIEKTLNNKSVIVVLDHIQDPHNLGAIARTSEFAGASAIV 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   ++   K+++GAL +IP +R+SN+ + L+++   G+  +G   D++    Q 
Sbjct: 123 IPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKKKGWFIVGADLDTENLYNQV 182

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +AL++G+E +GL    +E+   +  +   G +++LNVS A  + LY  +
Sbjct: 183 NYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIR 236


>gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
 gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
          Length = 238

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG + +   L     K+  +  +    A L            P      + + ++   E
Sbjct: 3   VYGRNILKEILETN-TKVRMIYFSDTNSAELTELIEEVKKRRLPFTIANKKVLQRLSNTE 61

Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             HQG+ ++           +       L++LD + DPHN GAI+R+AVA   D II  K
Sbjct: 62  K-HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +  + K + G +  I  I+  N+   ++ +   G   +  +  + K   +    
Sbjct: 121 NNSVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIW-VYGADTNGKVYYKTDLR 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             IA++LG EG G+RP  +E   ++  + M   +++LNVS +A + LY     
Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232


>gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.]
          Length = 247

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 7/240 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H ++A L      + ++      ++A  R            +       ++ + G
Sbjct: 6   LLHGFHAITARLRAFPATVNEVWYDPARQDARMRAFLHLAASANARLIAADASRLNALSG 65

Query: 107 KEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++     +A  T       L   LD +    LL+ LD V DPHN+GA LR A       +
Sbjct: 66  EKRHQGVVARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +R +   +A  AK+A+GA E +PY+ + NL  AL+ + + G Q IG + D+   L  
Sbjct: 126 IAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVIGTADDATTSLFD 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +  +AL++GAEG G+R  T+E    +  + + G +++LNVS A+ + L+       K
Sbjct: 186 IQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAVRQRLK 245


>gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC
           35896]
          Length = 242

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  AL    P   I+    +K    R            +K      ++++  + 
Sbjct: 3   IEGRNAVLEALKKEIPLDVIYVSKDSKEGSIRKIISMAKEKKIILKQTDRMKLEQMT-ET 61

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+   T      T++           +  L++LD + DPHN+GA++RSA     DG
Sbjct: 62  AAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVDG 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S + +A + K+++GA+ +   +          ++       +           
Sbjct: 122 VILPKRRSATVNATVEKTSAGAVSY-MKVARVTNISQTIELLKKENYWVYGLDMDGTEYT 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q   +  IA+++G EGKG+    ++    +  + M G I++LN S A +V L+      
Sbjct: 181 QNDWSGNIAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239


>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
          Length = 336

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 18/261 (6%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVK 94
           Q+++   +P    + G ++V  AL            +    +   +           P+ 
Sbjct: 66  QRTQRRGRPSEEMVTGRNSVVEALRAGIPAKALYIAVRIEVDDRVKEVLKLASERGIPLM 125

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQLLMVLDHV 141
                 +D++   +AVHQGLAL+  P   P                 ++NS L++ LD +
Sbjct: 126 ETHKPELDRMTD-DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGI 184

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI+RS  AF+   +I  +R S   +A   K+++GA   +P  R  NL  AL+ 
Sbjct: 185 TDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALES 244

Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G+  +GL  D    L    +  + + +++G+EGKGL    +E    +  + +   +
Sbjct: 245 FKGMGYFVLGLDGDGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAM 304

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN S A  + LY      +
Sbjct: 305 ESLNASMAVGITLYEIARQRS 325


>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
           thermophilus TK-6]
          Length = 240

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 5/233 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V  AL +       L+A  +                ++ VP   I+++ G + 
Sbjct: 2   IVYGKNPVIEALRSGKDIEKVLVAHDSHPPYQVAKLCKERGVKIQKVPRAKIEELAGTKK 61

Query: 110 VH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                     +          DA++ +  ++VLDH+ DP N+G +LR+       G +  
Sbjct: 62  TQGILAIISPINYVSSNELFKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALLP 121

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              S   + V+ K+++G++ H+   ++ +L     K        +       K +     
Sbjct: 122 THRSSPINQVVVKASAGSVFHLKISKVPSL-SKALKDFKKQGGWVISVERGGKDIRYTSI 180

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               AL+LG+EG+G+     E +  +  + M G I +LNVS+A A+A++    
Sbjct: 181 PLPCALVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVR 233


>gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
          Length = 248

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 115/243 (47%), Gaps = 11/243 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKI 104
           +  +YG+H V + L  NPS  +   +  K+  ++L++  N        ++    + ++  
Sbjct: 2   SELVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLNIK 61

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               ++HQG+  E   ++          +        L++LD + DPHN+GA LRSA A 
Sbjct: 62  SS-GSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S S ++ + K +SG+ +H+ ++R++NL   L+ +  +    +G    S 
Sbjct: 121 GVHMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        +AL++G+EG G+R  T+E    +  + M G   +LNVS A  + L+   
Sbjct: 181 REIFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1]
 gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1]
          Length = 260

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 9/250 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +  +  E ++L+G+H V  AL NP R++ +L+ + NA  +L  DA        +  
Sbjct: 11  KERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIA 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151
            P+     +   +VHQG A+E  PL                 ++++LD V+DPHN+GAIL
Sbjct: 70  DPRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I   R+S  E+  LAK+ASGALE +PY RI NL DA++ + + GF  +G
Sbjct: 130 RSAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVG 189

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ +   P++       +  IAL+LGAEG GLR +T+     +A +       +LNVSNA
Sbjct: 190 LAEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNA 249

Query: 269 AAVALYITQN 278
           AAVALY    
Sbjct: 250 AAVALYALTK 259


>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
           BAC clone 67]
          Length = 319

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 109/282 (38%), Positives = 156/282 (55%), Gaps = 6/282 (2%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAAL 61
            +         K +           +K    F  K +        +   LYG+H+V  A 
Sbjct: 6   KRPYHPLDRQPKPAREGSRMGEKPAFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVKEAF 65

Query: 62  NNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            NP R+  +++AT+NA+ RL  D  NLP     + V P+ I +++  +AVHQGL +E   
Sbjct: 66  ANPRRRFRRIVATENAVQRLTEDGVNLP--LAPELVKPEAIGRLLTPDAVHQGLYVEAER 123

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L  +   ++++ LD V DPHN+GAILRSA AF   G+I T R+SP  + VLAK+A
Sbjct: 124 LPLLPLGKLPRDRIILALDQVTDPHNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAKAA 183

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALEH+P   + NL  AL  +   GF  IGL S++ + +        I L+LGAEG+GL
Sbjct: 184 SGALEHVPMAGVQNLARALTTLKDEGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGRGL 243

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           RP T+E  + +A L +PG IK+LNVSNAAA++LY  Q    +
Sbjct: 244 RPSTRELCSHLARLELPGAIKSLNVSNAAAISLYAVQQAITR 285


>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 306

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 21/288 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    ++ AK  R  R  ++     Q  +   +  +  + G ++V  AL   
Sbjct: 26  TPKAEDRVYH--KAYKAKQERLKRAAQQ-----QARKKKKEHGSNMVAGRNSVLEALREG 78

Query: 65  SRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +    +   R   +A      P+       +D+I    A+HQG+AL+  P
Sbjct: 79  I-PATTLYVARRIDADERVRDIIEAASDRGIPMLEAGKPDLDRITD-GAIHQGVALQVPP 136

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 D             LL+ LD + DP N+GAI+RS  AF   G+I T+R + S +
Sbjct: 137 YEYAHPDDLLSLARDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMT 196

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
           A   K+++GA   IP  ++ NL  A+  +   G   +GL  +    L +     + + L+
Sbjct: 197 AAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGLDMNGDVELPKLELAREPVCLV 256

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKGL    ++    +  + +    ++LN   AA VALY      
Sbjct: 257 VGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVARTR 304


>gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 256

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++   +     A               V+  P   +D++ 
Sbjct: 3   VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+             LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++ L++D ++
Sbjct: 122 SHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +       AL+LG+EG+G+RP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
 gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
          Length = 320

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 16/262 (6%)

Query: 35  SFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLP 88
               +      P+    ++YG + V  AL         +   +    +   R     ++ 
Sbjct: 61  RSAGRRPARKDPDATVEWVYGRNPVVEALRAG-VPASAIYVAEGTERDPRLREALLLSVE 119

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141
               +  VP Q +D++     VHQGLA++  P      D             L++ LD V
Sbjct: 120 RGVALLEVPRQELDRLTS-NGVHQGLAIQIPPYEYAHPDDLLRAAYDADQVPLIVALDGV 178

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI RSA AF   G++  +R + S SA   K+++GA   IP  R +NL  AL+ 
Sbjct: 179 TDPRNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALKS 238

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G   IGL  D +  L       D I L++G+EGKGL    +E    +  + M    
Sbjct: 239 YKDAGLFVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSAT 298

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LN   A  VALY       +
Sbjct: 299 ESLNAGIATGVALYEISRRRTQ 320


>gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus Lc 705]
          Length = 260

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 16  EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A 
Sbjct: 76  SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D +
Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 195 DYRQWDAK-GSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252


>gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 267

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 7/268 (2%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I SL              +  +     ++R               +  AL+     + 
Sbjct: 4   ERITSLDHPGVE-------VFSALTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLS 56

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L   ++ +             PV T     + ++ G       L       +    +  
Sbjct: 57  MLCEERHIVGDAADIIARCGDIPVFTGERTLLAQLTGYTLTRGVLCAMRRKPMGNVAEVC 116

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N+  + V+D V D  NIGAI RSA A   D ++  K      +    + + GA+  +P+
Sbjct: 117 GNATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPW 176

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                    L  +           +       +     ++A+++G EG GL  +    A 
Sbjct: 177 TWAEQPLAELSTIGFRTAAMALTHNSIPLNDARLKAEPRLAIVMGTEGDGLPSEVIAQAD 236

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  + M   + +LNV+ A+AVA +  +
Sbjct: 237 YVVRIPMAHGVDSLNVAAASAVAFWELR 264


>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
 gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
          Length = 246

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    +   L                    V  +  +  + + G     QG       
Sbjct: 42  YQS--EIVITQLFAIEPARLDQQIIAYAQ--EVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 237

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 4/231 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V   L N  + I +L   K     +              +     + I+   G 
Sbjct: 4   VIGINPVLEVLQNREKTIEKLEVYKGVRGEVLQKIQRLASERNIKIFY-TNKKIENSQGF 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                               A ++  ++++LD + DP N GA++RSA  F  D II  +R
Sbjct: 63  CIFLTDYDYYREFDEILENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++P ++++NL++ ++K+    +   G + +++    +E    
Sbjct: 123 NSVRINETVVKTSTGAIEYVPIVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSAEEQYPQ 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K+ L+LG EG GLR K +E    +  + M G I +LNVS A  + L     
Sbjct: 183 KVVLVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILLSEIAK 233


>gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii
           C-113]
          Length = 284

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 109/239 (45%), Gaps = 10/239 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ ++  L   +  + +                + V  + +D++V   
Sbjct: 31  YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGLKAQPVKREELDELVPGA 90

Query: 109 AVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +A        T   L   LD +    LL++LD V DPHN+GA LR+A A    G+
Sbjct: 91  RHQGVVARCSVQSALTEEGLLAFLDQLGTPPLLLLLDGVQDPHNLGACLRTAEAAGVHGV 150

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  K  +   +AV  K ASGA E +P +R++NL   ++ +   G   +G           
Sbjct: 151 VVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGGTHATLY 210

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  Q   
Sbjct: 211 ETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269


>gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang]
          Length = 259

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 15  EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+ L   P    TLD               ++LD++ DPHN+G+ILR+A A 
Sbjct: 75  SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G   +  ++   
Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   +       AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251


>gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
          Length = 259

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 15/268 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +  A   + HR                +       G + V+AAL      + ++  T+
Sbjct: 5   RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            A  R +      H   V  V  +    +         +A+   P          + QL+
Sbjct: 52  VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISN 194
            V   + +P N G ++R A A             P     + A + S     +       
Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAVADHRVGDHPLGGKCLRASTGSIFAIPVVVAPDVG 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A  +          +  +        +  +  A + G E  GL  +    A    H+
Sbjct: 171 AAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G  ++LNV+ AAA+ LY +     +
Sbjct: 231 PMSGGAESLNVAAAAAICLYESARALGR 258


>gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
 gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
          Length = 283

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 123/274 (44%), Positives = 164/274 (59%), Gaps = 15/274 (5%)

Query: 14  SLKDSHYAKLRRNHR-----------DYKKM--QSFNQKSRHTSQPENLFLYGVHTVSAA 60
           S +D H  + RR  R           D K+   +   +  R T       LYG HTV+AA
Sbjct: 2   SDRDPH-PRFRRASRPWGDSHARKAGDRKRPPGRGSARNGRETGADGPAILYGWHTVTAA 60

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L NP R+I +LL T+NA  RL  +       P + V P  ID+ +G +AVHQGL  E  P
Sbjct: 61  LANPRRRIRKLLLTENAARRLANENIETRLTP-EIVRPSAIDQRLGPDAVHQGLLAEADP 119

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L SP +D +    +++VLD + DPHN+GAI+RSA AF+   I+TT R+SP  + VLAKSA
Sbjct: 120 LPSPDIDTLAQEGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSA 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE +P + + NL  AL +++  GF T+GL S   + L        +AL+LGAEGKGL
Sbjct: 180 SGALELVPLVLVQNLARALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           R  T+ET  ++A L MPG IK+LNVSNAA +ALY
Sbjct: 240 RQLTRETCNAVARLDMPGDIKSLNVSNAAVLALY 273


>gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 259

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 15  EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+ L   P    TLD               ++LD++ DPHN+G+ILR+A A 
Sbjct: 75  SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G   +  ++   
Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   +       AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251


>gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240355]
          Length = 234

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 64  PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118
             + I +L   +   +A  R   +        V       ++ I  K A HQG+A     
Sbjct: 4   NPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAIS-KGARHQGVAGFIDA 62

Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A 
Sbjct: 63  SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           ++K A GA E +PYI ++NL   L+++  +G   IG        L      D  A ++G 
Sbjct: 123 VSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGN 182

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 279

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 12/269 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNAL 78
           +          +   +++    +       G   V  A+ +        + +L  T  A 
Sbjct: 7   ISPRSPRVVAARRLAKRN-FRGKDRLFIAEGPQAVREAVEHRGSTGEPTLVELFTTVEAA 65

Query: 79  ARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            R     +A L     V       + ++         + +                +L+ 
Sbjct: 66  ERYSAIIEAALASGARVHHASDAVLAEVSQTVTPQGLVGVCRFLDSPFEEIVAARPKLVA 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL HV DP N G +LR A A   D ++ T       +    +++ G+L H+P      + 
Sbjct: 126 VLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVE 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMA 252
            A+  + S G + +      +  L+ E          A + G E  GL  +T+  A ++ 
Sbjct: 186 QAVAGLKSAGVRILAADGAGEDDLDAELDAGTMGGPTAWVFGNEAWGLPEETRALADAVV 245

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN-HF 280
            + + G  ++LN++ AAAV LY +     
Sbjct: 246 RVPIHGKAESLNLATAAAVCLYASARAQR 274


>gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 259

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 15  EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+ L   P    TLD               ++LD++ DPHN+G+ILR+A A 
Sbjct: 75  SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G   +  ++   
Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMW-VFGTAMDG 192

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   +       AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 251


>gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           phytofermentans ISDg]
          Length = 248

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 9/237 (3%)

Query: 53  GVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G + V  A        ++F L   ++   +        +   +  V  + +D++  +   
Sbjct: 10  GRNAVLEAFRAGKTIDRLFILDGCQDGPIKSILREAKKYDTIITFVKKERLDQMSEEGKH 69

Query: 111 HQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +A   A   +   D      A   +  L++LD + DPHN+GA+LR+A      GII 
Sbjct: 70  QGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQAGAHGIII 129

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            KR +   +A +AK ++GA+ + P  +++NL   ++++   G   +     S + + ++ 
Sbjct: 130 PKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCA-DMSGEVMYRQN 188

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               I L++G+EG+G+    +E    +  + M G I +LN S A  V  Y      +
Sbjct: 189 LTGPIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQRS 245


>gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 249

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A +   L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG EG GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246


>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 12/246 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTID 102
           + + +++YGV+ V  +    S  + ++  +KN +++L     L       VK V    I+
Sbjct: 4   KDKLMYIYGVNPVLESFK-ISDALKEIYISKNRISKLKEILRLAEEKSISVKIVEETFIE 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           KI   + VHQG+  +  P  + TLD               ++LD V DP N G+I R A 
Sbjct: 63  KIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICRIAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     II  K+ S      + K+++GA+ H+  + I+N+  A++ +        G  + 
Sbjct: 121 AAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGAEAQ 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K    +      + LI+G+EGKG+R         +  + M G I +LNVS A+A+  + 
Sbjct: 181 AKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALITFE 240

Query: 276 TQNHFA 281
                 
Sbjct: 241 VLRQRK 246


>gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
 gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 7/246 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +   P          +  AL      +  L+  K+               PV T   +T+
Sbjct: 30  NEPNPGLFIAESPKVIERALKAGYEPLSFLVEHKDLDGEAGDILARYPEIPVYTAEYETL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G       L       L    +  +NS+ + +L+++ +P NIGAI RSA A   D 
Sbjct: 90  VKMTGYALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGAIFRSAAALHMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ T   S       A+ + G +  IP+      T   +            +       +
Sbjct: 150 VLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNLGFKTVAMALRDD 209

Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +D        +A++LG EG GL  +T         + M   + +LNV+ A+AVA +
Sbjct: 210 SYSIDDPELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFW 269

Query: 275 ITQNHF 280
                 
Sbjct: 270 ELGRKR 275


>gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae
           BGR1]
 gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae
           BGR1]
          Length = 260

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    ++   +     L G+H  +A L+   +    +  T  ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCV-VTDGALAHDET 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +    P + V  P  +   +       GL L      +   +  R +  ++VLD V 
Sbjct: 65  RAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPE--RVTGTVVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +         D + ++
Sbjct: 123 DAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + ++    +  +A + G EG G+    +E A     +  PG +++
Sbjct: 183 GVPV---ALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQCRQ 256


>gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 246

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKTGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQRGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 261

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +  + +  +   +  +   +            V +V    + KI         +    
Sbjct: 43  LQSGGKPL-GVYIPEGKMPSEEVRRLRAVVPEDRVFSVSDGILKKISS-LTCADDVLALI 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +  L A  +    +VLD V DP N+G +LRSA A     ++  +  +   S  + +
Sbjct: 101 DIPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +     ++L   L       F T             E   +  A + G EG 
Sbjct: 158 AGMGAHFLLDIYSQADLEIWLASYKGRVFATALREEKQAVLY-GEDLCEPTAWVFGNEGA 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+     + A     + M    ++LNV+ AA + L+      +
Sbjct: 217 GVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRS 259


>gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 266

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLP 88
           KK++          +  +  LYG   V   L    P  K+F          +   +    
Sbjct: 6   KKIRGKQVNKVIDQEQNDEILYGRQVVLTILEEKKPINKVFIQKGLSGDKIQTILELVKQ 65

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141
                + VP   +D +  +   HQG+ +   P+   +L+               ++LD +
Sbjct: 66  RQLVFQEVPKAKLDDLS-QGQNHQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGI 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+G+I+RSA A    GII  KR + S + ++AK+++GALEHIP +R++NL   + +
Sbjct: 125 EDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQ 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G          +           IA+I+G EG+G+  K  + A     + M G ++
Sbjct: 185 LKTKGVWIFATDMAGQDIRSWNS-QGPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQ 243

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN S AA++ +Y   +   
Sbjct: 244 SLNASVAASIIMYEVASKRI 263


>gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
 gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
          Length = 247

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D  VG
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNAQALDG-VG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+A   A   + + +             LL+VLD V DPHN+GA LRSA A   
Sbjct: 66  GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++   
Sbjct: 126 TAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+     
Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 268

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 109/235 (46%), Positives = 149/235 (63%), Gaps = 1/235 (0%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + + LYG H V+ AL NP R++ +LLAT+N LARL  +         +TV P  I  +V
Sbjct: 35  EDTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELR-IAPETVRPGEISALV 93

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G +AVHQGL LE  PL  P ++ +    +L+ LD + DPHN+GAI+R+A AF+   I+TT
Sbjct: 94  GPDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTT 153

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R+SP+ + VLAKSASG LEH+P+I + NL +AL +    GF  IGL S++  PL +   
Sbjct: 154 ARHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTP 213

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + ++LGAEGKGLR +T+E    MA L  PG IK+LNVSNAAA+ LY      
Sbjct: 214 TRPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYALAPRR 268


>gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 265

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 103/262 (39%), Gaps = 7/262 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--D 82
                 + +   ++++    +     L G      AL      + +L AT  AL +    
Sbjct: 5   PRSPRVRAVAKLSKRA-ARQETGLFLLEGPQAAREALAWAPETVLELYATPTALEKHTDV 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            DA       ++      +D +         +A+      +       + +L+ + + V 
Sbjct: 64  RDAAEKAGVDLQYTTEAVLDAMADTVTPQGIVAVARQSPTALKDVLAGSPRLIAICEEVR 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   D ++ T R     +  + +S +G+L H+P      L   ++++
Sbjct: 124 DPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVDLELAHVVERV 183

Query: 203 HSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           H  G + +    D       +++ ++  A + G E +GL       A     L + G  +
Sbjct: 184 HEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLSLRLPIFGRAE 243

Query: 262 ALNVSNAAAVALYI---TQNHF 280
           +LN++ AA+V LY     Q   
Sbjct: 244 SLNLATAASVCLYETAFAQRAR 265


>gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 281

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 1/252 (0%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+     +      + +   LYG HTVS AL NP+R+  ++LAT+NA  RL  +   P P
Sbjct: 29  KRKGGPGRPPAWEGENDVALLYGWHTVSEALANPARRFRKILATENAANRLQEE-GFPLP 87

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + V P  IDK++G +AVHQGL  E   L SP L  V  S L++VLD + DPHN+GAI
Sbjct: 88  VAPEIVRPSEIDKLLGSDAVHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAI 147

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF+   I+TT R+SP  + VLAKSASG LEH+P+  ++NL  AL+++ + G   +
Sbjct: 148 VRSAAAFAVGAIVTTARHSPVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVV 207

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL S+    LE       +AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA
Sbjct: 208 GLDSEGPADLEDTAMRPPMALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAA 267

Query: 271 VALYITQNHFAK 282
           ++L I +    +
Sbjct: 268 LSLGIARRALKR 279


>gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
 gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
          Length = 246

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 13/243 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
             + G + V  AL    R I ++   +    +               V++VP + ID + 
Sbjct: 4   EIIGGKNPVLEALRAD-RDINKIWIAEGVQKKGITELLQLAKDKGVIVQSVPKKKIDGLT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+A   A     +LD               ++LD + DPHN+G+I+R+A A  
Sbjct: 63  D--TNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPHNLGSIMRTADAIG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR +   + V+AK+++GA+EH+P +RI+NL+  + ++   G    G  +    
Sbjct: 121 VHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKRGVWIAGTDAKESV 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      +A+I+G+EGKG+    +E    +  L M G + +LN S AA++ +Y    
Sbjct: 181 DYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240

Query: 279 HFA 281
              
Sbjct: 241 KRN 243


>gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           LC2W]
 gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           BD-II]
          Length = 259

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 15  EFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPKQKLDLM 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+ L   P    TLD               ++LD++ DPHN+G+ILR+A A 
Sbjct: 75  SD-QGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 133

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +       +  ++   
Sbjct: 134 GVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERSMW-VFGTAMDG 192

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   +       AL++G EGKG+ P   +   +M  + M G +++LN S AA + +Y  
Sbjct: 193 QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLNASVAAGILMYQA 251


>gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
 gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
          Length = 269

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R   Q           +  AL      +  L   K+             
Sbjct: 17  FSTLTEAQLRNRIDPQRGIFIAESPKVIRVALEAGYEPVSLLCERKHLTGDAADIVQRMA 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P   P  +  R ++ ++V+  V D  NIGA
Sbjct: 77  HLPVYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+  +    + L+++       
Sbjct: 137 IFRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDRPLEQLKELGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                          +  ++AL++G EG GL     E A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399]
 gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385]
 gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240013]
 gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76]
 gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M04-240196]
          Length = 261

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSTNNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +    +   +      +        +       +V    + KI         +     
Sbjct: 43  LQSGGMPVGVYIPEAKMPSEEVRKLTAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L A  +    +VLD V DP N+G +LRSA A     +I  K  + + S  + ++
Sbjct: 102 IPDAGALPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +  I      +     +        L  + +  L  E   +  A + G EG G
Sbjct: 159 GMGAHF-LSEIYPQADLEIWLVRYKGRVFATALREEKQAVLYGEDLCEPTAWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti
           VCD115]
 gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus
           deserti VCD115]
          Length = 241

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGK 107
            LYG + V  AL +    ++      + A  R             V+  P   +D++ G 
Sbjct: 2   LLYGRNPVMEALKDGRVSEVLLARGVEEAFVREVKTLAESVGGVRVRFSPRIELDQLAG- 60

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+  E   +   ++D + +         ++++LD + DP N GAI+RSA      
Sbjct: 61  TTQHQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPRNFGAIIRSAEVLGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ + L
Sbjct: 121 GVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAEGVWVYGAAGEAAQEL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K+AL++GAEG+G+R   +E    +  + + G +++LN S AA + LY      
Sbjct: 181 GKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEATRGR 240

Query: 281 A 281
            
Sbjct: 241 K 241


>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 249

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLL---SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P        LD +     + LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  + S +    K A+G  E + +I+++NL       K  +       +  +S  PL
Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 322

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALN 62
           + K  ++++    +H  K+ +   + KK Q+   ++R + +    N  + G + V  A++
Sbjct: 35  TPKAEDRVYHA--AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD 92

Query: 63  NPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                I   LA      R+            PV  V    ++   G E+ HQ + +E   
Sbjct: 93  AGIDIIRVFLAGNALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPE 151

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               +               L++ LD V DPHN+GA+LRS  AF   G++ ++R S S +
Sbjct: 152 YDYCSAQDLLERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVN 211

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
           A   K ++GA   +P  R +NL  AL ++   G   +GL       L         + ++
Sbjct: 212 AAAWKVSAGAAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVV 271

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEGKGL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 272 TGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAE 321


>gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 279

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 25/278 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           LI+   ++ I +++  H                     +           G+  +  AL+
Sbjct: 14  LITSLTNDTIKAVRALHM-------------------RKEREATSRFLAEGLKFIGEALD 54

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALET 118
                +  LL  ++A      D            +  V    ++KI  ++     L +  
Sbjct: 55  QGRAPVM-LLVGQDARPHPLLDRAKAETLKAGGQIIVVTHAILEKISRRDNPQTVLGVFE 113

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                            + L+ V DP N+G I+R+A +  C G+I         S    +
Sbjct: 114 QVYTPLDAIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVR 173

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  G++     I  ++  + L     W    IG   D+              +++G E  
Sbjct: 174 ATMGSVF-AVTISKASREEFLAWRAQWPGSVIGTRLDATHGYRDSPVRHPAIIMMGNEQA 232

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +          + M G   +LN++ A  V +Y  
Sbjct: 233 GLTDELAAACDLNVKIPMRGRADSLNLAVATGVMVYAV 270


>gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 260

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            F++G H V AAL    +  I +L    +  +                V T P Q +D +
Sbjct: 16  EFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLDLM 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A 
Sbjct: 76  SDH-GNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADAS 134

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D +
Sbjct: 135 GVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQ 194

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + + K    A+++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 195 DYRQWDAK-GSTAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252


>gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 249

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         +DA +   L++VLD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQR 246


>gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 95/259 (36%), Gaps = 8/259 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARL 81
           +   K +    +K R         + G   +  AL+   R    L          A    
Sbjct: 11  NPRLKGLVGL-RKRRTRETEGLTLVEGYDELGLALDAGVRP-QTLYVCDELMLDAARQHD 68

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             DA       + TV  Q  +++  +E     LA+  +    P +  +  + LL+V + V
Sbjct: 69  VIDAARTAGAEIVTVARQAFERVAYREGPDGFLAVVPSVNAHPRMLDLPANPLLLVAEGV 128

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+GA+LR+A A   DG+I                 S        +  +  ++ L+ 
Sbjct: 129 EKPGNLGAMLRTADAVGVDGVIA-ADPVTDWGNPNVVRGSKGTVFSVPVAAAPTSETLEW 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       I  + D+         +  +A+ +G E  GL  +    ATS   + M G + 
Sbjct: 188 LRDNDIPLIATTPDTDVMHTDIDLSGPVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVN 247

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ +AA+ LY      
Sbjct: 248 SLNVATSAAIVLYEAMRQR 266


>gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
 gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
          Length = 280

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 115/247 (46%), Positives = 152/247 (61%), Gaps = 1/247 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +  K  +    + R       + LYG HTV+ AL NP R+I +L  T+NA  RL  D  +
Sbjct: 24  KPRKFERPQPWRDREQGSDGPVILYGWHTVTLALGNPKRRIRKLYLTENAARRLA-DERI 82

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                 + V P  ID+ +G +AVHQGL  E  PL SP +D +    +++VLD + DPHN+
Sbjct: 83  ETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLPSPDIDTLAAEGMILVLDQITDPHNV 142

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSA AF    I+TT R+SP  + VLAKSASGALE +P I + NL  AL ++   GF
Sbjct: 143 GAILRSAAAFDVKAIVTTARHSPEATGVLAKSASGALELVPIITVQNLARALTRLDERGF 202

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           QT+GL S     +      + +AL+LGAEGKGLR  T+ET + +A L MPG IK+LNVSN
Sbjct: 203 QTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSN 262

Query: 268 AAAVALY 274
           AA +ALY
Sbjct: 263 AAVLALY 269


>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 246

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+E+I + K  H                     +   Q     + G H V  A
Sbjct: 1   MKRIESVKNERIKAWKKLH-------------------SKKGRDQTGRFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +  +    L    +A               V     + +     +    QG+      
Sbjct: 42  WKSDWKVETVLTTADDASLFPGE------CIGVSEAVMKEL----SETKSPQGIVAVCQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T + ++   +L+  D V DP N+G I+R+A+A    G++     +   +A + ++ 
Sbjct: 92  KQWHTPERLKGRFVLL--DRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRAT 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GAL H+P      +T       S              P +Q    ++ AL+LG EG+G+
Sbjct: 150 QGALFHLPVYMGDLVTWIEALKESGIPVYGTS-LQDATPHDQFHSQEQFALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    + AT    +      ++LNVS AA + L+  +
Sbjct: 209 QSHLLDAATENLFIRQNRKAESLNVSVAAGILLFALK 245


>gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF]
 gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 273

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 5/254 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +       G   V  AL++       LL           D    
Sbjct: 17  DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGHGMRSMLLT--EKWLPAMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V P+T +++ G       LA      L    D +  ++ + V + + D  N+G
Sbjct: 75  SEAPVYLVSPETAERVTGYHVHRGALASLHRTPLPAPADVLAGARRVAVFEDLVDHANLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHSW 205
           A  R+A A   D  + T R +        K + GA+    +          D +++    
Sbjct: 135 AAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAGFT 194

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                              ++ ++AL+ G+EG GL P     A     + M   I +LNV
Sbjct: 195 LAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSLNV 254

Query: 266 SNAAAVALYITQNH 279
           + A AV  Y T+ +
Sbjct: 255 AAATAVVFYATRKN 268


>gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78]
 gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78]
          Length = 273

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 90/254 (35%), Gaps = 5/254 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +       G   V  AL++       LL           D    
Sbjct: 17  DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGHGMRSMLLT--EKWLPAMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V P+T +++ G       LA      L    D +  ++ + V + + D  N+G
Sbjct: 75  SEAPVYLVSPETAERVTGYHVHRGALASLHRTPLPAPADVLAGARRVAVFEDLVDHANLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHSW 205
           A  R+A A   D  + T R +        K + GA+    +          D +++    
Sbjct: 135 AAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAGFT 194

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                              ++ ++AL+ G+EG GL P     A     + M   I +LNV
Sbjct: 195 LAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSLNV 254

Query: 266 SNAAAVALYITQNH 279
           + A AV  Y T+ +
Sbjct: 255 AAATAVVFYATRKN 268


>gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 255

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVAG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A      L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246


>gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
 gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
          Length = 248

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 6/236 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V  A+ +       L+A  +                ++ VP + I+++ G + 
Sbjct: 5   IIYGRNPVLEAIRSGRSVEKVLVAHDSHPPHQLVKLCKEKNIKLQKVPRKKIEELAGTKK 64

Query: 110 VHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               LA+ +        +  R +      L+VLDH+ DP N+G +LR+       G +  
Sbjct: 65  TQGVLAILSPVHYVKEEELFRKTLERGSFLLVLDHLTDPQNVGNLLRTCEVLGGVGALLP 124

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  S   +  + K++SGA+ H+   R+S+L     +        I +     K + Q   
Sbjct: 125 KDRSCPINQTVIKASSGAVFHLLLSRVSSL-RRSLENFKRVGGWIVVVERGGKDIRQVDI 183

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
               AL+LG+EG+G+     E A  +  + M G I +LNVS+A A+A++   + H 
Sbjct: 184 PLPCALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWETIKKHL 239


>gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24]
 gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24]
          Length = 328

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 23/297 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK---MQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           + K  ++ +    +H  K        K+    +    +S    +     + G ++V  AL
Sbjct: 33  TPKAEDRPYH--KAHKNKQLAERSAAKRPGAARGAGARSGPKGRATEEVVTGRNSVVEAL 90

Query: 62  NNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                       +    +   +           P+       +D++   +A+HQGL L+ 
Sbjct: 91  RAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAIHQGLVLQI 149

Query: 119 APLLSPTLD-------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            P                     V N+ L + LD + DP N+GAI+RS  AFS  G+I  
Sbjct: 150 PPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGVIVP 209

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R S   +A   K+++GA   +P  R +NL + L+   + G   +GL  D    L     
Sbjct: 210 ERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDGDGDVSLPDLSL 269

Query: 226 -NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + + +++G+EGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 270 AKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 326


>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 12/270 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNAL 78
           +          +   +++    +       G   V  A+ +        + +L  T  A 
Sbjct: 7   ISPRSPRVTAARRLAKRN-FRGKDRLFIAEGPQAVREAVAHRGPDGEATLVELFTTVEAA 65

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            R     +  H     V       + ++         + +                +L+ 
Sbjct: 66  ERYADIVDAAHAAGARVHHAADTVLAEVSQTVTPQGLVGVCRFLDSPFEDILAARPKLVA 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL HV DP N G +LR A A   D +I T       +    +++ G+  H+P      + 
Sbjct: 126 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSHFHLPVAVGVPVE 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMA 252
            A+Q +   G + +      ++ L+ E          A I G E  GL  +T+  A ++ 
Sbjct: 186 QAVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEETRALADAVV 245

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN-HFA 281
            + + G  ++LN++ AAAV LY +     A
Sbjct: 246 RVPIHGKAESLNLATAAAVCLYASARAQRA 275


>gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
 gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
          Length = 284

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 95/254 (37%), Positives = 146/254 (57%), Gaps = 9/254 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++++  +  E ++L+G+H V  AL NP+R+  +L+ T+NAL RL  DA      
Sbjct: 31  KWVIAKEQAKRQAAQETVWLFGLHAVRDALENPARQKLRLVVTRNALERLG-DAVAQSGM 89

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
             +   P+     +  ++VHQG ALE  PL   +L+ V          +++LD V DPHN
Sbjct: 90  EPEISDPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRIVLLDRVTDPHN 149

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA  F    ++  +R+S  E+  LAK+ASGALE  PY+R+ NL DA++ +   G
Sbjct: 150 VGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNLADAMEALKGMG 209

Query: 207 FQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +  +GL  ++   +E      ++  +AL++GAEG GLR KT+ET   +  +       +L
Sbjct: 210 YLVLGLDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELVKIDAAAGFGSL 269

Query: 264 NVSNAAAVALYITQ 277
           NVSNAAAVALY  +
Sbjct: 270 NVSNAAAVALYAVK 283


>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
          Length = 246

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I                         +K R   +     + GVH +  A
Sbjct: 1   MEQITSAQNNRIKQANKL-------------------KKKRERDKIGLALIEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +    I QL A + A         + +   V  +  +  + + G     QG       
Sbjct: 42  YQSGI-VITQLFAIEPAR---LDQQIIAYAQEVFEINMKVAESLSG-TVTPQGFFAIIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++
Sbjct: 97  PQYD----ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P +     T   Q         +  +   K+    +      AL+LG EG+G+
Sbjct: 153 QGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVTYKEVTSSDSF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+     T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 313

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 14/279 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQ 70
            ++  H  K R      K++Q          +  +  + G + V  AL           Q
Sbjct: 36  EMRKGH-KKNRIATAKTKQVQRRPAPRGRGGKSASEMVVGRNPVVEALREGVPATMLYVQ 94

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVREALQLAGERGGIHLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPEDL 153

Query: 130 R-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 SAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R +NLT  L+     G   +GL++D +  L   E     + +++G+EGKGL 
Sbjct: 214 TAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDLEALAGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ET      + MPG  ++LN   AA V LY      
Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312


>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 257

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 90/255 (35%), Gaps = 10/255 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WD 84
           ++  K++++    +R   +  +  + GV  VS AL   +     L A             
Sbjct: 7   NQHVKRLRALADTARLRRRERSFVIEGVRLVSDALAAGAYLQVVLYAPDQLATTAAGATL 66

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  P        +          QG+    A       D      L ++LD + DP
Sbjct: 67  LARLQHLPRCFPATPAVVAAAADTEQPQGVVAAVAWP-----DLPPRPGLRLILDEIQDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LRSA A     +I     +   S  +A++A GA      + +  L         
Sbjct: 122 GNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHF---IVPLRLLPWDDIATEL 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+      S +++P          ALI+G E  G+    +  A S   + M G I++LN
Sbjct: 179 AGYTVYAADSAAQQPYYTVDWRQPAALIIGNEAHGVSTAARTLAHSTITIPMAGPIESLN 238

Query: 265 VSNAAAVALYITQNH 279
              A ++ L+     
Sbjct: 239 AGVAGSIILFEALRQ 253


>gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 283

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 12/283 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KK+++    ++ H  + ++       ++    + +     +   + G + V  AL +  +
Sbjct: 2   KKNDR-KKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRSEQQ 60

Query: 67  KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
               L+   N    L   A         V++V    ++ +   +  HQG+A   AP    
Sbjct: 61  MDKLLILKDNKDHVLGDLAEKARRRGIVVQSVEKIKLEGLADGQ-PHQGVAAMMAPFPYS 119

Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           ++       DA     L+++LDH+ DPHN+GAI+RSA      G+I  KR S S +AV  
Sbjct: 120 SMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAVSV 179

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K++SGA+ H P +++ NLT  + ++ + GF     +     P  +     K+A+I+G EG
Sbjct: 180 KASSGAVAHTPIVKVGNLTQCIDELKAKGFWI-MAADMDGAPYYKNDFKGKLAIIIGNEG 238

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+ P  ++       + + G I + N S AAA+ L       
Sbjct: 239 KGISPNVKKQCDYSVSIPLYGDIDSFNASAAAAIILSEAARQR 281


>gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49]
          Length = 246

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  ISSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  RKEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAACFDGVFISSSSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    D   L++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSSLLILASTLSSTSIDYREVDSKDSFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTAAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
          Length = 249

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 45  QPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  N  +YGVH V  +L  N   K++     +                 +   P +++ +
Sbjct: 8   EENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVSISWTPKKSLSE 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  A      LD +       ++ L+++LD + DPHN G+ILR+A A 
Sbjct: 68  MTD-GAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILILDGITDPHNFGSILRTADAT 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   + V+AK+++GA++H+P  R++NL+  L K+   G+   G   D  
Sbjct: 127 KVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQTLDKLKEKGYWIFGTDMDGT 186

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +    + K+ALI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y   
Sbjct: 187 PSPKWNT-SGKLALIIGSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVY 245

Query: 278 NH 279
            +
Sbjct: 246 RN 247


>gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 274

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       +R               +  AL+     I  L+  K+   +         
Sbjct: 18  YARWTENQLLNRKDPDNAMFIAESPKVIQTALDAGYEPISCLVEKKHVEGQAAPILAQCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G       L +     L    D  +N++ + +L+ V +P N+GA
Sbjct: 78  DIPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   DGI+ T   S        + + G +  IP+  + +     +       + 
Sbjct: 138 IFRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRLHEM 197

Query: 210 IGLSSDSKKPLEQEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               +           +D        +A++LG EG GL   T         + M   + +
Sbjct: 198 GFKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDS 257

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A+AVA +  +  
Sbjct: 258 LNVAAASAVAFWEMRRR 274


>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           210]
          Length = 324

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M    ++LN S AA V L    
Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304


>gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 296

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 15  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 73

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 74  RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 132

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 133 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 192

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 193 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 252

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M    ++LN S AA V L    
Sbjct: 253 VSIPMAAQAESLNASVAAGVVLAEIA 278


>gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
 gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
          Length = 247

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+                +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +     +  A  L+  LD +  S LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++KK L +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +A+++GAEG+G+R  T +T   +  + M G +++LNVS A+ V L+      A
Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
           H37Ra]
          Length = 316

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M    ++LN S AA V L    
Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304


>gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN R506]
 gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN V2475]
 gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv3579c/MT3685
 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
           tuberculosis F11]
 gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M    ++LN S AA V L    
Sbjct: 279 VSIPMAAQAESLNASVAAGVVLAEIA 304


>gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 247

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 7/240 (2%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+ G + V  AL       KIF    ++    +        +   V+ VP + +D++ 
Sbjct: 3   QDFIIGKNPVLEALRAERDINKIFIAEGSQGGQMQQVIGLAKTNGVLVQFVPKKKLDQMA 62

Query: 106 -----GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                G  A            L    +    +   ++LD + DPHN+G+I+R+A A    
Sbjct: 63  EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPHNLGSIMRTADAVGAH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   +A +AK+++GA+EHIP  R++NL   + ++   G    G  +   +  
Sbjct: 123 GIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEKGVWIAGTDAKGSEDY 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + L++G+EGKG+    ++    + HL M G + +LN S AAA+ +Y      
Sbjct: 183 RRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYRKR 242


>gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
 gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
          Length = 244

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+++     K+F     K  L          +      VP + ++++   +
Sbjct: 7   VFGLRAIIEAISSNKSIDKVFLQKELKGELFNELVQLIKKNSINSSYVPVEKLNRLT--K 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG   + +P+     +           + L ++LD ++D  N GAI+R+A      G
Sbjct: 65  GNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFGAIIRTAECTGVHG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  K+     +    K+++GA+  +P  ++ ++ DA+  + + G + I  +  +   + 
Sbjct: 125 IVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVKVIAATEKTNDTVF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A+++G+EG+G+ P   + A + A L + G I++LNVS A    LY      
Sbjct: 185 DVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVACGAFLYEAIRQR 243


>gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
 gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 115/234 (49%), Positives = 151/234 (64%), Gaps = 1/234 (0%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           R +     + LYG HTVS AL NP R+I +L  T+NA  RL  D ++      + V P  
Sbjct: 54  RDSDADGPVILYGWHTVSLALANPKRRIRKLYLTENAARRLA-DEHIETRVTPEIVRPSQ 112

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ID+ +G +AVHQGL  E  PL SP +D +    +++VLD + DPHN+GAILRSA AF   
Sbjct: 113 IDQRLGPDAVHQGLLAEADPLPSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVK 172

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+TT R+SP  + VLAKSASGALE +P I + NL  AL +++  GFQT+GL S     +
Sbjct: 173 AIVTTARHSPEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDI 232

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +AL+LGAEGKGLR  T+ET +++A L MPG IK+LNVSNAA +ALY
Sbjct: 233 AAVTLRQPLALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALY 286


>gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 267

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 13/277 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL D            +  +     ++R  S            ++ A
Sbjct: 1   MPIIE------IHSLTDPRIE-------IFSTLTEAQLRNRIESDKGLFIAESPKVINVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + +  + G       L     P
Sbjct: 48  LNAGYEPLALLCEQKHITGDAADIIERCGDIPVYTGARELLATLTGYTLTRGVLCAMHRP 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +  R ++ + V++ V D  NIGAI RSA A   D I+ T+      +    + +
Sbjct: 108 TPKSVEEICRGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +    + L K+                         K+A+++G EG GL
Sbjct: 168 MGSVFLIPWAWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +T   A  +  + M   + +LNV+ A+A+A +  +
Sbjct: 228 RNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264


>gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 286

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 7/254 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           +      + +H ++       G   V  AL +P   +  L+    A  +   D  L    
Sbjct: 22  RSARRLLQHKHRAETGFFLAEGAQAVREALRSPG-AVDTLVVDDPARHQELVDLALDDGQ 80

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +  V   + D     +       +          + +   +L+++   V DP N G ++
Sbjct: 81  LIDVVQGSSADLASLSDTKTPQGIIAVCHWSGSRFEDIAEPRLVVICAQVRDPGNAGTVV 140

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A AF  D ++ T       +    +++ G++ H+P I    LT A++  H+ G Q + 
Sbjct: 141 RCADAFGADAVVLTHGSVDITNPKTVRASVGSIFHLPIISGVELTGAIEWAHASGLQVLA 200

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +               A ++G E  GL     E A  +A + M G  ++LN+S A
Sbjct: 201 ADGSGQPVDLMAGAGQLGQPTAWLMGNEAWGLPRHDLELADRVAAVPMWGAAESLNLSTA 260

Query: 269 AAVALYI---TQNH 279
           AA+ LY     Q  
Sbjct: 261 AAICLYATASAQRR 274


>gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
 gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
          Length = 256

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++   +     A               V+  P   +D++ 
Sbjct: 3   VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRGAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+             LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++ L++D ++
Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +       AL+LG+EG+G+RP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 247

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V+  +      + +L      ++A  R   +        +       +  + G
Sbjct: 7   ILFGFHAVTVRVKTAPGSVVELYIDGTRRDARMRQFIERAKEAGVRLIESDELRLQALCG 66

Query: 107 KEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                    +  A      L   LD V    LL+VLD V DPHN+GA LR A       +
Sbjct: 67  THRHQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG + D+ + L  
Sbjct: 127 IAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLYA 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +AL+LGAEG+G+R  T++T   +  L M G +++LNVS A+ + LY      
Sbjct: 187 ADLRQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQR 244


>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
 gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
          Length = 370

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 13/280 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +    +DS   +  R  R + +      KS       +  L+G H   AAL    R I +
Sbjct: 35  RGSRSQDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALEAG-RPIHR 93

Query: 71  LLATKNAL--ARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +  T       R              V+ V    + ++ G  AVHQG+AL+TA   +  L
Sbjct: 94  IWCTSEMRSAPRFMQLLRDAKASGVLVEEVTWARLAQMTG-GAVHQGIALQTAAAETLDL 152

Query: 127 DAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             +           LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK 
Sbjct: 153 SDLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKV 212

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +  + LE+   +  + ++ G+E +G
Sbjct: 213 AAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVVTGSEDQG 272

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L   T+     +  + + GI  +LN S A A+ LY     
Sbjct: 273 LSMLTRRHCDHLIRIPLRGITPSLNASVATALCLYEVARR 312


>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 272

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 5/255 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81
              +   K ++  + + ++  + +   + G+  V     +       L        +   
Sbjct: 9   SDKNAVLKHIKGLSLR-KNRIKHQQFTIEGLRIVEECFLHGGPIDHILYCDHIHQVQGGP 67

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLD 139
                L   +P          KI   E     +         L       + +  ++VLD
Sbjct: 68  HLLEKLKEKYPCHQTMDSLFLKIADTETPQGIIAVVEMKNHQLESLDLEKKENPFIVVLD 127

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A     D II TK      ++   ++  GA+ H+P I+ +N  + +
Sbjct: 128 EIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSNNNEEWI 187

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + +   + +  + ++ K   Q   N+ IA+I+G E +G+ P           + + G 
Sbjct: 188 YYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVDERVKIPILGK 247

Query: 260 IKALNVSNAAAVALY 274
           I++LN S AA + +Y
Sbjct: 248 IESLNASVAAGILIY 262


>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 254

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 88/238 (36%), Gaps = 11/238 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +    F+ G   V  AL +     + +              ++P          + I 
Sbjct: 23  RYEEGMFFVEGTTNVLEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIVHTTERIF 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K +      Q +              ++   + ++ D++ DP N+G I+R+A AF    I
Sbjct: 76  KKISDTVTPQMVMAIIKIPKYVENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  ++      K          L +        
Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIAATSQILLKLKQRGIKVFATYLKAQKLVHECN 195

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +DK+A +LG E KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 196 I--SDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249


>gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 249

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIEVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +      +A   A  L    +            LL++LD V DPHN+GA LRSA A S  
Sbjct: 67  QVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAAAASVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+      
Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFEAVRQR 246


>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
 gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
          Length = 246

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLNQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
 gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
          Length = 248

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
              + ++  + G H   AAL +     K+F     K+   +    A       V  VP  
Sbjct: 2   KEQKTDDFVI-GRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKT 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D +   +  HQG+ L  A      L+               ++LD + DPHN+G+ILR
Sbjct: 61  KLDLLSDGQ-NHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILR 119

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  KR +   ++ +AK+++GA+E++P  R++NL   + ++ + G    G 
Sbjct: 120 TADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFGT 179

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
               +     + K    AL++G EGKG+    ++    M  + M G +++LN S AA++ 
Sbjct: 180 DMKGQDFRNWDAK-GPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASLL 238

Query: 273 LYITQNHFAK 282
           +Y       K
Sbjct: 239 IYQGFTSRGK 248


>gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 246

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTEAADILVHISMNGQAESLNVAVAAGILIFHL 245


>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
 gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
          Length = 258

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 23/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   +                  +   K +    + +R   +     L GVH +SA 
Sbjct: 1   MNTIESAQ------------------NPTLKHLAKLLRSARARRESGQAVLEGVHLLSAY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L    + + Q+    + + + +    L    P + V  QT    + K          TA 
Sbjct: 43  LQAGGQ-VLQVYVPASKMQQPETARLLSQLSPERVV--QTAGAALQKITSLSDAEEITAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +  P  +        +VL+ + DP NIG ILRSA A     ++ +   + + S  + ++ 
Sbjct: 100 IALPPTEPFDAEADCVVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAG 159

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA   +      +L    ++ H     T    +               A + G EG G+
Sbjct: 160 MGAHFALRLFVEPDLAAWRERCHVPLLATALHRNSVSLYDCD--LRAPAAWLFGNEGAGV 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A+ + H+ M    ++LNV+ AA V L+      
Sbjct: 218 SETMLAAASRLVHIPMAVQTESLNVAMAATVCLFEQMRQR 257


>gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
 gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
          Length = 247

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +      K+                +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASSVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E     +A       A  L+  LD +  S LL+VLD V DPHN+GA LR A A     +
Sbjct: 66  TERHQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G S ++ K L +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 186 TELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 235

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 4/233 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           + G++ V   L N  + I +L   K A                  +     +  +   G 
Sbjct: 4   IIGINPVMEVLQNKEKTIEKLEIFKGAKDDKINKIKRLASERNIKIFYTDKKR-ENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                               A     ++++LD + DP N GA++RSA  F   GII  +R
Sbjct: 63  VVHVSDYDYYVDFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  + K+++GA+E++  ++++N++DA+ K+    +   G   +  K   QE    
Sbjct: 123 NAVRINETVVKTSTGAIEYVDIVKVTNISDAISKLKKLDYWVYGAEGEGSKDYSQEKYPS 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + AL+LG+EG G+R K +E+   +  + M G I +LNVS A  + L      F
Sbjct: 183 RTALVLGSEGNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIILSEIVKSF 235


>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 253

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 12/238 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             + +  F+ G+++V  AL++  +  + ++         D +      F +  +  +   
Sbjct: 23  RYEEKLFFVEGLNSVKEALDSDFKVEYVVVG-------EDVEFEFKGDFMLIRIANKLFK 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           KI       Q +       +    D ++   + ++ D+V DP N+G I+R+A AF  D +
Sbjct: 76  KISD-TVTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAV 134

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  +N      K          L  +      +
Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLKGKGVKVFATHLKGEKFVHEVE 194

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A ILG E +G+     +       + M G  ++LNVS AAA+ LY +Q   
Sbjct: 195 I--DKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248


>gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 321

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 134/236 (56%), Gaps = 2/236 (0%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             +LYG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G+
Sbjct: 86  TYWLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGR 145

Query: 108 EAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +AVHQG+A+    L S  + D       L++LD V DP N+GAILRSA AF    ++  +
Sbjct: 146 DAVHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME 205

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +P E+  LAK+ASGALE +P +R+ NL   L  + S  F  +GL +            
Sbjct: 206 RNAPDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQ 265

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            ++AL+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY       K
Sbjct: 266 RRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELVR-RGK 320


>gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 258

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +  H   V  +       +         L       L  T   +  +   ++L++V 
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNT---LPCLAIIDLPKTASTIDYNVDTLILENVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A +   II T+  +   +  + ++  GA   +       LTD L K 
Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSASLWTPRVLRAGMGAHFSLSCFENFQLTDILPKF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T    S S    +    +     ILG EG+G      E A     +  PG  ++
Sbjct: 184 DIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++  +      
Sbjct: 240 LNVAIAGSICFFEMVRQR 257


>gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 285

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 3/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    +     + G ++V AA+   S     +                
Sbjct: 19  PRIVNAAKLH-RAAARKKAGVFLVEGENSVEAAIATGSATDVYVTLAAAERFEPIIRTAG 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +  +    +          A+    L S         +L+ V    NDP N 
Sbjct: 78  YLNIYVHYITDKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPRLVSVPVETNDPGNA 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205
           G ++R A A   D ++     +  +S   A++++G+L H+P  R +N+ D     +    
Sbjct: 138 GTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGM 197

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    +       EI     A + G E  GL  +    A     + + G  ++LN+
Sbjct: 198 QILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNL 257

Query: 266 SNAAAVALYITQN 278
           + AA++ +Y +  
Sbjct: 258 ATAASICMYESSR 270


>gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 266

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTV 96
           +     +     + G + V+ AL      + +L  T+ A  R     +  +        V
Sbjct: 19  RGAERRKTGRFLVEGENAVAEALIAG--PVHELFFTEQAAERYPHLIERAVADGVRGSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + I  +         +A+     +         ++LL V   + +P N G ++R A A
Sbjct: 77  TDRAIRALSDTVTPPGVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVADA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D  I         +    +S++G+L HIP +R  N+   L  + S G Q +  ++D 
Sbjct: 137 VGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAADG 196

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L++         A + G E  GL       A     + + G  ++LN++ AA++ LY
Sbjct: 197 EVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256

Query: 275 ITQN 278
            +  
Sbjct: 257 ASAR 260


>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 270

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 87/254 (34%), Gaps = 5/254 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S  +K +H  +       G+  ++ A          ++A +     L    
Sbjct: 10  SNPTVKYLRSLREK-KHRKRERKFLAEGLRLLTDARECDRVPEMLVMAERRDPHPLLTAL 68

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V     + + KI GK        +      S +    +++ + +V   + 
Sbjct: 69  EEAVTGAGGEVIETSDEILAKITGKSNPQAVAGVFAEWNTSLSALDRQSAPIWLVAQALR 128

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I         S    +++ GA+      +     D L  +
Sbjct: 129 DPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQARWD-DFLLWL 187

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S   Q +  S     P           +++G E +GL    +        + M G   +
Sbjct: 188 RSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGLPENYETACDLRVTMPMRGRADS 247

Query: 263 LNVSNAAAVALYIT 276
           LN + A AV  Y  
Sbjct: 248 LNAAVAGAVLAYEV 261


>gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 269

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 11/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    +     + GV+ V AAL +   +I  +L   +   R            V  V  
Sbjct: 19  RAAARREQGRFLVEGVNAVQAALRSGHAQI--MLVPDDDQDRHASLIAEARDAGVDVVAI 76

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    +   E            LL  +LD V     +LL V     +P N G ++R A A
Sbjct: 77  RPQAAVKLAETSTPTGIFAVCGLLDDSLDRVLAAAPRLLAVGVEPREPGNAGTLIRCADA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++         +    +S++G++ H+P +R  +++DAL  + + G   +  ++D 
Sbjct: 137 MGADAVVLLGDAVDPHNGKCVRSSAGSIFHLPIVRERSVSDALSAIAAAGVCVLATAADG 196

Query: 217 KKPLEQEI------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           +  L+              A + G E  GL    Q  A     + + G  ++LNV+  AA
Sbjct: 197 ELILDDISDDADGLLTRPTAWLFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAATAA 256

Query: 271 VALYI-TQNH 279
           + LY   +  
Sbjct: 257 ICLYASARRQ 266


>gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
          Length = 275

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+   + +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYQPLSLLMERKQITGPAQEILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P          +++ + VL+ + D  N+GA
Sbjct: 78  DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I RSA A + D ++ T            + + G +  +P+ +I        +  S     
Sbjct: 138 IFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                                     K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWQLGR 274


>gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 248

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 9/236 (3%)

Query: 51  LYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V+ +L      K++     +     +  D        +   P +T+  +  + A
Sbjct: 13  VYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARNKKVSISWAPKKTLSDMT-EGA 71

Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG  L  +      L+          + L+++LD + DPHN G+ILR+A A    G+I
Sbjct: 72  VHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATKVSGVI 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   + V+AK+++GA+EH+P  R++NL+ AL K+   GF   G   D     +  
Sbjct: 132 IPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDGTPVQKWN 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + K+ALI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y    H
Sbjct: 192 T-SGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRH 246


>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 252

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 93/278 (33%), Gaps = 31/278 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  ++++K                   K  +S  QK ++  +       G   +  A
Sbjct: 6   MEIIKSRQNKK------------------AKYYRSLLQK-KYRIKENLFLAEGAVVIREA 46

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+      +  +  K     +  +       P      +  + +   +     +      
Sbjct: 47  LDF-VDPKYVAIEDKKDFGEII-NLLEERKIPYDIYDREVFETLSDTKTPQGIIGYFEVE 104

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +      +     + LD V DP NIG I+R++ AF  DG++ +   +   S  + +S 
Sbjct: 105 NKTFEPKPGKY----LYLDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRST 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
             ++         NL D             G +   K         D   +++G+E +G+
Sbjct: 161 MASIFRTKVYSDINLMDIRNGFKIICADLKGKNIREKTDW------DDTIVVIGSEAQGV 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  E       + M   I +LN + AA++ +Y    
Sbjct: 215 SKEILEICDEAVLIPMDKNIDSLNAAVAASLFMYEMTK 252


>gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 248

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 5/236 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT++A AR    A L     V  V  +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARF---AALLVGADVHLVTERAAK 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P +S       + +L+ V    ++P N G ++R A A   D +
Sbjct: 68  ALSDTVTPVGLVAVCRMPEVSLDEILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G++  +  +   +    +  +H  G   +  + D +  L+ 
Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATTLDGEVSLDD 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   A + GAE  GL P+    A +   + M G  ++LNV+ AAA+ LY +  
Sbjct: 188 AELSGPTAWLFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSAR 243


>gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2]
 gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 13/279 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL DS           +  +     ++R               +  A
Sbjct: 1   MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLFIAESPKVIHVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + +  + G       L      
Sbjct: 48  LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +  R ++ ++V++ V D  NIG I RSA A   D I+ T+      +    + +
Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +      L+K+                         K+A+++G EG GL
Sbjct: 168 MGSVFLIPWTWLDGSPYELRKLGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
 gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
          Length = 236

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 4/233 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL NP   I ++   K   +                +     +  +   G 
Sbjct: 4   IIGLNPVTEALQNPETNIEKIEIFKGLKDDKIGRIKSLASKRNIKIHFTDKRA-ENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            A                  A     +++VLD V DP N GAI+RSA  F   GII  +R
Sbjct: 63  VAFISQYDYYVDLGAFLEKVAKDEKSIVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+EH+  I+++N+++A+QK+    +   G     KK    E   +
Sbjct: 123 NSVKINETVVKTSTGAIEHVDIIKVTNISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + AL++G EG G+R K +E    + ++ M G I +LNVS A  + L       
Sbjct: 183 RTALVMGGEGSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILLSEIAKKI 235


>gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 255

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 7/256 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHP 90
           M    +KS   S+     L G  +VS AL      + +L AT  AL R    A       
Sbjct: 1   MAKLAKKS-ARSETGLFLLEGPQSVSEALQYRPELLVELYATPTALERHTEIARSAEAAD 59

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V+ V  Q ++ +         +A+      S         +L+ +L+ V DP N G I
Sbjct: 60  IEVEFVSEQVLEAMADTVTPQGVIAVCRQFPTSVKDLLAGAPKLIAILEEVRDPGNAGTI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A   DG+I T R     +  + ++ +G+L H+P     +L   L+++     + I
Sbjct: 120 IRAADAAGADGVILTGRSVDLYNPKVVRATTGSLFHLPVAVGVDLEPVLERVKGADLRVI 179

Query: 211 GLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                           + +   A + G E +GL  +    A  +  + + G  +++N++ 
Sbjct: 180 AADIKGGDLLAARNDGVLDHPTAWLFGNEARGLTDEHYALADWVISVPIYGHAESMNLAT 239

Query: 268 AAAVALYI-TQNHFAK 282
           AA+V LY       +K
Sbjct: 240 AASVCLYESAFAQRSK 255


>gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 266

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S   K +H  +     + G+  +  A  +      QL+  +N       D 
Sbjct: 9   SNPTVKYLRSLRDK-KHRKRAGQFLVEGLRLLEDARVSGHVP-RQLVMAENRDRHDLVDR 66

Query: 86  NL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V T  P  + KI GK      + +      S       ++ + +V   +
Sbjct: 67  LEGEVGAAGGEVITTTPDILSKITGKSNSQSVVGVFDELDTSLARLDRGSANIWLVAQDL 126

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+  A    G+I     +   SA   +++ GA+      +     + +  
Sbjct: 127 RDPGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRASMGAVFTQGMAQARWD-EFVPW 185

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +     Q +  S     P           +++G E +GL    +        + M G   
Sbjct: 186 LRGGPGQLVAASLRDAVPYRGAAYQAPCFILVGNESQGLPEAYEAECDLRVTMPMKGRAD 245

Query: 262 ALNVSNAAAVALYIT 276
           +LN + A AV  Y  
Sbjct: 246 SLNAAVAGAVLAYEV 260


>gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 248

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 12/240 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P           L    +  LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  + +  F  +  +   +K  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  +A+++GAE  GLRP TQ       ++ M G +++LNVS AA +ALY      
Sbjct: 187 QKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246


>gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
          Length = 246

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   +          V    +  +   +   QG+      
Sbjct: 40  VQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+++     +             S       +    +   L++G EG+G+
Sbjct: 150 QGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 277

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 104/268 (38%), Gaps = 13/268 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNA 77
           ++   K +    +K R+  + +  F+ G   +  A+              I  L  +   
Sbjct: 12  SNPKVKWVAGLKEK-RNRDEEKKFFIEGYREIKKAITGNPNSPIPCLPVNITSLFISPEC 70

Query: 78  LARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQL 134
               + ++ +     P+  +P +  +KI  ++     +A+   P  ++         +  
Sbjct: 71  FLGENEESLIASIRCPIFELPRKIFEKISYRDRPDGLIAVAETPSAMVPWNSLQTSETNP 130

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++++ V  P N+G ILR+A      G++                AS        + I +
Sbjct: 131 ILIIEGVEKPGNLGTILRTAEGAGV-GLVIVTDPRIDLFNPNVVRASTGTIFTLPVYIGD 189

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           LT+ L +    G++   ++ + K         +K   + G+E  GL P  +E A +  +L
Sbjct: 190 LTEVLTEFKKQGYKRYAVTPEGKTLYTSVNLKEKSVFLFGSEQYGLSPLAKELADTTLYL 249

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G   +LN++ +  + LY +    +K
Sbjct: 250 PMFGEADSLNLAMSCGIVLYESIRQRSK 277


>gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 275

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 87/257 (33%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+   + +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGHQPLSLLMERKQITGPAQEILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P          +++ + VL+ + D  N+GA
Sbjct: 78  DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I RSA A + D ++ T            + + G +  +P+ +I        +  S     
Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                                     K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWQLGR 274


>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 263

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K++++  Q  +       + + G H V  AL +  + +  +  ++    R++ 
Sbjct: 10  SRTNPRLKQLRAAFQ-GQARLSSGLIAVEGEHMVEEALKSG-QALKTVFLSE----RMEL 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142
            A +P    V +V       I          AL   P  S           L+++   + 
Sbjct: 64  PAYVPASVEVVSVASDVFASIAETRTPQGIAALLVPPAHSVEKMLEGPGEALILIAVGLQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++RSA AF   G++TT       +    ++++G++  +P    +       + 
Sbjct: 124 DPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAMRASAGSVFRLPVAVATPDAMETLEQ 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +    D    + +       A+++G EG GL       A     +  PG +++
Sbjct: 184 QGIKL--LAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPCPGWVES 241

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + A ++ LY      
Sbjct: 242 LNAAVAGSILLYEASRQR 259


>gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 278

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 102/276 (36%), Gaps = 9/276 (3%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I +   ++       +   K  ++   +SR   +     L GVH + AAL        
Sbjct: 3   DIITNKFSNYPVITSDKNPTAKLAKALLNQSRQRKKSGQTVLEGVHLIEAALQADFLPEQ 62

Query: 70  QLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            ++     +       L   +N      V  V       I    +  + +A+   P    
Sbjct: 63  IIISYSGLSHPEVQTLLSSLSNYNLDNKVTVVSDSVYQGITTLGSGVEIMAIVKVPQHDL 122

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  +   ++L+ V D  N+G +LR+A A     II TK  + + S    ++  GA 
Sbjct: 123 QALKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQ 182

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +         + L  +    F T    S +   + ++  N  +A ++G EG+G+    
Sbjct: 183 FGLTIYEGIEADEVLAYLRLPVFATS---SHTDNIIYKQNLNRPVAWVMGHEGQGVCDDI 239

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + AT    L  P   ++LNV+ A A+ +Y T    
Sbjct: 240 MKLAT-PVALPQPNGQESLNVAIAGALCMYETLRQR 274


>gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 269

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 24  MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 62

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 63  VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 115

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +   +    + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 116 REKIPAELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 172

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    +  AL++G EG+G+
Sbjct: 173 QGSHFHLPVYRMDTADFIRLAQSSRLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 232

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 233 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268


>gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 258

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +KIF L  T+ ALA  D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        V  + + K +                 + +        L++  +++ D
Sbjct: 67  QKVMELHQGHVFVISEVLYKDLSTLGTTLPCLAIIDLPKTASTIDFGVDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       L + L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQ 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +          ILG EG+G      E A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 268

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+  +      L K+          
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                          ++A+++G EG+GL  KT   A  +  + M   + +LNV+ AAAVA
Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAAAVA 259

Query: 273 LYITQ 277
            +  +
Sbjct: 260 FWQLR 264


>gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
 gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
          Length = 261

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 83/253 (32%), Gaps = 5/253 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83
           +   K +++ + + +   +       G+  V+  +         +   + A     R   
Sbjct: 9   NPTVKAVRALHLR-KDRDETGLFLAEGLKHVTEGVELGHAPRILMYGPEAASHPLLRKAA 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           DA       V  V  + + K+  ++     + +        +    + +   + L  V D
Sbjct: 68  DATRRAGGEVIEVTQEILAKVSRRDNPQAVVGVFPQVYRPLSEIDPKAADCWVALHRVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A  C G +          +V A  A+        +      +      
Sbjct: 128 PGNLGTIVRTADAAGC-GGVILVGECCDPYSVEAVRATMGSVFAVPLSRCGEAEFAAWRK 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            W    +G    +              +++G E +GL P+          + M G   +L
Sbjct: 187 GWPGSVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEMAALPDLNVKIPMRGRADSL 246

Query: 264 NVSNAAAVALYIT 276
           N+S A  + +Y  
Sbjct: 247 NLSVATGIMIYAA 259


>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 245

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +  + RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   +G+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFNGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 TYHERLALVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 249

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + I  + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246


>gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
 gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
          Length = 264

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 20/282 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS  +                  +R  K  +S  +K +   Q   + L G   +  A
Sbjct: 1   MTVISSTQ------------------NRYVKLYRSL-EKRKIRIQQNLVPLEGEKLIRDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +          L          +   L    PV ++  +  D+    ++    LA+   P
Sbjct: 42  IERRVLPEVVYLREGLTPEEFPFLQALESQVPVLSIAEKLFDRTAFTDSPQGILAVAPRP 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T   V+   LL+V D V DP N+G +LRSA A   DG I       + +    ++A
Sbjct: 102 KSDLTDLFVKKPALLLVADGVQDPGNLGTMLRSAAAAGADGAILLPGTVDATNPKALRAA 161

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA      +  +N  D L  +   G   +  ++ ++   ++   N  +A+++G EG G+
Sbjct: 162 MGAYF-ALSVVETNHQDCLSALAGHGVSLVTTAARAEVAYDRYDWNTPVAVVIGNEGSGV 220

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            P   E A S   + M G +++LN + A +V  +       K
Sbjct: 221 SPAMAEAAKSRVSIPMAGAVESLNAAIAMSVIFFEAARQRRK 262


>gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 258

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        +  + + K +                 + +        L++  ++V D
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLGIIDLPKTASTIDYSVDTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      E A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056]
 gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058]
 gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059]
 gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
 gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
          Length = 258

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        +  + + K +                 + +        L++  ++V D
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      E A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae
           BGR1]
          Length = 250

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTDFLQTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+            L+  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D+   L 
Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAPASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   + +L M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 247

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D  VG
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNSQALDG-VG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+A   A   + + +             LL+VLD V DPHN+GA LRSA A   
Sbjct: 66  GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++   
Sbjct: 126 TAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+     
Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis
           DSM 16823]
          Length = 274

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 13/269 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            K  R  R     Q      R   +     +YG+  V  A+ N   +I ++L  K     
Sbjct: 4   KKNDREERGGGFNQDKRNFERKPKEDPTDIIYGIRVVIEAIKN-EVEINKILIQKGIDKD 62

Query: 81  LDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--- 134
           L  +         + ++ VP + ++K+      HQG+   T+P+    ++ + +  L   
Sbjct: 63  LFEELRTVLTGKEYQLQFVPVEKLNKLT--VNNHQGVIAFTSPVEYKNIEELCDQWLSEG 120

Query: 135 ----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               ++VLD + D  N G I R+A     D I+   + S   SA   K+++GAL  IP  
Sbjct: 121 KEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIPVC 180

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +   L ++L  +   GFQ +  +  SK   E        A+I+G+E  G+     + +  
Sbjct: 181 KTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMSDV 240

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G I +LNV  A  + LY     
Sbjct: 241 RLSIPMAGDISSLNVGVATGMILYERLKQ 269


>gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 260

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 108/257 (42%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++    KS+   + +     G+  V+     P+ ++ ++  +++   R   + 
Sbjct: 6   SNPQMKRIKELLNKSKQRRKEKCFVAEGIRMVAE---TPADRLEKVYVSES-FYRHPPEL 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V  Q   ++   +     +A+      S      +   LL+ L+++ DP 
Sbjct: 62  RGLDLSKALIVDDQVFRQVSDTQTPQGIMAVVRQQENSLDAIMKQPDALLLFLENIQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A      GII ++  +   +    ++  G+L  +P++ + +  + ++   + 
Sbjct: 122 NLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMGSLYRMPFVYVDDFCETIRMAKAQ 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +        K   + E        ++G EG GL  +  ++AT    + M G +++LN 
Sbjct: 182 GIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQEAADSATDYIRIPMGGQLESLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           + AAAV +Y       +
Sbjct: 242 AVAAAVLMYEANRQRRE 258


>gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi
           DSS-3]
          Length = 257

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 7/247 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NP R+  +L+ T NA  +L    +       +  
Sbjct: 10  KEQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKLAEAIDAA-GIEPELA 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153
             +     +   +VHQG ALE  PL   +L  V     +  +++LD V DPHN+GAILRS
Sbjct: 69  DARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVILLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++   G+  +GL 
Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYLVLGLD 188

Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++ + +E       +  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 189 GEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQ 277
           +ALY ++
Sbjct: 249 IALYASK 255


>gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 249

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246


>gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 252

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 10  WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 69

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 70  QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 129

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 130 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 189

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 190 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 249


>gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 267

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 13/277 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL D            +  +     ++R  S            ++ A
Sbjct: 1   MPIIE------IHSLTDPRIE-------IFSTLTEAQLRNRIESDKGLFIAESPKVINVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + + ++ G       L     P
Sbjct: 48  LNAGYEPLALLCEQKHITGDAADIIERYDDIPVYTGARELLARLTGYILTRGVLCAMHRP 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +  + ++ + V++ V D  NIGAI RSA A   D I+ T+      +    + +
Sbjct: 108 TPKSVEEICKGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +    + L K+                         K+A+++G EG GL
Sbjct: 168 MGSVFLIPWAWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R +T   A  +  + M   + +LNV+ A+A+A +  +
Sbjct: 228 RNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264


>gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240149]
          Length = 234

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 9/225 (4%)

Query: 64  PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-- 118
             + I +L   +   +   R   +        V       ++ I  K A HQG+      
Sbjct: 4   NPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAIS-KGARHQGVVGFIDA 62

Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A 
Sbjct: 63  SKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNAT 122

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           ++K ASGA E +PYI ++NL   L+++  +G   IG        L      D  A ++G 
Sbjct: 123 VSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGN 182

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 183 EGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 246

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTEAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 285

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 3/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + +S    +     + G ++V AA+   S     +                
Sbjct: 19  PRIVNAAKLH-RSAARKKAGVFLVEGENSVEAAIATGSATDVYVTLAAAERFEPIIRTAG 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +  +    +          A+    L S         QL+ V    NDP N 
Sbjct: 78  YLNIYVHYITDKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPQLVSVPVETNDPGNA 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205
           G ++R A A   D ++     +  +S   A++++G+L H+P  R +N+ D     +    
Sbjct: 138 GTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGL 197

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    +       EI     A + G E  GL  +    A     + + G  ++LN+
Sbjct: 198 QILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNL 257

Query: 266 SNAAAVALYITQN 278
           + AA++ +Y +  
Sbjct: 258 ATAASICMYESSR 270


>gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 247

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D  VG
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKVNSQALDG-VG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+A   A   + + +             LL+VLD V DPHN+GA LRSA A   
Sbjct: 66  GSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S S +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++   
Sbjct: 126 TAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATAS 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+     
Sbjct: 186 LYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
 gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
          Length = 363

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 11/250 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97
           R      +  + G + V  AL          +    +   RL     L       V  V 
Sbjct: 112 RPRRTEGDELVVGRNAVVEALRAGVPSSTLFIAGGLDFDERLADARRLAGRAGIAVADVG 171

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
              +D++ G  A HQGLAL   P      D            LL+ LD V DP N+GA++
Sbjct: 172 RTDLDRMCG-TAPHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAVV 230

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF   G++  +R +   +A   K+++GA   +P  R +NL   L    + G   +G
Sbjct: 231 RSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVVG 290

Query: 212 LSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L++DS+  +++  +  D + L++G+EG+GL    ++       + M G +++LN   AA 
Sbjct: 291 LAADSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAG 350

Query: 271 VALYITQNHF 280
           + L       
Sbjct: 351 ITLAEIARRR 360


>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 259

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 5/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             ++   K +      +++  Q     L G H + A L + ++   Q+   ++ L   + 
Sbjct: 6   SPHNTQLKHLAKLGVSAKYRRQYRQTVLEGAHLLDALLQSGAQP-QQVFIAQSRLHTPET 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            + L              D+++ K +         + +  P   A   +   +VL+ + D
Sbjct: 65  QSLLARL--PSENTAAVEDRLLAKASALSDGGGILSLVEIPETAAPPQNGDCVVLERIQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ILRSA A     II  +  +   S  + ++A GA   +     SNL    Q   
Sbjct: 123 PGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLRLHPASNLAVWRQTYR 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F      + +  PL +       A + G EG GL    + TAT    + M G  ++L
Sbjct: 183 EPLF--ATALTANSTPLYRLNLRPPCAWLFGNEGGGLTAAARNTATRTVKIPMSGATESL 240

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA V L+      ++
Sbjct: 241 NVAMAATVCLFEQLRQRSE 259


>gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 253

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 15/248 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100
            +   +YG+  +  A+ +  + I +L   +         +     +     P++TVP Q 
Sbjct: 2   SKLEIVYGIRPLIEAIRS-KKTISKLFFQRGFRKISNAYKELISLSKKENIPIQTVPKQK 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153
             ++  K   HQG+    +P+ +  +            + LL++LD + D  N G+I+R+
Sbjct: 61  FYQL--KNKNHQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDVRNFGSIIRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           +     D II  K+Y+    +   K++SGAL  +P  +  N+ + ++ + + G + +  +
Sbjct: 119 SACVGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMNSGLKIVSAT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             S         +   ALILG E KG+ PK  E +   A +     I +LNVS A  V L
Sbjct: 179 EKSNIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVIL 238

Query: 274 YITQNHFA 281
           Y       
Sbjct: 239 YEVFRQRK 246


>gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 249

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQR 246


>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 283

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 22/273 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-------------SRKIFQLL 72
                K ++   +++    +       G   V  AL                +  + ++ 
Sbjct: 10  RSPRIKGVRRLAKRT-FRQRERRFLAEGPQAVREALAAAVDGAQGRSPHGGAASGVVEVY 68

Query: 73  ATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           AT  A+ R     DA      P   V    + ++         +A      +   L+ V 
Sbjct: 69  ATAEAMQRHIDLVDAARAVDVPTHRVSLDVMSELAQTVTPQGVIA--VCEFVDVPLERVG 126

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +L  VL HV DP N G +LR+A A   D +I T       +    ++++G+L H+P +
Sbjct: 127 DVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASAGSLFHLPVV 186

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQE 246
               +  A+  +   G +        ++ L         +  +  + G E  GL  +T  
Sbjct: 187 VGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGWVFGNEAWGLPEETVA 246

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + + G  ++LN++ AAAV LY T   
Sbjct: 247 LTDGAVSVPIYGGAESLNLATAAAVCLYTTARQ 279


>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 246

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 96/241 (39%), Gaps = 7/241 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDK 103
            E   ++G+  V  A+         ++  +    L++        H   V+ VP + +D+
Sbjct: 2   KEKEMIFGIRAVIEAIEAGKEIDKVIIRRELQGDLSKELLALLKSHDVAVQRVPNERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              K        L              L        ++VLD + D  N GAI R+     
Sbjct: 62  FTRKNHQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGITDVRNFGAIARTCEVAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + I+   + S + +A   K+++GAL  IP  +  NLT A+Q + + G + +  S     
Sbjct: 122 VNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQFLRNSGIKVVAASERGAD 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      IA ++GAE  G+  +    A ++  +   G I +LNVS AA V +Y    
Sbjct: 182 IYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIR 241

Query: 279 H 279
            
Sbjct: 242 Q 242


>gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
          Length = 258

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +  H   V  +       +         L+      L  T   +  S   ++L++V 
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNT---LSCLAIIDLPKTASTIDYSVDTLILENVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K 
Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T    S S    +    +     ILG EG+G      E A     +  PG  ++
Sbjct: 184 DIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++  +      
Sbjct: 240 LNVAIAGSICFFEMVRQR 257


>gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 249

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246


>gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
 gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
          Length = 257

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 7/252 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     +++R  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L          
Sbjct: 5   KWVVAKEQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFA-GI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIG 148
             +   P+     +   +VHQG ALE  PL    L      R    +++LD V DPHN+G
Sbjct: 64  TPEIADPRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF 
Sbjct: 124 AILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFL 183

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++   +E      ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNV
Sbjct: 184 VLGLDGEADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNV 243

Query: 266 SNAAAVALYITQ 277
           SNAAA+ALY ++
Sbjct: 244 SNAAAIALYASK 255


>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
          Length = 258

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  QN+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFQNN 257


>gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
 gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
          Length = 247

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 12/246 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVPPQTID 102
           + +   ++G+  V  A+         +L    +  L +  +        P + VP     
Sbjct: 3   KYKQECIFGIRAVIEAIQQEKEIDKVMLKQGVRGELFQQLFSLIRERNIPFQYVPEDVFK 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                   HQG+  E +P+    L       +A      +++LD V D  N GAI+RSA 
Sbjct: 63  PFAD--RNHQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAE 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSS 214
               D +I   + S   S+   K+++GAL H+P  R+ N      +     G +    + 
Sbjct: 121 CAGVDVVIIPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATE 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++K           A+I+G+E KG+  +    AT    +   G I++LNVS AAAV L+
Sbjct: 181 KAEKFYTGADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLF 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 EVVRQR 246


>gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 267

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 5/257 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + +S    +     + G ++V AA++  +     +  T+ A  +       
Sbjct: 14  PRIVNAAKLH-RSSARKKANAFIVEGDNSVDAAVSTGAATD--VFVTERAADKFADIVTA 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V    +  +    +   +      AL T  L S         +LL V    ++P 
Sbjct: 71  AGYMDVYVHPITDRAAKSLSDTQTTMGIFALCTPVLWSAGKILNGKPKLLSVPVETSEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I          + ++++++G+L HIP  R +N+ D L K+ + 
Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARDTNIKDVLGKLRAS 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             Q +  +      L++       A + G E  GL  +  + A     + + G  ++LN+
Sbjct: 191 NLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRVSIPLRGRAESLNL 250

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ LY +     K
Sbjct: 251 ATAASICLYESAKAQNK 267


>gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 255

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A      L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246


>gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150]
          Length = 246

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 31/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S 
Sbjct: 93  REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISRLSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  RI           S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRIDTADFIRLAQSSSLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+    A  + H+ M G  ++LNV+ AA + ++  +
Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246


>gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 258

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +KIF L  T+ ALA  D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        V  + + K +                 + +        L++  +++ D
Sbjct: 67  QNVMELHQGHVFVISEVLYKDLSTLGTTLPCLAIIDLPKTASTIDFSVDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   I+ T+  +   S  + ++  GA   +       L + L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIVCTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQ 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +          ILG EG+G      E A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
          Length = 245

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +    RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R +      +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
 gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
          Length = 323

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 53  GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G + V   L     +  ++  + T+ +   +            +  VP   +D++     
Sbjct: 84  GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQLAADAGISILEVPRTDLDRLSA-NG 142

Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +HQG+AL+  P      D             LL+ LD++ DP N+GA++RS  AF   G+
Sbjct: 143 LHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGV 202

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S S SAV  ++++GA   +P  R +NLT  L+   S G Q +GL ++    L+ 
Sbjct: 203 VIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAEGDTTLDD 262

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + +++G+EGKGL    +E   ++  + M G +++LN S AA V L       
Sbjct: 263 FDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 320


>gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 249

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ GV+ V++++ N +  + ++L     KN       +        V+ V  Q +D + G
Sbjct: 7   WIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALDGVGG 66

Query: 107 KEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +       A   A  L         ++A     L+++LD V DPHN+GA LRSA A    
Sbjct: 67  QVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVT 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +++  L
Sbjct: 127 AVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+      
Sbjct: 187 YSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQR 246


>gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 312

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87
           + +     S  T  PE   +YG HTV AAL N  R + ++        +   +       
Sbjct: 38  RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDH 140
                V     Q +D+I  + A HQG+  +  P     L        +  +  +L+ +D 
Sbjct: 97  AKGAIVDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDG 155

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GAI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL     
Sbjct: 156 ITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFT 215

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++ S GF   G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+ 
Sbjct: 216 ELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVT 275

Query: 261 KALNVSNAAAVALYIT 276
            +LNVS A  +ALY  
Sbjct: 276 PSLNVSVATGMALYEI 291


>gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 307

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87
           + +     S  T  PE   +YG HTV AAL N  R + ++        +   +       
Sbjct: 38  RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDH 140
                V     Q +D+I  + A HQG+  +  P     L        +  +  +L+ +D 
Sbjct: 97  AKGAIVDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDG 155

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GAI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL     
Sbjct: 156 ITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFT 215

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++ S GF   G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+ 
Sbjct: 216 ELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVT 275

Query: 261 KALNVSNAAAVALYIT 276
            +LNVS A  +ALY  
Sbjct: 276 PSLNVSVATGMALYEI 291


>gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405]
 gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1]
 gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408]
          Length = 246

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +++ +  I            L   A     F  V  V  + +  +   +     +A    
Sbjct: 40  VSSGAELIRI--------FALAEYAEQLADFSLVIFVSSEILADLADSKTPQGIVAEVAF 91

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L+        + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S
Sbjct: 92  ERKEIPLELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRS 148

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+  H+P  R+           S         S +          +   L++G EG+G
Sbjct: 149 MQGSHFHLPVYRMDTADFIRLAQSSRLPILASTLSSTSIDYRNVDSKESFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P+  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 249

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDSLEKLAGMP 67

Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +        L       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  +   P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q   +  + +++GAE  GLRP TQ        + M G +++LNVS A  +ALY      
Sbjct: 187 QQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQR 246

Query: 281 A 281
            
Sbjct: 247 T 247


>gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 245

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 95/249 (38%), Gaps = 8/249 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPF 91
           M+  +  ++   +     L G+H V+A L+        L++ ++ A   +        P 
Sbjct: 1   MKVLSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTPAQCLVSERHLAHPEVAPLLARVDPQ 60

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V  +      ++     V  G+ L             R     ++LD + D  N+G+IL
Sbjct: 61  HVILLADSLFAQLT---TVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQDAGNVGSIL 117

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A     +  T   + + SA   ++  GA  H+  +          ++H      + 
Sbjct: 118 RCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFHLNIVEHCTFESMHARLHVPL---LA 174

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            SS ++  +        +  + G EG G+  +     T+   +  PG +++LNV+ AAA+
Sbjct: 175 TSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMESLNVAAAAAI 233

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 234 CLFEAVRQR 242


>gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
 gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
          Length = 249

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+ +     K+F     +  +          +  P   VP + ++++ G  
Sbjct: 7   IFGLRPIIEAIESGKTIDKLFVQKGLQGEIFSQLRKLIAQYEIPTSYVPVEKLNRLTG-- 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   +++           +  L++LD V+D  N GAI R+A     D 
Sbjct: 65  KNHQGVYAFLSPIEFDSIENVLPQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGIDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   + S S +A   K+++GAL +IP  + +NL   +  +   G      S  S   L 
Sbjct: 125 IIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKTVDYLQQSGIVLAAASEKSDTYLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A+I+G+E  G+     + +  +  L M G   +LNVS A    LY      
Sbjct: 185 DVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243


>gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
 gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
          Length = 237

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 10/237 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG + V  ++         L   ++ L             PV+ +    +  +V  +
Sbjct: 3   EWIYGKNVVKQSIEEGMVLKLILQRKEDPLF----VLAQEKQIPVEILDRHKMTSLVKSD 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                 A      +    + V +       L+++LD + DPHN+GAILR+  A   DG+I
Sbjct: 59  RHQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGVI 118

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +A +AK + GA++ +    ++NL+  ++ +   G+  +  ++   K     
Sbjct: 119 FKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLKKRGYWVV-GTAMEGKDYRSL 177

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    L++G EGKG+     +      HL M G I +LN S +  + LY   N  
Sbjct: 178 KYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIYNKR 234


>gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis
           HAW-EB3]
          Length = 246

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +G+H V A L +   ++ ++       +            +   V+T   + +D+     
Sbjct: 8   FGIHAVEAVLKHSPERVIEMWVQAGRDDQRLATLLQMAAEYGVSVQTSARKVLDEKSD-N 66

Query: 109 AVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+      +          L     +   ++LD V DPHN+GA LR+A A    G+
Sbjct: 67  GQHQGVLARVKAVKQLNDNDLLALVEKTETPFFLILDGVTDPHNLGACLRNADAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++   L +
Sbjct: 127 IVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEADSDLYK 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAE KGLR  T+E+  S+A + M G + +LNVS A+ + L+      
Sbjct: 187 TDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEAVRQR 244


>gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 325

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 53  GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G + V   L     +  ++  + T+ +   +            +  VP   +D++     
Sbjct: 86  GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQRAADAGISILEVPRSDLDRLSA-NG 144

Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +HQG+AL+  P      D             LL+ LD++ DP N+GA++RS  AF   G+
Sbjct: 145 LHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGV 204

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S S SAV  ++++GA   +P  R +NLT  L+   S G Q +GL ++    L+ 
Sbjct: 205 VIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAEGDTTLDD 264

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + +++G+EGKGL    +E   ++  + M G +++LN S AA V L       
Sbjct: 265 FDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 322


>gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
 gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
          Length = 265

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 90/263 (34%), Gaps = 13/263 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K++ +  ++SR    P    L G   +  ALN+      ++   +N   +    
Sbjct: 6   KNNPKVKEVVAL-KQSRSRKGP-LFLLEGFREIQKALNSGYE-CERIFCGENVSEKEQSF 62

Query: 85  ANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMV 137
            N     P++      + + K+      H    +        + +             ++
Sbjct: 63  LNRIQKTPLEKIYCSEEILSKLS--YKEHHDNFIAVMKKRWWSREEFLGQKKNPLPFYLI 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V  P N+GAILR A     DG+I         +  + +S+ G +  +P    +    
Sbjct: 121 IEQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRSSLGTVFTLPIWSATLDEV 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                             +      E  N  +AL+ G+E  GL     +   +   L M 
Sbjct: 181 LQTIAEEKWQVFATS-PRASTMYFCENYNQPLALVFGSEKDGLTSHWLKGNFAKISLPML 239

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G + +LN+S A +   Y      
Sbjct: 240 GQVDSLNLSTAVSAVAYEVIRQR 262


>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
 gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
          Length = 275

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 5/249 (2%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  Q+     +       G + V AA       I +L  T+ A  R +         PV 
Sbjct: 27  AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +    +         +A+   P            +L+ V   + +P N G ++R A
Sbjct: 84  VVTERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIA 143

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGL 212
            A   + ++         +    ++++G++  IP I   + + A    +          L
Sbjct: 144 DAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQVLASVL 203

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       ++     A + G E  GL  +    A     + M G  ++LNV+ AAA+ 
Sbjct: 204 DGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAIC 263

Query: 273 LYITQNHFA 281
           LY +    +
Sbjct: 264 LYQSARALS 272


>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
           DSM 17093]
          Length = 241

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG   V+ AL      + +L           +            ++ VP   +D+ + 
Sbjct: 2   LIYGKQAVAEALREGG--VLRLFVAHGVQPGTVKQFEALARKAGVTLERVPRTQLDQAL- 58

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+  E   L     +             LL++LD + DPHN GAI+RSA     
Sbjct: 59  KTTRHQGVVAELPELSYADPEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLGA 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++T +R S   SAV+AK ++GA  H+P +++ NL   ++ + + G    G S D+   
Sbjct: 119 HGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKARGVWLYGASGDAAAL 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +Q   +   AL++GAEG G+R   +ET   +  + M G + +LN S AA + LY   + 
Sbjct: 179 PQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAALSS 238

Query: 280 FA 281
            +
Sbjct: 239 RS 240


>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 249

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 9/246 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           + +  Q  +   Q     + G+ +V+  L++    +  L  T N   ++     +PH   
Sbjct: 9   LITSLQHKKFRKQHGLFVVEGIKSVTEFLSSAYD-VHALFYTANVTTKV---VKIPHNIK 64

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
              +      KI   ++    LAL   P           +Q  +VLD V DP N+G I+R
Sbjct: 65  SYELTDNEFSKISQLKSPQGILALVRLPKEKTPEQLDFANQFTLVLDDVQDPGNLGTIIR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A  F    I+ +     + +  + ++  G+L           +             +  
Sbjct: 125 TAEWFGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDG 184

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +S  +    +E       +++G EG G+  K  +       +   G  ++LNV+ A  + 
Sbjct: 185 TSIYETRWGKEGL-----ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIF 239

Query: 273 LYITQN 278
                 
Sbjct: 240 CNEIAR 245


>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
 gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
          Length = 318

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKT 95
            R  +  +  ++ G ++V  AL      +  +   + A      R  +         +  
Sbjct: 63  PRKRAAGDAEWIIGRNSVVEALRED-VPVNGIYVAEGAERDGRLREAFLLASEKGISLLE 121

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148
           V    +D++ G    HQGLA           D        +    L++ LD V DP N+G
Sbjct: 122 VTKVELDRLTGFNG-HQGLAARIPAYEYAHADDLIDRAAEIGEKPLIVALDQVTDPRNLG 180

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA AF   G++  +R +   +A   K+++GA   IP  +  NLT  L+     G  
Sbjct: 181 AIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTVNLTRQLKAYQDAGCM 240

Query: 209 TIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +GL  +    L +    D      + +++GAEG GL    QET   +  + M   +++L
Sbjct: 241 VVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETCDQIVSIPMANSVESL 300

Query: 264 NVSNAAAVALY---ITQN 278
           N   AA+V LY     + 
Sbjct: 301 NAGVAASVVLYAVAEARR 318


>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
 gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
          Length = 275

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 5/249 (2%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  Q+     +       G + V AA       I +L  T+ A  R +         PV 
Sbjct: 27  AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +    +         +A+   P            +L+ V   + +P N G ++R A
Sbjct: 84  VVTERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIA 143

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGL 212
            A   + ++         +    ++++G++  IP I   + + A    +          L
Sbjct: 144 DAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQALASVL 203

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       ++     A + G E  GL  +    A     + M G  ++LNV+ AAA+ 
Sbjct: 204 DGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAIC 263

Query: 273 LYITQNHFA 281
           LY +    +
Sbjct: 264 LYQSARALS 272


>gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
 gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
          Length = 298

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 15/291 (5%)

Query: 1   MNLISKKKSEKIFSLK---DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57
           M+   ++ + K  S K        K R N + Y K + + +      Q +   ++G   V
Sbjct: 1   MSAKQRRDNSKPDSKKPYSRKMENKKRENQKPYGK-KPYIKMPDVRKQIDEDLIWGRQPV 59

Query: 58  SAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
              L    +K  ++  ++ A      +          P + V    +D++   E  HQG 
Sbjct: 60  LDLLQYSPQKCLKVWISERAHPSFSGEVMTLARSTKVPFQKVASTLVDEMCPGE-NHQGA 118

Query: 115 ALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             +   +           L       LL+VLDH+ DPHN+GAI+R++ A     ++ +KR
Sbjct: 119 VAKITMVEQLDMEDFLPTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKR 178

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S      + K ++GA   +P I ++N+   + ++   GF  +GL  ++ + L      D
Sbjct: 179 RSALPGGTVVKVSAGAALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPD 238

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K +L++GAEG+GL     +    +  + + G   +LN   AAA+ ++    
Sbjct: 239 KSSLVVGAEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWAR 289


>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 256

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++   +     A               V+  P   +D++ 
Sbjct: 3   VVYGVNQVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+             LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++  ++D ++
Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVAFAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +       AL+LG+EG+GLRP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 ALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
          Length = 251

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIV 105
           F++G H     L N  + KI ++                        V+ VP   +DK+V
Sbjct: 8   FVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67

Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             +A HQGL L  +      LD        + +  L++LD + DPHN+G+ILRSA A   
Sbjct: 68  -PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + +  
Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY   N+
Sbjct: 187 RYWDTK-GKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNN 245


>gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 274

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 10/278 (3%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           K  + KI  +  S +      +   K +Q    K+      +   + G+   + +L   +
Sbjct: 2   KSYNNKISRIITSTH------NPRIKNIQKLRIKAYERKSQKLFIIEGIREFNLSL-VGN 54

Query: 66  RKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             +  +      L + +     N+     +  V      KI  +E     LAL    L  
Sbjct: 55  YILDSVYICFELLEKSNSSEIINIIPSNIIYEVSKAVFQKIACRENHQGILALAKPKLHL 114

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                + N+ L++VL+ +  P N+GAILR+A A   D  I     +   +  + +S+ G 
Sbjct: 115 LADLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSIG- 173

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 I +++  + L  + S   Q       + K           A+++GAE  GL   
Sbjct: 174 CLFSNPIAVASNEETLAYLKSKSVQIFAAELTAFKQYYNTDFTSASAIVIGAEVNGLTNF 233

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + A     + M GII +LNVS + A+  +       
Sbjct: 234 WLDNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQRN 271


>gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
 gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
          Length = 326

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 15/277 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LA 73
               A+ +      K  Q    +S   +      + G + +  AL +  P+ +++     
Sbjct: 50  KRKEAREKLEAAQEKHAQRRTNRSGSRA---VEVIAGRNAIVEALRSDMPADRLYVASRL 106

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128
             +   +   +        V       +D++    +VHQG+A+         +D      
Sbjct: 107 DHDDRTKEILEIATERGIAVVEATRPELDELTD-GSVHQGVAMGVPAYEYLEVDDLLDAA 165

Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                + LL+ LD V DP N+GAILR+  AF   G+I  +R +   +A   K ++GA   
Sbjct: 166 ASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAAR 225

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQ 245
           +P  R++NL  +L+ +   G   +GL  D+   +       D + L++G+EGKGL    +
Sbjct: 226 VPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVRDLPFAADPLVLVVGSEGKGLSRLVR 285

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           ET  ++A + +   +++LN + AA + LY      ++
Sbjct: 286 ETCDAIAAIPISTTVESLNAAVAAGITLYEVAAARSE 322


>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
           MGAS315]
 gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
 gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 245

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +    RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 299

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 96/282 (34%), Gaps = 11/282 (3%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI- 68
            K+ S+  +    +          +   +++    +       G   V  A  +    + 
Sbjct: 9   PKVTSMAPAVPEPISSRSPRVLAARRLAKRN-FRGKERLFLAEGPQAVREAAAHREGPVP 67

Query: 69  --FQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
              +L  T  A  R              V     Q I  I         + +        
Sbjct: 68  TLVELFTTPEAAERYADIVGGARGAGARVHLASEQVIADISTTVTPQGLVGVCRFLDTPF 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                   +L+ VL HV DP N G +LR A A   + ++ T       +    +++ G+L
Sbjct: 128 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGL 240
            H+P      +  A+  +   G + +       + L+ E          A + G E  GL
Sbjct: 188 FHLPVAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGL 247

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
             +T+    ++  + + G  ++LN++ AAAV LY +     A
Sbjct: 248 PEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 289


>gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 255

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 134/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN ++YG HT  +AL N +R+  +LL T+N     + +            + V 
Sbjct: 2   KSSKANENCWIYGKHTCISALRNKNRRCIELLVTENFYREFEKEIKQCADSKGIKPRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            +  + ++ K   HQG+AL+ AP      +    +   +S  +++LD + D HNIG+ILR
Sbjct: 62  NKMFNDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   ++ +   G+   G 
Sbjct: 122 TSACFNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGF 181

Query: 213 SSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E+   +  + M  +I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
 gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
          Length = 449

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 54/329 (16%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
               + I       Y K   + +   +     +  ++  Q   + L G   ++ AL + +
Sbjct: 114 SDDKDDIKGQDVPRYTKAGPDDKRLGRATMLAKSRKYREQSGKIILEGRRLITDALESGA 173

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R      +  + +  L    +  +   V          +   + +           L+  
Sbjct: 174 RADTIFFSQVSNIEGLPLAGSRVNLVKVAYKDISLWSDVSTPQGIVGVFQRPKHENLNLD 233

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             +  +  + ++ D++ DP N+G ILRSA A +C  I+ TK         + +S +GA  
Sbjct: 234 QTSTDHLPVSLICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGAGAHF 293

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--------------------------- 218
            +P I           +       I   +                               
Sbjct: 294 RVPIISNIPWNSLPNYLSPNRSVHIADCNYVHNDNSQTQSSHGASENQSEYAQNEYDNDD 353

Query: 219 -----------------------PLEQEIKNDKIALILGAEGKGLRPKTQETATS----M 251
                                             AL++G E +GL  + +E  T      
Sbjct: 354 DISADHSKVMDETNAATDVRTVPYFSVNWTQGDYALVIGGETEGLSREAKELCTETGGRR 413

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M   I +LN + A +V L+  +   
Sbjct: 414 IFIPMSMGIDSLNAAMATSVILFEAKRQL 442


>gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 249

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALNN-PSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
             N F++G H     L N  S KI ++   +      AR  +         ++ VP   +
Sbjct: 4   TNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           DK+ G E  HQGL L  A       D          +  L++LD++ DPHN+G+ILRSA 
Sbjct: 64  DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G + +
Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY 
Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241

Query: 276 TQNHF 280
             N  
Sbjct: 242 AFNSR 246


>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
 gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
          Length = 252

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 107/274 (39%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R++                        + G H    A
Sbjct: 7   MIIITSKANNLIKKTKKLLQKKHRKS---------------------TYLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             N +     +   ++ L RL           V  V P+ + ++    +   G+  E   
Sbjct: 46  SANGA-VFEHIFVLEDFLERLPNQE------KVVVVTPEVLKELSDSPSSQ-GIVAEVQM 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S   +  +   L++  + + DP N+G ++R+A A +   +  + + +   ++   +S 
Sbjct: 98  DQSSLPETWQGPYLVL--EDIQDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R S          +         ++      +  + +  AL++G EG+G+
Sbjct: 156 QGSHFHLPIYRGSMADFLASFKQAGVRILATTLAEDSMDYRKIERPESFALVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +T + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 216 SEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMF 249


>gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 264

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 97/284 (34%), Gaps = 30/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGVHT 56
           M  IS                   R++  YK++    +  R  +        + L G+H 
Sbjct: 1   MKHISS------------------RDNPLYKQLMRLARGKREKNADGRPAQHVLLEGIHL 42

Query: 57  VSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             A L +       L   +       L   AN        +  P+    +     V  G 
Sbjct: 43  CQAWLQHMGEPELALFDLQRLETQTELQSLANALPAGLCHSCEPRLAAGLSQ---VEHGQ 99

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +    +    +   R +   + LD + DP N+G +LR+A A        +   + + SA
Sbjct: 100 GVYFLVMAPAPVLPARITHNCLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSA 159

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + +SA GA      + I    D            I  + D  +PL       + A + G
Sbjct: 160 KVLRSAQGAHF---VMTIHEHVDLAALRGCLAVPLIATALDDAQPLYDASLPAQCAWVFG 216

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG+G+ P     A     +     +++LNV+ AA V L+  + 
Sbjct: 217 NEGQGVDPVLLAQADMRVFIPQAADVESLNVAVAAGVCLFEQRR 260


>gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36]
 gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus
           sanguinis SK36]
 gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678]
          Length = 246

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLGDFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +   +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REAIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    D  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLAQSSSLPILASTLSSTSIDYREVDSKDSFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 315

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 28/289 (9%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPEN---------LFLYGVHTVSAALNNP---SRK 67
            A+ R  H+ Y + +  +++S                  F+ G ++V  AL         
Sbjct: 26  KAEDRPYHKAY-RAKQLSERSAAKRSTGRQADRIKVNAEFVTGRNSVVEALRAGIPAKAL 84

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---- 123
              +    +   R           P+       +D++    A+HQG+AL+  P       
Sbjct: 85  HVAIRIDVDDRVRESLKLAAEQGIPLMEASKPELDRMTD-AAIHQGMALQIPPYEYKDAV 143

Query: 124 ---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                          +   L + LD + DP N+GAI+RSA AF  DG+I  +R S   +A
Sbjct: 144 QLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMTA 203

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALIL 233
              K+++GA   +P  + +NLT AL+++ + G   IGL +     L         + +++
Sbjct: 204 SAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLDAGGDMDLPNFELATGPLCIVV 263

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+EGKGL    +E   ++  + +   +++LN S A  ++LY      A+
Sbjct: 264 GSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGISLYEVSRLRAE 312


>gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
 gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
          Length = 284

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           ++ AL    + +  L+  K+   +         
Sbjct: 26  FTRLTEAQLRNRLEPEKGIFIAESPKVIARALEAGYQPLSLLMERKHLEGQGREIMERCG 85

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P+L    +    ++ + VL+ + D  N+GA
Sbjct: 86  DIPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGA 145

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203
           I RSA A   D ++ T            + + G +  IP+ RI +      +        
Sbjct: 146 IFRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNA 205

Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                       +         +  DK+A++LG EG GL   T         + M   + 
Sbjct: 206 LGFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVD 265

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ A+AVA +  +
Sbjct: 266 SLNVAAASAVAFWQLR 281


>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
          Length = 245

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +  + RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
 gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 245

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +  + RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 277

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 12/261 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                 +   ++S    +     + G   V  A+      + ++ AT  A  R       
Sbjct: 12  PRVTAARRLAKRS-FRGKERRFIVEGPQAVREAIAY----LVEVYATPEAAERHADILAA 66

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV T   + I ++         + L                +L+ VL +V DP 
Sbjct: 67  ARAANLPVLTASDEVIAEMSDTVTPQGVVGLCRFLDSPFEEILRARPRLVAVLANVRDPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G +LR A A   D ++ T       +    +++ G+L H+P      +  A+  +   
Sbjct: 127 NAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVAVGVPVERAVSGLREA 186

Query: 206 GFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           G + +      ++ L+ E+         A I G E  GL   T+  A  +  + + G  +
Sbjct: 187 GARVLAADGAGERDLDSELDDRLLGAPTAWIFGNEAWGLPEATRALADEVVRVPIHGRAE 246

Query: 262 ALNVSNAAAVALYITQN-HFA 281
           +LN++ AAAV LY +     A
Sbjct: 247 SLNLATAAAVCLYASARAQRA 267


>gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 257

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 110/274 (40%), Gaps = 23/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I   ++ ++ +       K R+ +R Y                    L G H V  A
Sbjct: 1   MDRILSNQNNRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + K   ++AT+  +     D   PH  P   +  +    I G     QG+  E + 
Sbjct: 42  VKANA-KFHAVMATEEQMQTHLPDV--PHGVPAFEISEEVAKHIAG-TNTPQGIFAEISL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +  +    ++LD + DP N+G ++R+A A    G++  +  + + S  + ++ 
Sbjct: 98  PDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +    +        +         ++S +   +   + + ALI+G EG+G+
Sbjct: 158 QGSQFHLEVLTGDLVEWTDALTANNLSVYGSQLNESARSYREIESSTQFALIVGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     T+  ++ + G  ++LNV+ A  + ++
Sbjct: 218 SDELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 234

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +      +   L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   D
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANINYNEEDYPD 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 245

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 98/231 (42%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +    RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMAERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           ++   +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LIDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R +      +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 245

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +  + RL  +  L        V PQ + +
Sbjct: 22  HRKQSYLIEGWHLFEEAQKSG-QVFRHIFVLEEMVERLAGEQEL------VIVSPQVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        +VL+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIVAEVEIPKLAFPSDYKGKY---LVLEDVQDPGNLGTIIRTADAARFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCRELQEYETPILATTLSKKSVDYKSL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 270

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 89/257 (34%), Gaps = 5/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++    K RH  Q       G+  ++ A            A  +A   L    
Sbjct: 9   SNPLIKWVRDLRDK-RHRKQARQFLAEGLRILTEAKETGRLPTLLFFAKPSADHPLVRQL 67

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                          P  + K+ GK+     + +      +  +    +S + +V + + 
Sbjct: 68  VRAVELAGGEAIETTPDILSKLSGKDNPQAVVGVFEELGTTLDMLDRSSSGIWLVAERLR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+  A    G+I         S    +++ GAL  +P ++       L  +
Sbjct: 128 DPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASMGALFTVPIVKTEWQ-PFLDWL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                Q +GLS D++             L+ G E +G+          +  + M G   +
Sbjct: 187 RQGPGQLVGLSLDTETDYRSADYTAPTFLLTGNEAQGMPADYAAACDVLVKIPMLGKADS 246

Query: 263 LNVSNAAAVALYITQNH 279
           LN + A AV  Y     
Sbjct: 247 LNAAVATAVMAYEVLAQ 263


>gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1]
          Length = 252

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIV 105
            LYG + V  AL    R   +LL +  A                  PV+ +         
Sbjct: 4   LLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVPVERIDR-RELDRR 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            ++A HQG+ALE +      L+              L++LDH+ DP N+G +LR+A    
Sbjct: 63  LRDANHQGVALECSDYPYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVVG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSK 217
             G++   R +   +  +  ++SGA+EH+    ++N      Q  H+  +       +  
Sbjct: 123 VHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGVEDDERA 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++   +  +AL+LGAEG GL   T+E    +  L M G I +LNV+ A ++ LY   
Sbjct: 183 YEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHAW 242

Query: 278 N 278
            
Sbjct: 243 R 243


>gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str.
           13]
 gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
 gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
 gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
          Length = 257

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H  +     + G+  V  A+ +       +          D    +     +  +    +
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   E     + +             ++ +L++++D V DP N+G I+R+A A    G
Sbjct: 83  KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK      +    +S  G++ +IP +   +L              +      K    
Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y       
Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256

Query: 282 K 282
           K
Sbjct: 257 K 257


>gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 269

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 24  MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 62

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 63  VSSGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 115

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +   +    + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 116 REKIPAELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 172

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    +   L++G EG+G+
Sbjct: 173 QGSHFHLPVYRMDTADFIRLAQSSSLPILASTLSLTSIDYREVDSKESFVLVMGNEGQGI 232

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 233 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268


>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 290

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 104/288 (36%), Gaps = 15/288 (5%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +    S ++     +      R +   K +    QK ++  + +   L G      A   
Sbjct: 1   MMSPGSIRLEIKIMAQELITSRQNAAVKNVIKLKQK-KNRDREKQFVLEGTKLFMEA-EA 58

Query: 64  PSRKIFQLLATKNALA------RLDWDANLPHPFPVKTVPPQTIDKIV------GKEAVH 111
              +   +  T   +       +  +        PV TV     + +       G     
Sbjct: 59  WKVEFTAVFVTPQWIEGAEETVKSAFKRLKDTGIPVFTVDTSVFEAMSALKMPEGVLCTA 118

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
             +               +     ++LD V DP N+G I+R+A A   DGII + + +  
Sbjct: 119 HKIDASEKFFEKKCKKNGKKCLSYVILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADI 178

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA- 230
            +  + + A G++ H+P ++   L   +  +   G + IG S   K  L   +   K   
Sbjct: 179 YNEKVLRGAMGSVFHLPVLQTGALEKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVG 238

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +ILG E KG+     +    +  L M G  ++LNVS AA + +Y    
Sbjct: 239 IILGNESKGMSKSMADLCDDLYKLPMYGHAESLNVSVAAGILMYDIAR 286


>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 262

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 9/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G          P+ +I ++ A+++   +    +
Sbjct: 6   SNAQIKELAKLQKKSRLRDEKGIFLVEGPRMTEEI---PAERIEKVYASESFAKKNKEFS 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHV 141
                 PV+ +       +       QG+      L     D ++        L+VLD++
Sbjct: 63  EKLQ-APVELLTDTVFAYVSD-TKTPQGILAIVKRLNYTMNDLMQVKNQKAPHLVVLDNL 120

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I R+A A    GI+ +K      +  + +S  GA+  +P++ + +L + +++
Sbjct: 121 QDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVEDLPEKIKE 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G +T       +   ++E      A ++G EG GLR +  + A  +  + M G  +
Sbjct: 181 LQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRIPMEGEAE 240

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LN + AAAV ++       K
Sbjct: 241 SLNAAVAAAVLMFEAGRQRRK 261


>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
 gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
          Length = 257

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H  +     + G+  V  A+ +       +          +    +     +  +    +
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPELFLKINENIKLIQMNEALL 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   E     + +             ++ +L++++D V DP N+G I+R+A A    G
Sbjct: 83  KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK      +    +S  G++ +IP +   +L              +      K    
Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y       
Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256

Query: 282 K 282
           K
Sbjct: 257 K 257


>gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis
           AF2122/97]
 gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
 gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
           AF2122/97]
          Length = 402

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M    ++LN S AA V L
Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300


>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
 gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
          Length = 223

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 5/225 (2%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
            G H +  A  +   +I +L  T+  +        +        V  + +  +       
Sbjct: 2   EGFHLIEEA-ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQ 60

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
             LA+ T      + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +  
Sbjct: 61  GILAVMTLT----SEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADI 116

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            S  + +S  G+  H+P ++                      ++    L++  K +  A+
Sbjct: 117 YSTKVLRSMQGSNYHLPVLQKDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAI 176

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           I+G EG+G+  +         ++ M G  ++LNV  AA + LY  
Sbjct: 177 IMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 221


>gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 266

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTV 96
           +     +     + G + V+ AL      + +L  T+ A  R     +  +        V
Sbjct: 19  RGAERRKTGRFLVEGENAVAEALIAG--LVHELFFTEQAAERYPHLIERAVADGVRGSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + I  +         +A+     +         ++LL V   + +P N G ++R A A
Sbjct: 77  TDRAIRALSDTVTPPGVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVADA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D  I         +    +S++G+L HIP +R  N+   L  + S G Q +  ++D 
Sbjct: 137 VGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAADG 196

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L++         A + G E  GL       A     + + G  ++LN++ AA++ LY
Sbjct: 197 EVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256

Query: 275 ITQN 278
            +  
Sbjct: 257 ASAR 260


>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
 gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
          Length = 326

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 26/294 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++++         L R      ++ +  + ++ TS  ++  + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYRAKKALERRKAADPRLAARRRVAKFTSDSDDFVI-GRNAVLEALKAH 83

Query: 64  -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            PS  ++ L     +   R            +       +++I  +   HQG+ ++ AP 
Sbjct: 84  VPSSVLYILNRIEHDDRTREIIRLAGLEGLKILEADRLEMNRIA-RSVNHQGVIIKVAPY 142

Query: 122 LSPTLD--------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              +L                           L + LD V DP N+GA++RSA AF   G
Sbjct: 143 HYKSLQELVDRAEAKAQALGSASAKAKALAQPLFIALDGVTDPQNLGAVIRSAAAFGASG 202

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S S +A   K ++GA  H+P  R+ NLT A+  +   GF +IGL       + 
Sbjct: 203 VILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIDSLKERGFYSIGLDGGGTAQVG 262

Query: 222 QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 D + ++LG+EGKG+    +E   ++  + M  ++++LN S AA +AL+
Sbjct: 263 YSGFETDPLIVVLGSEGKGISRLVREQCDAIVSIPMTSLVESLNASVAAGIALF 316


>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
 gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
          Length = 252

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 26/278 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+                   R +    +++   Q      +       G   +  A
Sbjct: 1   MEHITS------------------RQNPLMVRIKKLGQSRALRREEGVFVCEGPKLIEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L   +     L A    L +      L        VP   +  +   E     LA+   P
Sbjct: 43  LKWGACVETILAAEGKPLPQ-----GLTGESRQVEVPDSLLRAVSSVETPQGLLAVCRNP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L+P         L++  D V DP N+G I R+A AF  DG++     +   S    ++ 
Sbjct: 98  GLTPPDKLTGGRYLVL--DGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA   +P       T       +          +    +       + A+++G+EG+G+
Sbjct: 156 MGACFRLPAWETDLETVRALLDGADIPLYATALREDTVDVRDVDL-KRAAVVIGSEGRGI 214

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +          + M    ++LN + AA V L+    
Sbjct: 215 SDEALALCRRTIKIPMRARCESLNAAMAAGVVLWEMCR 252


>gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 251

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 45  QPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           Q     +YGVH V+ +LN     K++     +                 +   P +T+ +
Sbjct: 10  QETTDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVSISWTPKKTLSE 69

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  + AVHQG  L  +      L  +        + L+M+LD + DPHN G+ILR+A A 
Sbjct: 70  MT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNFGSILRTADAT 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF   G   D  
Sbjct: 129 KVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGFWIFGTDMDGT 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +    + K+ALI+G+EGKG+    ++    M  + M G +++LN S AAAV +Y   
Sbjct: 189 PVQKWNT-SGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAVLMYEVF 247

Query: 278 NH 279
            +
Sbjct: 248 RN 249


>gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353]
 gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72]
          Length = 246

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ + K+ ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGA-KLIRIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S 
Sbjct: 93  REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S     +   S       +    +  ALI+G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSRLPILVSTLSSISIDYRKVDSKESFALIMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
 gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
          Length = 251

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 140/242 (57%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-----TVPPQTIDKI 104
            +YG+H V+AA  NP R+   L  T++ALA LD          ++      +  + +DK+
Sbjct: 10  LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDPTFLEKEELDKL 69

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +   AVHQG+AL+TAPL    ++ V          L++VLD V DPHN+GAI+RSA AF 
Sbjct: 70  LPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAFG 129

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I   R++P  + VLAK+ASGA++ +P +R++NL  AL  +   GF T+GL     +
Sbjct: 130 ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGAR 189

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +     + AL+LG+EG+GLR  T E    +A L   G + +LNVSNAAAVALY    
Sbjct: 190 PLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVAR 249

Query: 279 HF 280
             
Sbjct: 250 RR 251


>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
          Length = 252

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 7/236 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              Q     + G H V  AL   +  + +++ +++     +WD N      +    P  +
Sbjct: 23  EREQSGTFIIEGFHLVEEALKVDN-LVEEIIISEDRSIPSEWDLN---HVELIYAVPNVL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +I   E   QG+A      +   L    N ++L+ LD+V DP N+G ++R+A A   D 
Sbjct: 79  KEISETE-TPQGVAAICRIPVQHDLTLQPNQKILL-LDNVQDPGNVGTMIRTADAAGMDM 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   S+ + +S  G++ H+P  R    T   Q              +     E
Sbjct: 137 VILGEGCADLYSSKVIRSTQGSIFHLPIARGDLKTYIKQCKELQTPVYGTSLQNGVPFQE 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  N   ALILG EGKG+  +  E      ++ + G  ++LNV  AA + +Y  +
Sbjct: 197 VQSSNT-FALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251


>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
 gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
          Length = 257

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H  +     + G+  V  A+ +       +          D    +     +  +    +
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   E     + +             ++ +L++++D V DP N+G I+RSA A    G
Sbjct: 83  KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRSAHAAGAAG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK      +    +S  G++ +IP +   +L              +      K    
Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y       
Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256

Query: 282 K 282
           K
Sbjct: 257 K 257


>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 280

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 11/264 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARL 81
           +R +H   K+ ++  ++    +      L G + V   L          +     A  RL
Sbjct: 1   MRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADERL 59

Query: 82  DWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ 133
                        +  +    +D++     +HQG+AL+  P      D        +   
Sbjct: 60  TECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQPPA 118

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R +
Sbjct: 119 LLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARAT 178

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +  
Sbjct: 179 NLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVS 238

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + M    ++LN S AA V L    
Sbjct: 239 IPMAAQAESLNASVAAGVVLAEIA 262


>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
           13124]
          Length = 257

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H  +     + G+  V  A+ +       +          D    +     +  +    +
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNETLL 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   E     + +             ++ +L++++D V DP N+G I+R+A A    G
Sbjct: 83  KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK      +    +S  G++ +IP +  ++L              +      K    
Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDNSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y       
Sbjct: 197 EENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256

Query: 282 K 282
           K
Sbjct: 257 K 257


>gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
 gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
          Length = 256

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 17/245 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ G H V  AL      +  +L   N                +  PVK V  + +D   
Sbjct: 4   YIEGKHPVIEALRA-QMPLRCVLMADNLKRDGQVADILRKANKYNVPVKRVSRKELDAKS 62

Query: 106 GKEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +   HQG+  E  P    ++               N+ L++VLDH+ D  N+GAI RSA
Sbjct: 63  -ERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIVLDHITDAGNLGAIARSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G+I   + S   +A   KS++GA+ H+P  +++NLT AL ++   GF   G S 
Sbjct: 122 EVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTGALDRLKKAGFWVAGASE 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  + +     KIAL++G E +G+   T E+   +  L   G++ +LNV+ A+   +Y
Sbjct: 182 HAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAVMY 241

Query: 275 ITQNH 279
                
Sbjct: 242 EWLRQ 246


>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
 gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
          Length = 268

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 3/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K  ++  Q SR   +       G+H     L++P   + ++   + A    +    
Sbjct: 11  NPSIKLAKNLAQHSRAARKEGLSLAEGIHLARELLSHP-ELVRKVFLREGAEKNFEISEI 69

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L     +K    Q   +I    +     A     +  P    ++  +  + LD V DP N
Sbjct: 70  LQKYLSLKISVVQLPSQIYASISPVDTSAGIVCEIRIPEEGKIKKDEDWIYLDGVQDPGN 129

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ILRSA+A     I  + + +   S  + ++A GA      I    L +  +K  +  
Sbjct: 130 VGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFFCNIISSVELAEIKEKTGAVC 189

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                         +      +   + G+EG G+  K  E +     + +   +++LNV+
Sbjct: 190 LVADARGGKDLYEEKWG--KGQTLWVFGSEGLGVSEKALELSDLTLLIPLDSRVESLNVA 247

Query: 267 NAAAVALYITQNHF 280
            AA+V L+  +   
Sbjct: 248 TAASVCLFEQRRRR 261


>gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 255

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 5/235 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKT---VPPQTIDKIV 105
           LYG+H VSAAL+        +   + A  R+            PV+    V         
Sbjct: 6   LYGIHAVSAALDAEELLELWVAVERRADERIAPLVQKAAEQRLPVQEWRSVALGRKLNTD 65

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             + V   L           L  +     L+VLD V DPHN+GA LRSA A   D +I  
Sbjct: 66  RHQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAVILP 125

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A + K+++G+   +P   ++NL+  L  +   GF  +G++ +  + L     
Sbjct: 126 RDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYALDL 185

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + +++G E KGLR  T+E    +AH+ M G I++LNVS A  + L+      
Sbjct: 186 DMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQR 240


>gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 246

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L++V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  RKEIPSELSGRY---LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     + +  +   L++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSSLPILASTLSSTSIDYREVVNKESFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTEAADLLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 261

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 24/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E                    + +     + +   Q     L GVH +   
Sbjct: 1   MKHISSANNE------------------HVRHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +  + +   +      +        +       +V    + KI         +     
Sbjct: 43  LQSGGKPLGVYIPEAKMPSEEVRKLMAVLPEDGFFSVSDGILKKISS-LTCADDVLALID 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L A  +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++
Sbjct: 102 IPDAGVLPAGGDC---VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRA 158

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA         ++L   L       F T             E   +    + G EG G
Sbjct: 159 GMGAHFLSEIYPQADLEIWLAHYKGRVFATALREEKQAVLY-NEDLREPTTWVFGNEGAG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + A     + M    ++LNV+ AA + L+      A
Sbjct: 218 VGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 259


>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 380

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M    ++LN S AA V L
Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300


>gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 289

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 112/281 (39%), Gaps = 8/281 (2%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+     +  +  +      A++ R +  +++ Q+        ++   + + GV  ++ A
Sbjct: 1   MSARQSPRRGRPGTASPP--ARIERRNALFQQWQALLTNRTKRTRSGEMLIQGVRPITQA 58

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETA 119
           +++       L   +   +R   D     P PV  + P+ + ++   ++   + LAL   
Sbjct: 59  ISHGVEIRALLSDGREQPSRWAQDLLANAPAPVVVLAPELMAELGEREDGAPELLALAAV 118

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P  S        + L++V D  + P NIG++ RS  A   D ++ T   + +      ++
Sbjct: 119 PSDSLDRLEPTGASLVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRA 178

Query: 180 ASGA-----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           ++G+     +  +P  R        ++     +  +GL       L          L++G
Sbjct: 179 STGSLFAVPVMRLPSHREVLDWLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVG 238

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            E  G+    +E    +A + M G   +LN S A +VALY 
Sbjct: 239 NETVGMSSGWREACDVIAEIPMTGAASSLNASVAGSVALYE 279


>gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           K85]
 gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
 gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
          Length = 322

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 11/262 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M    ++LN S AA V L
Sbjct: 279 VSIPMAAQAESLNASVAAGVVL 300


>gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA2]
 gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA2]
 gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA1]
 gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA2]
 gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA1]
 gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA3]
 gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA2]
 gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA2]
 gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA2]
 gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA3]
 gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA2]
 gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA3]
 gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA1]
 gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA3]
 gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA2]
 gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL020PA1]
 gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
          Length = 318

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 24/290 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALN 62
           + K  ++++    ++ AK        K  ++  +K  +         ++ G + V  AL+
Sbjct: 35  TPKAEDRVYH--KAYKAKQE------KLARAAARKPANRQSTGAGPEWVIGRNPVLEALH 86

Query: 63  NPSRKIFQLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                +      + A       A L     H   +       +D++ G  + HQG+AL  
Sbjct: 87  AG-LPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVALRL 144

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                 T+              L++ LD V DP N+GAI+RSA AF   G++   R S S
Sbjct: 145 PEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSAS 204

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIA 230
            +A   K+++GA   IP    +NL  AL K  + G+  +GL+ ++          +  + 
Sbjct: 205 MTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDGPLV 264

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +++G+EG GL   T+++   +A + +   +++LN S AA++ALY      
Sbjct: 265 IVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMR 314


>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA1]
 gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL074PA1]
 gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA1]
 gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA2]
 gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA1]
 gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA1]
 gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA1]
 gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA2]
 gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL007PA1]
 gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL056PA1]
 gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL086PA1]
 gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA4]
 gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA1]
 gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA3]
 gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL067PA1]
 gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA1]
 gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA1]
 gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA1]
 gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA1]
 gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA1]
 gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL045PA1]
 gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA1]
 gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA2]
 gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL078PA1]
 gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL038PA1]
 gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA2]
 gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA1]
 gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA2]
 gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA2]
 gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL097PA1]
 gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA1]
 gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA2]
 gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA3]
 gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA2]
 gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL092PA1]
 gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA1]
 gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA2]
 gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL099PA1]
          Length = 318

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/290 (23%), Positives = 127/290 (43%), Gaps = 24/290 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALN 62
           + K  ++++    ++ AK        K  ++  +K  +         ++ G + V  AL+
Sbjct: 35  TPKAEDRVYH--KAYKAKQE------KLARAAARKPANRQSTGAGPEWVIGRNPVLEALH 86

Query: 63  NPSRKIFQLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                +      + A       A L     H   +       +D++ G  + HQG+AL  
Sbjct: 87  AG-LPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVALRL 144

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                 T+              L++ LD V DP N+GAI+RSA AF   G++   R S S
Sbjct: 145 PEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSAS 204

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIA 230
            +A   K+++GA   IP    +NL  AL K  + G+  +GL+ ++          +  + 
Sbjct: 205 MTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDGPLV 264

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +++G+EG GL   T+++   +A + +   +++LN S AA++ALY      
Sbjct: 265 IVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMR 314


>gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
 gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
          Length = 259

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +L+G+H V  AL NP R   +L+ TKNAL RL            +   P+     +   +
Sbjct: 23  WLFGLHAVRDALENPRRDKRRLVVTKNALDRLGDAVGQA-GLEPEISDPRKFAAPLDPGS 81

Query: 110 VHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           VHQG ALE  PL   +L  V          +++LD V+DPHN+GAILRSA  F    +I 
Sbjct: 82  VHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAVIG 141

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223
            +R+S  E+  LAK+ASGALE  PY+R++NL  A++++   G+   GL+ +++  +    
Sbjct: 142 VQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRPAL 201

Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY ++
Sbjct: 202 DGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASR 257


>gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 282

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 89/250 (35%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  ALN     +  L    +             
Sbjct: 17  FSTLTEAQLRNRLEPSRGIFIAESPKVIKVALNAGYEPLALLCEHNHITGDAADIIKSCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L      +L    +  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTGSRKLLATLTGYVLTRGVLCAMRRRMLPSVEEVCREARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  +P+  +      L K        
Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLLPWTWLDGSLSGLNKYGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             K+A+++G EG GL  +T   A  +  + M   + +LNV+ A+
Sbjct: 197 ALSDHSISIDDPVLTAEPKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAAS 256

Query: 270 AVALYITQNH 279
           AVA +  +  
Sbjct: 257 AVAFWQLRAQ 266


>gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium
           johnsoniae UW101]
          Length = 244

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+       K+F        L +               VP + ++++    
Sbjct: 7   IFGIRAIIEAIQAGQEVDKVFIQKEISGELMKDLMKVMKRANINFSYVPVEKLNRLT--P 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG     +P+    ++          +  L ++LD ++D  N GAI+R+A     +G
Sbjct: 65  NNHQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVNG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  + + + 
Sbjct: 125 IIVQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY      +
Sbjct: 185 DLSLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQRS 244


>gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 275

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 95/278 (34%), Gaps = 12/278 (4%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
             I  + D H  +L      Y ++     +SR   +           +S AL+     + 
Sbjct: 2   PNIIEITDFHAPELDP----YARLTQNQLRSRLEPEKGIFIAESPKVISRALDAGFVPVS 57

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L+  +                P+ T   + +  + G E     L     P      +  
Sbjct: 58  LLMERRQITGPAAEILTRCGDAPIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELC 117

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           RN++ + VL+ + D  N+GAI RSA A + D ++              + + G +  +P+
Sbjct: 118 RNARRVAVLEGIVDSTNVGAIFRSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPW 177

Query: 190 IRISNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            +I        +                           E   +  K+A++LG EG GL 
Sbjct: 178 AQIGETPADWPEKGLAQLNALGFKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLS 237

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             T  +      + M   + +LNV+ A+AVA +     
Sbjct: 238 HTTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275


>gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 7/258 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           +  AL+     I  L+ T++   +         
Sbjct: 18  YARLTEGQLLNRHEPEKGIFIAESPKVIERALDAGCVPISLLMETRHVGTQARDIIQRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G       L     P L    D    ++ + VL++V +P NIGA
Sbjct: 78  EIPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + RSA A   D ++ T   S        + + G +  IP+  + +     Q   S     
Sbjct: 138 VFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGM 197

Query: 210 IGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++                +  DK+A+ILG EG GL  +T         + M   + +
Sbjct: 198 GFKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDS 257

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A+AV  +     F
Sbjct: 258 LNVAAASAVMFWQIGRAF 275


>gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 248

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 51  LYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V+ +LN     K++     +        +        +   P +T+  +  + A
Sbjct: 13  VYGVHAVTESLNANTGNKLYIQEDLRGKNVDTIKNLARDKKVSISWAPKKTLSDMT-EGA 71

Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG  L  +      L+          + L++VLD + DPHN G+ILR+A A    G++
Sbjct: 72  VHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADATKVCGVV 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   D     +  
Sbjct: 132 IPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDGTPVQKWN 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + K+ LI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y    H
Sbjct: 192 T-SGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRH 246


>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
           lavamentivorans DS-1]
          Length = 288

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 17/276 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------------LFLYGVHTVSAALNNPSRK 67
           A++ R  +  K   S         +                 +LYG H V AAL NP+R 
Sbjct: 11  ARMSRRKQQGKFSNSSATSGSPRGRNGRSPAGGKGGGGANDAYLYGFHAVLAALANPARL 70

Query: 68  IFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             +L+ T+NA   L    A LP   PV  + +  + I  ++   AVHQG+AL  +PL   
Sbjct: 71  AERLVLTRNAETELARQGARLPADLPVRLEIMENEDIAALLPAGAVHQGIALRASPLPDL 130

Query: 125 TL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            + +A   +  ++VLD V DPHN GAILRSA  F    +ITT+R SPS   VLAK+ASGA
Sbjct: 131 DVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGALITTERNSPSLGGVLAKAASGA 190

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           LE +   RI+NL  A++++   GF+ +GL  + +  L     + ++AL+LGAEG GLR  
Sbjct: 191 LELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLPDLKLSPRVALVLGAEGAGLRRL 250

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           T+E    +A L   G +K+LNVSNAAAVALY     
Sbjct: 251 TREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRR 286


>gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160]
          Length = 246

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  RI           S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRIDTADFIRLAQSSRLPILASTLSSTSIDYREVDSKESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
 gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
          Length = 263

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 100/261 (38%), Gaps = 12/261 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + R++  +K+++ F   +R         L GVH + + ++        ++    +     
Sbjct: 7   ISRDNPVFKQLKKFADNARERRAEGKTLLDGVHLIESYMDTFGEPDLIIIPEGKSSVEAT 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        +P     ++    A   G+           L      + +++L+ + 
Sbjct: 67  GLIQNLADISTIMLPTLMFAELT-PVANATGILALVKIPQ---LPVPEQPEFVLMLEDIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIG++LR+A A   D +  +   +   S    +   GA   +P +   +L +ALQ+ 
Sbjct: 123 DPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQGAQFVLPIVERVDLINALQEF 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----G 258
                     ++   + L  +  +   A ++G EG GLR +T    +    + M     G
Sbjct: 183 DG----NSYATAMQGESLYAQDLSAPTAFVIGNEGAGLRKQTMAATSKRITIPMANTALG 238

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN   AAAV L+     
Sbjct: 239 SVESLNAGAAAAVCLFERMRQ 259


>gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0012]
          Length = 258

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEKSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4244]
          Length = 258

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H +  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T       L + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N++  K +     K +   +     + G H V  A       +               D 
Sbjct: 6   NNKTIKDLVKLKNK-KTRDEKGLFLVDGFHMVEEAKKAGLCDLVI-----------STDE 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +L     V  V    ++K+   +       +         L        +++LD V DP 
Sbjct: 54  SLEGQDKVLVVSDSVMEKLSYTKTPQ--PIMAVCHKKDNILKHYDR---VLILDGVQDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILRSA+AF    I+ +       +    +S  GA+ H+  +R        +     
Sbjct: 109 NLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVRDDLHHVIPELQKLG 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                     +   ++     DK+A ++G EG G+R +T   + +  ++ +   +++LNV
Sbjct: 169 VRVIATS-LHNASSIDDIKSTDKMAFVMGNEGNGVRDETIAMSDASLYIPI-DTMESLNV 226

Query: 266 SNAAAVALY 274
             AA + +Y
Sbjct: 227 GVAAGIVMY 235


>gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           SL3/3]
          Length = 297

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 19/278 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +  H     RN       +   + +    Q     +YG + V+  L + S     L+A  
Sbjct: 24  RKEHKKMEERNQP-----RRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEG 78

Query: 76  NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128
            A A   +   L       VK V P  +  + G E+ HQG+A   + +   T++      
Sbjct: 79  MAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAA 137

Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                   L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E 
Sbjct: 138 KAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAER 197

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R++N+ + ++++   G             L +      IAL+LG+EG G+    ++
Sbjct: 198 LPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKK 256

Query: 247 TATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281
               +  L M      + + NVS AA + LY  Q+  A
Sbjct: 257 LCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 269

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 7/260 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81
           ++ R  +  +S  + +      +    +G + V + L    +  +KI+     +      
Sbjct: 5   KDKRKVRSDRSKGRTTSSRRSEDKDLCWGRNAVISMLETVPSACKKIYLATGIQTTFRDD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVL 138
                  +   V       +D+I G E  HQG+           L      +   LL+ +
Sbjct: 65  LLSLAGKNAVEVTEANGSYLDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAM 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DHV DPHN GA++R+A A    G+I   R S   +  + K+++GA   +P   ++NL  +
Sbjct: 124 DHVKDPHNFGAMIRTAEAVGALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRS 183

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +   G+  +GL  +  + +      DK+ L++G+EG+GL   + E    +  + M G
Sbjct: 184 MEILKKEGYWVVGLDHEEPRDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVG 243

Query: 259 IIKALNVSNAAAVALYITQN 278
              +LN S AAA+ ++  + 
Sbjct: 244 KTGSLNASVAAALGMFEWRR 263


>gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 297

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 19/278 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +  H     RN       +   + +    Q     +YG + V+  L + S     L+A  
Sbjct: 24  RKEHKKMEERNQP-----RRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEG 78

Query: 76  NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----- 128
            A A   +   L       VK V P  +  + G E+ HQG+A   + +   T++      
Sbjct: 79  MAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAA 137

Query: 129 --VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                   L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E 
Sbjct: 138 KAKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAER 197

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R++N+ + ++++   G             L +      IAL+LG+EG G+    ++
Sbjct: 198 LPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKK 256

Query: 247 TATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281
               +  L M      + + NVS AA + LY  Q+  A
Sbjct: 257 LCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           maricopensis DSM 21211]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            LYG + V  AL +    ++      ++A  R            V+  P   +D++ G  
Sbjct: 2   LLYGRNPVLEALRDGRVTEVLVARGVEDAFVREL----KATDVRVRFAPRIELDQLAGTT 57

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  E   L   T+D             L+++LD + DP N GAI+RSA      G
Sbjct: 58  A-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPRNFGAIIRSAEVLGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ + L 
Sbjct: 117 VIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTDGVWVYGAAGEAARDLR 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     K+AL++GAEG+GLR   +E    +  + + G +++LN S AA++ LY  
Sbjct: 177 ELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQA 231


>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 91/232 (39%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +LYG HTV AAL NP R   +LLAT+NA   L W         +  V P+ IDK +   A
Sbjct: 13  WLYGRHTVEAALGNPQRHQVKLLATRNA---LGWLKERGRTITIDPVTPKDIDKALPPGA 69

Query: 110 VHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           VHQGLA+   PL SP+L        +  L+VLD + DP NIGA+ R A AFS   +I   
Sbjct: 70  VHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFSAKAVIAQD 129

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +P     LAK+A+GA+E +P+I + N++ AL+ +        GL+ +    L      
Sbjct: 130 RRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGEGALSLRDTAPT 189

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              AL+LGAEGKGLRP  +     +  + +   I++LNV+ AAA++LY    
Sbjct: 190 RTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYHLGR 241


>gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330]
          Length = 246

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 105/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   + +        V P+ +  +   +     +A     
Sbjct: 40  ISSGAELI-RIFALAEYAERLADFSQM------IFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REKIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIRLARSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTAAADILIHISMRGQAESLNVAVAAGILIFHL 245


>gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
 gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
          Length = 253

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 100/249 (40%), Gaps = 6/249 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 8   NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     +  V     D++   E       +                   ++LD++ DP 
Sbjct: 66  KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++       L   ++ 
Sbjct: 122 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 +     + L       ++ LI+G E  G+  + Q       ++ + G  ++LN 
Sbjct: 182 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 241

Query: 266 SNAAAVALY 274
           + AA + +Y
Sbjct: 242 AVAAGIMIY 250


>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 320

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 22/287 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  K+ +        +  + +    +   +  + G + V   L   
Sbjct: 37  TPKAEDRVYH--KAHKRKVEQQ-------RKASGRHDRRNLHGSELVVGRNPVVECLRA- 86

Query: 65  SRKIFQLLATK--NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +  +   RL     +       V  VP   +D++ G   +HQGL L    
Sbjct: 87  KVSATALYVAEGTDNDDRLTEAVRVAGDRAITVLEVPRIELDRMTG-NGMHQGLGLLVPE 145

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +           ++ L++ LD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 146 YQYVDVQDLIDRAHASSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 205

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + +++
Sbjct: 206 AVAWRTSAGTAARLPVAKATNMTRALKQFQKEGYQVVGLDAGGDHTLDTYDGTTPVVVVV 265

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+EGKGL     ET  ++  + M   +++LN S AA V L       
Sbjct: 266 GSEGKGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQR 312


>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 250

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL + +  + ++ AT  A+ R           PV+ V  
Sbjct: 9   RPAARRRAGLFLAEGPNLVEAALRSGA--VERIFATDAAIERFVDLLAEA---PVRRVTE 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A     + + +    R+ + ++V   +++P N G ++R A A  
Sbjct: 64  RAAKALSDTVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MHSWGFQTIGLSSDS 216
            D ++         +    ++++G++ +IP +   ++                  L  D 
Sbjct: 124 ADAVVLAGNSVDPFNGKSLRASAGSIFNIPVVPEGDVGAIAADLAQTGVALLATTLDGDL 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +     A   G E  GL   T   AT   ++ M G  ++LN+++AA++ LY T
Sbjct: 184 SLDEADAVLAGPCAWFFGNEAHGLDGATAALATHRINIPMRGGAESLNLASAASICLYAT 243

Query: 277 QN 278
             
Sbjct: 244 AR 245


>gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 286

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H  K R                      E+  + G H    A
Sbjct: 41  MNIITSKANNVVKKAKKLHQKKYR---------------------SESYLIEGWHLFEEA 79

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + +R I ++ A      RL   +          V P+ +  +   +     +A     
Sbjct: 80  LASQAR-ILRIFALAEYEERLAAFSQT------IFVSPEILSDLADSKTPQGIVAELAFE 132

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +            + L+ V DP N+G I+R+A A    G+  +   +   +    +S 
Sbjct: 133 EQNIPEKLEGAY---LFLEDVQDPGNVGTIIRTADAAGYQGVFISSHSADIYNLKTLRSM 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+S          S         S+     ++  K++   L++G EG+G+
Sbjct: 190 QGSHFHLPIYRVSREDMLALARQSDLQILASTLSEYSVDYQKVEKHEDFLLVMGNEGQGI 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 250 SQEMTEVADVLVHISMKGQAESLNVAVAAGILMFAL 285


>gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
 gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
          Length = 247

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 13/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S  I ++   K A      +          PV  VP + +++   
Sbjct: 6   LIYGIHALTESLASHSD-IDKIYMKKGAATGELLEIKRTARAQGIPVMEVPAERLNRFT- 63

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+    L+              +++LD V D  N GAI R+      
Sbjct: 64  -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY     
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242


>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
 gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
           20547]
          Length = 323

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 121/271 (44%), Gaps = 10/271 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NA 77
            + RR  +     +        + +     + G + V  AL    P+  ++     + + 
Sbjct: 51  KRARRAEKSAGGQRPVRGSKARSGKDSTEMVLGRNAVLEALRTQVPATHLYVASTIESDD 110

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNS 132
             +           P+       +D++   E VHQGL L+  P     LD         +
Sbjct: 111 RVKEALRLASEQGVPLLEAGRPELDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADVT 169

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + LD + DP N+GAI+RSA AF   GII T+R S   +A   ++++GA   +P  R+
Sbjct: 170 PLFVALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARV 229

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           +NL  ALQ++ S G   IGL +D    L       D + +++G+EGKG+   T+E    +
Sbjct: 230 TNLNRALQELRSQGIFVIGLDADGDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQI 289

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M    ++LN   AAAV LY      A+
Sbjct: 290 VSIPMTAGNESLNAGTAAAVTLYEIARERAQ 320


>gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
 gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
          Length = 266

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 11/253 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +       ++L+G+H V  AL NP R++ +L+ TKNA  RL  DA        +  
Sbjct: 12  KERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQSGITPEIC 70

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152
            P+     +   +VHQG ALE  PL    L ++         L+ LD V DPHN+GAILR
Sbjct: 71  EPRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLFLDRVTDPHNVGAILR 130

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA       +I TKR +  E+  LAK+ASGALE  PY+RI NL D +++M + G+  +GL
Sbjct: 131 SAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKALGYILLGL 190

Query: 213 SSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +++  +E  I          IAL+LGAEG GLR KT+ T  ++  +   G   +LNVS
Sbjct: 191 DGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAGAFGSLNVS 250

Query: 267 NAAAVALYITQNH 279
           NAAAV+LY +  +
Sbjct: 251 NAAAVSLYASLQN 263


>gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 278

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 21/286 (7%)

Query: 2   NLISKKK--SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           ++I+ K   +  I S K          +   K  ++   +SR   +     L GVH + A
Sbjct: 3   DIITNKYSNNPVITSDK----------NPTAKLAKALLTQSRQRKKAGQTVLEGVHLIEA 52

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGL 114
           AL         +++                        +  V       I       + +
Sbjct: 53  ALQANHIPEQIIISYSGLSHPDVQQLLASLSGYNLDNKLTVVSDSVYQSITTLGNGVEIM 112

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+   P  +        +   ++L+ V D  N+G +LR+A A     II TK  + + S 
Sbjct: 113 AIVNVPQHNLHTLKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSP 172

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  GA   +         + L  +    + T    S +   + ++  N  +A ++G
Sbjct: 173 KTMRAGMGAQFGLTIYEGIEADEVLSYLRLPVYATS---SHTDNIIYKQNLNRPVAWVMG 229

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG+G+     + AT    L  P   ++LNV+ A A+ +Y T    
Sbjct: 230 HEGQGVCEAIMKEAT-PVALPQPNGQESLNVAIAGALCMYETLRQR 274


>gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 249

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLL---SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P        LD +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  +S  PL
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 276

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 8/270 (2%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
               +L    + + + +    ++ R  ++     + G   V+ AL    R + +L     
Sbjct: 7   PQRRRLDSSKNPEVRALAKL-KERRARAREGRFLVEGTREVTRALEAG-RALERLYVCPE 64

Query: 77  ALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            L                  V  + P     +  +EA    +AL    L +     +   
Sbjct: 65  RLRDEGRALVARCQAEGAASVTELSPAAFRVLSHREAPDGVIALVRTALTTLRDLQLAAD 124

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V+D +  P N+GA+LR+A       +                 +S           
Sbjct: 125 ALVLVVDGLEKPGNLGALLRTADGVGAAAVFA-TGAGTDFENPNVIRSSMGSVFSLPTLR 183

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +   + L  + + GF+ +  +  +           + AL+LG E  GL     E A    
Sbjct: 184 APAAELLAWLRAQGFRLVAATPHADTLFWDAPYTGRTALLLGTEHDGLSALWLEAADVRV 243

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + M G+  +LNV+ A A+ LY       +
Sbjct: 244 TIPMGGLADSLNVATAGALLLYEALRQRRR 273


>gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
 gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
          Length = 255

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 100/249 (40%), Gaps = 6/249 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     +  V     D++   E       +                   ++LD++ DP 
Sbjct: 68  KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++       L   ++ 
Sbjct: 124 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 +     + L       ++ LI+G E  G+  + Q       ++ + G  ++LN 
Sbjct: 184 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 243

Query: 266 SNAAAVALY 274
           + AA + +Y
Sbjct: 244 AVAAGIMIY 252


>gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
 gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
          Length = 261

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL            + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+          LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+     
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            G ++ +     Q      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 247

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTID 102
            +++ +   H V A L +      ++    K    RL+   +  +     V+      +D
Sbjct: 2   SKSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLNTLTSEFNNFGISVQRCTKIQLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156
           K+   +      A    P L    + +           +++LD + DP N+GA LRSA A
Sbjct: 62  KLSNHQTHQGVAAEILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACLRSANA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S   ++++ K+++GAL  +   +++NL+  ++ +       IGL    
Sbjct: 122 AGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIGLDGSV 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q       A+I+GAEG GLR  T+++   +A + M G +++LNVS A  V L+  
Sbjct: 182 NISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEV 241

Query: 277 QNHF 280
               
Sbjct: 242 NRQR 245


>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++YG + V  AL     R++      +  L +           P   VP   +D ++ + 
Sbjct: 2   WIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERL----GAPYTLVPRIELDTLL-RT 56

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+A E       +L+         +   LL+ LD V DP N GA++RSA+A    G
Sbjct: 57  THHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++ +R +   S +  K+++GA   +P +++ NL   L+ +   G    GL    +K   
Sbjct: 117 VVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPW 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      + L++G+EG+G+R   +ET   +  + +    ++LN S A  +ALY  +
Sbjct: 177 ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQAR 232


>gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium]
          Length = 259

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 18/272 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQ 70
           I SL   H A+        K +   ++  +           G+     AL +    +I  
Sbjct: 2   IESLNSPHVAR-------VKALIG-SRGVKERKAAGQFVAEGLQCAREALKSNSGPRIET 53

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L  T N  +++   ++L   F V  V  + + ++         LA+ T P ++    A+ 
Sbjct: 54  LYLTNNGRSKVAEISDLSA-FNVVDVSDEVMKEMSETITPQGILAVCTIPQITFDSIALN 112

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S+  + L  V DP N G ILRSA AF+ D +IT+       S  + +S +G+L HIP  
Sbjct: 113 GSRRFIYLSEVQDPGNAGTILRSADAFAMDAVITSPGSVDMYSPKVVRSTAGSLWHIPVF 172

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249
               L + L    +        S    +       +     + G E +GL   T + A  
Sbjct: 173 ESWRLEELLNLGLNAFSLGAEGSKSLSQYQM----SGDTLAVFGNEARGLS--TAQNADS 226

Query: 250 -SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + MPG  ++LN+S AA++ +Y   N  
Sbjct: 227 IDVVSIPMPGNAESLNLSAAASIVMYHLSNMR 258


>gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
 gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
          Length = 328

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 122/294 (41%), Gaps = 20/294 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  K     R         Q      +  +  + G + V  AL   
Sbjct: 35  TPKAEDRVYH--KAHKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTE 92

Query: 65  SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  + ++   +   R           P+  +P   +D++    +VHQG+A++  P 
Sbjct: 93  IPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPY 151

Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             P      LD +            L + LD + DP N+GAI+RS  AFS DG+I  +R 
Sbjct: 152 KYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S + +A   K+++GA   IP    +NLT  +Q+    G   IGL       L      N+
Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANE 271

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + +++G+EGKGL     E    +  + +   +++LN + A  + LY      A
Sbjct: 272 PLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325


>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
           ATCC 15444]
          Length = 269

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 11/261 (4%)

Query: 24  RRNHRDY--KKMQSFNQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           R  + D   +  +  NQ+     +    ++L+G H V AAL NP+RK   LLAT+NA  +
Sbjct: 8   RPPNTDVATRPGRPENQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENAAQK 67

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVL 138
           L            +    + ID  +   AVHQG+AL   PL    L+ V    +  + VL
Sbjct: 68  LP-----AGVISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRIAVL 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V+DPHN+GAI RSA AF  +G++   R +P  + ++AKSA+GA+E +  IR  N+  A
Sbjct: 123 DQVSDPHNLGAIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNIARA 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257
           L+++    F T+GL+ +S + L++ +K   K+A++LGAEG GLRP   +  + +A + + 
Sbjct: 183 LEQLAEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARIPIA 242

Query: 258 GIIKALNVSNAAAVALYITQN 278
             +++LNVSNAAA+A Y    
Sbjct: 243 AQMESLNVSNAAAIAFYEASR 263


>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 309

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 11/266 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +          +   +++    +       G   V  A  +    + +L AT  A  R  
Sbjct: 37  ISPRSPRVSAARRLAKRN-FRGKERLFLAEGPQAVREAAGHG---LVELFATVEAAERYA 92

Query: 83  WDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       V       I  I         + +                +L+ VL +
Sbjct: 93  DIIGEARAVQARVHLAAEDVIADISTTVTPQGLVGICRFLDTPFEEILAARPKLVAVLAN 152

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      + +A++
Sbjct: 153 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEEAVE 212

Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +         L+ E          A + G E  GL  +T+  A ++  + +
Sbjct: 213 GLRRAGVRILAADGAGTDDLDAELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPI 272

Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281
            G  ++LN++ AAAV LY +     A
Sbjct: 273 HGKAESLNLATAAAVCLYASARAQRA 298


>gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 234

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + I+   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G   ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAVGEANINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228


>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 456

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 17/279 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQ 70
            S   +  R  R  +  + F +K R  S   +        L+G H   AAL    R I +
Sbjct: 121 RSRSPRSDRQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALEAG-RPIHR 179

Query: 71  LLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +  T       R              V+ V    + ++ G            A       
Sbjct: 180 IWCTSEMRSAPRFMQLLRDAKSSGVLVEEVTWARLAQMTGGAVHQGIALQTAAADTLDLA 239

Query: 127 DAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           D +          LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A
Sbjct: 240 DLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVA 299

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GALEH+P  R+ NL  +L+ +   G++ +GL+ +  + LE+      + ++ G+EG+GL
Sbjct: 300 AGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQGL 359

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              T+     +  + + G+  +LN S A A+ LY     
Sbjct: 360 SMLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARR 398


>gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1]
 gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
 gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
          Length = 255

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 101/249 (40%), Gaps = 6/249 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     +  V     D++   E       +                   ++LD++ DP 
Sbjct: 68  KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPH---SFSFKFGKWVILDNLTDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A S DG+I + +     ++ + +S  G+  H+  ++       L   ++ 
Sbjct: 124 NVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDIEQVLLDFKNNG 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 +     + L       ++ LI+G E  G+  + Q       ++ + G  ++LN 
Sbjct: 184 LPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNA 243

Query: 266 SNAAAVALY 274
           + AA + +Y
Sbjct: 244 AVAAGIMIY 252


>gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 441

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 2/235 (0%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             ++L+G+H V AAL NP+R++ +LL T+ A A L      P     +      +D+++G
Sbjct: 206 GAVWLHGLHAVEAALRNPARRLRRLLLTEEAEATLAERLPPPWALVAERTERAHMDQLLG 265

Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            E+VHQG+AL    L SP L  +  +    ++VLD V+DP N+GAILRSA AF    +I 
Sbjct: 266 TESVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCVIV 325

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R +P ES  +AK+ASGAL+ +P +R+ N+   L  + +     +GL ++        +
Sbjct: 326 QDRNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGPAL 385

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++AL++GAEG GLR  T+E+   +  L M   +++LNVS A A+ALY    +
Sbjct: 386 GKRRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440


>gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 274

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 26/282 (9%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+   +EK+ ++ +                       +H       F+ G   +  A  +
Sbjct: 9   ITSFSNEKLKTISNLKEK-------------------KHRETSGLFFIEGYREILRAQKS 49

Query: 64  PSRKI-FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              K    L + +  L   ++            VP +  +K+  ++     +A       
Sbjct: 50  GKIKFQNILFSPECFLGENEFSLIRSIGTKNIKVPKKIFEKVSYRDRPDGLIATAFFFET 109

Query: 123 SPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                  +++       ++V++ V  P N+G ILR+A       ++         +  + 
Sbjct: 110 GLDTFQNKSNIFKNLKPILVIEGVEKPGNLGTILRTAEGAGFHTVLVADPKLDLFNPNVI 169

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GAL  +            + +    ++T+ ++ ++ K         KIAL+ G+E 
Sbjct: 170 RASTGALFTLEVYLGEIK-LIYEILKKNQYRTLAVTPEATKHYYNADLKGKIALVFGSEQ 228

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL    +  +     L M G   +LN++ +A + +Y     
Sbjct: 229 YGLSTYARNNSDEYVSLPMFGESDSLNLAMSAGIVMYEVIRQ 270


>gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
 gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
          Length = 243

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 8/234 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI---VG 106
           G+HTV   L +    + +L    N  ++              PV+TV    I+ +   V 
Sbjct: 9   GIHTVQQLLADGH--VLRLYVADNKKSKNLTALVGEAQARGVPVETVALYEIEMMLPGVR 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            + V                 A     LL+VLD + DPHN+GA LRSA A     ++   
Sbjct: 67  HQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIPN 126

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   + V+ K A GA E +P  R+SNL   +++M   G   +G +  + + L      
Sbjct: 127 SRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQGIWVVGGAGGAAQSLYATDLT 186

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +A+I+G EG+G+R   +E    +  + M   +++LNVS A  V L+  +   
Sbjct: 187 VPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQR 240


>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
 gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
          Length = 320

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 46  PENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTID 102
           P +  + G + V  AL    P+ ++  ++    +   R           PV       +D
Sbjct: 70  PGSDQVAGRNAVLEALREDVPATQLTVMVRLDADERVREIMRLATARGLPVAEASRTDLD 129

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++    +VHQG+AL   P     +       +      LL+ LD + DP N+GAILRSA 
Sbjct: 130 RMTDH-SVHQGVALTIPPYEYADVQDLLRIAEERFEPPLLVALDGITDPRNLGAILRSAD 188

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   G+I  +R S S +A + K A+GA   +   +++NL   L  +       +GL ++
Sbjct: 189 AFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQVTNLNRTLTALKEQDVFALGLDAE 248

Query: 216 SKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                           L++GAEGKGL    ++    +  + M G  ++LN S AAA+ALY
Sbjct: 249 GDVTTRGLELGTQPAVLVVGAEGKGLSRLARDICDQVVSIPMGGRAESLNASVAAAIALY 308

Query: 275 IT 276
             
Sbjct: 309 EI 310


>gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 255

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF---PVKTVPPQTIDKIVG 106
           L G H V A L      +  +        R   D            +     + + K+ G
Sbjct: 5   LVGFHVVQARLRVDPNSLKSVYFDSGRRDRRMGDFLKQAEEILGERLHAADAERLHKLTG 64

Query: 107 KEAVH-------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +          +   + T   +   +++     L ++LD V DPHN GA LR A     
Sbjct: 65  HDRHQGVVALAEKMAIVRTITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGAGV 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D  +  K  S S +A ++K + GA E +P I ++NL  ++++M   G   IG   ++ K 
Sbjct: 125 DAAVIPKDRSASINATVSKVSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGTDDEATKS 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        IA+++GAEG+G+R  T+ET   +  + M G++ +LNVS A+ V LY     
Sbjct: 185 IYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVLRQ 244

Query: 280 F 280
            
Sbjct: 245 R 245


>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 235

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           ++YG   V  A+ N   ++ ++   KNA   +     +     V TV    + ++++ G 
Sbjct: 3   YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAG- 59

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQ +    +      L+        +    + +LD + DPHN GAI RS   F  D 
Sbjct: 60  TKNHQAVVALVSDFEYIELEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDA 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R + + +  + KS++GA+ +   +   +               I  +    + + 
Sbjct: 120 IIFPNRRAATVNDTVVKSSAGAI-YDIDVCKVSNISQSIDKLKEAGFWIYATDLEGEDIR 178

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   + K A+++G EGKG+     + +     +       +LN S AAA+ +Y  + 
Sbjct: 179 ECDFSGKAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235


>gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6]
 gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6]
          Length = 277

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             +H   K ++    ++    +   ++L G H   A L    R    ++     L     
Sbjct: 26  SHSHALVKDLRRLAHEAGAYRKLGRIWLEGDHLARALLARGGRPQICVVGASAWLQPNWR 85

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L  P  V  +    + +I   E+      L  AP         ++    +VLD + D
Sbjct: 86  ELALAAP-EVVVIADNLLPEISSLESPAPLGFLIAAPAARVP---TQSGVNTLVLDRLQD 141

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A     ++  K  +   S  + ++  GA               + ++ 
Sbjct: 142 PGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHF----ALHLVEGVEVNELD 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  SS +++ L +       A +LG EG+G+             +  PG  ++L
Sbjct: 198 TLDLPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEAVMRRCALTVRIPQPGGEESL 257

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ LY +   
Sbjct: 258 NVAAAAAICLYESARQ 273


>gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 270

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 90/248 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R  S            +  AL+     +  L   K+ +           
Sbjct: 17  FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G       L     P L    +  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  + +  I      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTVAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
 gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
          Length = 254

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVK 94
           +K +         +YGVH     L N  + I +L  +K+               +   V+
Sbjct: 2   RKLKVGRPVSEEIVYGVHASMETLENN-QTINKLYLSKSLAKNRAQQFRQTAEQNKIVVQ 60

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149
            V  Q +D++      HQG+AL  A      LD +      +   L++LD + DPHN+G+
Sbjct: 61  EVDNQRLDELTNH-GNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A   DGII  KR +   + V+AK+++GA+EH+P  R+ N+ + + K+    F  
Sbjct: 120 ILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWI 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G         +    +  +A+++G EGKG+  +T++    M  + M G +++LN S AA
Sbjct: 180 FGTDMKGADYTDWN-ADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAA 238

Query: 270 AVALYITQNHF 280
           A+ +Y   N  
Sbjct: 239 ALLIYQGFNSR 249


>gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
          Length = 261

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL            + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+          LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+     
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            G +S +     +      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
 gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
          Length = 274

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 138/248 (55%), Gaps = 8/248 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G H V  AL NP R   +L+ T NA  +L            +  
Sbjct: 27  KEQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLGDAVAEA-GMEPEIS 85

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
            P+     +  ++VHQG ALE  PL    L+ V      +  L++LD V DPHN+GAILR
Sbjct: 86  DPRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILR 145

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D +  +   G+  +GL
Sbjct: 146 SAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGL 205

Query: 213 SSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +++  +E      ++  IAL+LGAEG GLRPKT+ET  ++  +       +LNVSNAA
Sbjct: 206 DGEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAA 265

Query: 270 AVALYITQ 277
           AVALY  +
Sbjct: 266 AVALYAVR 273


>gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 275

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 12/278 (4%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
             I  + D H  +L      Y ++     ++R   +           +  AL+   + + 
Sbjct: 2   PNIIEITDFHAPELDP----YARLTQNQLRNRLEPEKGIFIAESPKVIDRALDAGYKPVS 57

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L+  K          +     PV T   + + ++ G E     L     P   P  +  
Sbjct: 58  LLMERKQITGPAAGILSRCGDAPVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELC 117

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N++ + VL+ + D  N+GAI RSA A + D ++              + + G +  +P+
Sbjct: 118 KNARRVAVLEGIVDSTNVGAIFRSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPW 177

Query: 190 IRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            ++        +                           EQ  K  K+A++LG EG GL 
Sbjct: 178 GQLGETPADWPEKGMDILHSLGFKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLA 237

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             T  +      + M   + +LNV+ A+AVA +     
Sbjct: 238 AGTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275


>gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a]
          Length = 254

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 12/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104
                +YG + V+ AL    + I  +   K+A                VK      +  +
Sbjct: 16  SNEEIIYGKNAVTEALKA-EKPIDTVFVLKSAQGMNQIIALAKKQGIVVKDAGEDKLKAL 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G +  H G+A   + +   T++ +            +++ D + DPHN+GAI+R+A A 
Sbjct: 75  CGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAA 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  + K+++GA      I   +      K        +  +    
Sbjct: 133 GADGVIIPKRRSATVNPTVFKTSAGAAA-WIKIARVSNLVDTIKTLKKHGVWVYGAEADG 191

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y   
Sbjct: 192 TPIDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEAV 251

Query: 278 NHF 280
            + 
Sbjct: 252 KYR 254


>gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 253

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 15/254 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96
           S  + +     + G H V AAL++ S+KI+Q    +   ++              P+   
Sbjct: 2   SPKSKKGARDLVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYR 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149
             + +D++  + A HQG  LE A     ++D +             ++LD + DPHN+G+
Sbjct: 61  SKRDLDQLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    GII  K  +   +  +AK ++GA+E++P  R++N+T  ++ +   G   
Sbjct: 120 ILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVW- 178

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +    +       +  IA+++G E KG+ P+ ++    +  + M G +++LN S AA
Sbjct: 179 VFGTDMEGQDYWDMDASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAA 238

Query: 270 AVALYIT--QNHFA 281
           A+ +Y    +    
Sbjct: 239 ALVMYEVYGKRRLT 252


>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 280

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 9/266 (3%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +          +   +++    +       G   V  A  +    + +L AT  A  R  
Sbjct: 7   ISPRSARVTAARRLARRN-FRGKDRLFLAEGPQAVREAAGHGDTLV-ELFATAEAAERYA 64

Query: 83  WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              +  H     V       +  I         + +                +L+ VL H
Sbjct: 65  DIVSEAHAAGARVHLADETVVADISTTVTPQGLVGVCRFLDTPFAEILAARPRLVAVLAH 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      + +A+ 
Sbjct: 125 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEEAVA 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +      +  L+ E          A + G E  GL  +T+E A ++  + +
Sbjct: 185 GLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEETRELADAVVRVPI 244

Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281
            G  ++LN++ AAAV LY +     A
Sbjct: 245 HGKAESLNLATAAAVCLYASARAQRA 270


>gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 326

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 23/294 (7%)

Query: 6   KKKS----EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVH 55
             K+          K++  + L R    +K    F+ K   + +     +N   +++G H
Sbjct: 34  SAKNKNYVNLNKKDKNNTSSSLTRRKPIFKSNTEFSNKKSKSQEEFTSKKNFDDWIWGKH 93

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVH 111
           +V  AL +  R I ++  T    +   +   L         ++ V    + ++    A H
Sbjct: 94  SVYEALIS-QRAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASH 151

Query: 112 QGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           QG+AL+ A   + +L+           + +++ LD + DPHN+GAI+RSA AF C GII 
Sbjct: 152 QGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIII 211

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R S   +  +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L    
Sbjct: 212 PQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLSNFS 271

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   + +I+G+E KG+   TQ+    +  + + G   +LN S AAA++L+    
Sbjct: 272 EKVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
 gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
          Length = 291

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 97/263 (36%), Positives = 146/263 (55%), Gaps = 13/263 (4%)

Query: 28  RDYKKMQSF--NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           RD KK       ++++  +  E ++L+G+H V  AL NP R+  + + TKNA  RL    
Sbjct: 27  RDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFVVTKNAFDRLGDAV 86

Query: 86  ---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMV 137
                      +   P+     +  ++VHQG ALE  PL    ++            +++
Sbjct: 87  SIGLKDGGPEPEMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVL 146

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GAILRSA  F    +I   R++  E+  LAK+ASGA+E  PY+R+ NL D
Sbjct: 147 LDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLAD 206

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           A+ ++   G+  +GL  ++++ +EQ      +  IAL+LGAEG GLR KT+ET  ++  +
Sbjct: 207 AIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEGPGLRDKTKETCDALVKI 266

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
              G   +LNVSNAAAVALY T+
Sbjct: 267 DFAGEFGSLNVSNAAAVALYATR 289


>gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 268

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 5/254 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY +++  N +    ++       G   V  AL    +    LL  +      D     
Sbjct: 15  ADYVRLRDTNLRRSLEAKHGLFLAEGEKVVRRALRAGYQPRSLLLTRRRRRVLDDVLDTF 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV  V     +++VG       LA      L    + V +++ ++VL+ + D  N+
Sbjct: 75  QA--PVYVVDDAVAEQLVGFHIHRGILASFHRKPLPTVPEVVASARRIVVLEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSW 205
           GAI RSA     D  +   R +        K + GA+  +PY R+++        +   +
Sbjct: 133 GAIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGF 192

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264
               +  ++D+    E   ++ K AL+ G+EG GL  +  + A   A + M    + +LN
Sbjct: 193 TLVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLN 252

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 253 VTAAAAIACYELMR 266


>gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R]
          Length = 270

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 90/248 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R  S            +  AL+     +  L   K+ +           
Sbjct: 17  FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G       L     P L    +  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  + +  I      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46]
 gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46]
          Length = 270

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 90/248 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R  S            +  AL+     +  L   K+ +           
Sbjct: 17  FSTLTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G       L     P L    +  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  + +  I      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSWTWIDGSLSRLGDLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 266

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 5/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + K++    ++ R  +Q     + G   +  A       +  L   +  L   D   
Sbjct: 12  QNPEVKRLTRLRER-RARTQERAFLIEGARELERA-AQGGVPLRTLYMCEE-LFSPDAHQ 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            LP       V              +    L  A L +     + +  LL+VL  V  P 
Sbjct: 69  ALPALHAPDRVHLSRAAFEKASVRENPDGLLAVADLPARPAPDLPHDALLLVLVGVEKPG 128

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LRSA     D ++                AS        +      DAL  + + 
Sbjct: 129 NVGALLRSADGVGADAVLVVGGVD--LENPNVIRASQGSVFTQTLFTLPEADALPWLRAQ 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF+   ++ D  +         ++A+ LGAE  GL    +E       + M G   +LNV
Sbjct: 187 GFRVAAITPDGAQNYWDADLTGRVAVCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNV 246

Query: 266 SNAAAVALYITQNHF 280
           S A A+ LY      
Sbjct: 247 STAGALVLYEALRQR 261


>gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
 gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
          Length = 254

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 12/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKI 104
                +YG + V+ AL    + I  +   K A                VK      +  +
Sbjct: 16  SNEEIIYGKNAVTEALKA-EKPIDTVFVLKGAQGMNQIIALAKKQGIVVKDAGEDKLKAL 74

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G +  H G+A   + +   T++ +            +++ D + DPHN+GAI+R+A A 
Sbjct: 75  CGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAA 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  + K+++GA      I   +      K        +  +    
Sbjct: 133 GADGVIIPKRRSATVNPTVFKTSAGAAA-WIKIARVSNLVDTIKTLKKHGVWVYGAEADG 191

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y   
Sbjct: 192 TPIDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEAV 251

Query: 278 NHF 280
            + 
Sbjct: 252 KYR 254


>gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 242

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            ++ +++G H   AALNNP R I  +  T++    L       +    K V  + + +++
Sbjct: 4   KKSYYIFGTHASLAALNNPFRVIRYIYCTESCFLSLSKLIQKHN---YKIVTTKFLHQLL 60

Query: 106 GKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           G + VHQG+A+ T PL       +D    +  + +LD + D +N+GAI+RSA AF    I
Sbjct: 61  GSQIVHQGIAVNTIPLTINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDISTI 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  S  E+  +AK A GALE I  +++ NL + +  +    F  IGL  +    L +
Sbjct: 121 ILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQLTE 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  + K A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y 
Sbjct: 181 QTFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYE 233


>gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 261

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL            + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLGEAIA-ESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+          LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+     
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            G ++ +     +      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 269

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96
           ++    +     + G ++V  AL+   R +  L  T++A  R     +  H        V
Sbjct: 19  RTAERRKVGRFLVEGENSVGEALDT--RPVHDLFYTEDAEQRYARLIDRAHTAGVRTSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + +  +         +A+     +         ++LL V   V +P N G ++R A A
Sbjct: 77  TDRAVRALSDTVTPPGLVAVCDLLDVPLAEAIGPGTRLLAVPVAVAEPGNAGTVIRVADA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D  I         +    ++++G+L H+P +R  +    L  + + G Q +  ++D 
Sbjct: 137 VGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDSISAAGIQLLATAADG 196

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+          A + G E  GL   T   A     + + G  ++LN++ AA++ LY
Sbjct: 197 EVDLDDADELLARPTAWLFGNEAHGLDAATSARADHRVRIPIHGRAESLNLATAASICLY 256

Query: 275 ITQN 278
            +  
Sbjct: 257 SSAR 260


>gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 251

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 12/239 (5%)

Query: 50  FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIV 105
           F++G H     L N  + KI ++                        V+ VP   +DK+V
Sbjct: 8   FVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67

Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             +A HQGL L  +      LD        + +  L++LD + DPHN+G+ILRSA A   
Sbjct: 68  -PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + +  
Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY   N
Sbjct: 187 RYWDAK-GKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLN 244


>gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 272

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 93/255 (36%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                      +S    + +     G ++V AA+   +     L  T+ A  R +     
Sbjct: 14  PRVVNAAKLL-RSAGRKKVDRFLAEGENSVEAAVATGAATD--LFVTEKAAERFEAIVTA 70

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  +  +    +          A+    L S       N  L+ V     +P 
Sbjct: 71  AGHMGVFVHPITDRAAKSLSDTMTTTGIFAVCLPVLWSAREALKGNPSLVCVAVETGEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R A A   D +I        +S    ++++G+L HIP +R  ++    Q + + 
Sbjct: 131 NAGTLVRVADAMGADCVIFAGTTVDPQSPKAVRASAGSLFHIPVVREPDMQKVWQILRAR 190

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             Q +  ++  +  L+          A ++G E  GL  +    A     + + G  ++L
Sbjct: 191 NVQMLATAAQGEINLDTAGELLEKPTAWLMGNEAHGLNDEALSAADHSVRIPIRGRAESL 250

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ +Y +  
Sbjct: 251 NLATAASICMYESSK 265


>gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 249

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
             N F++G H     L    S KI ++   +      AR  +         ++ VP   +
Sbjct: 4   TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           DK+ G E  HQGL L  A       D          + LL++LD++ DPHN+G+ILRSA 
Sbjct: 64  DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G + +
Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY 
Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241

Query: 276 TQNHF 280
             N  
Sbjct: 242 AFNSR 246


>gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 255

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
             N F++G H     L    S KI ++   +      AR  +         ++ VP   +
Sbjct: 10  TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           DK+ G E  HQGL L  A       D          + LL++LD++ DPHN+G+ILRSA 
Sbjct: 70  DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRSAD 128

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G + +
Sbjct: 129 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 188

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY 
Sbjct: 189 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 247

Query: 276 TQNHF 280
             N  
Sbjct: 248 AFNSR 252


>gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho
           melanesiensis BI429]
          Length = 238

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 5/232 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG + +   L N         +   +       +       P      + ++K+   E 
Sbjct: 3   VYGRNVLKEILENNVNVKMIYFSNVSSKSIEKLIELVKEKRLPFTIANNRILEKLS-NEK 61

Query: 110 VHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG+ ++           +       L++LD + DPHN GAI+R++VA   D ++  K 
Sbjct: 62  KHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNFGAIIRTSVAAGADALVIPKN 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K + G L     I ++N+   ++K+ + G   +  ++   K   +     
Sbjct: 122 NSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGIW-VYGAAMDGKEYFKVDLKK 180

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +A++LG EG G+R   +     +  + M   +++LNVS +A + LY     
Sbjct: 181 PVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232


>gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34]
 gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 262

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 91/257 (35%), Gaps = 5/257 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K++++    +    +     L G+H   A +    +    +++ ++       
Sbjct: 6   SRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVR 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +   +        L L            +    +++  D + D
Sbjct: 66  ALLEKIDSDKLVVLADALFAQISSVVNGVDLMLVIDTPAGHLPATIDTDCIIL--DGLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA A        TK  + + S    ++  GA  H+  +    L     ++ 
Sbjct: 124 AGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCTLEMLESRLA 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS +   +        +  ++G EG G+ P+     +    +  PG +++L
Sbjct: 184 VPL---LATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGGLESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A AV L+      
Sbjct: 241 NVAAATAVCLFEAVRQR 257


>gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 247

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP-QTIDKIVG 106
            +YG+H V + +     K   +    NA  +++            V  +   + +   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ +                  L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RTQ 246


>gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 281

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 103/242 (42%), Positives = 146/242 (60%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + R         LYG H V  AL N  R + +LLAT+NA ARL+ +         + V P
Sbjct: 39  RPREEGGDGPTVLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRP 98

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             I +++G +AVHQGL LE  PL +P LD +    LL+ LD + DPHN+GAI+R+A AF 
Sbjct: 99  SDIGRLLGPDAVHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFG 158

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GI+TT R++P  + VLAKSASG LEH+P++ + NL +AL ++   GF  +GL SD+ +
Sbjct: 159 VAGIVTTARHAPGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPE 218

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+       + ++LGAEGKGLR +T+     +A +   G I++LNVSNAAA+ LY    
Sbjct: 219 SLDALTVARPLVIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLYALGR 278

Query: 279 HF 280
             
Sbjct: 279 KR 280


>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
 gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
          Length = 249

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 15/249 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +PE    YGVH+V + L     ++  L       +   +   +   P    V+      +
Sbjct: 3   KPEYF--YGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKL 60

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +K+ G+   HQG+        +       +L +     LL+ LDH+ DPHN+GA +R+A 
Sbjct: 61  EKLAGQP-FHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTAA 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   + +I  +  S + +    K A+G  + + +I+++NL   L ++       +  +  
Sbjct: 120 AMGVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTML 179

Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +K L  +  +     + +++GAE  GLRP TQ       ++ M G +++LNVS A  +A
Sbjct: 180 DEKALPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMA 239

Query: 273 LYITQNHFA 281
           LY       
Sbjct: 240 LYEACRQRN 248


>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 245

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A  +    I  +   +    RL           V  V P+ + +
Sbjct: 22  HRKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +       QG+  E          +     L++  + + DP N+G I+R+A A + DG+ 
Sbjct: 75  LTSSP-NPQGIIAEVKFCQQALPTSYAGKYLIL--EDIQDPGNLGTIIRTADAANFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R      +               S      +  
Sbjct: 132 LSEKSADIYNQKTLRSMQGSHFHLPIWRTDIYQVSQAMQQQKIPVLATTLSQDSIDYKDL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL+LG EG+G+ P+    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 SARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242


>gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
 gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
          Length = 335

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 19/285 (6%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSAALN 62
                + KDS ++ L+R    +K     + K+   +Q     +N   +++G H+V  AL 
Sbjct: 50  ENLNKNEKDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEAL- 108

Query: 63  NPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +  R I ++  T    +   +   L         ++ V    + ++    A HQG+AL+ 
Sbjct: 109 SSERAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-YGASHQGIALQL 167

Query: 119 APLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A   + +L+           + +++ LD + DPHN+GAI+RSA AF C GII  +R S  
Sbjct: 168 ACSRTISLEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAG 227

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK A+GALEH+   R+ NL  AL+++   GF  +GLS D +  +   ++   + +
Sbjct: 228 LTGTVAKVAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVV 287

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           I+G+E KG+   TQ+    +  + + G   +LN S AAA++L+  
Sbjct: 288 IVGSEEKGISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLFHL 332


>gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 268

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 13/272 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  D   A       DY ++     + +  ++           +  AL    R    
Sbjct: 4   RITSPDDDRVA-------DYFRLTDVALRKKLETERGLYIAESEKVIRRALARGDRP-RS 55

Query: 71  LLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L  +  L  L            PV       I+ + G       LA    P L+   + 
Sbjct: 56  FLMGQRWLDDLADIVADAEAADVPVYVGEADVIESMTGFHLHRGALASMNRPALALPEEL 115

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R+++ ++VL+ + D  N+GAI RSA A   D ++ T R +        + + G +  +P
Sbjct: 116 LRDARRVVVLEDIVDHTNVGAIFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVP 175

Query: 189 YIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           + RI     ++ ++   G+                    + +++AL++G EG GL  +T 
Sbjct: 176 WTRIDPWPGSVTRLQEAGWTVAAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTV 235

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   + M G + +LNV+ A+AVA+Y  +
Sbjct: 236 AACDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267


>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 283

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 92/271 (33%), Gaps = 13/271 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNA 77
           +          +   +++    +       G   V  A+ +         + +L  T  A
Sbjct: 3   ISPRSPRVSAARRLARRN-FRGKERLFLAEGPQAVREAVGHRGADGDGATLVELFTTAEA 61

Query: 78  LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
             R              V     + I  I         + +                +L+
Sbjct: 62  AERYADIVTAARSAGARVHLAEEEVIADISTTVTPQGLVGVCRFLDTPFEEILAARPRLV 121

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VL HV DP N G +LR A A   D ++ T       +    +++ G+L H+P      +
Sbjct: 122 AVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVTV 181

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSM 251
             A+  +   G + +         L+ E          A + G E  GL  +T+  A ++
Sbjct: 182 ERAVGGLRDAGVRVLAADGAGADDLDDELDRGTMGTPTAWVFGNEAWGLPEETRALADAV 241

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
             + + G  ++LN++ AAAV LY +     A
Sbjct: 242 VRVPIHGRAESLNLATAAAVCLYASARAQRA 272


>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
 gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
          Length = 547

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 13/253 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPV 93
              R  ++P +  ++G H   AAL    R I ++  T       R          +   V
Sbjct: 169 SSERFGAEPADDLVWGRHPAQAALE-GDRPIHRIWCTPELRFAPRFLQLLRDAKANGVLV 227

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146
           + V    + +I G  AVHQG+ L+ A   +  L         +  + LLM +D + DPHN
Sbjct: 228 EEVTWARLGQISG-GAVHQGIVLQAAAAETLDLASLIDGCSTIGEAPLLMAVDGLTDPHN 286

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA A    G++  +R +   +  +AK A+GALEH+P  R+ NL  +++++   G
Sbjct: 287 LGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSIEQLKDAG 346

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           ++ +GL+ +    L +   +  + ++ G+E +GL   T++    +  + + G   +LN S
Sbjct: 347 YRVVGLAEEGNVSLMEADLDGPLVVVTGSEAQGLSMLTRKHCDQLIRIPLRGATPSLNAS 406

Query: 267 NAAAVALYITQNH 279
            A A+ LY     
Sbjct: 407 VATALLLYEIARR 419


>gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 11/237 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG + V  AL     ++ ++   +     L           +  VP   +D++V +   
Sbjct: 7   IYGRNPVLEALREG--RVRRVWVARGVERWLVRQLE-ASGVELVFVPRIELDQMV-RTTR 62

Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  E   +     +             LL+++D V DP N GAILR+A A    G++
Sbjct: 63  HQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGAHGVV 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           + +R S   S V  K+++GA   IP +R+ NL   ++ +   G    G +  ++K L + 
Sbjct: 123 SEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKTLAEL 182

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +AL++G+EG+G+R   +E    +  + + G  ++LNV+ A  +AL+    H 
Sbjct: 183 DYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQHR 239


>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 239

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++YG + +  AL N  +K+ ++ A       +     +       +     + +  +VG+
Sbjct: 3   YIYGRNAIIEALKN--KKVDKIYAAPGLKGSIGKIYAMAKEQKIVIVEADKKKLKDMVGE 60

Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 +AL ++   S   D +        +  L++LD + DP+N GAI RSA AF   G
Sbjct: 61  VNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIMLDEIEDPYNFGAIARSAEAFGFHG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S   +  + KS++GA+E I    ++NL+  + ++       +  ++    P+ 
Sbjct: 121 IIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIW-VYGATMEGDPIC 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +     I +++G EGKGL    ++    +  + M G I +LN S A  + LY     
Sbjct: 180 DQDLVGNICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQ 237


>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13]
          Length = 249

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 9/245 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + +   + G + V  AL          +                    VK V  Q + +
Sbjct: 4   QEKDEALIIGRNPVLEALKAEEPLDTIYMNGTGGSLGRICTMAKSRGIVVKNVTEQKLSQ 63

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+    A     TL+           +  L+V D + DPHN+GAI+R+A  
Sbjct: 64  MA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIRTAET 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S S +A + K+++GA   +P  R++NL  A           I  +  S
Sbjct: 123 AGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANL-AAALDTLKEAGVWIYGTDAS 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               ++      +AL++G+EG G+    +E    +  L M G I +LN S AA + +Y T
Sbjct: 182 GDAYDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIFMYET 241

Query: 277 QNHFA 281
               A
Sbjct: 242 LRQRA 246


>gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
 gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
          Length = 244

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 12/239 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGK 107
           LYG+H +   L      I+ L   K  + +      D         +  P    +K+   
Sbjct: 6   LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLEPKSFFNKL--- 62

Query: 108 EAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+                 L    ++ L + LD V DPHN+GAILR+A A     
Sbjct: 63  EGVHQGVVATVAKEADLNETDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +A + K A GA E +  + +SNL   ++++   G    GL+ ++   L 
Sbjct: 123 VVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNTTLY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      + L++GAEG GLR  T+ET   +A + M G I++LNVS A  V LY      
Sbjct: 183 QLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQR 241


>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 294

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 27/290 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I     ++I S           ++   +   +     R  ++       G+     A
Sbjct: 16  MNQI-----QRITSA----------SNPLIRLTSAVVHVHRRAAKEGLFTAEGLRLAEMA 60

Query: 61  LNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
               + KI     T+NA     A+           PV  +P      +   E+    L L
Sbjct: 61  -AVSNWKIRCAFLTENAVAGERAQALLRILAARRAPVALIPETMFSNLSETESQQGILLL 119

Query: 117 ETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                     + VR        L +VLD V DP N+G ILR+A A    G+I  +  +  
Sbjct: 120 MERGKNMSLRELVRQRNDVDPPLYIVLDRVQDPGNVGTILRTADAAGASGVILLRGSADV 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIA 230
            S  + ++  GAL H+P+     + + +  + S           D             + 
Sbjct: 180 YSGKVVRATMGALFHVPFAEGIAVMELMDFVRSERVTLCAAACDDGACMHYAADLRQPLV 239

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ G E  G+  +    +    ++ M G  ++LNVS A A  LY      
Sbjct: 240 IVFGNEANGVSEELLAASEH-IYIPMCGSAESLNVSAAVAAVLYEAMRQR 288


>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
 gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
          Length = 526

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 130/306 (42%), Gaps = 33/306 (10%)

Query: 2   NLISKKK--SEKI-----FSLKDSHYAKLRRNHRDY-----------KKMQSFNQKSRHT 43
            +I+  +  S+KI      S K+ H        +D                S  + S   
Sbjct: 130 EMITSNRIFSKKIGRTIGKSEKNYHVRSFSNKSQDLDTSTYFSFINDSNYDSLEKSS--- 186

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQ 99
            + E   ++G H+  AAL +  R I ++  T    +   +   L         V+ V   
Sbjct: 187 -ETEKDLIWGRHSTQAALESG-RPIHRIWCTSEVKSSSKFLQLLKKVKASSVLVEEVSWA 244

Query: 100 TIDKIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + +++G            A        L      +  + LLM ++ + DPHN+GAI+RS
Sbjct: 245 RLGQLIGGSGHQGIALQMAAVETLDLTKLIEDCCHLGENPLLMAVEGLTDPHNLGAIVRS 304

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  +R +   +  +AK A+GALEH+P  R+ NL  +L  +   G++ +GL+
Sbjct: 305 AEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSLDILKDKGYRIVGLA 364

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++    L +   N  + ++ G+EG GL   T+     +  + + G   +LN S A+A+ L
Sbjct: 365 TEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGATPSLNASVASALML 424

Query: 274 YITQNH 279
           Y     
Sbjct: 425 YEVARR 430


>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 286

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 108/288 (37%), Gaps = 23/288 (7%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
             ++  + SL+       RR       +   NQ+ +           G   V  A+    
Sbjct: 2   STETPLLTSLRSPRVVAARR-------LAKRNQRGKERR----FLAEGPQAVREAVAFGR 50

Query: 66  RK-----IFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                  + ++  T  A  R             PV T   + +  I         +AL  
Sbjct: 51  LPDGEHAVVEVYVTAEAAERHADIVAAARAAGRPVLTATEEVVADICDTVTPQGIVALCR 110

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                         +L+ VL HV DP N G +LR+A A   D ++ T       +    +
Sbjct: 111 FIDTPFEQVLAARPKLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVR 170

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILG 234
           ++ G+L H+P      + +A+ ++ + G + +      ++ L+QE          A + G
Sbjct: 171 ASVGSLFHLPVATGVPVEEAVARLRAAGVRVLAADGAGERDLDQELDQGTLEGPCAWVFG 230

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
            E  GL  +T+  A ++  + + G  ++LN++ AAAV LY +     +
Sbjct: 231 NEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLYASARAQRS 278


>gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 291

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 6/272 (2%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K  +  K+   +  ++ +++  +K     + +  F+ GV  ++ AL +       + + 
Sbjct: 1   MKRPNIVKIYSENNQFQYIETLRRKREKRLRHKEFFIEGVRPINQALAHHWTINAFVYSR 60

Query: 75  KNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           +  L+                 VP   ++K+  K    + LAL   P  +     +  + 
Sbjct: 61  EKQLSDWAKGILARSQAQTHFEVPLHLLEKLSNKAESSELLALVAMPEDNLARIPLTQNL 120

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188
           L++V D    P N+G I+RS  A    G+I T             +++G+        +P
Sbjct: 121 LVVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGSFFALPTVRLP 180

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R         K      Q IG    +++ + Q        LI+G E  G+    +E  
Sbjct: 181 SQRDIEPWLQSAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMSAAYKELC 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++  + + G   +LNV+ A ++ LY      
Sbjct: 241 DAVVQIPLVGSASSLNVACATSICLYEVSRQR 272


>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
          Length = 285

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +  ++   +   + L G H +  AL         L            
Sbjct: 11  SRRNPLVKRLRQLHT-AKGRREQGLVLLEGTHLLQEALRLGLEPAHLLATGMWQRNHAPT 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     + TV  + +  +           +  A    P       ++L++ LD V D
Sbjct: 70  LGAIRAGVAITTVTEEVLAAVA---TTDHPDGVVAALPTPPAGWGPATARLVLALDGVQD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----------LEHIPYIRIS 193
           P N+G ++R+A+A   + +   +   P +   L  SA  A             +  +   
Sbjct: 127 PGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALALPLQRGSRETLLHQLGEL 186

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A     +              P  Q        L+LG EG GL  +  + AT    
Sbjct: 187 AARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGAGLSGQLLQRATHRVT 246

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           +     +++LNV+ AAA  L  
Sbjct: 247 IPHSAAVESLNVAVAAAPLLLE 268


>gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
 gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 101/279 (36%), Gaps = 13/279 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL DS           +  +     ++R       L       +  A
Sbjct: 1   MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + +  + G       L      
Sbjct: 48  LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + +
Sbjct: 108 TLPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +    + L+K                          K+A+++G EG GL
Sbjct: 168 MGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 7/263 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQ---PENLFLYGVHTVSAALNNP 64
            EKI   K+S++   RR +RD K     +    +H S       ++LYG+H+V  AL NP
Sbjct: 2   KEKIS--KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNP 59

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            R    L AT NAL RL+       P P+K  PP+ +D +VGK+AVHQG+ LET  L   
Sbjct: 60  KRVFNHLYATPNALKRLN-ITESDVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPR 118

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  + N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGAL
Sbjct: 119 HLSELTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGAL 178

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I YI + NL +AL+++H  GF ++GL S+ + PLE  +   KIALILGAEGKGLR KT
Sbjct: 179 ELIDYITVRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKT 238

Query: 245 QETATSMAHLHMPGIIKALNVSN 267
           +ET  S+A L++PG IK+LNVSN
Sbjct: 239 RETVHSLARLNIPGDIKSLNVSN 261


>gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 264

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 103/267 (38%), Gaps = 10/267 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +         +   K +++   ++R  ++     + G+H + AAL +    +  LLA   
Sbjct: 4   NPTELITSDKNTTVKLVKALLTQARQRNKHGQTVIEGIHLIDAALRSDYPFVQILLAESA 63

Query: 77  ALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                       LP   P+ T+     + I           +    + +P+L  + +  L
Sbjct: 64  HHHPEVQQVLTRLPTYTPILTLSDALYESIRSLGT--GIDIMAVIKMPTPSLSMIHDDCL 121

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++  + V D  N+G +LR+A A     I+ T   + + S    ++  GA   +      +
Sbjct: 122 IL--NDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLS 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           + + L  + +  F T   +               IA I+G EG+G+  +  +   +   L
Sbjct: 180 VQEVLDHVQTPLFATSSHTDTVIYQH---DLKKPIAWIMGHEGQGVCNELMQ-CATPIAL 235

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
             P   ++LNV+ A ++ LY T    +
Sbjct: 236 PQPNGQESLNVAIAGSLCLYETLRQRS 262


>gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 285

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 99/269 (36%), Positives = 152/269 (56%), Gaps = 19/269 (7%)

Query: 17  DSHYAKLRRNHRDY------KKMQSFNQKSRHT---------SQPENLFLYGVHTVSAAL 61
             H+ K  R+   +      +  +    K+ H          +    L L+G+H V AAL
Sbjct: 3   KDHFKKPWRDKNRFSASGGQRYGRPLRAKTPHRGGPASSSGENAEGPLVLFGLHAVEAAL 62

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            NP R++ +L+ T+NA  RL      P    +  V P+ +D+++G + VHQG+ALET PL
Sbjct: 63  KNPKRRVHRLMLTENAERRLIEAVG-PITAKIDRVTPRDLDRLLGPDTVHQGVALETEPL 121

Query: 122 LSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             P  D      + + L+VLD V DPHN+GAILRS+  F   G++ T R+SP  + VLAK
Sbjct: 122 PEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVLAK 181

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SASGALE IP   ++NL  A++++   GF  +GL  +++  +E    +   AL++G+EGK
Sbjct: 182 SASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDWSRPTALVMGSEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GLR  T++T  ++A +   G + +LNVSN
Sbjct: 242 GLRELTRKTCDTLARISTDGPVASLNVSN 270


>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
          Length = 260

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 8/260 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R +   K        +            G             ++  L  T+NAL 
Sbjct: 3   EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALE 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +    A LP       V     DK+      HQG+          TL+ VR     + L+
Sbjct: 61  KCPELAALPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALE 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP I    +  A+
Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAI 176

Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             +   G   +  +    +P    +      + +++G+EG+GL  +T     S   + M 
Sbjct: 177 TLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMT 236

Query: 258 GIIKALNVSNAAAVALYITQ 277
             +++LN   A ++ L+  +
Sbjct: 237 DRVESLNAGIAGSILLWHFR 256


>gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
 gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
          Length = 263

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 146/249 (58%), Gaps = 11/249 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP-V 93
            ++++  +  E ++L+G+H V  AL NP+R+  + + TKNA  RL    D  L    P  
Sbjct: 10  KERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP 69

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIG 148
           +   P+     +  ++VHQG ALE  PL    ++            +++LD V DPHN+G
Sbjct: 70  EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVLLDKVTDPHNVG 129

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I   R++  E+  LAK+ASGA+E  PY+R+ NL DA+ ++ + G+ 
Sbjct: 130 AILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAMGYL 189

Query: 209 TIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++++ +EQ ++  +    AL+LGAEG GLR KT+ET  ++  +   G   +LNV
Sbjct: 190 VLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNV 249

Query: 266 SNAAAVALY 274
           SNAAAVALY
Sbjct: 250 SNAAAVALY 258


>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           CC9311]
          Length = 589

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 21/268 (7%)

Query: 31  KKMQSFNQKSRHTSQPE--------NLFLYGVHTVSAALNNPSRKIFQLLATKNALA--R 80
           K++ S     +   +          +  L+G H   AAL    R I ++  T    +  +
Sbjct: 225 KRLSSPRLDDKPRGESSPHAAEAVADDLLWGRHATQAALEAG-RPIHRIWCTSELRSASK 283

Query: 81  LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133
                         V+ V    + ++ G  AVHQG+ L+TA   +  L+ +         
Sbjct: 284 FLQLLKDAKSSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETFDLEDLVKGCSALDE 342

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+GALEH+P  R
Sbjct: 343 APLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVAR 402

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL  +L+ + S G++ IGL+ +    LE+   +  + ++ G+EG+GL   T+     +
Sbjct: 403 VVNLNRSLETLKSSGYRVIGLAEEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQL 462

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G+  +LN S A A+ LY     
Sbjct: 463 IRIPLRGVTPSLNASVATALCLYEVARR 490


>gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 248

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 107/245 (43%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YG+H V A L    +   ++   +   +   +            +K V  Q +D  
Sbjct: 2   NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLDMQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V K A HQG+            +           + LL+VLD V DPHN+GA LR A A 
Sbjct: 62  V-KGATHQGIIARVQTNRRQFQEQDLPALLAQHTAPLLLVLDGVTDPHNLGACLRCADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
             + II  +  S   +A + K ASGA E +P I+++N   T  L + H+       + +D
Sbjct: 121 GVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIEAD 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S            IAL++GAEG G+R  T++    +  + M G + +LNVS A  V L+ 
Sbjct: 181 SHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VVRQR 245


>gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 235

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 4/233 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + GV+ V   L N  + I +L   K N   +L+    L       +     + I+   G 
Sbjct: 4   IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKLASERNIKIFY-TDKKIENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                               A     ++++LD + DP N GA++RSA  F   GII  +R
Sbjct: 63  AVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  + K+++GA+E++  ++++N+++AL K+    +   G   +  K   +E    
Sbjct: 123 NAVRINETVVKTSTGAIEYVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPS 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + AL+LG+EG G+R K +E    +  + M G I +LNVS A  + L      F
Sbjct: 183 RTALVLGSEGNGIRKKVKENCDVLIKIPMHGKINSLNVSVAGGIILSEIVKSF 235


>gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 246

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H  K R +                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L++ +  I      + A         L     V  + P  +  +       QG+  E   
Sbjct: 40  LSSGAEVISIFALPEYADH-------LSGCKQVYWLSPDLLRDLAD-SKTPQGIVAEVRL 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +    L +  + V DP N+G I+R+A A   DGI  ++  +   +    +S 
Sbjct: 92  QQEVLPEKLSGKYLFL--EDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R++          S         SD     E+   +    L++G EG+G+
Sbjct: 150 QGSHFHLPIYRLATADLIDLAKKSDLPIFASTLSDDSIDYEKLKGSQNFILVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +  A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245


>gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
 gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
          Length = 291

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 12/258 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87
           Y ++     +S    +           +  AL      I   L  ++ L  L+    L  
Sbjct: 19  YARLTERELRSVLEPEKGLFIAESAKVIERALEAGMEPI-SFLVAEDRLESLEPILALVD 77

Query: 88  -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P P+     + +  + G       LA    P L   ++ +   + + VLD + D  N
Sbjct: 78  AAEPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTN 137

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--------RISNLTDA 198
           +GA  RSA A + D ++ +            + + G +  +P+            +    
Sbjct: 138 VGAAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMAT 197

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+                          D++AL  G EG+GL  +  E    +  + M G
Sbjct: 198 LRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAG 257

Query: 259 IIKALNVSNAAAVALYIT 276
            + +LNV+ A+AV  +  
Sbjct: 258 GVDSLNVAAASAVVFWQL 275


>gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
          Length = 326

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 19/290 (6%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSA 59
           K         K++  + L R    +K    F+ K     +     +N   +++G H+V  
Sbjct: 38  KNYENLNKKDKNNTSSSLTRRKPIFKSNTEFSNKKSKYQEEFTSKKNFDDWIWGKHSVYE 97

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           AL +  R I ++  T    +   +   L         ++ V    + ++    A HQG+A
Sbjct: 98  ALIS-QRAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVA 155

Query: 116 LETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L+ A   + +L+           + +++ LD + DPHN+GAI+RSA AF C GII  +R 
Sbjct: 156 LQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRR 215

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L    +   
Sbjct: 216 SAGLTGTVAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLSNFSEIVP 275

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +I+G+E KG+   TQ+    +  + + G   +LN S AAA++L+    
Sbjct: 276 LVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0027]
          Length = 258

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 3/237 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H +  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T       L + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQLLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFEN 256


>gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
 gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
          Length = 244

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +T+  AL    + I+ +    +       +        +K +      K +G   
Sbjct: 7   YIYGKNTILEALK-GEKSIYTVYIQDSIKDNRIIELCKKKKIRIKIIDKSEFIKKLGNVR 65

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E       ++D            LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 66  -HQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D+ +   Q 
Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQI 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             N  + +++G+EG G+    ++T      L M G + +LN S A AV LY   N   
Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYNSRN 242


>gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713]
 gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 248

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100
            + +  F+ G H   AAL      I ++   +   A    +           V  VP   
Sbjct: 2   KEEQKDFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +V  +  HQG+ +  A     T+D               ++LD + DPHN+G+I+R+
Sbjct: 62  LDNLVNGQ-NHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++   G    G  
Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +   K    AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +
Sbjct: 181 MKGTDFRKWSAK-GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 260

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 8/260 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R +   K        +            G             ++  L  T+NAL 
Sbjct: 3   EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALE 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +    A LP       V     DK+      HQG+          TL+ VR     + L+
Sbjct: 61  KCPELAALPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALE 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP I    +  A+
Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAI 176

Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             +   G   +  +    +P    +      + +++G+EG+GL  +T     S   + M 
Sbjct: 177 ALLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMT 236

Query: 258 GIIKALNVSNAAAVALYITQ 277
             +++LN   A ++ L+  +
Sbjct: 237 DRVESLNAGIAGSILLWHFR 256


>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
 gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
          Length = 257

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H  +     + G+  V  A+ +       +          D    +     +  +    +
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKSKVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEALL 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   E     + +             ++ +L++++D V DP N+G I+R+A A    G
Sbjct: 83  KQLCSTENPQGIVGVINMQNKEL-----KSGELVVLVDKVQDPGNMGTIIRTAHAAGAAG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK      +    +S  G++ +IP +   +L              +      K    
Sbjct: 138 IVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSLDFVKSLKKEGYKLVVSS-LQGKNNFF 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E    K+ + +G EG G+  K  + A     + MPG  ++LNV+ A ++ +Y       
Sbjct: 197 EENLQGKVMIAVGNEGNGVSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQSF 256

Query: 282 K 282
           K
Sbjct: 257 K 257


>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. CB0205]
          Length = 406

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDANLPH--PFPVKTVPPQTIDKIV 105
            ++G H   AAL +  R + ++  T       R              V+ V    + ++ 
Sbjct: 73  LIWGRHAAQAALESG-RPVHRIWCTPEMRFQPRFLQLLREAKSGGVLVEEVTWSRLGQLT 131

Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              AVHQG+ ++ A   +  L         +    LLM LD + DPHN+GAI+RSA A  
Sbjct: 132 -NGAVHQGIVMQAAAADTLDLGTLIDGCRDLGEPPLLMALDGITDPHNLGAIVRSAEALG 190

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   +  +AK A+GALEH+P  R+ NL  AL  + + G++ IGL+ +   
Sbjct: 191 AHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKNEGYRVIGLAGEGSV 250

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +   +  + ++ G+EG GL   T++    +  + + G   +LN S A A+ LY    
Sbjct: 251 ALSEADLDGPLVVVTGSEGDGLSMLTRKHCDQLVRIPIRGATPSLNASVATAMVLYEVAR 310

Query: 279 H 279
            
Sbjct: 311 R 311


>gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 249

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
             N F++G H     L    S KI ++   +      AR  +         ++ VP   +
Sbjct: 4   TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           DK+ G E  HQGL L  A       D          +  L++LD++ DPHN+G+ILRSA 
Sbjct: 64  DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G + +
Sbjct: 123 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY 
Sbjct: 183 GDDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 241

Query: 276 TQNHF 280
             N  
Sbjct: 242 AFNSR 246


>gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115]
          Length = 246

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++ +  I ++ A      RL   + +        V P+ +  +   +     +A     
Sbjct: 40  VSSGAELI-RIFALAEYAERLADFSQM------IFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +   +    + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REKIPEELSGHY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+      +    S         S +     +    +  AL++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTADFIILAQSSGLPILASTLSSASIDYREVGSKESFALVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 260

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 26/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+ K +  +  ++     K R                    + +   + G   V  A
Sbjct: 1   MNTITSKDNNLVKFVRKLRDKKHR-------------------KKEKKFIVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +     + L+  K  N +   + +  +     V  +   + + I G E    G+    
Sbjct: 42  LKSDYCIEYILINEKSLNKVQEFNINIEVIEN-KVYILNESSFNSISGTENSQ-GILAIV 99

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  L   +   L ++ D V DP N+G I+R+A A +  GI+ T+      +    +
Sbjct: 100 NMKEVLKL---KEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLR 156

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S+ G++ +IP I    L                    +K   + ++    + L +G EG 
Sbjct: 157 SSMGSIFYIPVIEDFKLDKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAVGNEGS 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+  +    +     + MPG  ++LN   A ++ ++       K
Sbjct: 217 GVSEEVYNISDETFIIPMPGNAESLNAGVATSIIIFEIVRQNLK 260


>gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
          Length = 280

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 101/279 (36%), Gaps = 13/279 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL DS           +  +     ++R       L       +  A
Sbjct: 1   MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + +  + G       L      
Sbjct: 48  LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + +
Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +    + L+K                          K+A+++G EG GL
Sbjct: 168 MGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 249

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 10/254 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
               ++S +QK ++  +     + G+ ++   +++  +        +           LP
Sbjct: 6   QISFIKSLHQK-KYRKENGIFIIEGIKSIEEFIHSNYQVHSIYYLAQYQ----SLLPALP 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V    +DKI   +     LAL   P       A   +   +VLD V DP N+G
Sbjct: 61  ANIKLFEVNNAELDKISTLQTPQGILALVNIPEPPLFKPATPKNLFSLVLDGVQDPGNMG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A  F    II +       +    ++  G+L  +                     
Sbjct: 121 TIIRTADWFGFKNIICSNNCVEVYNPKTVQATMGSLSRVNIFYEDLPGILTNVKLPVFGA 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +   S  K     E       +ILG EG+G+ P   +  T    +   G  ++LNV+ +
Sbjct: 181 VLDGKSIYKTDWGNEGL-----VILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAIS 235

Query: 269 AAVALYITQNHFAK 282
           AA+       +  K
Sbjct: 236 AAILCADISRNLNK 249


>gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 234

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+  +LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1342]
          Length = 258

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
 gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
 gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX4000]
 gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2141]
 gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0031]
 gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0312]
 gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0645]
 gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1302]
 gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309B]
 gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309A]
 gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
 gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
          Length = 258

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
 gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
          Length = 345

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 13/268 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARL 81
           +    ++     Q     S  E+  + G ++V  AL         L        +   + 
Sbjct: 73  DAPQQQRSTRPAQSRVAKSADESEMVTGRNSVLEALRA-KIPAHTLYMATRIEYDDRVKE 131

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQL 134
                      V  V    +D++ G ++VHQGLAL+  P            ++A     L
Sbjct: 132 ILKLATSRGIAVLEVMRPELDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVPL 191

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD + DP N+GAI+RS  AF   G+I  +R S   +A   K+++GA    P    +N
Sbjct: 192 LVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMANN 251

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           LT  +++    G   +GL  D    L       + + +++G+EGKGL     E   ++  
Sbjct: 252 LTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIVS 311

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + +    ++LN   AA+V LY      +
Sbjct: 312 IPISASTESLNAGIAASVTLYEISKLRS 339


>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 249

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 9/246 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           + +  Q  +   Q     + G+ +V+  L++    +  L  T N   ++     +PH   
Sbjct: 9   LITSLQHKKFRKQHSLFVVEGIKSVTEFLSSAYD-VHALFYTANVTTKV---VKIPHNIK 64

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
              +      KI   ++    LAL   P           +Q  +VLD V DP N+G I+R
Sbjct: 65  SYELTDNEFSKISQLKSPQGILALVRLPEEKTPEQLDFANQFTLVLDDVQDPGNLGTIIR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A  F    I+ +     + +  + ++  G+L           +             +  
Sbjct: 125 TAEWFGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHYTDLESFIRTVRLPVFGALLDG 184

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +S  +    +E       +++G EG G+  K  +       +   G  ++LNV+ A  + 
Sbjct: 185 TSIYETRWGKEGL-----ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIF 239

Query: 273 LYITQN 278
                 
Sbjct: 240 CNEIAR 245


>gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 234

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWIYGAAGEANINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
          Length = 556

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 13/253 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPV 93
           +  R  + P +  ++G H   AAL +  R I ++  T     +                V
Sbjct: 203 ESERFNAGPADDLIWGRHAAQAALESD-RPIHRIWCTPEMRFQPRFMQLLREAKAGGVLV 261

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146
           + V    + ++    AVHQG+ L+ A   +  L        ++    LLM LD + DPHN
Sbjct: 262 EEVTWARLGQLTD-GAVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPHN 320

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G
Sbjct: 321 LGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEEG 380

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           ++ IGL+ ++   L +   +  + ++ G+EG GL   T++    +  + + G   +LN S
Sbjct: 381 YRVIGLAGEAGVALSEADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNAS 440

Query: 267 NAAAVALYITQNH 279
            A A+ LY     
Sbjct: 441 VATAMVLYEVARR 453


>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 272

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 25/278 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+   ++ I S++  H                     +           G+  +  AL+
Sbjct: 12  VITSLTNDTIKSVRALHM-------------------RKERDLTGAFLAEGLKFIGEALD 52

Query: 63  NPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                   LL  + A      D            +  V    ++KI  ++     L +  
Sbjct: 53  LGRAP-RMLLVGEEARPHPLLDRAKAETRKAGGDIIIVTHAILEKISRRDNPQTVLGVFD 111

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                       ++   + L+ V DP N+G I+R+A A  C G+I         S    +
Sbjct: 112 QAYAPLDSLDPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEAVR 171

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  G++     I  ++    L    +W    +G   D+       +      +++G E  
Sbjct: 172 ATMGSVF-AVSITRTDPEAFLAWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMGNEQA 230

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +          + M G   +LN++ A  + +Y  
Sbjct: 231 GLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVYAA 268


>gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 261

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  DA        + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+          LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+     
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            G ++ +     +      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249


>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
          Length = 257

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 102/255 (40%), Gaps = 5/255 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              L   +   K       K +   + +   L G H V  A+   + K   ++AT+  +A
Sbjct: 2   DRILSNQNSRVKAWAKLATK-KGRLENKTYLLDGWHLVEEAIKAKA-KFHAVMATEAQMA 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
               D   PH  P   +  +    I G     QG+  E +        +  +    ++LD
Sbjct: 60  EHLPDV--PHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPDKTFDPSYVHDGAWLLLD 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ++R+A A    G++  +  + + S  + ++  G+  H+  +         
Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLEVLNGDLNEWTD 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               +          ++ +   Q   + + ALI+G EG+G+  +     T+  ++ + G 
Sbjct: 177 ALTANGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAAKTTANLYIPIQGQ 236

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ A  + ++
Sbjct: 237 AESLNVAIAGGILMF 251


>gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
 gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
          Length = 270

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 9/251 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKN 76
           R  R  +   +  ++ R                 LYG H+V+ AL NP RKI +LLAT+N
Sbjct: 4   RPRRPARPYHASQRQPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATEN 63

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL+ + ++P     + V P  ID+++  +AVHQGL  E  PL + +L     S LL+
Sbjct: 64  AAKRLEEE-SIPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLL 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAI+RSA A     I+TT R+SP+ + VLAKSASG LEH+P+  + NL 
Sbjct: 123 VLDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLA 182

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L+++   G Q +GL S+    L        +AL+LGAEGKGLR  T++T  ++A + +
Sbjct: 183 RTLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDL 242

Query: 257 PGIIKALNVSN 267
           PG I +LNVSN
Sbjct: 243 PGAIVSLNVSN 253


>gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 257

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 7/256 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                 +   ++S   S        G   V  AL     ++ +L  T+ A  R       
Sbjct: 7   PRVVAARRLTRRS-ERSAAGRFLAEGAQAVREALRYG--RVHELFVTEAAAQRHTELVAD 63

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +  +  + +    +    +A+     +  +       +L+ VL ++ DP N 
Sbjct: 64  AP--SVSMINDRAAELLSETVSPQGIVAVCDTVTVDLSAALTGRPRLVAVLVNIADPGNA 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G +LR A A   D +I         +    ++++G+L H+P +   ++   L    + G 
Sbjct: 122 GTVLRVADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLPVVAEPDVHRVLDACVAAGL 181

Query: 208 QTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            T+     ++      E  +   A + G E  GL       A     + + G  ++LN++
Sbjct: 182 TTVAAHGYAEADLTTAEQLDGPTAWLFGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLA 241

Query: 267 NAAAVALY-ITQNHFA 281
            AAAV LY     H +
Sbjct: 242 TAAAVCLYTTAVRHRS 257


>gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens
           TC1]
 gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           aurescens TC1]
          Length = 330

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 121/296 (40%), Gaps = 36/296 (12%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPE-----------------NLFLYGVHTVSAALN 62
            A+ R  H+ YK  +   ++S                           + G ++V  AL 
Sbjct: 35  KAEERTYHKAYKN-KQLAERSAAKRGSGTRPGGAGARSGPKGRATEELVTGRNSVVEALR 93

Query: 63  NP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                      +    +   +           P+       +D++  ++AVHQGL L+  
Sbjct: 94  AGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKVELDRMT-EDAVHQGLVLQIP 152

Query: 120 PLLSPTLD-------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           P                     + N+ + + LD + DP N+GAI+RS  AFS  G+I  +
Sbjct: 153 PYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRSVSAFSGHGVIVPE 212

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIK 225
           R S   +A   K+++GA   +P  R +NL +AL++  + G   +GL  D    L    + 
Sbjct: 213 RRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLDGDGDVSLPDLTVA 272

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + + +++G+EGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 273 TEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRA 328


>gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 240

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 8/231 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237


>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 264

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 99/247 (40%), Gaps = 3/247 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S +++S    +     + G   V  A+   +  +  +  T  A+ R        
Sbjct: 9   RVKSVRSLSRRS-ARERTGRFVVDGPQGVREAIRYAAPLVDDIYVTAEAIERHQDLIAAA 67

Query: 89  HPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               +         +  +   E+    LA+  A   +         +L+++L +V DP N
Sbjct: 68  QDADIHLHETDDAVLAAMSDTESPQGVLAVVAAQAHTLEQVLATAPRLVVLLSNVRDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ++R A AF  D ++ T       S  + +S  G+L H+P +   ++ + L  + + G
Sbjct: 128 AGTVIRGADAFGADAVLVTDGSVDVLSPKVVRSTVGSLFHLPVVTGLDVNETLDALAAHG 187

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +T          L     +   A ++G E  GL  + ++    +  + +   +++LN++
Sbjct: 188 IRTYAADGVGTTLLPDVDVSQPHAWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLA 247

Query: 267 NAAAVAL 273
            AA + L
Sbjct: 248 MAATICL 254


>gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 248

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP-QTIDKIVG 106
            +YG+H V + +     K   +    NA  +++            V  +   + +   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ +                  L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
            A
Sbjct: 244 RA 245


>gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 234

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + I+   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +      ++  L++VLD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E  ++
Sbjct: 123 NSVRINETVVKTSTGAIEYVDISKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
 gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
          Length = 244

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  ++YG+  +  A+ +     K++ L   +  L          H      VP + +DK
Sbjct: 2   EKTTYIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           I      HQG     +P+   +L+ +       + ++ ++LD V D  N GAI+R+A   
Sbjct: 62  ISSH-GNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECT 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               II  +  S   +    K+++GA+ +IP  ++S++ DA+  M ++G  TIG +  S 
Sbjct: 121 GVSAIIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKST 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +     N  IAL++G+E +G+ P T +       L M G I +LNVS A    LY   
Sbjct: 181 KLVYDIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILYEIV 240

Query: 278 NH 279
             
Sbjct: 241 RQ 242


>gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
 gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As]
 gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
          Length = 262

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 27/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  +                  +   K ++S + +     +   ++L G+H + AA
Sbjct: 1   MKRITSAE------------------NPLIKTLRSLSTEPGAVRKLGQVWLEGIHLIEAA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         +      L                 V  Q +   +               
Sbjct: 43  LAAGHAAEPLITTDTGLLDPEIAALVERVGTTQTVVLHQALFNWI----TAVENGPPVGM 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L++    +       ++LD V D  N+G +LR+A A  C  +   +  +   S  + +SA
Sbjct: 99  LIARPKSSKPRPGSALILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSA 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA   IP          L  +    + T   +             + +  I G EG+G+
Sbjct: 159 MGAHFVIPVFEDPPWEQVLNIVPRPIYATHMQADTVLYE---LDLKEPVTWIFGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
                   +++  +     +++LNV+ +AA+ LY    Q+ F+K
Sbjct: 216 SDALVAKCSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259


>gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           veneficus SNP6]
          Length = 227

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 5/230 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YGV++V  AL    +K  ++                    P+  VP + +     +   
Sbjct: 3   VYGVNSVVEALKA--KKANKVYLATGNRRDRLERMARRAGVPIVYVPKEKL-PPDSQGVA 59

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                +    +       +R +  L+ LD V DP N+GA +R+A  F C G++  KR + 
Sbjct: 60  ADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCAGVVIPKRRAV 119

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + K ++GA  H+   R +       K        +  +    + +E        A
Sbjct: 120 QVNETVVKVSAGAALHVSIARDNIT--NALKKAKKFGIKVIGAELDGENIENADLTPPAA 177

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++G E +G+    ++    +  +   G + +LN+S AA + +Y      
Sbjct: 178 LVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMYEFSKSL 227


>gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 246

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ ++   K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAF 157
             V  E     +A      +    D  +        L++VLD V DPHN+GA LR+A   
Sbjct: 62  DKVSGEQHQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++ 
Sbjct: 122 GVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L         AL++GAEGKG+R  T+ET   +  L M G + +L VS A  V LY   
Sbjct: 182 KTLYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter
           autotrophicus Py2]
          Length = 288

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 1/229 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+ A+ NP R+  +L AT+NA+ RL  +  L  P   + V P  IDK++G +A
Sbjct: 56  LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEE-GLTPPIAPEIVRPGDIDKLLGADA 114

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E   L SP L  +  + L++VLD + DPHN+GAI+RSA AF+   I+TT R+S
Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P+ + VLAKSASG LEH+P+  ++NL  AL ++   G   +GL S+    LE       +
Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA++L + + 
Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMARR 283


>gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 255

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTI 101
             N F++G H     L    S KI ++   +      AR  +         ++ VP   +
Sbjct: 10  TNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKNKL 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           DK+ G E  HQGL L  A       D          +  L++LD++ DPHN+G+ILRSA 
Sbjct: 70  DKLTGGE-NHQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRSAD 128

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G + +
Sbjct: 129 ATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTAME 188

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +    N KI L++G EGKG+ P   +       + M G +++LN S A  V LY 
Sbjct: 189 GDDYRKWN-ANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLLYQ 247

Query: 276 TQNHF 280
             N  
Sbjct: 248 AFNSR 252


>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 252

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT++A  R           PV  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ T P +  T        L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCTLPEVDLTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP I   +  D + ++   G Q +        
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADVVTQLKDAGLQVLATVLGGSV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L++   +   A + G E  GL  +    AT+   + M G  ++LNV++AAA+ LY
Sbjct: 184 SLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVEIPMTGGAESLNVASAAAICLY 239


>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
 gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
          Length = 652

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 19/281 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIF 69
           +     +       +      +Q+     + E      +  ++G H   AAL +  R I 
Sbjct: 251 RSGDERRQSSPRPRFGDSGPRSQRPNLQPEAEASTPPADDLIWGRHASQAALESG-RPIH 309

Query: 70  QLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           ++  T       +              V+ V    + ++ G  +VHQG+AL+TA   +  
Sbjct: 310 RIWCTPEMRSAPKFLQLLREAKTSGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLD 368

Query: 126 LDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L A+           LL+ LD + DPHN+GA++RSA A    G++  +R S   +   AK
Sbjct: 369 LSALIEGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAK 428

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GA+EH+P  R+ NL  +L+K+   G++ IGL+++    L        + L+ G+E +
Sbjct: 429 VAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVTLMDVDLEGPLVLVTGSEDQ 488

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           GL   T+     +  + + GI  +LN S A A+ +Y     
Sbjct: 489 GLSLLTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 529


>gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 254

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  I  +K  H  K R +                     +  + G H    A
Sbjct: 7   MNIITSKSNNGIKKVKKLHQKKYRTD---------------------SYLIEGWHLYEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N    I  +   ++ + ++  D        V  V P+ + +I   ++   G+  E   
Sbjct: 46  V-NHQAPIEHVFVLEDFVDKIKVD------TKVTIVTPEVLSEITDSKSPQ-GIVAEIKI 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L   +   LL+  + V DP N+G ++R+A A   DG++ T + +   +    +S 
Sbjct: 98  QPIQHLQLTQGRYLLL--EDVQDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P IR+           S         S +    +Q  K     L++G EG+G+
Sbjct: 156 QGSHFHLPVIRLPKEQLLTAIEESQLPIYATTLSQNSVDYKQVEKVPAFVLVMGNEGQGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 216 SSKMAESADQLVHITMPGQAESLNVAVAAGILIF 249


>gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
 gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
          Length = 282

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 92/248 (37%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  AL+     +  L   ++             
Sbjct: 17  FSALTEAQLRNRLDPAKGVFIAESPKVIRVALDAGYEPLSLLCERRHLTGDAADILARVG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G       L     P +    +  ++++ ++V+  V D  NIGA
Sbjct: 77  DIPVYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+       + L+++       
Sbjct: 137 IFRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWADRPLECLKELGFKTAAL 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                          +  ++AL++G EG GL     + A  +A + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 263

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 5/261 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARL 81
              +   K +    +  RH  +     + G      A+         ++  +      R 
Sbjct: 5   SPQNPRIKALARLKE-RRHREREGRCLVEGPREAQRAVAAGVPVELAVVWPEGLGPEERT 63

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +       PV  V  + + ++  +E     + +                  ++V  + 
Sbjct: 64  LLEGLTARGVPVLEVAEEPMRRVSYRENPGGLVLVARPSFPRLEALDPPPHAPVLVAVNP 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+GAILRSA A                       +S  +        ++   AL  
Sbjct: 124 EKPGNLGAILRSADAAG--AGAVVAVGGVDLMNPNVIRSSTGVVFTLPTAAASSEAALDW 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G + +  S  ++    +      +A+ +G E  GL P+  E A     + M G   
Sbjct: 182 VRARGRRLVAASPHAETSYWEVDLTGAVAIAVGPEHAGLPPEWLEAADVRVRIPMCGRAD 241

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNVS +AA+ LY      +K
Sbjct: 242 SLNVSVSAALLLYEALRQRSK 262


>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 91/269 (33%), Gaps = 11/269 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI---FQLLATKNALA 79
           +          +   +++    +       G   V  A  +    +    +L  T  A  
Sbjct: 12  ISSRSPRVLAARRLAKRN-FRGKERLFLAEGPQAVREAAAHREGPVPTLVELFTTPEAAE 70

Query: 80  RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V     Q I  I         + +                +L+ V
Sbjct: 71  RYADIVGGARGAGARVHLASEQVIADISTTVTPQGLVGVCRFLDTPFEQILAARPRLVAV 130

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L HV DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  
Sbjct: 131 LAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAIGVPVEQ 190

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A+  +   G + +       + L+ E          A + G E  GL  +T+    ++  
Sbjct: 191 AVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALTDAVVR 250

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281
           + + G  ++LN++ AAAV LY +     A
Sbjct: 251 VPIHGKAESLNLATAAAVCLYASARAQRA 279


>gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
 gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
          Length = 271

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 8/247 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           ++   +           +  ALN     +  L+  K                PV T    
Sbjct: 25  NKDHPEEGMFIAESPKVIERALNAGYTPVAVLVEKKQIEGEAASVLARCDEIPVYTAEFD 84

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + ++ G +     L       L       +N++ + VL++V +P N+GAI RSA A + 
Sbjct: 85  VLAQLTGFKLTRGMLCAMRRRGLPEVEKVCQNAKKVAVLENVMNPTNVGAIFRSAAALNM 144

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------ 213
           D ++ T   S       ++ + G +  IP+  I    +   +        +G        
Sbjct: 145 DAVLLTGGCSNPLYRRASRVSMGTVFQIPWTFIGEKQEDWIENGIRRLHGLGFQTAALAL 204

Query: 214 --SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                    ++  +  K+A+ILG EG GL  +T         + M   + +LNV+ A+AV
Sbjct: 205 SDDSVSIDDKRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAV 264

Query: 272 ALYITQN 278
           A +    
Sbjct: 265 AFWELGR 271


>gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama]
 gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu
           str. Miyayama]
          Length = 243

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 6/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           Q E + ++G H   AA+ NP R I  +   +   A             +       I KI
Sbjct: 2   QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61

Query: 105 VGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            G++A+HQG+A+ T     P L   L +     L+++LD + DP NIG ILRS+ AF  D
Sbjct: 62  CGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    L   ++  L
Sbjct: 122 ALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
            +    +K+A +LG+EGKG+    +        + M       ++NVSNAAA+A++
Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237


>gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 297

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 15/287 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSA 59
            +  S++            R +  + ++ +      +          ++ +L+GVH V A
Sbjct: 6   ERNDSKRPKGKNRPEKNAGRPHAPEQQRPRQAENAPKPQSFQKSKVNDDGWLWGVHAVEA 65

Query: 60  ALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AL N +R+   +L  ++     +           V T+    I +++ + AVHQG+AL  
Sbjct: 66  ALKNVNRQGPLKLYLSEERTKTIAPALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHG 125

Query: 119 APLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             L    L+        ++++LD V DP NIGAI RSA AF   G++   R+SP    VL
Sbjct: 126 PVLEGVGLESIMEGGDGVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVL 185

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT-------IGLSSDSKKPLEQEIKNDKI 229
           AK+A+GA + +P+ R++NL+ +L+ +   G+ +                     I   K+
Sbjct: 186 AKTAAGAADRVPFARVTNLSRSLELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKL 245

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            L+LG+EG+GLR    E    +A + MPG  ++LNVS+AA+++LY  
Sbjct: 246 VLVLGSEGEGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEA 292


>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 246

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGQALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +       +   D           +  +  + + G     QG       
Sbjct: 42  YQSNLTIKQLFIIEPERTEQALIDYAEET----FQINMKVAETLSGTI-TPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A +    ++++D + DP N+G ++R+A A   D I+  K  + +    + +++
Sbjct: 97  PNYDVTHAKQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +         Q         +  +   K    QE      AL+LG EG G+
Sbjct: 153 QGSVFHIPVVTADLQGFIKQFEGPVFGTALENAVSYKNLDPQETF----ALLLGNEGDGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NNALLEHTTKNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 262

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 99/265 (37%), Gaps = 14/265 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL----NNPSRKIFQLLATKNAL 78
           L   +   K+++   ++S   ++       G   V  AL    ++ +  + ++ AT+   
Sbjct: 5   LSSGNSRLKEIRKLGRRS-VRAERGLFLADGPKAVEGALGTVLDSGASCVQEIFATEAGA 63

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
              +  A L    PV  V  + +  +        G+      L  P  D      L+++ 
Sbjct: 64  ---ETYAALLADSPVTLVDDRAMAGLSD-SVTPAGVVALCRFLDVPLADIAGP--LVVIC 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             V DP N G ++R A A    G+I         +    +++ G+  H+P     +   A
Sbjct: 118 ADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFHLPVAVERDPVAA 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           ++   + G   +         L           A ++G E  GL P+    A  +  + +
Sbjct: 178 VKAAKAAGLTVLAADMHGTADLFSADDLLARPTAWLMGNEAWGLPPELAAEADEIVSIPI 237

Query: 257 PGIIKALNVSNAAAVALYITQN-HF 280
            G  ++LN+S AAA+ LY +     
Sbjct: 238 FGKAESLNLSTAAALCLYASARAQR 262


>gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
 gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
          Length = 324

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 12/256 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPV 93
             +S    Q     + G ++V  AL    P+  ++       +   R           P+
Sbjct: 70  QGRSGTQRQRGTEVIGGRNSVLEALRARIPATTLYVASRVDADDRIREILRIGTGRALPL 129

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHN 146
                  +D++    AVHQG+ L   P             +      L++ LD + DP N
Sbjct: 130 IETTKTELDRLAD-GAVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRN 188

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+LRSA AF   G++   R S   +A   K+++GA   +P  R +NL  ALQ+  + G
Sbjct: 189 LGAVLRSAGAFGAHGVLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAG 248

Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +GL  D    +      +  + L++G+EGKGL    +ET   +A + +   +++LN 
Sbjct: 249 CFVVGLDGDGPGMVGDLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNA 308

Query: 266 SNAAAVALYITQNHFA 281
           S AA++ALY      A
Sbjct: 309 SVAASIALYEVARRRA 324


>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 249

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 7/246 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT++A  R           PV  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ T P +           L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCTLPEVDLAEVLTGEPTLVAVPVGISEPGNAGTVIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP I   +    + ++   G Q +        
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAVGVVTQLKGSGLQVLATVLGGSV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--IT 276
           PL++   +   A + G E  GL       AT+   + M G  ++LNV++AAA+ LY    
Sbjct: 184 PLDEVDLSGPTAWLFGPEAHGLPADVVALATAGVEIPMAGGAESLNVASAAAICLYQSAA 243

Query: 277 QNHFAK 282
            +  A+
Sbjct: 244 AHRRAR 249


>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
 gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
          Length = 255

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ ++                            +   +     L G H V  A
Sbjct: 1   MEIITSNQNSRVKIWTSLQTL-------------------KGREKSGTYMLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N +  I  ++AT+  + +   D   P   P   V  + + + + K    QG+  +T+ 
Sbjct: 42  L-NQAAPIQAVIATEEQMDQHLIDV--PQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       ++   ++LD + DP N+G ++R+A A    G+  +K  +   +  + ++ 
Sbjct: 98  PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  ++  +L D + K+ +  +   G + S++    +  +     ALILG EG+G
Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + P+ Q   +   H++  G  ++LNV+ A  + ++   
Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFALN 255


>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
          Length = 334

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 19/288 (6%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENL--FLYGVHTVSA 59
           KK      + + + ++  +R +  +K    F+ K+    Q      N   +++G H+V  
Sbjct: 46  KKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVYE 105

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            L +  R I ++  T    +   +   L         ++ V    + ++    A HQG+A
Sbjct: 106 TL-SSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-CGASHQGVA 163

Query: 116 LETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L+ A   +  L+           + +++  D + DPHN+GAI+RSA AF C G+I  +R 
Sbjct: 164 LQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRR 223

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  +AK A+GALEH+   R+ NL  AL+++   GF  +GLS D +  +    +   
Sbjct: 224 SAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKAP 283

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + +++G+E KG+   TQ+    +  + + G   +LN S AAA++LY  
Sbjct: 284 LVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLYHL 331


>gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
 gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
          Length = 303

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +  +  +           +  AL+   + I  L   K    R +       
Sbjct: 45  YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCG 104

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G E     L     P      +  RN++ + VL+++ D  N GA
Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGA 164

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I+RSA A   D ++ T            + + G +  IP+  I       Q         
Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                       +      +      ++A+ILG+EG GL  KT +       + M   + 
Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV  AAAVA    +
Sbjct: 285 SLNVGAAAAVAFRELR 300


>gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 246

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H  K R +                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119
           L++ +  I        ++  L   A+       V  + P  +  +       QG+  E  
Sbjct: 40  LSSGAEVI--------SIFALPEYADRLSGCEQVNWLSPDLLRDLAD-SKTPQGIVAEVR 90

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  + +    L +  + V DP N+G I+R+A A   DGI  ++  +   +    +S
Sbjct: 91  LQQEVLPEKLSGKYLFL--EDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRS 148

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+  H+P  R++          S         SD     ++   +    L++G EG+G
Sbjct: 149 MQGSHFHLPIYRLATANLIDLAKKSDLPILASTLSDDSIDYQKLKGSKNFILVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +    +  A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245


>gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 267

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 5/253 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   G   V   L++P   +  LL     +A L  D    
Sbjct: 17  DFRDLTTADRRPDRPGGRGLVIAEGTVVVRRLLDSPY-PVRALLGVPKRIAELADDLATV 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      Q +  +VG       LA+          + V N+++L VL+ VND  N+G
Sbjct: 76  -NAPAYVTSAQIMSDVVGFHLNRGVLAVADRAPKPTFDEVVANARVLAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A AF  DG++     +        + + G +  +P+        AL ++  +GF 
Sbjct: 135 AMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGFH 194

Query: 209 T---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  S         E   ++IAL+ G+EG GL     + A S   + M   + +LNV
Sbjct: 195 LAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLNV 254

Query: 266 SNAAAVALYITQN 278
           + AAAVA Y    
Sbjct: 255 ATAAAVAFYELTR 267


>gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 258

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKVNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +        +  + + K +                 + +        L++  ++V D
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNTLPCLAIIDLPKTASTIDYSVDTLIL--ENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K  
Sbjct: 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T    S S    +    +     ILG EG+G      + A     +  PG  ++L
Sbjct: 185 IPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
 gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
          Length = 316

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 16/244 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G   V  AL      I +++  ++   A              PV+ VP   +       A
Sbjct: 74  GRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARLRHESD-GA 132

Query: 110 VHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            HQG+   TAP+    +DA+                +L+V+D V DP N GA+LRSAVA 
Sbjct: 133 THQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVAA 192

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    ++
Sbjct: 193 GTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTAE 252

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++   
Sbjct: 253 TPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAA 312

Query: 278 NHFA 281
               
Sbjct: 313 RSRT 316


>gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K  + +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGEIVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E  ++
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM
           13855]
          Length = 253

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 16/244 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G   V  AL      I +++  ++   A              PV+ VP   +       A
Sbjct: 11  GRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARLRHESD-GA 69

Query: 110 VHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            HQG+   TAP+    +DA+                +L+V+D V DP N GA+LRSAVA 
Sbjct: 70  THQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVAA 129

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    ++
Sbjct: 130 GTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTAE 189

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++   
Sbjct: 190 TPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFEAA 249

Query: 278 NHFA 281
               
Sbjct: 250 RSRT 253


>gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112]
 gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
          Length = 248

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
             
Sbjct: 244 RT 245


>gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
 gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
          Length = 248

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            + + ++G+H V + L     ++ +L  ++        +            + +P Q +D
Sbjct: 2   SQKVTVFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRPQWIPRQALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K   +   HQG+      L           ++  + + L +VLD+V DPHN+GA +R+A 
Sbjct: 62  KRA-EFGNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +  + K A GA+++IP + ++NL  AL+ +       +G + +
Sbjct: 121 AAGATAVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGE 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + K L Q      +AL++GAEGKG+R  T+ET   +A + + G + +LNVS A+ V L+ 
Sbjct: 181 ADKSLYQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFE 240

Query: 276 TQNHF 280
                
Sbjct: 241 AVRQR 245


>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 259

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 14/255 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +N+   K  +    + R   +     + G H + AAL   +      L  +      D+
Sbjct: 4   SKNNPKIKSAKKLLSR-RGREKAGQYLIEGPHLLEAALEAGADLAEVFLTPE---HEADF 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                     +          +      QG+          +L     + LL+  D V D
Sbjct: 60  KLANQTLISPEIASE------LSDTQRDQGVFAVVNRDQKASLKPASPAVLLL--DGVQD 111

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RSA AF+   I   K      S  + +S  G+  H+   ++           
Sbjct: 112 PGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVRSMQGSQFHVRLHQVVLEEAMASLRK 171

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +         +D  + LE        K  +ILG EG G+RP+    +    ++ M G  +
Sbjct: 172 AGYCLAATELNDQAQALETYNLKKRQKWGIILGNEGNGVRPEIIAASDISLYITMLGQAE 231

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ A ++A++  
Sbjct: 232 SLNVAIAGSIAMHHF 246


>gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 280

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 13/279 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I       I SL DS           +  +     ++R       L       +  A
Sbjct: 1   MPIIE------ISSLTDSGVE-------IFSTLTEAQLRNRIEPDKGLLIAESPKVIHVA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN     +  L   K+               PV T   + +  + G       L      
Sbjct: 48  LNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRRR 107

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + +
Sbjct: 108 ALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  IP+  +    + L+K+                         K+A+++G EG GL
Sbjct: 168 MGSVFLIPWTWLDGSPNELRKLGFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 228 QNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 303

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +  +  +           +  AL+   + I  L   K    R +       
Sbjct: 45  YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCG 104

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G E     L     P      +  RN++ + VL+++ D  N GA
Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGA 164

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I+RSA A   D ++ T            + + G +  IP+  I       Q         
Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                       +      +     +++A+ILG+EG GL  KT +       + M   + 
Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV  AAAVA    +
Sbjct: 285 SLNVGAAAAVAFRELR 300


>gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
 gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
          Length = 243

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           Q E + ++G H   AA+ NP R I  +   +   A             +       I KI
Sbjct: 2   QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61

Query: 105 VGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            G++A+HQG+A+ T     P L   L       L+M+LD + DP N+G ILRS+ AF  D
Sbjct: 62  CGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    +   +   L
Sbjct: 122 AIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
            +    +K+A +LG+EGKG+    +        + M       ++NVSNAAA+A++
Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237


>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 245

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A  +    I  +   +    RL           V  V P+ + +
Sbjct: 22  HRKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +       QG+  E          +     L++  + + DP N+G I+R+A A   DG+ 
Sbjct: 75  LTSSP-NPQGIIAEVKLCQQALPTSYAGKYLIL--EDIQDPGNLGTIIRTADAAKFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   +    +S  G+  H+P  R      +               S      +  
Sbjct: 132 LSEKSADVYNQKTLRSMQGSHFHLPIWRTDIYQVSQVMQQQKIPVLATTLSQDSIDYKDL 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL+LG EG+G+ P+    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 SARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242


>gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 245

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + ++  + G H    A  +  +    +   +    R+           V  V    + +
Sbjct: 22  HRQQSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   ++   +S  G+  H+   R        +             S      +  
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLSIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 PHQESFALVMGNEGQGISAEMTALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 255

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +  + L   +                 V  +     
Sbjct: 23  YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAIA 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +   +   +                 LL   D++ DP N+G I+R+A A   DG
Sbjct: 83  RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +   +   +    ++  G+  HI  I+            +       L   S K L 
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDATIPVYASLLDRSAKQLP 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y   
Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255


>gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 245

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTID 102
            E   ++G+ TV  A+++  + I ++   K+    L  + N       + +  VP + ++
Sbjct: 2   EETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLN 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+  K   HQG+    +P+   +L+           + L ++LD + D  N GAI+R+A 
Sbjct: 61  KLS-KNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  ++ S   +A   K+++GA+ +IP  +++++ DA+  + ++  + I  +  
Sbjct: 120 CCGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   +        IA+I+G E KG+     ++    A L M G I +LNVS A    LY 
Sbjct: 180 TDDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 AVRQRI 245


>gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 336

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 24/297 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAK-----LRRNHRDYKKMQSFNQKSRHT------SQPENLFLY 52
           I   K++ + +L +S+  K     L+++    K     +  S+         +  + +++
Sbjct: 41  IHSSKNQGVNNLDESYKKKDNFSYLKKSKPINKSNIKVSSNSQDIYQDLANKKNFDDWIW 100

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKE 108
           G H+V  AL N  R I ++  T    +   +   L         ++ V    + ++    
Sbjct: 101 GKHSVFEALIN-QRAINRIWCTSEIFSSEKFYILLKELKSKGVLIEEVSWNRLSQLT-FG 158

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+ A   + +L+          ++ +++ LD + DPHN+GAI+RSA AF C G
Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEH+P  R+ NL  AL+++   GF  IGLS D +  + 
Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +   + +I+GAE KG+   TQ+    +  + + G   +LN S AAA++L+   N
Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHLTN 335


>gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 248

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 9/253 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            ++++   QK R   +       G          P   + ++  + +    L      P 
Sbjct: 2   IREVRELLQKPRARQKAGLFVSEGERLCREI---PKDLVERVFLSDSYRGSLPAGF-RPK 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  VP + +  I   +    G+ +    L    L         ++L+ + DP N+G 
Sbjct: 58  DHTLIRVPDELMAHISDTKHSQ-GILVLVRMLPERVLSGD----FFLLLESLQDPGNLGT 112

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R A A   +GI  +   +   S  L +S  G+L  +P+  + +L + + ++   G + 
Sbjct: 113 IFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPFRIVPDLKETIAELKKKGVRC 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  +K           A ++G EG+GL P+  E A     + M G +++LN + AA
Sbjct: 173 FASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSEAADIRLRIPMKGGVESLNAAAAA 232

Query: 270 AVALYITQNHFAK 282
           A+  Y T     K
Sbjct: 233 AILSYETLRQREK 245


>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
 gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
          Length = 264

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 9/249 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +     + ++L+G+H V  AL NP R+  +L+ TKNA  +L     +      + +
Sbjct: 15  KERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLSSSI-ITSGIDAEII 73

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151
            P+  +  +  ++VHQG ALE  PL    +             L++LD V DPHN+GAIL
Sbjct: 74  DPRKFNPPIDPQSVHQGAALEVMPLDWGNMSTVCAPRNDKKARLVILDRVTDPHNVGAIL 133

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I T R S  E+  LAK+ASGALE  PY+R+ NL  +++ +   G+  +G
Sbjct: 134 RSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSIKSLQEMGYYVVG 193

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L   +K  ++      +N  +A++LGAEG GLR  T++T   +  +       +LNVSNA
Sbjct: 194 LDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDYAATFGSLNVSNA 253

Query: 269 AAVALYITQ 277
            AVALY T+
Sbjct: 254 TAVALYATK 262


>gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
          Length = 255

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +  + L   +                 V  +     
Sbjct: 23  YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVDLSGKNVVLINKAIA 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +   +   +                 LL   D++ DP N+G I+R+A A   DG
Sbjct: 83  RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +   +   +    ++  G+  HI  I+            +       L   S K L 
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLANVITDFQDAAIPVYASLLDRSAKQLP 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y   
Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255


>gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
 gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
          Length = 238

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V  AL     ++ ++L  +   A L  +           VP   +D ++ +  
Sbjct: 2   WIYGRNPVLEALKEG--RVRRVLVARGVEAWLLRELEKL-GAEYTLVPRIELDTLL-RST 57

Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQGLA E        L+         +   LL+ LD + DP N GA++RSA+A    G+
Sbjct: 58  HHQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHGV 117

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           ++ +R S   S +  K+++GA   +P +++ NL  AL+++   G    GL     K   +
Sbjct: 118 VSEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPRE 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +AL+LG+EG+G+R   +E+   +  + M    ++LN S A  +ALY   
Sbjct: 178 LDFQRPLALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALYAVA 232


>gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
 gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
          Length = 248

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243

Query: 280 FA 281
             
Sbjct: 244 RI 245


>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 311

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 144/274 (52%), Gaps = 12/274 (4%)

Query: 19  HYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           H A  R++  D   + +    K         + LYG+H V+AA  NP R+I +LL T + 
Sbjct: 37  HGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAAWTNPERRIHRLLVTDSG 96

Query: 78  LARLDWDANLPHPFPVKT-----VPPQTIDKIVGKEAVHQGLALETAPLLS------PTL 126
            A L+          ++           +D+++   AVHQG+ ++ +PL           
Sbjct: 97  RAALEPVIAEARARGLQRPEASPADRVELDRMLPPGAVHQGIVIDASPLPELGIEDLCNE 156

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            A   S +++ LD V DPHN+GAILRSA AF    ++ T+R++P  + VLAKSASGALE 
Sbjct: 157 LASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTERHAPETTGVLAKSASGALEA 216

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P +R++NL  AL  +   GF ++GL+      L +     K  L++GAEG GLR  T E
Sbjct: 217 VPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLTGKTVLVMGAEGSGLRRLTME 276

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++A L   G + +LNVSNAAAVALY      
Sbjct: 277 RCDAIARLPTGGPVGSLNVSNAAAVALYEVARLR 310


>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 257

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 107/274 (39%), Gaps = 23/274 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I   ++ ++ +       K R+ +R Y                    L G H V  A
Sbjct: 1   MDRILSNQNSRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + K   ++AT+  +A    D   PH  P   V  +    I G     QG+  E + 
Sbjct: 42  IKAKA-KFHAVMATEAQMAEHLNDV--PHGVPAFEVSEEVAKHIAG-TNTPQGIFAEISL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                     +    + LD++ DP N+G ++R+A A    G++     + + S  + ++ 
Sbjct: 98  PDKTFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+  +             +         +++ K       + + ALI+G EG+G+
Sbjct: 158 QGSQFHLEILNGDLHEWTDALTANGLPVYGSQLNEAAKSYRTIQPSTQFALIVGNEGQGM 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 218 AESLADKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1]
 gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC]
          Length = 265

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 80/261 (30%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +         +     L G   +  AL++      ++        +    
Sbjct: 6   KNNPKVKEAVALKHNRS--RKGPVFLLEGFREIQKALDSGYE-CERIFCGTRVSEKEQSF 62

Query: 85  ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            N     P++ V         +      +     +                     ++++
Sbjct: 63  LNAIQKLPIEKVYCLEETLSKLSYKEHHDNFIAVMKKRWWSREEFLAQKRNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ G +  +P    +      
Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLGTVFTLPIWSATLDQVLQ 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +     +K     E  N  + L+ G+E  GL     +   S   L M G 
Sbjct: 183 VILEEKWQAFVTS-PRAKTMYFCENYNQPLVLVFGSEKDGLTASWLKGNFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262


>gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
          Length = 329

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 21/294 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H AK        K+  S   + R   +  +  + G + V  AL   
Sbjct: 37  TPKAEDRVYH--KAHRAKQLAERSAAKR-GSVTDQVRGRVKLTDETVSGRNPVLEALRAG 93

Query: 65  ---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                    +    +   +      L    PV       +D++ G EAVHQG+ L+  P 
Sbjct: 94  IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152

Query: 122 LS-------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                               +R   LL+ LD + DP N+GAI+R+  AF  DG+I  +R 
Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S   +A   ++++GA   +P  +  NL   L  +H  G+  +GL       L       +
Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVCLPGLALATE 272

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + L++GAEGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326


>gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 322

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 22/264 (8%)

Query: 38  QKSRHTSQPE-----NLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLP 88
            + R   +          + G ++V  AL         L        +   +        
Sbjct: 59  NQPRRPQRSGTGPIKEDLVTGRNSVLEALR-GGVPAKTLFVASKIEVDDRVKDILQLCAE 117

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVRNSQLLMVL 138
              P        +D++   +A+HQG+ L+  P   P  D             +  LL+  
Sbjct: 118 RQVPTLEASRGELDRLSS-DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAA 176

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+GAI+RS  AF+ DG+I  +R S   +A   K++SGA   +P  + +NLT  
Sbjct: 177 DGITDPRNLGAIIRSVSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRT 236

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           LQ     G+  +GL       L Q     + + +++G+EGKGL     E   ++  + + 
Sbjct: 237 LQNCKKQGYFVVGLDGGGDMSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIE 296

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
             +++LN S A  + LY      A
Sbjct: 297 SAMESLNASMAVGITLYEIARRRA 320


>gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 4/233 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + GV+ V   L N  + I +L   K N   +L+    +       +     + I+   G 
Sbjct: 4   IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKIASERNIKIFY-TDKKIENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                               A     ++++LD + DP N GA++RSA  F   GII  +R
Sbjct: 63  AVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  + K+++GA+EH+  ++++N+++AL K+    +   G   +  K   +E    
Sbjct: 123 NAVRVNETVVKTSTGAIEHVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPS 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + AL+LG+EG G+R K +E    +  + M G I +LNVS A  + L      F
Sbjct: 183 RTALVLGSEGNGIRKKVKENCDVLIKIPMYGKINSLNVSVAGGIILSEIVKSF 235


>gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549]
          Length = 248

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
             
Sbjct: 244 RT 245


>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 260

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 8/260 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R +   K     +  +            G             ++  L  T++A+A
Sbjct: 3   EKITSRENAKIKYACRLSSSAAFRRSEGRFLAEGRKLCPEL--ARGAQLETLFYTESAMA 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +    A LP       V     DK+      HQG+          TLD V+     + L+
Sbjct: 61  KCPELAGLPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLDEVKAGGRYLALE 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA AF  DG+I +   +   +    +++ GA   IP I    + DA+
Sbjct: 117 RVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEAGAMPDAI 176

Query: 200 QKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++ + G   +  +    +P    Q      + +++G+EG+GL  +T    +S   + M 
Sbjct: 177 TQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAACSSTVRIPMT 236

Query: 258 GIIKALNVSNAAAVALYITQ 277
             +++LN   A ++ L+  +
Sbjct: 237 DRVESLNAGIAGSILLWHFR 256


>gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
 gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
          Length = 255

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 3/236 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +  + L   +                 V  +     
Sbjct: 23  YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAIA 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +   +   +                 LL   D++ DP N+G I+R+A A   DG
Sbjct: 83  RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +   +   +    ++  G+  HI  I+            +       L   S K L 
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASLLDRSAKQLP 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y   
Sbjct: 200 DFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255


>gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4]
 gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4]
          Length = 266

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 100/250 (40%), Gaps = 6/250 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                 +   +++    +       GV+ V++AL +    + +L  T+ A A        
Sbjct: 18  PRVVAARKLTRRA-EREKTGRFLAEGVNAVTSALAHG--TVHELFVTERAAAAHPSLVEA 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                  T   +     + +    QG+    + +  P    + +++L++VL  V +P N 
Sbjct: 75  APRVSPIT---ERAAAGLSETVTPQGIVAVCSLVDRPLETVLASARLVVVLVDVAEPGNA 131

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R A A   D ++         +    ++A+G+  H+P  R  N+   L  + + G 
Sbjct: 132 GTVIRVADAAGADAVVLAGDTVDPHNGKSVRAAAGSTFHVPLARARNIPAVLTALRAAGL 191

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +T+     +   LE     D +A I G E  GL      +      + + G  ++LN++ 
Sbjct: 192 RTLAAHGYASASLETVRFGDPVAWIFGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLAT 251

Query: 268 AAAVALYITQ 277
           AAAV +Y   
Sbjct: 252 AAAVCVYTAA 261


>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
 gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 7/261 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +R  K  +S  Q+ +         + GV  ++ AL+  +      +  +   + L  
Sbjct: 16  SSQNRWVKLARSL-QRRKARYTERAFLVEGVRLLTDALDAGAVPSVLFIDAEKEHSALTE 74

Query: 84  DA--NLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLD 139
            A         V  V    +  I   E      G+           + A   + L ++ D
Sbjct: 75  LATAAHARGARVIPVTSALLRSIADTETPQGVVGIVPFPELGERGDIGAGATAPLFLIAD 134

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G +LR+A+     G+  T   +   +  + ++  GA   +P   +     A 
Sbjct: 135 GIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPIAYLDWR--AP 192

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               +     I  + D++   +         +I+G+E +GL P  +E AT  A + + G 
Sbjct: 193 APHIAGIATRIAATGDAETVYDAIDWTAPACVIIGSEAEGLSPAAREFATGTARIPLAGG 252

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LN + A  V L+      
Sbjct: 253 LESLNAAMAGTVILFEAARQR 273


>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 480

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 23/281 (8%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------FLYGVHTVSAALNNPSRKIF 69
             +  R     ++      + R   +PE             ++G H+  AAL    R I 
Sbjct: 137 DRRGDRRPSFQRERSRLPFRDRTPRKPEGEAAAATPPADDLVWGRHSALAALEAG-RPIH 195

Query: 70  QLLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           ++  T    +   +             V+ V    + +I G  +VHQG+AL+TA   +  
Sbjct: 196 RIWCTPEMRSAAKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIALQTAAAETID 254

Query: 126 LDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+++           LL+ LD V DPHN+GA++RSA A    G++  +R S   +   AK
Sbjct: 255 LESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAK 314

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GALEH+P  R+ NL  +L+K+   G++ IGL+ +    L     +  + L+ G+E +
Sbjct: 315 VAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLAGEGDVTLPDVDLSGPLVLVTGSEDQ 374

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           GL   T+     +  + + G+  +LN S A A+ +Y     
Sbjct: 375 GLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCVYEVARR 415


>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
 gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
 gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1341]
 gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0630]
          Length = 258

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H +  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLIEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 254

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 10/240 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+  +  A+ + S   KI+     + +L                 VP + ++++  K 
Sbjct: 11  IFGLRAIIEAIESGSTLNKIYLQKELRGSLFYELNQLIKEKGITTSLVPIEKLNRLS-KN 69

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG   + +P+    L+             L ++LD ++D  N GAI+R+A     +G
Sbjct: 70  GNHQGAVAQISPVEFYDLEELIEKTLESNKVPLFLLLDQLSDVRNFGAIIRTAECTGVNG 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  S   +A   K+++GA   IP  ++ ++ DAL  + +   +T+  +  ++  L 
Sbjct: 130 IIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEIKTVAATEKTEDVLY 189

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               N  IA+++G+E +G+ P   +     A L + G I +LNVS A    LY T     
Sbjct: 190 DINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSVACGAFLYETIRQRI 249


>gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 234

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID   G 
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGI 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  ++++LD + DP N GAI+RSA  F  D I+  +R
Sbjct: 63  AVYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv]
 gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
 gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium
           tuberculosis H37Rv]
 gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
          Length = 260

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 16/269 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +  A   + HR                +       G + V+AAL      + ++  T+
Sbjct: 5   RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            A  R +      H   V  V  +    +         +A+   P          + QL+
Sbjct: 52  VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            V   + +P N G ++R A A     +I   R     +    ++++G++  IP +   ++
Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
             A+  + + G Q +  + D +  L+       +  A + G E  GL  +    A    H
Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G  ++LNV+ AAA+ LY +     +
Sbjct: 231 ILMSGGAESLNVAAAAAICLYESARALGR 259


>gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 234

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + I+   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIENSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +      ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E  ++
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida Fx1]
          Length = 248

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
             
Sbjct: 244 RT 245


>gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 274

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 8/263 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  +++ ++         +     + GV  ++ A+ +  +    L  T  AL+
Sbjct: 2   VLRVSGRNARFQQWEALLHNRTKRQRRGEFLVQGVRPIAMAVEHGWQIRELLYNTSVALS 61

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMV 137
               D           V  + + ++ G +A      L    L    L  +    + L +V
Sbjct: 62  GWARDLLEKVRAEKIAVSRELMHEL-GGKADDVPELLAVVALPEDDLCRIPTGPTMLTVV 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRI 192
            D    P NIG ++RSA AF   G+I T   +        ++++G+L       +P  + 
Sbjct: 121 FDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVRVPARQA 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                   +    G   +G        +          +++G E  GL    +E    + 
Sbjct: 181 VLSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSSGWREACDQVV 240

Query: 253 HLHMPGIIKALNVSNAAAVALYI 275
            + M G   +LN + AA V LY 
Sbjct: 241 RIPMSGAASSLNAATAATVVLYE 263


>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 234

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG   V  AL N       L + + ++ +            + ++    +DK+     
Sbjct: 3   YIYGRGPVIEALKNNKVDKIYLASHEGSIIK-IKAMAKEKKVLISSLSKDRLDKMA-PGK 60

Query: 110 VHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+    +             +  +    L++LD + DPHN+GAI RSA+ F+ DGII
Sbjct: 61  NHQGVVALVSGYEYKDFQELLDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  + K++ GA++++   +++NL+  ++K+   GF     +      ++  
Sbjct: 121 IPKHREALVNDTVYKTSQGAVDNVNICQVTNLSQTIEKLKKAGFWI-YAALLEGDNIKDV 179

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + K+A+I+G EGKG+     + +     +       +LN S AA + +Y    
Sbjct: 180 DFSGKVAIIIGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR 234


>gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 258

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      I +L+ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AIHRLIVSESATAHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  +    L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+A A     +IT+   +   S    ++  GA      + I       + + 
Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVNEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 336

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 19/284 (6%)

Query: 18  SHYAKLRRNHRDYKK------MQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN--PSRK 67
           +H  K+ R     K+             +   ++    +  + G ++V  AL    P   
Sbjct: 49  AHKNKVLRERAAAKRGTGHDAAPRGAYGASRRAKTGDESEIVTGRNSVLEALRARIPGTT 108

Query: 68  IFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           ++     + +   +           PV  +    +D++ G++AVHQG+AL+  P      
Sbjct: 109 LYIAARVELDDRVKEILSLATGRAIPVLEIMRPELDRLAGRDAVHQGVALKVPPYEYVHP 168

Query: 127 D-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                       + L + LD + DP N+GAI+RS  AF   G+I  +R S   +A   K+
Sbjct: 169 GELLDRTLRNGETPLFVALDGITDPRNLGAIIRSTAAFGGQGVIVPQRRSAGMTASAWKT 228

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGK 238
           ++GA    P    SNLT  L+     G   +GL      PL      +  + +++G+EGK
Sbjct: 229 SAGAAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPGLSFADRPVVIVVGSEGK 288

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+     ET  ++  + +    ++LN   AA+V LY      A+
Sbjct: 289 GISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRAQ 332


>gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
          Length = 234

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID   G 
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A +N  ++++LD + DP N GAI+RSA  F  D I+  +R
Sbjct: 63  AVYISNFDYYKDFDEAYEELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 234

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E  ++
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R]
 gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 271

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    + +   + G ++V AA+   +     L  T++A  R +     
Sbjct: 14  PRIVNAAKLH-RAAQRKKDKRFLVEGENSVEAAVATGAATD--LFVTESAAERFEEIVRT 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V T  +  +    +          AL    L S         +L+ V     +P 
Sbjct: 71  AGYMNVYTHAITDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R + A   D ++          A   +S++G+L HIP  R +N+ D L ++ S 
Sbjct: 131 NAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSK 190

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G Q +  S+D +  L+          A + G E  GL       A     + + G  ++L
Sbjct: 191 GLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESL 250

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ LY +  
Sbjct: 251 NLATAASICLYESSK 265


>gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 282

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    + +   + G ++V AA+   +     L  T++A  R +     
Sbjct: 25  PRIVNAAKLH-RAAQRKKDKRFLVEGENSVEAAVATGAATD--LFVTESAAERFEEIVRT 81

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V T  +  +    +          AL    L S         +L+ V     +P 
Sbjct: 82  AGYMNVYTHAITDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPG 141

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R + A   D ++          A   +S++G+L HIP  R +N+ D L ++ S 
Sbjct: 142 NAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSK 201

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G Q +  S+D +  L+          A + G E  GL       A     + + G  ++L
Sbjct: 202 GLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESL 261

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ LY +  
Sbjct: 262 NLATAASICLYESSK 276


>gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
 gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
          Length = 234

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID   G 
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  ++++LD + DP N GAI+RSA  F  D I+  +R
Sbjct: 63  AIYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KIVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228


>gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
 gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
          Length = 248

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243

Query: 280 FA 281
             
Sbjct: 244 RI 245


>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
 gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
          Length = 348

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 13/252 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95
            R      +  + G + V  AL         L        +                V  
Sbjct: 97  PRTRRSEADELVVGRNAVVEALRAG-VPASNLYVAGGLDFDERLADARRLAARAGIAVVD 155

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGA 149
           V    +D++ G  A HQGLAL   P      D +          L++ LD V DP N+GA
Sbjct: 156 VARPDLDRMCG-TAPHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDPRNLGA 214

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQ 208
           ++RSA AF   G++  +R +   +A   K+++GA   +P  R +NL    +    +  F 
Sbjct: 215 VVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAEAGLFV 274

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               +       E E+  D + L++G+EG+GL    ++       + M G +++LN   A
Sbjct: 275 VGLAADADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVA 334

Query: 269 AAVALYITQNHF 280
           A +AL       
Sbjct: 335 AGIALAEIARRR 346


>gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
 gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB056]
 gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB058]
 gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB059]
 gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
          Length = 249

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +        L       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPTLNEKDLDQLLTETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  ++  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 277

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 12/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                   +   ++S    +     + G   V  A+ +    + ++  T  A AR     
Sbjct: 10  RSPRVTAARRLAKRS-FRGKERRFLVEGPQAVREAMAH----LVEVYVTPEAAARHADIV 64

Query: 86  NLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   PV T   + + ++         + L                +L+ VL HV D
Sbjct: 65  AAARAAGAPVLTATDEVVAEMSDTVTPQGIVGLCRFLDTPFEEILRARPRLVAVLAHVRD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D ++ T       +    +++ G+L H+P      +  A+  + 
Sbjct: 125 PGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVERAVSGLR 184

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +      ++ L+ E    +     A I G E  GL   T+  A  +  + + G 
Sbjct: 185 EAGARVVAADGAGERDLDTELDEGVLGAPTAWIFGNEAWGLPEPTRALADEVVRVPIHGR 244

Query: 260 IKALNVSNAAAVALYITQN-HFA 281
            ++LN++ AAAV LY +     A
Sbjct: 245 AESLNLATAAAVCLYASARAQRA 267


>gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 274

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 11/260 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL++  + I  L+  K+             
Sbjct: 18  YARISEIQLLNRAEPEKGIFIAESPKVIERALDSGCQPISFLVEHKHVEGEAKELIRRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G +     L     P L   +D  +N++ + VL++V +P NIGA
Sbjct: 78  DIPVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-------M 202
           I RSA A   D ++ T   S        + + G +  IP+      T+   +       M
Sbjct: 138 IFRSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAM 197

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                                +  +K+A++LG EG GL  +T         + M   + +
Sbjct: 198 GFKTAAMALREDSFDIDDPHLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A+AVA +       K
Sbjct: 258 LNVAAASAVAFW----QLGK 273


>gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida 3523]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        +  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    A+        +     TL     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
             
Sbjct: 244 RT 245


>gi|319941637|ref|ZP_08015961.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804867|gb|EFW01721.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
          Length = 274

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 6/268 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
             H       +   K+ +    +++   +     L G+H +   L +P  KI  ++  + 
Sbjct: 4   SQHLFIESDANPRLKRWRRLALEAKAVRREGATVLEGIHLLQTVLEHPEVKINAVMLPEG 63

Query: 77  A----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
                   L   A       +  +  +  D I   E     +     P            
Sbjct: 64  RTTAEAKALAERAAQTLGTRLYVLSDRLYDAISPVENGVGVMCEIALPAAPAPEKWAAAD 123

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +  D V D  N+G ++R+A A     ++     +   +  + ++  GA   +     
Sbjct: 124 ALYL--DGVQDAGNVGTLIRTAAAAGVRVVVAGPGTAGLWTPRVLRAGMGAHFAVDLAEG 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            ++                    +            I  ++GAEG GL  K  E A    
Sbjct: 182 ISIEKFRADYRGRLLAADARGGVNLFEASDYTAAGPICWLMGAEGPGLSVKALELADERY 241

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + +   +++LNV  AAAV L+      
Sbjct: 242 WIPISRSVESLNVGAAAAVCLFDAARRR 269


>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 255

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI  +                         +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL        +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKAL--EILKDEIPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     +     +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  +  +    +T   Q   +          D  KPL +     +DK ALI+G EGK
Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 255

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 29/280 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI  +                         +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +   P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     +     +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  +  +    +T   Q   +          D  KPL +     +DK ALI+G EGK
Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 243

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 21/253 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +Q   QK ++ ++     + G  ++   L    R   +LL            A   
Sbjct: 6   QVKLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------ATAL 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +  P+  V  + + K+   +   +GLA+         L       +++ LD+V DP N+G
Sbjct: 57  NGQPITLVSKEELRKVSSLKNPDEGLAIFHQRQHKGIL----QEGVILALDNVQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R    F  + +I   +     +  + ++  G+L  +    +           +    
Sbjct: 113 TLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCAL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
            +       + L      +   LILG E  G+ P+ +  A  +  +   G     ++LNV
Sbjct: 168 PLYAMDLDGENLYTTEFPEDCVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNV 227

Query: 266 SNAAAVALYITQN 278
           + A A+ +   + 
Sbjct: 228 AMAGAIVVSQVRK 240


>gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
 gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
          Length = 234

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A ++  L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E  ++
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas]
 gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 252

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 130/238 (54%), Gaps = 9/238 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPFPVKTVPPQT 100
              +++YG H  +AAL N +RK  +LL T+N +   +               +K V P  
Sbjct: 3   KNKIWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNINLKQVNPNY 62

Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I+ ++   + HQG+AL+ + +        L+  + S  +++LD V D HN+G+I+RSAV 
Sbjct: 63  INSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVC 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D II     SPSE+  ++K++SGA++ IP + + N+ + ++ +   G+   G  +  
Sbjct: 123 FNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKE 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + L +   + K  +I G+E KG+R  T+E    +  + +   I +LNVSNAAAVALY
Sbjct: 183 GEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240


>gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 238

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 4/231 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V   LNN  + I +L   K     +              +     + ++   G 
Sbjct: 4   VIGVNPVLEVLNNREKTIEKLEVYKGVRGEILQKIQRLASERNVKIFY-TNKKVENSQGF 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                               A R+  +L++LD + DP N GA++RSA  F  DGI+  +R
Sbjct: 63  CIFLTDYDYYQDFDEFLERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++P I+++NL++A++K+    +   G + +++   ++E    
Sbjct: 123 NSVRINETVVKTSTGAIEYVPIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSCQEEQYPK 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K+ LILG EG GLR K +E    +  + M G I +LNVS A  + L     
Sbjct: 183 KVVLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILLSEIAK 233


>gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
 gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
 gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
          Length = 249

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP 67

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +                LL+ LD V DPHN+GA +R+A A     +
Sbjct: 68  -FHQGVVAAVRPHPTLNEKDLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPL 220
           I  +  S S +    K A+G  E + +I+++NL       K  +       +  ++  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 247

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S  I ++   K A+     +          PV  VP + +++   
Sbjct: 6   LIYGIHALNESLASHSD-IDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNRFT- 63

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+    L+              +++LD V D  N GAI R+      
Sbjct: 64  -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY     
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242

Query: 280 FA 281
             
Sbjct: 243 HN 244


>gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 246

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G   V  A+       KIF    TKNA  +  ++A      P   VP   ++K+V   
Sbjct: 7   IFGSKAVLEAILAGKTIDKIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLV--P 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   TL  +           L+++LD V D  N+GAI+R+AV      
Sbjct: 65  LNHQGIVALLSPVPLVTLSHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K+ S S  +   K+++GAL H+P  R +NL  ++  + + G Q I     ++  + 
Sbjct: 125 LVLPKQGSASLGSGAMKTSAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       A++LG+E KG++P+        A + M G I +LNVS AAA+ LY +     
Sbjct: 185 QVKLTVPTAILLGSEDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQRN 244


>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
 gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
 gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
          Length = 258

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 3/237 (1%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +     + G H V  A+   +   + L   +       W A       +  V  + ++
Sbjct: 24  REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVLN 82

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G+
Sbjct: 83  SLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGV 140

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +  + +S  G+  H+P ++                      +++     +
Sbjct: 141 ILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYE 200

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 201 QEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
          Length = 282

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 14/271 (5%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
                  RN+   K+  +  +  RH      +F+ GV  V  AL +  + +F+ +A    
Sbjct: 2   LTDTITSRNNPLIKRFLAARE-GRHRH---VIFIEGVRLVEEALRS--KIVFEAVAYTPR 55

Query: 78  LARL---DWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
           L                P +   +    +  I   E     + L   P  +        +
Sbjct: 56  LYETPRGAQLLAALQSQPCRGARLTEALMAYISDVETAPGVIVLGQRPSSTLPDLTHHPA 115

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ D +  P N+GA++R+A A    GI+ T            ++A+G+   +P I  
Sbjct: 116 PLFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPIIAG 175

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR---PKTQETAT 249
           S++ D LQK++  G + +        P E       + L LG+EG GLR      +    
Sbjct: 176 SSVADELQKLYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHGLRSLTDDFKHRLA 235

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G +++LNV+ A A+ LY  +   
Sbjct: 236 ARLVIPMEGQVESLNVAVAGAILLYEARRQR 266


>gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 267

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 7/268 (2%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I SL              +  +     ++R               +  AL+     + 
Sbjct: 4   ERITSLTHPGVE-------VFSALTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLS 56

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            +   ++ +       +     PV T     + ++ G       L            +A 
Sbjct: 57  MMCEERHIVGDAADIISRCGDIPVYTGERALLAQLTGYTLTRGVLCAMRRKPTRSVAEAC 116

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            ++  + V+D V D  NIGAI RSA A   D ++  K      +    + + G++  +P+
Sbjct: 117 ADATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPW 176

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                    L  +           +       +     ++A+++G EG GL  +    A 
Sbjct: 177 TWSEQPLAELSALGFRTAAMALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQVIAQAD 236

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  + M   + +LNV+ A+AVA +  +
Sbjct: 237 YVVRIPMAHGVDSLNVAAASAVAFWELR 264


>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 276

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 8/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82
            +   +++    +  R   +    F+ G+     A+ +    +  ++   A K    +L 
Sbjct: 11  ENPLIRRLAMLIRSPRRAVKENVFFVEGLRLAEMAVQSNWAILHAVVTEHAMKMERMQLL 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLD 139
                    P+ +V  +        ++    +          L   +       L + LD
Sbjct: 71  LTKLSARNIPIASVSERLFSACSETDSPQGIILLLQRLPCTPLEEMVQVTEGLPLYLALD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G ILR+A A    G+I  +  +    + + ++A G+L ++P++   +  D +
Sbjct: 131 RVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGVDEEDLV 190

Query: 200 QKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +                          +    ++LG E  G+  +    A    ++ M G
Sbjct: 191 RFAKENVLCFYAAACDTDGVTHFAAELSRPSLVVLGNEANGVSERLL-RAGQHLYVPMCG 249

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV+ AA   LY       
Sbjct: 250 RAESLNVAAAATAILYEAIRQRK 272


>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 235

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 9/237 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPV-KTVPPQTIDKI 104
              L GV  V+ AL + +     L A +                  PV     PQ I  +
Sbjct: 1   MFVLEGVRLVADALESGATLTLVLYAPEQLQQTPAGLDLLQRLQRLPVGYAATPQVIASV 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           L            L++V+D V DP N+G +LRSA A      + 
Sbjct: 61  ADTVHPQG-----VVALARWPQIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLC 115

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +       +  + +SA GA   +   +     +  +++             ++ P     
Sbjct: 116 SVGTVDVYAPKVVRSAMGAHIRLSIEQDVRWDEIGERLADVDHVYA-ADPHARMPYYAAD 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                AL++G E  GL    +  AT    + M G  ++LNV+ AA+V L+       
Sbjct: 175 WRQPSALLVGNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQRT 231


>gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
 gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
          Length = 335

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             + G ++V  AL      +  +        +   R          +P+  V    +D++
Sbjct: 91  EIVSGRNSVVEALRAGI-PVSTVYLAARLEADDRTREIVSTAAEAGYPLLEVSRTELDRL 149

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               +VHQG+A++  P      +             L++ LD V DP N+GA+LRSA AF
Sbjct: 150 TD-GSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTDPRNLGAVLRSAGAF 208

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  +R +   +A   K ++GA   +P  R++NL   LQ     G   +GL     
Sbjct: 209 GAHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYKEAGVFVVGLDGGGD 268

Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + + +     D + L++G+EGKGL    +E   ++A + +   +++LN   AA +ALY  
Sbjct: 269 QSVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEV 328

Query: 277 QNHFAK 282
                +
Sbjct: 329 ARRRGE 334


>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
 gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
          Length = 249

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTID 102
               ++GVH V+  + N  R++ QL    N            A   +   +  +  +T+D
Sbjct: 4   NLDIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTMD 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +  K+  HQG+A    P+    L             L + +D + DP N+G+I+RSA  
Sbjct: 64  ALT-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAAC 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II   R +   +  + K ASGA E +  + ++NL              I  +   
Sbjct: 123 LGFSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANL-ATALLDLKDEGFWIYGADMG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYI 275
            + + +   +    L++G+EG G+R KT E    +  +   PG + +LN +NAA++ ++ 
Sbjct: 182 GQSIVKTDYSFPAVLVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMFD 241

Query: 276 T 276
            
Sbjct: 242 M 242


>gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 5/236 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG   V  AL++P  ++ ++L  + A     +   DA       V+    Q +  + G 
Sbjct: 12  VYGRKPVLEALDDPRLEVDKVLMAEGARGPAAKEILDAASRRGVRVQRATAQRVKVLAGN 71

Query: 108 EAVHQGLALET--APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               QG+  +     +    L      + +++LD +  P N+G ILR+A A   +GI+  
Sbjct: 72  GRHDQGVLADVVAPRMAPLALALESRPRGVLLLDGITTPANVGMILRTATAAGVEGIVVP 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R   S   ++ K+++G     P +R     +A  ++ + G+    L + +K+ +     
Sbjct: 132 RRGVASIDPLVVKASAGVAFRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKRSVYAAEL 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ++ A +LG+E  G+    +E  T    + M   +++LNV++AAAV  +      +
Sbjct: 192 PERAAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRRS 247


>gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
 gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
          Length = 271

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 17/277 (6%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
             +K  H       +   +  +   +KS+   +     + G   +    ++   ++ QLL
Sbjct: 2   KHIKSPH-------NAIIRHAELLQRKSKARKKEGLFLIEGQREIM-LGDHGGFELQQLL 53

Query: 73  ATKNAL--ARLDWDANLPHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
              + L       D+++ H         V ++  +  +K+  +      +A   A     
Sbjct: 54  VCGSILLGTEDFQDSDVYHKININSTPEVISITQEVYEKLAYRTGTEGVIAFAKAKSQQL 113

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               +  + L+++ +    P N+GAILR+A A   D +I                +S   
Sbjct: 114 QDLKLSKNPLILIAESPEKPGNLGAILRTADAAKVDAVII-ANPVADLFNPNVVRSSVGC 172

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      ++ +  + S        +  S +  +        A+ LG E  GL  + 
Sbjct: 173 VFTVPTATGTTSEVVDFLKSKNINLYAATLQSSERYDTMDYTSGSAIALGTEATGLTQEM 232

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++ A     + M G I ++N+S +AA+ ++  +    
Sbjct: 233 RDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQRN 269


>gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 234

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID   G 
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKIDNSQGV 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                          +    A +   L+++LD + DP N GAI+RSA  F  D II  +R
Sbjct: 63  AVYISNYDYYKDFDEAYEELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPER 122

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++     +E   +
Sbjct: 123 NSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYAN 182

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 183 KVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
 gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
          Length = 255

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI  +                         +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +   P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     +     +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  +  +    +    Q   +          D  KPL +     +DK ALI+G EGK
Sbjct: 154 QGNLFQVNLVNEYLVKVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 214 GISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX2137]
 gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0043]
 gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1346]
          Length = 258

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 22/279 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++                          K ++  +     + G H V  A
Sbjct: 1   MKEIISTKNNQLKEW-------------------KKLHKKKYREELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +         LA+ T  
Sbjct: 42  VKANADVQWILFNQRGQQEWRTWLAEQETE-KLIFVSDEVLNSLSELPTSQGILAIVTLE 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  + +   LL+  D++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 101 TQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      +++     ++   +  ALILG EG G+
Sbjct: 159 QGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGV 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 219 SPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
 gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 13/269 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A+ R       +  +  Q+    +   N  + G      AL      I + L  +     
Sbjct: 37  AQQRMPQASRTQQTAAPQRRDVHAAEGNY-IEGRRAAFEALRTG-FPIKRALIAQGVENE 94

Query: 81  LDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
                 L         VK+VP   +D I    A HQG+ LE        L  +       
Sbjct: 95  PAIRDLLGGLGEAGVSVKSVPRTQLDAISSHGA-HQGIVLEVGKFPYADLSDIIAAAPAG 153

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +  L++VLDHV D  N GAI+RSA      G++   + S   +    K+++GA+ H+P  
Sbjct: 154 SPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHLPIA 213

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           ++ N+  AL+ + S GF   G +  ++          ++AL++G+EG G+     +T   
Sbjct: 214 QVPNIARALEDLKSAGFWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVLDTCDF 273

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L   G  ++LNV+ AA    +     
Sbjct: 274 TTKLPQRGETESLNVAQAATALCFEWMRR 302


>gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14]
          Length = 246

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H +  A+   +  I  +   +    ++   AN      V  V P+ + ++
Sbjct: 24  RTSSYLIEGWHLLEEAMEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQEL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  + A       + +    L++  + V DP N+G ++R+A A   DG+  
Sbjct: 77  AD-SKTPQGVVAQLALPSQRLPETLDGKFLVL--EDVQDPGNVGTMIRTADAAGFDGVFL 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           + + +   +  + +S  G+  H+P  R+   +       +         S      ++  
Sbjct: 134 SDKSADIYNMKVLRSMQGSHFHLPVYRMPISSILTALKSNQIQILATTLSSQSVDYKEIT 193

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   AL++G EG+G+     + A  + H+ MPG  ++LNV+ AA + L+
Sbjct: 194 PHSSFALVMGNEGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243


>gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha
           proteobacterium HOT2C01]
          Length = 257

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 6/252 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M   ++K     Q  + ++YG H V  AL N +R  +++  T  A  +L  +  L +   
Sbjct: 1   MSKRSKKLPKKRQNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINV 60

Query: 93  VKTV-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
           +        ID ++   + HQG+ +    L +P L            ++ +LD ++DP N
Sbjct: 61  ISIKKTRDEIDLLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA+AF+ DGII T   S +E++ LAK+AS AL+ +P+I+I N++  ++ +   G
Sbjct: 121 VGAIFRSALAFNIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDSG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   GL   +++ + +     KI  ILG+E KG+R  T         + M   +++LNVS
Sbjct: 181 YWIYGLDMKAERSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNVS 240

Query: 267 NAAAVALYITQN 278
           N AA+ ++   N
Sbjct: 241 NTAAIIMFYVSN 252


>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 261

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 94/258 (36%), Gaps = 6/258 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +   H D  +  +  +  R   +     + G   V+  LN+P R    L    +      
Sbjct: 3   IESAHNDRVRAWARLKTRRGRERLGLFLVEGERLVAELLNSPLRLEALLWNVASDEPPDA 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +         + PQ    +   E     +A+   P   P     R    ++VLD + 
Sbjct: 63  LWRHPKADGRRYELSPQAFAAVADTETPQGLMAVAAIPRAEP-----RYGPRVLVLDAIQ 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G ++RSA AF    I+     +   +  + +++ G L  +  I            
Sbjct: 118 DPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVRASMGGLFRVHAIAGDAEAYLRAWR 177

Query: 203 HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                   +  ++D+ +  ++     ++A+++G E +G+    ++ A     + M G  +
Sbjct: 178 DRHPDGVIVATAADASERCDEAPMAGEVAVVIGNEARGVSDAVRQLAQRCVAIPMAGKAE 237

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN + A  + LY     
Sbjct: 238 SLNAAMAGTILLYEAYRQ 255


>gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 247

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S  I ++   K A+     +          PV  VP + +++   
Sbjct: 6   LIYGIHALNESLASHSD-IDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNRFT- 63

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+    L+              +++LD V D  N GAI R+      
Sbjct: 64  -RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  I   R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY     
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242

Query: 280 FA 281
             
Sbjct: 243 HN 244


>gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L    P K V  
Sbjct: 2   QNKKLDSKNYYYIYGKHPVFSALNNPKRQIEDILCTQ---MIFDANKKLISSKPYKIVNN 58

Query: 99  QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +                   ++       + +LD + DP NIGAI+RSA A
Sbjct: 59  DVLSKLLENQTHQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D II     SP+E+  +AK+A G LE I  I+++NL   +  +   GF  IGL+ ++
Sbjct: 119 FNIDAIILPLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKIALI G+E KG+R   QE    +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFH 236


>gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 272

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  ALN   + I  L+  K+               PV T   + +
Sbjct: 28  YEPEPGIFIAESPKVIERALNAGYQPISFLVEHKDLEGEAQEILKQYPDVPVYTAEYELL 87

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G       L       L    +  RN+  + VL++V +P NIGAI RSA A   D 
Sbjct: 88  VKLTGFALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAIFRSAAALHMDA 147

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ T   S       A+ + G +  IP+      T   Q            ++      +
Sbjct: 148 VLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLGFKTAAMALRDD 207

Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +DK       +A+ILG EG GL  +T         + M   + +LNV+ A+AVA +
Sbjct: 208 SVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFW 267

Query: 275 IT 276
             
Sbjct: 268 EL 269


>gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 258

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +++ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  +    L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+A A     +IT+   +   S    ++  GA      + I       + + 
Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAH---FSMSIYEHIAVDEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 255

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 5/237 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +  +  + G H    A+    +  + LL T+ AL + + D ++      V  +    
Sbjct: 23  YRDEENSYLIEGFHLFDEAIKAGKKYQY-LLGTEEALDKAESDYDVDLSGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ +   +   +    ++  G+  HI  I+                    +     K L
Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDVAIPVYASMLDKKAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   K  ++ALI+G E  G+            ++ + G  ++LN + AA + +Y   
Sbjct: 199 QDFAKVPQLALIIGNEAHGVSSTIASLCDEKLYIPIKGKAESLNAAVAAGIMIYHFA 255


>gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
 gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
          Length = 258

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A    + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQMP-AVHRLIVSESATVHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  + +  L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISSDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+A A     +IT+   +   S    ++  GA      + I       + + 
Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVNEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 269

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    N ++    +       G ++V AA+   +     L  T+ A  R       
Sbjct: 14  PRVVNAAKLN-RAAGRKKAGRFLAEGENSVEAAVATGAATD--LFVTEAAADRFYDVVTT 70

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPH 145
                V T            + VH          ++ TL +      +L+ V    NDP 
Sbjct: 71  AAYMDVFTHAITDKAAQSLTDTVHTTGVFAVCKPVTWTLGSVLTGRPKLVAVCVGTNDPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R   A   D +I        ES  + +S++G+L H+P  R  ++  A+ ++ + 
Sbjct: 131 NAGTIIRLVDALGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARERDVNGAIGQLRAA 190

Query: 206 GFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G +     +  +          +   A + G E  GL       A     + + G  ++L
Sbjct: 191 GLKLAATTMGGEVSLDDPGNALDQPTAWLFGNEAHGLPDDVLAAADYRVSIPIKGSAESL 250

Query: 264 NVSNAAAVALYITQN 278
           N+S AA++ L+ +  
Sbjct: 251 NLSTAASICLWESAK 265


>gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1]
 gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1]
          Length = 255

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 3/236 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +  + L   +                 V  +     
Sbjct: 23  YRDDEGLYLIEGFHLFEEALKAGKKYQYILGTKEALDQADSNYEVDLSGKNVLLINKAIA 82

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +   +   +                 LL   D++ DP N+G I+R+A A   DG
Sbjct: 83  RHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I +   +   +    ++  G+  HI  I+            +       +   S K L 
Sbjct: 140 VILSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQAAAIPVYASMLDRSAKQLP 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              K  ++ALI+G E  G+ P     A    ++ + G  ++LN + AA + +Y   
Sbjct: 200 DFEKVPQLALIIGNEAHGVSPTIASLADEKLYIPIKGQAESLNAAVAAGIMIYHFA 255


>gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 246

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +++    I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSSGEELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L+ V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  REEIPAELSGRY---LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R+           S         S +     + +  +   L++G EG+G+
Sbjct: 150 QGSHFHLPVYRMDTSDFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 262

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 100/260 (38%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81
            R++  YK+++     S+   +     L GVH   A L +       +++    + +   
Sbjct: 6   SRDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATINQEVV 65

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                         V P  + + + +     GL           +  V  +   ++LD++
Sbjct: 66  PLLLQCEAGRTQCIVLPDALYQAISQVEHGVGLMFVVET--PQLVMPVALAGSAVLLDNL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G+ILRSA A   + +  +   + + S  + ++  GA   +      +L    + 
Sbjct: 124 QDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGAHFLLKIFENVDL---AEV 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +     +  SS   + +        +A + G EG+G+  +    AT    +   G ++
Sbjct: 181 VRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIGAME 240

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+  AAV  +      +
Sbjct: 241 SLNVAACAAVCFFEQVRQRS 260


>gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ +   +YGVH V+   L N   K++     +        D        +    
Sbjct: 2   KAKEINETK-DIVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG  L  +      LD         ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                    +    + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTGTPSYKWNT-SGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 AL 273
            +
Sbjct: 239 LM 240


>gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 9/257 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     +S+H  +         + +  AL    R        +  +  +       
Sbjct: 16  DYTNLTDIVLRSKHEPEKGLFIAESSNVIRRALAAGLRP-RSFFMAEKWVESMADVVEQW 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVN 142
              PV    P+ ++ I G       LA    P+     +          ++ + + + V 
Sbjct: 75  PDVPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGGEGARRVAIFEDVV 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GA  RSA A   D ++ T R S        + + G +  +P+ RI   +   +  
Sbjct: 135 DHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIPWPSGIGELQ 194

Query: 203 HSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +         SD         E KN+K A I G EG GL  +T E   S+  + M G +
Sbjct: 195 AAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPMAGGV 254

Query: 261 KALNVSNAAAVALYITQ 277
            +LNV+ +AAV  Y T+
Sbjct: 255 DSLNVAASAAVVFYATR 271


>gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 266

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 10/263 (3%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++   +  K    +      L G   VS AL      + +L AT  AL R   
Sbjct: 3   DNPRSPRVRGVAKLAKRDARADTGLFLLEGPQAVSEALAFRPDLVLELFATPTALDRYPD 62

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            A         V+ V    I  +         + +      S       + +L+ +L+ V
Sbjct: 63  LARAVREAGVEVEFVTEDVIASMADTVTPQGVVGVCRQFPTSLKQILGDDPRLIAILEEV 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G I+R+A A   D +I T R     +  + ++ +G+L H+P   +  L   L++
Sbjct: 123 RDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLER 182

Query: 202 MHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + G Q +                      A + G E +GL+ +    A     + + G
Sbjct: 183 VKAAGLQVLAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIYG 242

Query: 259 IIKALNVSNAAAVALYI---TQN 278
             +++N++ AA+V LY     Q 
Sbjct: 243 QAESMNLATAASVCLYESAFAQR 265


>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 103/263 (39%), Gaps = 10/263 (3%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    ++++  +  K    S+     L G   V+ AL   S  + +L AT  AL R   
Sbjct: 12  DNPRSPRVRAVAKLTKRTARSETGLFLLEGPQAVAEALAFRSELLVELYATPTALERHQD 71

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            A         V+ V  Q +  I         +A+      S       +  L+ +L+ V
Sbjct: 72  IAQAAAAAGTQVEFVTEQVLGTIADTVTPQGFVAVARQFPTSVREIFAGSPALVAILEEV 131

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G I+R+A +   D ++ T R     +  + +S +G+L HIP    ++L + +  
Sbjct: 132 RDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVAVGADLPEVVSC 191

Query: 202 MHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             + G + +      +               A + G E +GL  +          + + G
Sbjct: 192 ARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLGLVDRAVAVPIYG 251

Query: 259 IIKALNVSNAAAVALYI---TQN 278
             +++N++ AA+V LY     Q 
Sbjct: 252 RAESMNLATAASVCLYESAFAQR 274


>gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 255

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 15/249 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----KNALARLDWDANLPHPFPVKTVPP 98
            Q    F+ G H V AAL + S  I +L           +              +  VP 
Sbjct: 4   DQENEEFVMGRHPVVAALKSDS-PINKLFIQTGIKKDENIISEILKLARKKRLVISEVPK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAIL 151
           Q +D++      HQG+ L  A     T+D               ++LD++ DPHN+G+I+
Sbjct: 63  QKLDRLS-VGQNHQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLGSII 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++ S G    G
Sbjct: 122 RTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMWVFG 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +       + K   +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V
Sbjct: 182 TDIEGTDYRRWDAK-GSVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASV 240

Query: 272 ALYITQNHF 280
            +Y   N  
Sbjct: 241 LIYQGFNSR 249


>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
 gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
          Length = 278

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 7/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDW 83
           +   K ++S   K ++  +     + G+  V   + +     + +          A    
Sbjct: 11  NSIIKYVKSLQLK-KNRMKHMQFTVEGLRIVEECVKHNGDIAYIIYSEEIYSTQGAEKLL 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D      + +  V  Q   KI   E     +         L             ++LD +
Sbjct: 70  DKIALAGYTLYEVSSQLFSKISTTENPQGIMAVVHMKNRSLEEIKSQKGKELFFVILDRI 129

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A + + D +I TK      ++   ++  GA+ H   I   +    L  
Sbjct: 130 QDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTLRATMGAIFH-MPIIQCDDDRWLDD 188

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +     + I    D+ K       N  I +I+G E  G+             + + G I+
Sbjct: 189 LKENEVKLIAADLDTDKTYIDIDYNTSIGIIIGNEANGISEALLSKVDQRVIIPILGKIE 248

Query: 262 ALNVSNAAAVALYITQ 277
           +LN S AA++ +Y   
Sbjct: 249 SLNASVAASILIYKAA 264


>gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 248

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100
            + +  F+ G H   AAL      I ++   +   A    +           V  VP   
Sbjct: 2   KEEQKNFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +V  +  HQG+ +  A     T+D               ++LD + DPHN+G+I+R+
Sbjct: 62  LDNLVNGQ-NHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++   G    G  
Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +   K    AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +
Sbjct: 181 MKGTDFRKWSAK-GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 246

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +                       +K R   +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKL-------------------KKKRERDKTGQALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +       +   D +         +  +  + + G     QG       
Sbjct: 42  YQSNLTIKQLFIIEPERTEQALIDYSEET----FQINMKVAEALSGTI-TPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A +    ++++D + DP N+G ++RSA A   D I+  K  + +    + +++
Sbjct: 97  PNYDVTHAKQ----VLLIDRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +         Q         +  +   K    QE      AL+LG EG G+
Sbjct: 153 QGSVFHIPVVTADLQGFIKQFEGPVFGTALENAVSYKNLEPQETF----ALLLGNEGDGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NNALLEHTTKNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 328

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 20/294 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    ++  K     R         Q      +  +  + G + V  AL   
Sbjct: 35  TPKAEDRVYH--KAYKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTE 92

Query: 65  SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  + ++   +   R           P+  +P   +D++    +VHQG+A++  P 
Sbjct: 93  IPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPY 151

Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             P      LD +            L + LD + DP N+GAI+RS  AFS DG+I  +R 
Sbjct: 152 KYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S + +A   K+++GA   IP    +NLT  +Q+    G   IGL       L      N+
Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANE 271

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + +++G+EGKGL     E    +  + +   +++LN + A  + LY      A
Sbjct: 272 PLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325


>gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri]
          Length = 244

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 7/239 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            E +++YG++ V  +L NP+ KI +L    +                 V       +  +
Sbjct: 2   QEYIYIYGINPVVESLLNPAVKINKLYLLPQGKNNDYYLKLAKSRQLKVVFCSAVEMTTL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           V        +     P                   L+VLD ++DPHN GAILR+   F+ 
Sbjct: 62  VQTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218
           DG+I   +     +A +AK+++GA  ++P  R++NLT+A++       +      +   +
Sbjct: 122 DGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKAQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +   +  I LI+G EG G+  K  + A    ++   G + +LNVS A+A+ +Y  +
Sbjct: 182 NVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIYQIK 240


>gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp.
           Re1]
          Length = 250

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G ++V  AL    R I ++   K       R   +       P+  +       +   
Sbjct: 6   IEGRNSVWEALQAG-RPINKIYIKKGEYHGLIRDIIEKARNTGVPISEIDEAAFLSMAKT 64

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+  + A     +++ +            +++L+ + DP N+G+I+R+A      
Sbjct: 65  AG-HQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDPQNLGSIIRTADGMGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  +   +  +AK +SGA+E++   R++N+   + ++   G   IG  ++ K   
Sbjct: 124 GIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKKEGLWIIGADAEGKNYF 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      IAL++G E KGL    ++    +  + + G I +LN + AA++  Y      
Sbjct: 184 -EVDLTGSIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQR 242

Query: 281 A 281
            
Sbjct: 243 I 243


>gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 255

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +     + G H    A+    +  + L  T+ AL +++ D ++      V  +    
Sbjct: 23  YRDEENRYLIEGFHLFEEAVKAGKKYQYVL-GTEEALDQVNEDYDIDLDGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPKEFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ +   +   +    ++  G+  HI  I+            S       +   S K L
Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDSAIPVYASMLDKSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y  
Sbjct: 199 QDFEKVPQLALIIGNEAHGVSETIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254


>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
 gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
          Length = 256

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 100/265 (37%), Gaps = 16/265 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +  A   + HR                +       G + V+AAL      + ++  T+
Sbjct: 5   RSARVATAVKLHRHV-----------GRRRAGRFLAEGPNLVAAALARG--LVREVFVTE 51

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            A  R +      H   V  V  +    +         +A+   P          + QL+
Sbjct: 52  VAARRHELLLA-AHEASVHLVTERAAKALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLI 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            V   + +P N G ++R A A     +I   R     +    ++++G++  IP +   ++
Sbjct: 111 AVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
             A+  + + G Q +  + D +  L+       +  A + G E  GL  +    A    H
Sbjct: 171 GAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADHRVH 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M G  ++LNV+ AAA+ LY +  
Sbjct: 231 ILMSGGAESLNVAAAAAICLYESAR 255


>gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
          Length = 266

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 7/257 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
              N+  +K   S N K +   +     + G   V  A    +  I  +  + +   + D
Sbjct: 8   FSHNNAMFKLALSLN-KQKFRKKHSLFLIEGTRAVLQA-KENNITIKYIFVSDDFRKKRD 65

Query: 83  W---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
               + N         +      K+    A    + +   P         +    +++LD
Sbjct: 66  DVWNEINCSMITEKYILDDNLFSKLSDTVASQGVIGMCEIPKYDAKSILSKEKSFILLLD 125

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N G I+R+++A+  D I  TK    S S  + +++ G    +    I       
Sbjct: 126 QIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGN--LCLPLIEAEDGID 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S+            K+ALILG EG G+      T+     + +   
Sbjct: 184 YFKKFRYTVYSASLSEKSVSYRDVNFESKVALILGNEGNGISADILNTSDYQIIIPIKEG 243

Query: 260 IKALNVSNAAAVALYIT 276
           +++LNV  AA + +   
Sbjct: 244 MESLNVGVAAGILINEI 260


>gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
 gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 258

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATAHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  +    L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTIGGDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+A A     +IT+   +   S    ++  GA      + I       + + 
Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SMSIYEHIAVDEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 271

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ 
Sbjct: 33  DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 91

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +          A+          D     +L ++   V DP N G ++R A AF  D +I
Sbjct: 92  LSDTVTSQGIFAVCRQVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 149

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+      +    +S+ G++ H+P +    L DA++  H      +             
Sbjct: 150 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 209

Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
                   IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +  
Sbjct: 210 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 269

Query: 280 FA 281
            A
Sbjct: 270 RA 271


>gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA2]
 gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL025PA1]
 gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA2]
 gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL036PA2]
 gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA2]
 gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL086PA1]
 gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL050PA1]
 gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL001PA1]
 gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL027PA1]
 gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL002PA2]
 gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL082PA1]
 gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL045PA1]
 gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA1]
 gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA2]
 gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA3]
 gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL053PA2]
 gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA1]
 gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL103PA1]
 gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL043PA2]
 gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL092PA1]
 gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA3]
 gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL083PA2]
 gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA1]
 gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL099PA1]
 gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266]
          Length = 273

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ 
Sbjct: 35  DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 93

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +          A+          D     +L ++   V DP N G ++R A AF  D +I
Sbjct: 94  LSDTVTSQGIFAVCRQVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 151

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+      +    +S+ G++ H+P +    L DA++  H      +             
Sbjct: 152 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 211

Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
                   IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +  
Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 271

Query: 280 FA 281
            A
Sbjct: 272 RA 273


>gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 244

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G   +  A+       K+F      N+L          +      VP + ++K+   +
Sbjct: 7   IHGTRAIIEAIEAGKEVDKVFLQKGLHNSLLSELNTLIKKNGIQTSFVPIEKLNKLT--Q 64

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG     +P+     +           + L ++LD ++D  N GAI+R+A      G
Sbjct: 65  LNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFGAIIRTAECTGAHG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K+     + V  K+++GA   +P  ++ ++ DA+  +   G Q +  +  +   L 
Sbjct: 125 VIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQVVAATEKTDNTLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+++G E  G+ P   +     A L + G I +LNVS A    LY      
Sbjct: 185 DVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQR 243


>gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 415

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 89/253 (35%), Gaps = 5/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
             +K++ +     +   +       GVH V   + +    +  +   +        +A  
Sbjct: 160 PWFKRLIACTT-EKGREREGKFLGEGVHVVEELVKHHRELVISVYVVEGFENEELIEAIN 218

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                + T+    + ++         +A        P  +  R+   L+  D V DP N+
Sbjct: 219 EAEITLHTLTEDQMKRLSSTMTTQGIIAYCNIASKKPVYETSRSVLTLV--DAVQDPGNL 276

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSW 205
           G + R+++ F+  G+I  +      +  + + +SG    +P+    +        +   +
Sbjct: 277 GTLFRTSLGFNSSGMILGRGTVSPFNPKVVRGSSGTFLRVPFEFDVDLVDQINFLRSKGY 336

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L +          K  K+A ++G EG G  P   E A     + M   +++LNV
Sbjct: 337 TIIATDLHAKQSLREIPAHKLRKMAFLVGNEGAGTNPYFIELADETVKIPMSSELESLNV 396

Query: 266 SNAAAVALYITQN 278
           + A  +  Y    
Sbjct: 397 AVAHGILSYEAAQ 409


>gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 255

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 44  SQPENLFLYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQ 99
            Q    F+ G H V AAL +  P  K+F    +     +              +  VP Q
Sbjct: 4   DQENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEVPKQ 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+ L  A     T+D               ++LD++ DPHN+G+I+R
Sbjct: 64  KLDRLSASQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G    G 
Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       +     +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V 
Sbjct: 183 DIEGTDYRRWD-ARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241

Query: 273 LYITQNHF 280
           +Y   N  
Sbjct: 242 IYQGFNSR 249


>gi|257455361|ref|ZP_05620596.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
 gi|257447323|gb|EEV22331.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
          Length = 258

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            +++   K   +   +SR   +     + G H + A LN        +++        ++
Sbjct: 5   SKDNPTIKTTHALLTQSRQRKKLGKTVIEGTHLLEAYLNAGLTPETVIVSESGLHNDEIN 64

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 +     TV      +I     + + L +     +         +   ++++ V 
Sbjct: 65  ALLGRLNQVKTLTVSDNLYKEI---RTLGESLPIMAMIDMPHLDFNQPITSDCLIINGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G + R+A A     I+ T   + + S    ++  GA   +            + +
Sbjct: 122 DNGNLGTLFRTASAVGIKTIVCTMGTASAWSPKTLRAGMGANFSLTIFEGI---SVDEIL 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS +   + Q      +ALI+G EG+G+  +    + +   L  P   ++
Sbjct: 179 MKVKVPMFATSSHTDHIIYQTDLRQPLALIMGHEGQGVDERLLSQS-APIALPQPNGQES 237

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++ LY      
Sbjct: 238 LNVAIAGSLCLYEMLRQR 255


>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 107/280 (38%), Gaps = 29/280 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI  +                         +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +   P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     +     +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  +  +    +    Q   +          D  K L +     +DK ALI+G EGK
Sbjct: 154 QGNLFQVNLVNEYLVKVINQLHDNNYIIIGTSLHDDSKALSKVKFDSDDKYALIIGNEGK 213

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 214 GISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08]
          Length = 271

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +     + G   V  AL  P  K+  L  +  +      +A       +  +  + ++ 
Sbjct: 33  DESGLFLVEGSQAVREALAWPG-KVNLLATSDPSRDAEHIEAAEHRGVRIAVLTDEDVNT 91

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +          A+          D   + +L ++   V DP N G ++R A AF  D +I
Sbjct: 92  LSDTVTSQGVFAVCRQVTRHKLPD--EDVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 149

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+      +    +S+ G++ H+P I    L DA++  H      +             
Sbjct: 150 LTRGSVDPHNPKTVRSSVGSIFHLPVIVGVELADAVEWAHQREMSVLAADGGGHSLDAVA 209

Query: 224 I---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
                   IA ++G E  GL    +  A  +  + M G +++LN+S AAAV LY T +  
Sbjct: 210 RSGRLKRPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLYATASEQ 269

Query: 280 FA 281
            A
Sbjct: 270 RA 271


>gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+     +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYTPLSLLMERKQITGPAADILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   +T+  + G E     L     PL     +  RN++ + VL+ + D  N+GA
Sbjct: 78  DAPVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I RSA A + D ++ T            + + G +  +P+ +I        +        
Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHS 197

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                                     K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+AVA +   N 
Sbjct: 258 SLNVAAASAVAFWQLGNR 275


>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 100/273 (36%), Gaps = 25/273 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+       + +      L L G+  +       S  I  LL    A   +  +  
Sbjct: 59  NPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLGSVAIDCLLLLDGA--EVPDELR 116

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------AVRNSQL 134
                 V  V    + KI G ++V    A+    +     D            + ++ + 
Sbjct: 117 ELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCDLGDDEGGAGLDASFQSPKR 176

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLPIVSGNW 236

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKT 244
                           G    S     +             ++ + L+LG+EG GL  +T
Sbjct: 237 CDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCLVLGSEGNGLSEET 296

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    +  + M GI ++LNVS A  + L++ Q
Sbjct: 297 VQACD-LVSIPMEGIFESLNVSVAGGIFLFMLQ 328


>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 243

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 17/252 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+   + +K ++    +   + G H +  A       I  +L  +      +    
Sbjct: 8   NTKIKQWAKYKEK-KYRDADQKFLIEGEHLLQEAHTAG--LIECILVEQGKNIPYEQY-- 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV  V  + + K+    +           +          S  +++LD V DP N
Sbjct: 63  -----PVYYVTREILKKLTDSVS-----GSWVMAVCHFPEQQALTSDKIIILDGVQDPGN 112

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ILR+A++FS   I+ +K      +  + +S  GAL H+  IR   LT   +      
Sbjct: 113 LGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIRTELLTAIEELKEKGY 172

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                       PL Q     + ALI+G EGKG+R +         ++ M    ++LNV+
Sbjct: 173 KIYGTS-LHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEM-DTFESLNVA 230

Query: 267 NAAAVALYITQN 278
            AAA+ +Y  +N
Sbjct: 231 VAAAICMYTFKN 242


>gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 275

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 10/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++  + +S   ++     + G  +V   +   +  +  L  + + + R     +  
Sbjct: 11  RVKMVRRLSGRSS-RTKHGQFLVEGPQSVRELVACRAELVRDLYVSSDRVDRYRDIYDEA 69

Query: 89  HPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           H   +      P+ +  +         +A      LS     +  + L+ VL  V DP N
Sbjct: 70  HRQSLYLHTTTPEVLSAMSEDAQGIVAVARTLDTRLSSLGPVLSKACLVAVLTDVRDPGN 129

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ++R+A A   D +I         +  + +S++G+L H+P I  ++L D    +   G
Sbjct: 130 AGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNASLVDVHGALKMAG 189

Query: 207 FQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               G +  +   L+  ++           A + G E +GL  + Q    S+  + M G 
Sbjct: 190 IPLFGTTPYADLTLDDLVEPQGPTSVGAPHAWVFGNEAQGLSVEDQSMCDSLVRIPMYGR 249

Query: 260 IKALNVSNAAAVALYITQN 278
            ++LN++ AA + LY +  
Sbjct: 250 AESLNLAMAATICLYTSAR 268


>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
 gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
          Length = 258

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVEIYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
 gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 44  SQPENLFLYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQ 99
            Q    F+ G H V AAL +  P  K+F    +     +              +  VP Q
Sbjct: 4   DQENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEVPKQ 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+ L  A     T+D               ++LD++ DPHN+G+I+R
Sbjct: 64  KLDRLSAGQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G    G 
Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       +     +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V 
Sbjct: 183 DIEGTDYRRWD-ARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241

Query: 273 LYITQNHF 280
           +Y   N  
Sbjct: 242 IYQGFNSR 249


>gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061]
 gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061]
          Length = 247

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 31/266 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+  I   K  H                     +  ++     + G+H V  A
Sbjct: 1   MKYIESAKNTNIKQWKKLHTK-------------------KERTKTGLFLVEGIHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + + K   + +     + +D D        +  +  +    +   E      A+    
Sbjct: 42  LKSGAVKELMVTSPDKLPSHIDPD------IELYELSEEAFSAMTETETPQHIAAVCA-- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +   +  + L++LD V DP N+G ++R+A A   D +I       + +    +SA
Sbjct: 94  ---VPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSA 150

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++ +     +      G    G + ++ K           ALI+G EG G+
Sbjct: 151 QGSHFHLPILKQTLQ-QTIPVCKEQGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266
            P+  +      ++ M G  ++LNV+
Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLNVA 235


>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 259

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 8/260 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R +   K                     G             ++  L  T++AL 
Sbjct: 2   EKITSRENAKVKYACRLASSGAFRRAEGRFLAEGRKLCPELCR--GAELETLFCTESALE 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +    + LP       V     DK+      HQG+          TL+ V+     + L+
Sbjct: 60  KCPELSELPG--EHYLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVKTGGRYLALE 115

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   IP I    + +A+
Sbjct: 116 RVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPVIEAGKMPEAI 175

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             +   G   +  +    +PL        D + +++G+EG+GL  +T    T    + M 
Sbjct: 176 ALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAACTGTVRIPMT 235

Query: 258 GIIKALNVSNAAAVALYITQ 277
             +++LN   A ++ L+  +
Sbjct: 236 DRVESLNAGIAGSILLWHFR 255


>gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0017]
          Length = 258

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 22/279 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ ++                          K ++  +     + G H V  A
Sbjct: 1   MKEIISTKNNQLKEW-------------------KKLHKKKYREELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +         LA+ T  
Sbjct: 42  VKANAEVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVLNSLSELPTSQGILAIVTLE 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  + +   LL+  D++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 101 TQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++                      +++     ++   +  ALILG EG G+
Sbjct: 159 QGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSGV 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 219 SPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 282

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 10/260 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDW- 83
                 +   ++S    +       G   V  AL        ++ +L  T+ A  R    
Sbjct: 20  PRVVAARRLTRRS-GRDRAARFLAEGAQAVREALAWSAAGRGRVHELFVTEVAAERNQEL 78

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            DA      P+  V  +    +         +A+     +        +++L+ VL  V 
Sbjct: 79  VDAAASSGVPISVVTDKAAAALSETVTPQGVVAVCDPVEVPLDAALTPSARLVAVLHGVG 138

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G ++R A A   D ++         +    ++++G++ H+P  R  +  D     
Sbjct: 139 DPGNAGTVVRVADAAGADAVVFAGDSVDVHNGKCVRASTGSVFHLPIARARSAEDVFAAC 198

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + G + +     + + L             A + G+E  GL  +   +      + + G
Sbjct: 199 RAAGLRLVAADGYATEDLVTADLRGDLAHPTAWVFGSEAHGLPDEVVTSLDGALKVPLYG 258

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LN++ AAAV LY +  
Sbjct: 259 GAESLNLATAAAVCLYASAR 278


>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI  +                         +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKIKEILKLKD-------------------RKHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T   L  L  +   P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKTLEVLKDEI--PNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     +     +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENT----KIDFENNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  +  +    +T   Q   +          D  KPL +     +DK ALI+G EGK
Sbjct: 154 QGNLFQVNLVNEYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEGK 213

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 214 GISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA1]
          Length = 273

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ 
Sbjct: 35  DESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNA 93

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +          A+          D     +L ++   V DP N G ++R A AF  D +I
Sbjct: 94  LSDTVTSQGIFAVCRRVTRRELPD--EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVI 151

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+      +    +S+ G++ H+P +    L DA++  H      +             
Sbjct: 152 LTRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVA 211

Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
                   IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +  
Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQ 271

Query: 280 FA 281
            A
Sbjct: 272 RA 273


>gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 269

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96
           ++    +     + G ++V  AL      +  L  T +A  R        H        V
Sbjct: 19  RTAERRKVGRFLVEGENSVGEALATH--PVHDLFYTADAEQRYSALIERAHAAGVRTSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + +  +         +A+     +         ++LL V   V +P N G ++R A A
Sbjct: 77  TDRAVRALSDTVTPPGLVAVCELLDVPLAEALGPGTRLLAVPVAVAEPGNAGTVIRVADA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D  I         +    ++++G+L H+P +R  +    L  + + G Q +  ++D 
Sbjct: 137 VGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDTISAAGIQLLATAADG 196

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+          A + G E  GL   T   A     + + G  ++LN++ AA++ LY
Sbjct: 197 EVDLDDADELLARPTAWLFGNEAHGLDAATAARADHRVRIPIHGRAESLNLATAASICLY 256

Query: 275 ITQN 278
            +  
Sbjct: 257 SSAR 260


>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 95/263 (36%), Gaps = 8/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   +++    + SR  ++     + G+     A  +  + +  +L  +   A      
Sbjct: 11  ENPLIRRLSVLVRSSRRAAKENVFLVEGLRLAEMAARSDGQILHAVLTERALAAERAAIL 70

Query: 86  NL---PHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLD 139
                    PV  VPP+        +A       +       L+  + A       + LD
Sbjct: 71  AEQLHLRGVPVNCVPPRLFAACAETDAPQGILLLMQRPPRRSLTDLVHAAEKVPFYLALD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G ILR+A A    G+I  +  +   S+ + ++  G+L ++P+I   +  + L
Sbjct: 131 RVQDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEELL 190

Query: 200 QKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +                               ++LG E  G+  +         ++ M G
Sbjct: 191 RFAQEQSLYLYAAACDADAVTHFAADLCRPTIVVLGNEANGVSERLLGAC-QHLYVPMCG 249

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV++AA   LY +    +
Sbjct: 250 QAESLNVASAATAILYESMRQRS 272


>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
           AB-18-032]
          Length = 373

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  AL    P+  ++       +                +  
Sbjct: 119 RKSNPAKDAPELLVGRNPVLEALRAQVPATALYTAQGIDMDDRVNEIIRTAADRGIAILE 178

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           +    +D++ G   +HQG+ L+  P      +        +++ LL+ LD V DP N+GA
Sbjct: 179 ISRAELDRMTG-GVLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLGA 237

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  
Sbjct: 238 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMV 297

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L         + +++G+EG+GL     +T      + M   +++LN S A
Sbjct: 298 VGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASVA 357

Query: 269 AAVALYITQNHFA 281
           AAV L       A
Sbjct: 358 AAVTLAEVARRRA 370


>gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 5/237 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +     + G H    A+ +  +K   LL T+ AL + + D ++      V  +    
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ + + +   ++   ++  G+  HI  I+            +       +   + K L
Sbjct: 139 GVVLSPKSADLYNSKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKTAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y   
Sbjct: 199 PDFEKVSQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHFA 255


>gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 303

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +  +  +           +  AL+   + I      K    R +       
Sbjct: 45  YTHLTDARLRKVYEYEHGIFIAESQTVIEVALDAGCKPISMFTDRKYINDRANGIIERCG 104

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G E     L     P      +  +N++ + VL+++ D  N GA
Sbjct: 105 DIPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCKNARRIAVLENIADVSNTGA 164

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ- 208
           I+RSA A   D ++ T            + + G +  IP+  I       Q         
Sbjct: 165 IIRSAAALGIDAVLITPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNS 224

Query: 209 -------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                       +      +     +++A+ILG+EG GL  KT +       + M   + 
Sbjct: 225 LGFKTAAMALTDNSVSIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVD 284

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV  AAAVA    +
Sbjct: 285 SLNVGAAAAVAFRELR 300


>gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 220

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 7/219 (3%)

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---- 124
             L   ++        A       ++    Q +D+     AVHQG+     P        
Sbjct: 3   LILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSD-GAVHQGIIARVKPGRQYQEND 61

Query: 125 --TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              L A+ +   L++LD V DPHN+GA LRSA A     +I  K  S   +A   K A G
Sbjct: 62  LPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACG 121

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A E +P IR++NL   ++ +       +G + ++   L Q     ++AL++GAEG+G+R 
Sbjct: 122 AAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRR 181

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            T+E    +  + M G + +LNVS A  + L+       
Sbjct: 182 LTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRT 220


>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
 gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
          Length = 515

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 20/290 (6%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVSAA 60
           ++++    + S   + + + R   +      +    +             ++G H   AA
Sbjct: 139 RNDRFGDRRRSGDERRQPSQRPRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHATQAA 198

Query: 61  LNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L    R I ++  T    +  +              V+ V    + +I G  +VHQG+AL
Sbjct: 199 LEAG-RPIHRIWCTAEMRSASKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIAL 256

Query: 117 ETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +TA   +  LD++           LL+ LD V DPHN+GA++RSA A    G++  +R S
Sbjct: 257 QTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRS 316

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL+++    L     +  +
Sbjct: 317 AGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDLSGPM 376

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y     
Sbjct: 377 VLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 426


>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp.
           PRwf-1]
          Length = 261

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 22/251 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALAR-------------LDWDANLPHPFPVKTVPP 98
           YG+H + A L++       L   +    +                         ++    
Sbjct: 8   YGIHAIHALLSHRPTDAMALFIQQGRAHKDSSTQDEADSTFEEILQLAEQMGVSIQEASR 67

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSA 154
             +  + G       +       ++   +       +  L +VLD + D HN+GA LR+A
Sbjct: 68  DKLTALCGSPQHQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRTA 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLS 213
            A   D +I  K +S S +  +AK + GA+E +P I ++NL   ++    +  F      
Sbjct: 128 AAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTAL 187

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK----ALNVSNAA 269
             + K L       K+A+I+G+EG+G+R  T E    + ++ M G       +LNVS A 
Sbjct: 188 DATAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVAT 247

Query: 270 AVALYITQNHF 280
            + LY      
Sbjct: 248 GMVLYEVSRQR 258


>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 259

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 8/260 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R +   K                     G              +  L  T+ AL 
Sbjct: 2   EKITSRENAKIKYACRLASSGAFRRSEGKFLAEGRKLCPELCR--GAALETLFCTEAALE 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +    A LP       V     DK+      HQG+          TLD  +     + L+
Sbjct: 60  KCPELAGLPG--EHYLVEDHVADKLAD-VGTHQGV-FGIFRTPVHTLDEAKTGGRYLALE 115

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   +P + +  +  A+
Sbjct: 116 RVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGAMPAAI 175

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             + +     +  +    +PL          + +++G+EG+GL  +T    +    + M 
Sbjct: 176 AALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSGTVRIPMT 235

Query: 258 GIIKALNVSNAAAVALYITQ 277
             +++LN   A ++ L+  +
Sbjct: 236 DRVESLNAGIAGSILLWHFR 255


>gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
 gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
          Length = 244

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E + ++G+  +  A+ +     +++ L  T++ L                 VP + +D+
Sbjct: 2   EETVTIFGIRAILEAIESGKSLDRVWLLKGTQSKLFEQLLHVLRNKNIAFSFVPVERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG       L +  ++         + + + ++LD V D  N GAILRSA A
Sbjct: 62  FSS--KNHQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +  +   S   +  + K+++G    +P  ++ +L D +  + +    T+G++  S
Sbjct: 120 TGVDAVFISSTGSAPLNGDVVKTSAGGAFKVPISKVQHLKDVVYYLKAHDIPTLGITEKS 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + L        +AL+ GAE  G+     +     A L M   + +LNVS A AV  Y T
Sbjct: 180 TETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYET 239

Query: 277 QNHF 280
               
Sbjct: 240 IRQR 243


>gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
 gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
          Length = 249

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 16/243 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106
           G H V A L +    + +L      + R D        A       V+    + ++K  G
Sbjct: 9   GFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLEKHAG 68

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+     P            LD    S LL++L++V DPHN+GA LRSA A   
Sbjct: 69  PQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSADAAGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKK 218
             +I  +R +   + V  ++A GA E + Y  I NL   L +      +       +  +
Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L      + +A+++GAEG GL+  T++    +  + M G +++LNVS A  V L+  + 
Sbjct: 187 SLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246

Query: 279 HFA 281
             +
Sbjct: 247 QRS 249


>gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 258

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +++ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  +    L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVSVMAVIDIPHRSLPTISGDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+  A     +IT+   +   S    ++  GA      I I       + + 
Sbjct: 122 LGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAH---FSISIYEHIAVDEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 323

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 18/275 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-----NLFLYGVHTVSAALNNP---SRKI 68
            +   K  + +R    M     K R   +       +  + G + V  AL +    S   
Sbjct: 38  KAEDRKKHKANRISNAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPASTLY 97

Query: 69  FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            Q     +   R             +   P   +D++      HQGL L+  P      +
Sbjct: 98  VQQFIDNDERVREALQLAAERGNINLMEAPRPELDRLTNGL-NHQGLVLQVPPYEYAHPE 156

Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   K++
Sbjct: 157 DLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239
           +G     P  R++NLT ALQ     G   +GL+++    +         + +++G+EGKG
Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDLAELAGPVVIVVGSEGKG 276

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     E    +  + MPG  ++LN   AA V LY
Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311


>gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355]
          Length = 246

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  +   K  H+ K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKKAKKLHHKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           ++N +  I ++ A      RL   +       V  V P+ +  +   +     +A     
Sbjct: 40  VSNGAELI-RIFALAEYAERLADFSQ------VIFVSPEILADLADSKTPQGIVAEVAFE 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +        + L++V DP N+G I+R+A A   DG+  +   +   +    +S 
Sbjct: 93  RKEIPSELSGRY---LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  RI           S         S +     + +  +   L++G EG+G+
Sbjct: 150 QGSHFHLPVYRIDTADFIRLARSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+    A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 210 SPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 310

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 18/279 (6%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           H   ++R  +   + ++ +++ R + +         +YG + V+  L + S     L+A 
Sbjct: 30  HLPVIQRKEKIIMEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAE 89

Query: 75  KNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---- 128
             A A   +   L       VK V P  +  + G E+ HQG+A   + +   T+D     
Sbjct: 90  GMAPAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAA 148

Query: 129 ---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 +  L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E
Sbjct: 149 AKDKGEAPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAE 208

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  R++N+ + ++++   G             L +      IAL+LG+EG G+    +
Sbjct: 209 RLPVARVANIGETIRRLKEQGVFVYCA-DMDGVSLRRNNLTGPIALVLGSEGSGVSQLVK 267

Query: 246 ETATSMAHLHMPG---IIKALNVSNAAAVALYITQNHFA 281
           +    +  L M      + + NVS AA + LY  Q+  A
Sbjct: 268 KLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 306


>gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
          Length = 255

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +     + G H    A+ +  +K   LL T+ AL + + D ++      V  +    
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ +   +   +    ++  G+  HI  I+            +       +   + K L
Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKTAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y  
Sbjct: 199 PDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254


>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 316

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 117/273 (42%), Gaps = 15/273 (5%)

Query: 17  DSHYAKLRRNHRDYK--KMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            +      + H   K  + +S  + +     +  +  + G ++V  AL N    +  +  
Sbjct: 39  RAEDRTYHKAHSAAKASERRSGGRPTGGRKAKASSEVVAGRNSVLEALRND-VPVTTMYI 97

Query: 74  ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                 +   R           P+   P   +D+I    AVHQGLAL+  P      + +
Sbjct: 98  AGRIDSDDRVREALKIATERSLPILETPRGELDRITD-GAVHQGLALQVPPYEYAHPNDL 156

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++ LD + DP N+GAI+RS  AF   G++   R S   +A   K+++GA 
Sbjct: 157 IDPELPGIPLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
             IP  + +NLT  L+     GF  IGL  +    L      N+ I +++G+EGKGL   
Sbjct: 217 ARIPVAQCTNLTRTLEDYRKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +ET   +  + M   +++LN   A  V LY  
Sbjct: 277 VRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309


>gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533]
 gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533]
 gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 251

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 46  PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
             + F+YG H     L     N   K+F     +   A   +         V+  P   +
Sbjct: 4   NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V  E  HQGL L  AP     LD              +++LD + DPHN+G+ILR+ 
Sbjct: 64  DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTC 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + 
Sbjct: 123 DATGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   +   K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 183 EGEDYRKWNAK-GKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
 gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
          Length = 278

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 106/260 (40%), Positives = 146/260 (56%), Gaps = 5/260 (1%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSR---HTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
               + RR      + +     SR       PE + +YG H V  AL    RK+  L AT
Sbjct: 7   PKDRQPRRERPGPVRDRPRGDPSRVPFRGPSPEVVTIYGAHAVREALKARRRKLLALYAT 66

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQ 133
           + AL R+  D         + V  + + + +G EAVHQGL LE  PL      D    S 
Sbjct: 67  ETALPRIA-DLARGAGVEPRLVDGRDLSRHLGDEAVHQGLLLEARPLPEAGVGDIEPKSG 125

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ LD + DPHN+GAILR+A AF  D +I T+R+SP  + VLAK+ASGALEH+  + + 
Sbjct: 126 IVLALDQITDPHNVGAILRTACAFGVDALIITERHSPEFTGVLAKAASGALEHVTIVSVV 185

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL ++   G+  +GL S+  +PLE       +AL+LGAEGKGLR  T+E   ++A 
Sbjct: 186 NLARALDELRGAGYGVVGLDSEGAEPLETIALPKPLALVLGAEGKGLRRLTRERCDAIAR 245

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L +PG IK+LNVSNA A AL
Sbjct: 246 LDLPGPIKSLNVSNACAAAL 265


>gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205]
          Length = 267

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+                   R +    ++++ +Q S+   +   L L G H +   
Sbjct: 1   MELITS------------------RRNPLVGRLRALHQ-SKGRREQGLLLLEGTHQLQEL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L        QLLAT   L R            ++ + P     +           +    
Sbjct: 42  LRLGLSP-EQLLATPAWLERHGSLL----GNLIERLQPVGETVLAAVATTETPDGVVATF 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A      ++ LD + DP N+G ++R+A+A   + +       P +  VL  SA
Sbjct: 97  KREALPKAQGIGAFVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVLRASA 156

Query: 181 SGA----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             A        P         A             +  D   P  +        L+LG E
Sbjct: 157 GAALALPHWRDPDRTGLVARLAEAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNE 216

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL P+    A+    +     +++LNV  AAA  L      
Sbjct: 217 GAGLHPELAALASHRVTIPHSPAVESLNVGVAAAPLLLERWRQ 259


>gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 246

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H +  A+   +  I  +   +    ++   AN      V  V P+ +  +
Sbjct: 24  RTSSYLIEGWHLLEEAMEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQDL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +     +A      L   L         +VL+ V DP N+G ++R+A A   DG+  
Sbjct: 77  ADSKTPQGVVAQLA---LPSQLLPETLDGKFLVLEDVQDPGNVGTMIRTADAAGFDGVFL 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           + + +   +  + +S  G+  H+P  R+   +       +         S      ++  
Sbjct: 134 SDKSADIYNMKVLRSMQGSHFHLPVYRMPISSILTALKSNQIKILATTLSSQSVDYKEIT 193

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   AL++G EG+G+     + A  + H+ MPG  ++LNV+ AA + L+
Sbjct: 194 PHSSFALLMGNEGQGISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243


>gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
 gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
          Length = 284

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 11/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + G    + AL         LLA     + AL+ L          P+  VP   +D +  
Sbjct: 39  IEGRRAATEALRAGVPVHRALLADGAETEGALSGLIGALER-GGVPIARVPRAKLDALSS 97

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+ LET P    T++ V         L++VLDHV D  N GAI+RSA      G
Sbjct: 98  HGA-HQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEGNFGAIVRSAEVVGAAG 156

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   + + +      K+++GA+ H+P  R+ N+  AL+ +   GF   G +  ++  + 
Sbjct: 157 VIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGAGFWVGGATEHARDTVW 216

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +IAL+ G+EG GL     E+      L   G  ++LNV+ AA V  Y     
Sbjct: 217 DASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRR 274


>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 248

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 5/240 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT+ A A+    A L     V  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVHEVFATEGAAAKF---AALLGAASVHLVTD 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ + P          N +L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCSIPEADLDQVLAGNPKLVAVPVGISEPGNAGTLIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP +   +   A+ K+   G Q +    D   
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVLSAPDAVAAVTKLKDAGLQVLATVLDGPV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            LE    +   A + G E  GL       AT+   + MPG  ++LNV++AAA+ LY +  
Sbjct: 184 SLEDADLSVPTAWLFGPEAHGLPADVAGLATAGVRIPMPGNAESLNVASAAAICLYQSAR 243


>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 298

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 130/295 (44%), Gaps = 29/295 (9%)

Query: 13  FSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQP--------------ENLFLYGVHT 56
            + ++      R+     ++   + FN + R   Q               +  F++G H 
Sbjct: 5   TNNRNGRDRGGRQERPTNRRGADRRFNDRDRQPRQKREMRVEAEAVDDTAQTEFVFGHHA 64

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
              AL     +I ++        ++  +           ++  P   +D++   +  HQG
Sbjct: 65  SVEALK-GETEINKVWLQSGLADKIRNEVMALAKKRGLIIQDAPKAKLDELTNGQ-NHQG 122

Query: 114 LALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           + L  A     T+D           +   +VLD + DPHN+G+ILR+A A    GII  K
Sbjct: 123 VVLSIAAYAYATIDDLFAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPK 182

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +   ++V+AK+++GA+EH+P  R++NL   ++++   G    G   D K     +   
Sbjct: 183 RRAVQLTSVVAKTSTGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGKDYRRWDAA- 241

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ALI+G EGKG+ P  ++T      + M G +++LN S AA++ +Y   +   
Sbjct: 242 GPTALIIGNEGKGISPLLKKTVDETLTIPMVGHVQSLNASVAASLLIYQAFSSRN 296


>gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
 gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
          Length = 258

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
                 F++G H     L         KIF     + ++A   +         V++VP  
Sbjct: 4   DSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKS 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+V ++  HQGL L   P     L+        +    L++LD + DPHN+G+ILR+
Sbjct: 64  KLDKLVDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRT 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   DGII  +R +   ++V+AK+++GA++++P +R++NL   +  +   G+   G +
Sbjct: 123 ADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTA 182

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                    +    K  L++G EGKG+ P   +       + M G +++LN   A  + L
Sbjct: 183 MSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 241

Query: 274 YITQNHF 280
           Y   N  
Sbjct: 242 YQMFNSR 248


>gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 262

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 12/247 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
                 F++G H     L         KIF     + ++A   +         V++VP  
Sbjct: 8   DSNNVDFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKS 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+V ++  HQGL L   P     L+        +    L++LD + DPHN+G+ILR+
Sbjct: 68  KLDKLVDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRT 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   DGII  +R +   ++V+AK+++GA++++P +R++NL   +  +   G+   G +
Sbjct: 127 ADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                    +    K  L++G EGKG+ P   +       + M G +++LN   A  + L
Sbjct: 187 MSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 245

Query: 274 YITQNHF 280
           Y   N  
Sbjct: 246 YQMFNSR 252


>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
 gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
          Length = 267

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 14/263 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH- 89
           K  +   + S          +YG + V+  L + S     L+A   A A   +   +   
Sbjct: 5   KMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAMAKE 64

Query: 90  -PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141
               VK V P  +  + G E+ HQG+A   + +   T++              L++ D +
Sbjct: 65  AGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLSDGI 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + +++
Sbjct: 124 EDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIRR 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--- 258
           +   G            PL +      IAL+LG+EG G+    ++    +  L M     
Sbjct: 184 LKDQGVFVYCA-DMDGVPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAAQGT 242

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            + + NVS AA + LY  Q+  A
Sbjct: 243 GVDSFNVSVAAGIILYEIQSQRA 265


>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
 gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
          Length = 279

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 107/278 (38%), Gaps = 25/278 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G   V      P  +I +L  +++   R +   
Sbjct: 6   SNAQIKELAKLQKKSRLRDERRIFLVEGPRMVEEI---PKERIERLYISES-FERKNPAY 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQ---------------------GLALETAPLLSP 124
                 P + +       +   +                             ++      
Sbjct: 62  IRELGMPAEVLSDPVFSYVSDTKNPQGILAVVKRLEYTMEDVLGKSALKCEEKSGEKEKN 121

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             +       ++VLD++ DP N+G I R+A A    GI+ +       +  + +S  GA+
Sbjct: 122 PENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAV 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P+  + +L  A++ + S G +T     + K   ++E   +  A ++G EG GLR + 
Sbjct: 182 FRMPFFYVKDLPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDEV 241

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E A  +  + M G  ++LN + AAAV ++       K
Sbjct: 242 SECADCLIRIPMCGKAESLNAAVAAAVLMFEAGRQRRK 279


>gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 248

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG- 106
            +YG+  V  A+     ++  +L  ++   +LD  A L      P +  P   +D+    
Sbjct: 4   LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDRRSAG 63

Query: 107 ------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                   +  +   +    +            + + LD V DP N GA++RSAVA    
Sbjct: 64  GRHQGAVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGAR 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +  S   +    ++++GA+EH    R+ +L DAL+ + + G   I L +     L
Sbjct: 124 AILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIALDAQGPVEL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +A+++GAE KG R   +     +A L M G I +LN S A A+ALY      
Sbjct: 184 GELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQR 243


>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
 gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPP 98
           +  + +   + G   V  A+ N    I Q+  ++   N   R   + N     P+  V  
Sbjct: 23  YRIRRKEFIIEGFRFVKEAI-NSEFYISQIFLSEYFTNREERFFLERNNKVKCPIYFVTD 81

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + +  I   E          A + +  L+        ++ D + DP N+G I+RSA A  
Sbjct: 82  EILRSISCTENPQG----IIAVVKNKELNIKDEQGFYILADRIQDPGNMGTIIRSAHASG 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GIITTK      +    ++  G++ +IP I+  NL + +  +   GF+ I  S DS  
Sbjct: 138 ALGIITTKGTVDVYNEKTLRATMGSIFYIPIIQDENL-EKVSTLRQMGFKLISSSLDSDI 196

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    KI + +G EG GL    ++ +    ++ MPG  ++LN + AA++ ++    
Sbjct: 197 NFYDMDLRGKIIIAIGNEGNGLLQDVKKISDIEVNIPMPGNAESLNAAVAASIMMFEVVR 256

Query: 279 H 279
            
Sbjct: 257 Q 257


>gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 255

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 5/236 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +     + G H    A+ +  +K   LL T+ AL + + D ++      V  +    
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ +   +   +    ++  G+  HI  I+            +       +   + K L
Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLADVITDFQDAAIPVYASMLDKAAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y  
Sbjct: 199 PDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIYHF 254


>gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
 gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 258

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A    + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATVHDEV 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +            +        +    +   +L  +    L++  D + D
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGESISVMAVIDIPHRSLPTISGDCLIL--DGLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG +LR+A A     +IT+   +   S    ++  GA      I I       + + 
Sbjct: 122 LGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHF---SISIYEHIAVNEILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS + K +        IA +LG EG+G+R +    A     L  PG  ++L
Sbjct: 179 KLKTPLYATSSHTNKVIYDHDLTSPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A +V  Y      
Sbjct: 238 NVGIAGSVCFYEMLRQR 254


>gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 233

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 130/232 (56%), Gaps = 2/232 (0%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G++AVH
Sbjct: 2   YGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAVH 61

Query: 112 QGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QG+A+    L S  + D       L++LD V DP N+GAILRSA AF    ++  +R +P
Sbjct: 62  QGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNAP 121

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            E+  LAK+ASGALE +P   + NL   L  + S  F  +GL +             ++A
Sbjct: 122 DETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRVA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY       K
Sbjct: 182 LVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIR-RGK 232


>gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 261

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +++R T+  E ++L+G+H V  AL NPSR+  +L+ TKNA  RL            + V
Sbjct: 13  KERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLGEAVA-AGGIEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+          L+++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    ++   R+S  E+  LAK+ASGALE  PY+R+ NL + ++++ + G+  +GL
Sbjct: 132 SAEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGL 191

Query: 213 SSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            S++   L +         + L+LGAEG GLR KT++T   +  +   G   +LNVSN
Sbjct: 192 DSEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249


>gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
          Length = 266

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 6/233 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            ++ +++G H   AALNNP R I  +  T++    L            K V  + + +++
Sbjct: 28  KKSYYIFGTHASLAALNNPLRVIRYIYCTESCFLSLSKLI---QKHDYKIVTTKFLHQLL 84

Query: 106 GKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           G + VHQG+A+ T PL       +D    +  + +LD + D +N+GAI+RSA AF+   I
Sbjct: 85  GSQIVHQGIAVNTIPLTINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNISTI 144

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  S  E+  +AK A GALE I  +++ NL + +  +  +GF  IGL  ++   L +
Sbjct: 145 ILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQLTE 204

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  + K+A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y 
Sbjct: 205 QTFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYE 257


>gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
 gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
          Length = 255

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 38  QKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLP 88
             S++  Q +  F     +YG   V  AL + +  +++L    +     +          
Sbjct: 2   NDSKNYQQKKRFFNDLLTIYGRKPVLEALEDSTMSLYKLHLADSNKSGGIIAEIIKLAEK 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVN 142
               ++    +++ +I       QG+A +       +LD     +       L+ LD++ 
Sbjct: 62  RGVEIQWHDRKSLSRISRNSKQDQGVAADIKVDKHQSLDHYLQQKTNERSLRLIALDNIT 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+G I+RS  A + DG+I  ++   + S ++ K++ G +   P +    L   L  +
Sbjct: 122 NPQNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKASVGTVFKAPLLHCETLAQGLGAL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                    LSS +K+ L +      +  ILG E +G+  + Q+ +     + M   +++
Sbjct: 182 RDRDVTICTLSSHAKQSLFEYQAQQSVVYILGNETEGVSEEVQKLSDQQLSIPMNNGVES 241

Query: 263 LNVSNAAAVALY 274
           LNV+  AA+  +
Sbjct: 242 LNVAVTAALIAF 253


>gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 266

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 9/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
                 + +     K    +      L G   VS AL      + +L AT  AL R    
Sbjct: 5   PRSPRVRGVAKLA-KRDARADTGLFLLEGPQAVSEALAFRPDLVQELFATPTALDRYPDL 63

Query: 85  AN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           A         V+ V    I  +         + +      S          L+ +L+ V 
Sbjct: 64  ARAVRESGIEVEFVTEDVIASMADTVTPQGVVGVCRQFPTSLKQILGDEPLLIAILEEVR 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G I+R+A A   D +I T R     +  + ++ +G+L H+P   +  L   L+++
Sbjct: 124 DPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLERV 183

Query: 203 HSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + G Q +                      A + G E +GL+ +    A     + + G 
Sbjct: 184 RAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLALADRAVVVPIYGQ 243

Query: 260 IKALNVSNAAAVALYI---TQN 278
            +++N++ AA+V LY     Q 
Sbjct: 244 AESMNLATAASVCLYESAFAQR 265


>gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 248

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 21/253 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +Q   QK ++ ++     + G  ++   L    R   +LL            A   
Sbjct: 6   QVKLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------ATAL 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +  P+  V  + + K+   +   +GLA+         L       +++ LD+V DP N+G
Sbjct: 57  NSQPITLVSKEELRKVSSLKNPDEGLAIFHQRQHKGIL----QEGVILALDNVQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R    F  + +I   +     +  + ++  G+L  +    +           +    
Sbjct: 113 TLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCAL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
            +       + L      +   LILG E  G+ P+ +  A  +  +   G     ++LNV
Sbjct: 168 PLYAMDLDGENLYTTEFPEDCVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNV 227

Query: 266 SNAAAVALYITQN 278
           + A A+ +   + 
Sbjct: 228 AMAGAIVVSQVRK 240


>gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
 gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
          Length = 238

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 8/234 (3%)

Query: 55  HTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           H V A L     KI +LL      +   +           P   V    +DK        
Sbjct: 2   HAVRALLQKHPGKIDRLLLSEQRHDHRLQEIAQLAQERRVPFSQVGKSALDKAADGAHQG 61

Query: 112 QGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               L+   + + T     L+ +    LL+VLD V DPHN+GA LRSA A     +I  K
Sbjct: 62  VVAYLKADRMSNETDLEELLEKLEEPALLLVLDGVTDPHNLGACLRSANAAGVHAVIVPK 121

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +A   K A GA E  P IR++NL   L+ + ++G   +G + ++++ L Q    
Sbjct: 122 DKSAPLNAAARKVACGAAEVTPLIRVTNLARTLKHIQTYGVWLVGAAGEAEQSLYQADLK 181

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +A+++GAE KG+R  T+E   S+ ++ M G + +LNVS A  V L+      
Sbjct: 182 GSVAIVMGAEDKGMRRLTRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQR 235


>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
 gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
          Length = 542

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 20/290 (6%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVSAA 60
           ++++    + S   + + + R   +      +    +             ++G H   AA
Sbjct: 172 RNDRYGDRRRSGDERRQPSQRSRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHATQAA 231

Query: 61  LNNPSRKIFQLLATKNALA--RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L    R I ++  T    +  +              V+ V    + +I G  +VHQG+AL
Sbjct: 232 LEAG-RPIHRIWCTAEMRSASKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIAL 289

Query: 117 ETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +TA   +  LD++           LL+ LD V DPHN+GA++RSA A    G++  +R S
Sbjct: 290 QTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRS 349

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL+++    L     +  +
Sbjct: 350 AGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDLSGPM 409

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y     
Sbjct: 410 VLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARR 459


>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
          Length = 255

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 118/278 (42%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ ++                            +   +     L G H V  A
Sbjct: 1   MEIITSNQNSRVKIWTSLQTL-------------------KGREKSGTYMLDGWHLVQDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N +  I  ++AT+  + +   D   P   P   V  + + + + K    QG+  +T+ 
Sbjct: 42  L-NQAAPIQAVIATEEQMDQHLIDV--PQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       ++   ++LD + DP N+G ++R+A A    G+  +K  +   +  + ++ 
Sbjct: 98  PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  ++  +L D + K+ +  +   G + S++    +  +     ALILG EG+G
Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + P+ Q   +   H++  G  ++LNV+ A  + ++   
Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFALN 255


>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 257

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 5/255 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              +   +   K       K +   +     L G+H V  A+   + K   ++AT+  +A
Sbjct: 2   ERIISNQNARVKAWAKLATK-KGRQENHTYLLDGLHLVEEAVKAGA-KFHAIMATEKQMA 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                 N+PH  P   +  +    I G     QG+  E +        +  +    ++LD
Sbjct: 60  DYLP--NVPHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPEKTFDPSYVHDGAWLLLD 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ++R+A A    G++     + + +  + ++  G+  H+  +         
Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEWVA 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               +         ++  K       + +  LI+G EG+G+  +  E  T+  ++ + G 
Sbjct: 177 ALATNNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKTTANLYIPIQGQ 236

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ A  + ++
Sbjct: 237 AESLNVAIAGGILMF 251


>gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 244

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ N  ++I ++    +A + L  +       +      VP + ++++   
Sbjct: 7   IFGIRAIIEAI-NAKKEIDKVFIQSDAQSELMQELQKLMKKNSINFSYVPVEKLNRLT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     AP+    L+             L ++LD ++D  N GAI+R+A     D
Sbjct: 64  PNNHQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S   +    K+++GA+ ++P  ++ ++ DA+  + + G +T+  +  ++  +
Sbjct: 124 GIIVQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY T    
Sbjct: 184 YDISLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243


>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 265

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 5/253 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++ + + +           G+  +  AL+        ++  +     L   A 
Sbjct: 11  NDTVKGIRALHMR-KEREVTGQFLAEGLKFIGEALDQGRAPRLLMVGMEARPHPLLDRAK 69

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     + TV    ++KI  +E     L +              ++   + L+ V D
Sbjct: 70  AATLEAGGEIVTVTHPILEKISRRENPQTVLGVFDQAYTRLDQLDPASASCWIALEQVRD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A  C G+I         S    ++  G++     I    +   L    
Sbjct: 130 PGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVF-AVAIVRCTVEAFLAWRT 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +W    +G   D+     +        +++G E  GL             + M G   +L
Sbjct: 189 AWPGSVVGTRLDATVSYREAAYAGPTLILMGNEQAGLTDGLAAACDVNVKIPMRGRADSL 248

Query: 264 NVSNAAAVALYIT 276
           N++ A  +  Y  
Sbjct: 249 NLAIATGIMAYAV 261


>gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314]
 gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 272

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                      K+    +       G ++V AA+   +     L  T+ A  + +     
Sbjct: 14  PRIVNAAKLL-KTAQRKKTHQFLAEGENSVEAAIATGAATD--LFVTEQAAEKFEEIVRT 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V T  +  +    +          AL    L +        S+L+ V     +P 
Sbjct: 71  AGYMNVYTHPITDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R A A   D ++        +   + ++++G+L H+P  R  N+ D L ++ S 
Sbjct: 131 NAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQ 190

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G Q +  ++D +  L+      +   A + G E  GL  +    A     + + G  ++L
Sbjct: 191 GLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESL 250

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ LY +  
Sbjct: 251 NLATAASICLYESSK 265


>gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus]
 gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           floridanus]
          Length = 254

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 12/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+HTV + +N    +I  +      ++   +            ++    + ++ I
Sbjct: 2   SELVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLKSLIYRIRKMNINIQECTRRVLN-I 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              ++ HQG+  E  P+ +   D              LL+VLD + DPHN+GA +RSA A
Sbjct: 61  KSMKSAHQGIIAEVIPMPALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II  +  S + +A + K ASG+ + +P++R++NL+  L+ +  +    +G    S
Sbjct: 121 AGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVLRS 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + L      D IAL++G+E  G+R  T+E    + H+       +LNVS A  + L+ T
Sbjct: 181 NQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLFET 240

Query: 277 QNHFA 281
                
Sbjct: 241 VRQRK 245


>gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 282

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                      K+    +       G ++V AA+   +     L  T+ A  + +     
Sbjct: 24  PRIVNAAKLL-KTAQRKKTHQFLAEGENSVEAAIATGAATD--LFVTEQAAEKFEEIVRT 80

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V T  +  +    +          AL    L +        S+L+ V     +P 
Sbjct: 81  AGYMNVYTHPITDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPG 140

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R A A   D ++        +   + ++++G+L H+P  R  N+ D L ++ S 
Sbjct: 141 NAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQ 200

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G Q +  ++D +  L+      +   A + G E  GL  +    A     + + G  ++L
Sbjct: 201 GLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESL 260

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ LY +  
Sbjct: 261 NLATAASICLYESSK 275


>gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
 gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
          Length = 275

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 46  PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
             + F+YG H     L     N   K+F     +   A   +         V+  P   +
Sbjct: 4   NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V  E  HQGL L  AP     LD              +++LD + DPHN+G+ILR+ 
Sbjct: 64  DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + 
Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 183 EGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 249

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 16/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +YG+H +  A+ +  R I +L          N   +     +     P+  VP     +
Sbjct: 6   IIYGIHPLIEAIQS-KRSISKLFFQIGWKKKCNPYYKKLISLSKRENIPIHIVPKNKFHQ 64

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    +P+ + +++           + LL++LD + D  N G+I+R+A  
Sbjct: 65  L--NNKNHQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTAAC 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   +Y+    +   K++SGAL  +P  +  N+   ++ +   G + +  +  S
Sbjct: 123 AGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATEKS 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   +   A+ILG E  G+ PK  E     A +     I +LNVS A  + LY  
Sbjct: 183 NIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEV 242

Query: 277 QNHF 280
               
Sbjct: 243 FRQR 246


>gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 308

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 104/284 (36%), Gaps = 21/284 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D    +L     D++ ++  + +         +   G   +   L      +  L
Sbjct: 26  ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGP-LIVERLLASRYPVRTL 80

Query: 72  LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-D 127
           +     L +       A+L       ++  +T+ ++ G + +H+GL          +L +
Sbjct: 81  VGFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELSLSE 139

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ +  ++VL+ V D  NIG+I R+A     D I+     +        + + G +  +
Sbjct: 140 VIKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRL 199

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAE 236
           P+                  ++           +    +            KIAL++GAE
Sbjct: 200 PHASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAE 259

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G GL  +T       A + M     +LNV+ AAA+ALY  Q   
Sbjct: 260 GPGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGR 303


>gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
 gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
          Length = 251

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 46  PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
             + F+YG H     L     N   K+F     +   A   +         V+  P   +
Sbjct: 4   NNDEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V  E  HQGL L  AP     LD              +++LD + DPHN+G+ILR+ 
Sbjct: 64  DQMVNHE-NHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + 
Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 183 EGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 276

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 13/277 (4%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D +  +L     DY+ +   + +         +   G   V   L      +  +
Sbjct: 4   IIRIDDPNDPRLD----DYRDLNHSDTRPDLPGGKGLVIAEG-SLVIPRLLESRFPVRSI 58

Query: 72  LATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           L  +  L  L         +  PV  V  + + ++ G +     +A           + V
Sbjct: 59  LGFQPKLDSLLAALGDAGANDVPVYEVTREVLAEVAGFDMHRGLVAAADRAPEYSVGEVV 118

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +  L +L+ V D  NIG+I R+A     DG++     +      + + + G +  +PY
Sbjct: 119 DGASTLCILEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPY 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
             +   T   Q   ++  +            E            K A+++GAEG GL   
Sbjct: 179 AHMEGKTTNWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEH 238

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A + M     +LNV+ AAA+  Y    H 
Sbjct: 239 AMRATDVRARIPMQPGTDSLNVATAAAIGFYEALRHR 275


>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 282

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 9/266 (3%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +          +   +++    +       G   V  A       + +L AT  A  R  
Sbjct: 9   ISPRSPRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAGYGDTLV-ELFATVEAAERYA 66

Query: 83  WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       V       I+ I         + +                +L+ VL H
Sbjct: 67  DIVGAAREVGARVHLAADAVIEDISTTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAH 126

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+ 
Sbjct: 127 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVA 186

Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +      +  L+ E          A + G E  GL  +T+    ++  + +
Sbjct: 187 GLREAGVRVLAADGAGEDDLDTELDGGTMRGPTAWVFGNEAWGLPEETRALTDAVLRVPI 246

Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281
            G  ++LN++ AAAV LY +     A
Sbjct: 247 HGKAESLNLATAAAVCLYASARAQRA 272


>gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 236

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 13/247 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K  +   QK ++        + G H    A+      I ++ A +N   +L   +    
Sbjct: 2   VKNAKKLRQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRDQLATFSQT-- 55

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                 V    +  +   +   QG+            D  +   L +  + V DP N+G 
Sbjct: 56  ----VWVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I + + +   S    +S  G+  H+P  R+++     +         
Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S       +    +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228

Query: 270 AVALYIT 276
            + ++  
Sbjct: 229 GILIFHL 235


>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
 gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
          Length = 263

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 91/238 (38%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  +  +   
Sbjct: 21  RRRAARFLAEGPNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLAAL-DCPVHLITERAAK 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P          + +L+ V   +++P N G ++R + A    G+
Sbjct: 78  ALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLSDAMGAAGV 137

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +         +    ++++G++  +P +   +L +A+  +   G Q +  + D +  L++
Sbjct: 138 LLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDLREAVAAVREAGLQLLATTVDGEVRLDR 197

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    A + G E  GL  +    A     + M G  ++LNV++AAA+ LY +  
Sbjct: 198 AGELLAKPTAWLFGPESHGLPSEVAAAADHRVRIPMAGGAESLNVASAAAICLYQSAR 255


>gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
 gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
          Length = 287

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 7/235 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIV 105
           EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A   H    ++      +D++V
Sbjct: 44  ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             ++VHQGL L+  P        L    + Q+++VLD V DPHN+GAILRSAVA     +
Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KP 219
           + T R+  SE+ VLAKSASGA++ +  + I NL+ +L ++    F  IGL S+     + 
Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGLDSEGPLEVQE 223

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++K  K+AL+LGAEGKGLR +T+E  T++A L MPG IK+LNVSNAAA++LY
Sbjct: 224 TLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLY 278


>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 257

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 5/255 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              +   +   K       K +   +     L G+H V  A+   + K   ++AT+  +A
Sbjct: 2   ERIISNQNARVKAWAKLATK-KGRQENHTYLLDGLHLVEEAVKAGA-KFHAIMATEKQMA 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                 N+PH  P   +  +    I G     QG+  E +        +  +    ++LD
Sbjct: 60  DYLP--NVPHGVPAFEISEEVAKHIAG-TNTPQGIFAEISLPEKTFDPSYVHDGAWLLLD 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ++R+A A    G++     + + +  + ++  G+  H+  +         
Sbjct: 117 KIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNGDLSEWVA 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               +         ++  K       + +  LI+G EG+G+  +  E  T+  ++ + G 
Sbjct: 177 ALAANNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKTTANLYIPIQGQ 236

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ A  + ++
Sbjct: 237 AESLNVAIAGGILMF 251


>gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 258

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 8/261 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                  +  YK+++   Q S    +     + G   V   + +     + +++     A
Sbjct: 3   KKISSPENSFYKELKKLYQDSAFRRKNGMFIVEGEKLVFELITDNWPLKYLVVSESYWQA 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +   D        +  +  Q  +KI         LA+     LS            +VLD
Sbjct: 63  KKIDD----DGVKIVVLTDQLFNKISELVTPPGILAVACMKSLSWPAGKDGA---FLVLD 115

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G +LR+A  F   G+I         +  + ++++G       +      +  
Sbjct: 116 GLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAGTAF-KFPVLRMEADELK 174

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +           S+   PL       K  + +G EG+G+    +        + MPG 
Sbjct: 175 DIILKNNIPLFLAESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLKSLPHQKISIPMPGK 234

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I++LN + A  + +Y    + 
Sbjct: 235 IESLNAALAGGIIIYEWAKNR 255


>gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
 gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
          Length = 248

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
                 F+ G H    AL       K+F     K                 V TVP   +
Sbjct: 2   KTENTDFIIGRHPAVMALKADQEINKVFVQAGLKADAIAEIIKLAKQKRLVVSTVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++   +  HQG+AL  A      LD               ++LD + DPHN+G+I+R+A
Sbjct: 62  DQLTDHQ-NHQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPHNLGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GALEH+P  R++NL     K        +  + 
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNL-VQTAKELKDRGVWLFGTD 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +       +  +AL++G EGKG+ P  +++   M  + M G +++LN S AA++ +Y
Sbjct: 180 MKGRDYRTWDAHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNASVAASLLIY 239

Query: 275 ITQNHF 280
              N  
Sbjct: 240 QGFNSR 245


>gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDK 103
             +  GVH V+AA++    ++ QL   +             A   H    +      I++
Sbjct: 3   EDWAIGVHAVAAAIDAG--EVEQLWVAREREEDRRIREVVAAAELHGIRPRWAATAEINR 60

Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + G       +A   A         L+ +    LL++LD + DPHN+GA LRSA A   +
Sbjct: 61  LGGGPQHQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGAN 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K ++   +A + K+A+GA   +P + ++NL  ++  +  +G+   GL+ ++ + L
Sbjct: 121 AVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQDL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL+LG+E KGLR   +E    + H+ M G +++LNVS A A+AL+  +   
Sbjct: 181 YEADLRGPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALFEARRQR 240


>gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 285

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D    +L     D++ ++  + +         +   G   +   L      +  L
Sbjct: 3   ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGP-LIVERLLASRYPVRTL 57

Query: 72  LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +     L +       A+L       ++  +T+ ++ G +     LA           + 
Sbjct: 58  VGFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYDMHRGLLAAANRAPELGLSEV 117

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++ +  ++VL+ V D  NIG+I R+A     D I+     +        + + G +  +P
Sbjct: 118 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAEG 237
           +                  ++           +    +            KIAL++GAEG
Sbjct: 178 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 237

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            GL  +T       A + M     +LNV+ AAA+ALY  Q   
Sbjct: 238 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQRGR 280


>gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
 gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
          Length = 329

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 21/294 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H AK        K+      + R   +  +  + G + V  AL   
Sbjct: 37  TPKAEDRVYH--KAHRAKQLAERSAAKR-GPVTDQVRGRVKLTDETVSGRNPVLEALRAG 93

Query: 65  ---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                    +    +   +      L    PV       +D++ G EAVHQG+ L+  P 
Sbjct: 94  IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152

Query: 122 LS-------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                               +R   LL+ LD + DP N+GAI+R+  AF  DG+I  +R 
Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S   +A   ++++GA   +P  +  NL   L  +H  G+  +GL       L       +
Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVSLPGLALATE 272

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + L++GAEGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326


>gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 278

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 9/261 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     +S+   +           +S AL    + +  L  +++  A          
Sbjct: 18  YTQLTHAQLRSQRDPEKGIFIAESGKVISCALKAGCQPLSCLTESRHLPALTQLLPPPWD 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P+ T P   + ++ G E     L     P L    +  R+++ L+VL+++ D  NIGA
Sbjct: 78  NIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPEEICRSARRLVVLENITDSTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203
           I RSA A   DG++ +            + + G +  IP+  +        +        
Sbjct: 138 IFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHGDAFQWPQPGIATLRS 197

Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                       +            +K+A++LG+EG GL  +T       A + M   + 
Sbjct: 198 LGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTARIPMYHGVD 257

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNV+ A AV  +       K
Sbjct: 258 SLNVAAAGAVIFWQL-RAREK 277


>gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
 gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
          Length = 258

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 82/247 (33%), Gaps = 20/247 (8%)

Query: 53  GVHTVSAALN----NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           G H V   +     +  ++I      +      +          F V  V  + +D +V 
Sbjct: 8   GFHAVEEKVKLYSVSKPKEISLKIFYSKPGPRIKKIISLAKDSNFEVSLVNEKELDSMVS 67

Query: 107 ----KEAVHQGLALET---------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
                   H+G+ L              L   +     + +++VLD V DPHN+GAILRS
Sbjct: 68  SLPETARDHRGIILLVEGEKENSKNQIQLEQWITCCPENAVVIVLDSVTDPHNVGAILRS 127

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    ++     S   +     + + A                              
Sbjct: 128 CDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAKVPNLVRAVQILKSAGFWIYG 187

Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D+      +     K  +I+G+EG G+    QE    +  +   G I +LNVS AA V 
Sbjct: 188 ADAGGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSVAAGVL 247

Query: 273 LYITQNH 279
           LY     
Sbjct: 248 LYEAYRQ 254


>gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 267

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 90/248 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R  S            +  AL+     +  L    +      +      
Sbjct: 17  FSTLTEAQLRNRLESDKGIFIAESPKVIKVALDTGYEPLALLCEQNHITGDAAYIIGRCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G       L     P      +  ++++ +++++ V D  NIGA
Sbjct: 77  DIPVYTGSRDLLTTLTGYILTRGVLCAMRRPKPQNIKEVCQDARRIVIINGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+  I N    L  +       
Sbjct: 137 IFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFLVPWTWIDNSLSDLCGLGFRTVAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +             K+A+I+G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
          Length = 268

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 5/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  V  +   
Sbjct: 26  RRRAGRFLAEGPNLVEAASRRG--LVRDVFVTEVAEQRHASLLAGL-DCPVHPVTERAAK 82

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P            QLL V   + +P N G ++R A A    G+
Sbjct: 83  ALSDTVTPAGLVAVCDMPATHLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAGV 142

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I   R     +    ++++G++  +P +   +   A+  + + G Q +  + D ++ L++
Sbjct: 143 ILGGRSVDPYNGKCLRASAGSIFCVPVVVAPDALAAVDAVRAAGLQALATTVDGERRLDE 202

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A + G E  GL  +    A     + M G  ++LNV++AAA+ LY +    
Sbjct: 203 AGELLGRPTAWLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARAL 262

Query: 281 A 281
            
Sbjct: 263 K 263


>gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 320

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 106/271 (39%), Gaps = 16/271 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82
              D        Q+        +  L G + V  AL          L      +      
Sbjct: 47  RRPDSGGGARGPQQGERRRADASDLLVGRNPVVEALRAGMPATRLFLANSLDPDERVNEA 106

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAV----HQGLALETAPLLSPTLD-------AVRN 131
                     V  V    +D+           HQGLAL+  P      +           
Sbjct: 107 ARIAGERGLDVLEVTKTELDRRCESNGQPGAAHQGLALQVRPYQYRAPEALLDTALESDT 166

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++ LD V DPHN+GAI RSA AF+  G++  +R S   +    K+++G L  +P  +
Sbjct: 167 PALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWKTSAGTLARLPVAQ 226

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
            +NLT AL+     G   +GL +    P+         + +++G+EGKGL    +E    
Sbjct: 227 ATNLTRALEGYKKEGVFVVGLDAGGDTPIPDLELATGPLVIVIGSEGKGLSRLVREACDV 286

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +A + + G  ++LN S AA V+LY      +
Sbjct: 287 VASIPI-GNAESLNASVAAGVSLYEVARRRS 316


>gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CB0101]
          Length = 261

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 97/282 (34%), Gaps = 27/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+                   R +    ++++ +Q  +   +   L L G H +   
Sbjct: 1   MELITS------------------RRNPLVGRLRALHQ-PKGRREQGLLLLEGTHQLQEL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L    +   QLLAT   + R           P++ V  + ++ +   +     +A     
Sbjct: 42  LRLGLQP-EQLLATPAWIERHGALLA-DQDLPLQPVGEEVMEAVATTDHPDGVVATLARQ 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L        +   ++ LD + DP N+G +LR+A+A   D +       P +  VL  SA
Sbjct: 100 ALPVA---RGDGAFVLALDQLQDPGNLGTLLRTALAAGVDEVWLGGGADPLQPKVLRASA 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
             AL                   +          L     +P  Q        L+LG EG
Sbjct: 157 GAALALPLLRLSDRSELLPLLERAVAAGRQLAATLVQPGVQPYWQLDWTRPTVLLLGNEG 216

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL P+    AT    +     +++LNV+ AAA  L      
Sbjct: 217 AGLHPQLAALATHRITIPHSAAVESLNVAVAAAPLLLERWRQ 258


>gi|330995662|ref|ZP_08319560.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329574721|gb|EGG56282.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 263

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 8/255 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  QK +   + +     G   V   L          L       R   +    
Sbjct: 6   KIKLIRSLEQK-KFRKEQQLFVAEGHKLVDDLLPAFDCTFLAALKEWLDTRREVVETLAR 64

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               ++ V  + + K   ++     LA+          + +   QL + LD V DP N+G
Sbjct: 65  KGCEIQEVSAEELQKTSLQKNPQDVLAVFHQRQAEGAPEHILKDQLCLGLDGVQDPGNLG 124

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GA+  +    +S          +    
Sbjct: 125 TIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYLS---LTDLLRAAETDT 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264
            +  +      +     +    +++G EG G+            ++          ++LN
Sbjct: 182 PVYGTFLDGNDMYGTELSSNGLIVMGNEGNGISRDIASLINRKLYIPNYPLERNTSESLN 241

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 242 VAVATAIVCAEFRRR 256


>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 356

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 11/248 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96
            R   Q E+  + G ++V  AL    P+  ++       +   +           PV  V
Sbjct: 100 RRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVLEV 159

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
               +D+I G +AVHQGLAL+  P                    LL+ LD + DP N+GA
Sbjct: 160 MRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQLPLLVALDGITDPRNLGA 219

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+ +   G   
Sbjct: 220 IIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGVFV 279

Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL       L +    +  I +++G+EGKGL     ET  ++  + +    ++LN   A
Sbjct: 280 VGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTVVSIPIGASTESLNAGIA 339

Query: 269 AAVALYIT 276
           A+V LY  
Sbjct: 340 ASVTLYEI 347


>gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 258

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 97/257 (37%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   ++S +  + +   L G H   A +    +K+  +  T+NAL   D 
Sbjct: 8   SKDNPKIKHLRGLIEQSSYRKKQDQTVLEGTHLGLAWVE-KRKKLNSIFTTENALEHPDI 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L        V  +++ + +                 S          L++  +++ D
Sbjct: 67  CDILDEYEGAVFVIAESLYRDLSTLGTTLPFLAVVDLPSSSQSVDFSLDTLIL--ENIQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A     +I TK  +   S  + ++  GA   +       + D L++  
Sbjct: 125 PGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLNTYENVAIEDVLERFE 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              + T    ++S    +          ILG EG+G+       A     +  PG  ++L
Sbjct: 185 IPVYVTSSHQAESLYQKD---LTQACVWILGNEGQGVSDFALAHA-QALSIPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAIAGSICFFEMVRQR 257


>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
 gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
          Length = 339

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 17/272 (6%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLA----TKNA 77
           R++         + + +   +  +     + G + V  AL      +  +        + 
Sbjct: 67  RSNGRPSGGSRPSGRGKGPKKSGSATHEMVSGRNAVLEALRA-RIPVTTVYIGTRLEADD 125

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130
             R          + +  V    +D++   ++VHQG+A++  P      + +        
Sbjct: 126 RTREILQIASGRGYNLLEVTKPELDRLTD-DSVHQGVAIQVPPYEYRDPEDLLDIAAELE 184

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L++ LD V DP N+GA+LRSA AF   G++  +R S   +A   K ++GA   +P  
Sbjct: 185 QPALIVALDGVTDPRNLGAVLRSAGAFGAHGVLVPERRSAGVTASAWKVSAGAAARVPVA 244

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249
           R +NLT  L +  S G   +GL    +  +     + D I L++G+EGKGL    +ET  
Sbjct: 245 RATNLTRTLLEYKSAGCFIVGLDGGGEVSVGDLAFSVDPIVLVVGSEGKGLSRLVRETCD 304

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++A + +   +++LN   AA +ALY      A
Sbjct: 305 AIASIPIASAVESLNAGVAAGIALYEVAKVRA 336


>gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 236

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 13/247 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K  +  +QK ++        + G H    A+      I ++ A +N   +L        
Sbjct: 2   VKNAKKLHQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRNQLAA------ 51

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            FP      + I   +      QG+            D  +   L +  + V DP N+G 
Sbjct: 52  -FPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I + + +   S    +S  G+  H+P  R+++     +         
Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S       +    +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A 
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228

Query: 270 AVALYIT 276
            + ++  
Sbjct: 229 GILIFHL 235


>gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
 gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
          Length = 299

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 14/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTIDK 103
            + G    + AL      + + L    +      LARL    +     PV+ V    +D 
Sbjct: 49  LIEGRRACAEALE-GGVPLRRALVADASGGADQTLARLVERLSEAQ-VPVERVSRARLDS 106

Query: 104 IVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A HQG+ +E++P    TL      A     L+++LDHV D  N GAI+RSA    
Sbjct: 107 LSSHGA-HQGIIVESSPFEYATLGDVISSAGSGDALVVLLDHVTDEGNFGAIVRSAEVVG 165

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GI+     S S      K+++GA+ H+P  R+ NL  AL ++   GF     +  +++
Sbjct: 166 ASGIVIANARSASVGVGAYKTSAGAVMHLPIARVPNLATALDRLKEAGFWVAAATEHAEQ 225

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    ++ L++G+EG G+    +E       L   G I++LNV+ AA V  Y    
Sbjct: 226 DAWSAPLGGRLCLVMGSEGGGISRLVRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLR 285

Query: 279 H 279
            
Sbjct: 286 R 286


>gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
 gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
          Length = 234

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V  AL+      KI     T     R            +     +  +   G  
Sbjct: 4   IIGLNAVREALDGSKNIEKIEIYKGTNKDRIRDILSKASKKNIKIFYTDKRQ-ENSQGIA 62

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+                   +   +++VLD + DP N GAI+RSA  F  DGII   R 
Sbjct: 63  ALVSEYDYYLELNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRN 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S +  + KS++GA+EH+  I+++N++D++ K+  +G+   G  +D +     E   +K
Sbjct: 123 SVSVTETVVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFPEK 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L+LG+EGKG+R K +E    + ++ M G I +LNVS A  + L     +
Sbjct: 183 LCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILLAEISKN 233


>gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
 gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
          Length = 252

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQ 99
               +++YG H   AAL N +R+ +++L T+N            +        +KTV   
Sbjct: 2   NKNKIWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNINLKTVNLN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            I+ ++   + HQG+AL+ + +   T++ +      +  +++LD + D HN+GAI+RSAV
Sbjct: 62  YINSVLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAV 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+ D II     SPSE+  ++K++SGA++ IP   + NL   ++   + G+   G  + 
Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + L +   ++K  +I G+E KG+R  T+E    +  +     I +LNVSNAAAVALY
Sbjct: 182 EGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240


>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 245

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A  +  +    +   +    R+           V  V    + +
Sbjct: 22  HRQHSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   ++   +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 PHQESFALVMGNEGQGISAEMTTLADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 321

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 17/255 (6%)

Query: 37  NQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--H 89
            Q++RH  +        + G + V+  +         L   +  +A  R+          
Sbjct: 62  QQRTRHRQKERSDNAEVIAGRNPVAECIRAG-VPASGLYVAQGIDADDRVTEAVRGAGSR 120

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVN 142
              V  V    +D++ G  A+HQGLAL+         +             L++ LD V 
Sbjct: 121 GISVVEVQRAELDRMTG-GAMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVT 179

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA++RSA AF   G+I  +R S   +AV  ++++G    +P  R  NLT  L+ +
Sbjct: 180 DPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDL 239

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            S G   +GL +DS    ++       + +++G+EG+GL    +ET      + M G ++
Sbjct: 240 KSEGLMVVGLDADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVE 299

Query: 262 ALNVSNAAAVALYIT 276
           +LN S AA + L   
Sbjct: 300 SLNASVAAGIVLAEV 314


>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
          Length = 257

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 98/255 (38%), Gaps = 5/255 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              L   +   K       K +   +     L G H V  A+   + K   ++AT+  +A
Sbjct: 2   DRILSNQNPRVKAWAKLATK-KGRQENRTYLLDGWHLVEEAIKVKA-KFHAVMATETQMA 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
               D   PH  P   +  +    I G  +   G+  E +           +    ++LD
Sbjct: 60  EHLPDV--PHGVPAFEISEEVAKHIAGTNSPQ-GIFAEISLPEKTFDPKYVHDGAWLLLD 116

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G ++R+A A    G++     + + S  + ++  G+  H+  +         
Sbjct: 117 NIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVRAMQGSQFHLEVLNGDLDEWTD 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + +       L ++  K         +  LI+G EG G+     +  T+  ++ + G 
Sbjct: 177 ALISNDLPVYGSLLNEEAKSYHDVQPATQFGLIVGNEGNGMSAALADKTTANLYIPIQGR 236

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ A  + ++
Sbjct: 237 AESLNVAIAGGILMF 251


>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 248

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 95/255 (37%), Gaps = 13/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
               ++S  QK +   +     + G+ +++  L +  + +  +      +  L     L 
Sbjct: 6   QISFIKSLQQK-KFRKEHNLFIVEGLKSITEFLASKYQ-VQTIYCLSKDIPNLP---KLS 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               V  +  Q + KI   +   + LA +E   L    L+  +   L++  D V DP N+
Sbjct: 61  QKQKVFEITEQELTKISSLQNPQEALALIEIPQLDVNVLEIEKEINLVL--DGVQDPGNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A  F    II +K      +  + ++  G+L  +    +      + +      
Sbjct: 119 GTIIRTADWFGFSNIICSKNTVDVYNPKVVQATMGSLARVNVSYVDLPAYLIAQQLPKFG 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +   +   +   +        LILG+EG G+  +          +   G  ++LNV  
Sbjct: 179 TLLDGKNIYHQDWPEAGF-----LILGSEGNGISDEIISLLDGSVTIPKLGQTESLNVGI 233

Query: 268 AAAVALYITQNHFAK 282
           AAA+     +    K
Sbjct: 234 AAAICCSEIKRKSLK 248


>gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
          Length = 298

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 11/260 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALA 79
           A LR +H   K+ ++  ++    +      L G + V   L          +     A  
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTEADE 99

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRN 131
           RL             +  +    +D++     +HQG+AL+  P      D        + 
Sbjct: 100 RLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    +
Sbjct: 219 ATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAV 271
             + M    ++LN S AA V
Sbjct: 279 VFIPMAAQAESLNASVAAGV 298


>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
           cellulolyticus 11B]
          Length = 250

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 14/249 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           + E+  + G +    AL +       LL      +   +   +        ++ V  + +
Sbjct: 3   RSEDTLIGGRNPAVEALRSGVPVRRVLLADGIDSDRRVQEIRERCEHDGIEIRVVARREL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D++ G    HQG+ +   P               R   LL+ +D V DP N+GAI+RSA 
Sbjct: 63  DRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRNLGAIVRSAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   G++  KR +   +  + K+++GAL  +P  R++N+   L  +       +GLS+D
Sbjct: 121 AFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERNVTVVGLSAD 180

Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
               ++Q   +     +AL++GAEG+GL    +E  T +A + M G +++LNVS A  +A
Sbjct: 181 GDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESLNVSVATGIA 240

Query: 273 LYITQNHFA 281
           L++     +
Sbjct: 241 LFVLSQRLS 249


>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
 gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
          Length = 238

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 114/252 (45%), Gaps = 19/252 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    QK ++  +     + G H V  A+    +++  L++TK+         
Sbjct: 6   SNNTIKTLIKLKQK-KYRDETGYYLVEGEHLVEEAMKA--KQVECLISTKD--------- 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +    P+  V  + + K+   ++    +A       +  +D  R     ++LD + DP 
Sbjct: 54  -ITSDLPIVIVSNEVMSKLSFTKSPQFIMAKCKIKKENKLIDGKRY----LILDDLQDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A+AFS D +I +       +  L +S  GA  HI  I        +  +   
Sbjct: 109 NIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIYDDLK-TVISTLKKN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             + IG + ++ + ++Q   ++K+A I+G EG G+     +    + ++ +   I++LNV
Sbjct: 168 NVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIPIN-TIESLNV 226

Query: 266 SNAAAVALYITQ 277
           + A ++ +Y  +
Sbjct: 227 AIAGSIMMYHFK 238


>gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
 gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 8/243 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +   P          +  AL      I  L+  K+   R           PV T     +
Sbjct: 42  YEPAPGIFIAESPKVIERALETGCEPISLLMEQKDFDTRGKNIIAKCKSIPVYTAKLGVL 101

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++I G +     L     P +       +N++ + VL++V +P N+GAI RSA A + D 
Sbjct: 102 EQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAIFRSAAALNMDA 161

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------S 213
           ++ T   S        + + G +  +P+  I N   +  +         G         +
Sbjct: 162 VLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRN 221

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +   E+    +K+A+ILG EG GL  +T         + M   + +LNV+ A+AVA 
Sbjct: 222 DSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAF 281

Query: 274 YIT 276
           +  
Sbjct: 282 WEF 284


>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 265

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 5/247 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH 89
           ++  + + K +H    +     G+ TV       P       L  +            P+
Sbjct: 14  RRYAALHHK-KHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPY 72

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              + ++  +   ++          A+   P   PT+   +   L++ LD V DP N+G 
Sbjct: 73  AHKLFSITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGT 132

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A  F  D ++ ++  +   +  + +S +G+L  +P+ R + +   L +    G+  
Sbjct: 133 IMRTAAWFGVDALLCSQGTADLYNPKVVRSCAGSLFALPHYRCNLMVHELSRWQQQGYSI 192

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266
           +  S + +     E   DK  +++G E  G+    Q +A  +  +   G    +++LN S
Sbjct: 193 VCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNAS 252

Query: 267 NAAAVAL 273
            AAA+ +
Sbjct: 253 IAAAILI 259


>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80
            R++  YK+++     S+   +     L G+H   A L         + +     N+   
Sbjct: 8   SRDNPLYKELKHLATSSQARRKAGRTLLDGIHLCEAYLQQVGLPPLCIASETALLNSEVT 67

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           +     +        +P      +     V  G+ +          +  R  Q  ++LD 
Sbjct: 68  VIVQQCIHSHTQCIVLPDALFHALSQ---VEHGVDILFVIDTPELTEPQRLLQSAVLLDR 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G+I+RSA A     +  +   + + S  + ++  GA      + I    D   
Sbjct: 125 VQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHF---LMEIFENVDLEA 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +       I  SS ++K L        +A + G EG+G+       AT    +   G I
Sbjct: 182 LIARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAI 241

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LNV+ ++AV  +       
Sbjct: 242 ESLNVAASSAVCFFEQVRQIT 262


>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
          Length = 308

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 55  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 114

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL +V DP N G +LR A A  
Sbjct: 115 DVLADVSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAAG 174

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I T       +    +++ G+L H+P      +  A+Q +   G + +        
Sbjct: 175 ADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGAA 234

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 235 DLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 294

Query: 275 ITQN-HF 280
            +     
Sbjct: 295 ASARAQR 301


>gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 259

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 22/265 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             HR  KK+ S +QKS         +L+G   V   L      I +LL +  A  ++  D
Sbjct: 2   PKHRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHED 52

Query: 85  ---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMV 137
                     P +    + ++++  K   HQG+     P     LD +     ++ LL++
Sbjct: 53  CRQLAEERDIPCRIESARRLEQLS-KAKDHQGILARLGPFPYAALDEILGQLTSASLLLM 111

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DP N GAI+R+A A   +G+I   R   + S+ + +S++GA+ HIP   + NL D
Sbjct: 112 LDRVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQD 171

Query: 198 ALQKMHSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            L+       Q       G  +        E  +  + LI+G E +G+ P   E  ++  
Sbjct: 172 TLEVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTV 231

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
           H+ M G +++LN + AA + ++  +
Sbjct: 232 HIPMQGAVESLNAAVAAGILMFALR 256


>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 26/277 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           LI   +++KI                  K +      +R   + +   + G      AL 
Sbjct: 2   LIESFQNDKI------------------KNVTKLLTDNRFRKKSKVFVVEGQQENERALQ 43

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                +   +                    +  V  +  +KI  + +    + +     +
Sbjct: 44  YDFEPLEFFIC-------ESIFKGAVPDGKIHYVSEKVYEKIAYRGSSEGIIGVYHTKEI 96

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +    +    +++++ V  P N+GAILRS  AF  D +I     +   +  + +S+ G
Sbjct: 97  PLSSFTPQKDSTVIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVG 156

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L  +   +  N         +       L  +S + L +     + A++ G E  GL  
Sbjct: 157 CLFGMEVYQAENKETLEFLQKNSFNIYTTLMDESAEDLYKRDFRQRSAVLFGTEHSGLSD 216

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +   + M G I +LN+SNA A+  Y +   
Sbjct: 217 FWIGKGKNTL-IPMAGSIDSLNLSNAVAITCYESLRQ 252


>gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
 gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 149/224 (66%), Gaps = 1/224 (0%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           LYG HTV+AAL NP R I +LL T+NA  RL  + N+      + V P TID+ +G +AV
Sbjct: 2   LYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDAV 60

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQGL  E  PL SP +  +    +++VLD + DPHN+GAI+RSA AFS   I+TT R+SP
Sbjct: 61  HQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHSP 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             + VLAKSASGALE +P +++ NL  AL  ++  G+ T+GL S   + L        +A
Sbjct: 121 EATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPLA 180

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+LGAEGKGLR  T++T + +A L MPG IK+LNVSNAA +ALY
Sbjct: 181 LVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALY 224


>gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
 gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
          Length = 278

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 11/240 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G   V   L +      ++   +    A  +           PV       +  I+   A
Sbjct: 33  GFQAVRDTLQSKDGTFREIWIAEGKSSARTQEIIKLATSKNIPVHFKQRHYLSDILKDMA 92

Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+                        S LL+V DH+ D  N+GA++R+A  F   G+
Sbjct: 93  -HQGIVGIADAFDYSNFHLLLKSALEAGPSALLLVADHITDSGNLGALMRTAAFFGAHGL 151

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  + K +SGA   +P  R++NL+ AL ++       +G + ++++ +  
Sbjct: 152 IIPKDRSAGITPTVLKRSSGAHTKLPVARVTNLSRALNELSRNELWIMGAAGEAEESIYD 211

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + L+LG E KGL P  ++    +  +  PG   +LN+S A  V L        K
Sbjct: 212 FDWRRPLVLVLGNERKGLSPSARKQCHGLVSIPSPGNTDSLNISVAGGVILSEICRQRQK 271


>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 294

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 11/268 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRK-IFQLLATKNALA 79
           +          +   +++    +       G   V  AL   +     + +L  T  A  
Sbjct: 26  ISPRSTRVTAAKRLARRN-VRGKERRFLAEGPQAVREALGHRSGDEPTLVELFTTVEAAE 84

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V      TI +I         + +                +L+ V
Sbjct: 85  RYAEIIGAARDEGARVHLADEATIAEIATTVTPQGLVGVCRFLDTPFDRITAARPRLVAV 144

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +V DP N G +LR A A   D ++ T       +    +++ G+L H+P      +  
Sbjct: 145 LSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVET 204

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A+  +   G + +      +  L+ E          A I G E  GL  +T+  A ++  
Sbjct: 205 AVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVR 264

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HF 280
           + + G  ++LN++ AAAV LY +     
Sbjct: 265 VPIHGRAESLNLATAAAVCLYGSARAQR 292


>gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 269

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 10/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           +N+   K   +     R  ++      L G   +  AL +  R          A   +  
Sbjct: 6   KNNARVKSALAL---KRQRARNGTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIAL 62

Query: 84  DANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVL 138
           D  L              ++K+  KE     +A+             L     +   +++
Sbjct: 63  DRELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIV 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           +    P NIGA+LR A     DG+I         +  + +S+ G +  +P  + S     
Sbjct: 123 EQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVL 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                          S      +Q+       ++ G+E  GL P     +     L M G
Sbjct: 183 DLVHQQEWQVFTTTPSAQTFYFDQD-FCQPTVVVFGSEKDGLSPDWLNGSFCNIALPMLG 241

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LN+S++ A   Y      +
Sbjct: 242 KADSLNLSSSVAAVAYEVVRQRS 264


>gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 251

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 2/242 (0%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++            G ++V AAL+    +   +               L    PV  V  
Sbjct: 6   RASVRRSEGRFLAEGFNSVDAALSTGRAEQVLVRDDDADRHADLIGRALDAGIPVHRVTA 65

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +  DK+          A+     +        + +LL++     +P N+G + R A A  
Sbjct: 66  RAADKLSETSTAPGVFAVCQLLTVGLAAVLGDDPRLLVIAVEPREPGNLGTLTRCADAMG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDS 216
            D +I         +    ++++G++ HIP +R  ++   L  +   G  T    +  + 
Sbjct: 126 ADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDVAGGLAAVADAGIVTLATTMDGEL 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 ++     A + G E  GL  +  + A     + + G  ++LN++ A+AV LY +
Sbjct: 186 SLDDADDVLARPHAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAESLNLAAASAVCLYAS 245

Query: 277 QN 278
             
Sbjct: 246 AR 247


>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
          Length = 275

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 11/268 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRK-IFQLLATKNALA 79
           +          +   +++    +       G   V  AL   +     + +L  T  A  
Sbjct: 7   ISPRSTRVTAAKRLARRN-VRGKERRFLAEGPQAVREALGHRSGDEPTLVELFTTVEAAE 65

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V      TI +I         + +                +L+ V
Sbjct: 66  RYAEIIGAARDEGARVHLADEATIAEIATTVTPQGLVGVCRFLDTPFDRITAARPRLVAV 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +V DP N G +LR A A   D ++ T       +    +++ G+L H+P      +  
Sbjct: 126 LSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVET 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A+  +   G + +      +  L+ E          A I G E  GL  +T+  A ++  
Sbjct: 186 AVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVR 245

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HF 280
           + + G  ++LN++ AAAV LY +     
Sbjct: 246 VPIHGRAESLNLATAAAVCLYGSARAQR 273


>gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
 gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
          Length = 273

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 6/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +              +  A       I  L+  ++   +           PV T     +
Sbjct: 29  YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G       L       L        +++ +++L++V +P N+GAI RSA A + D 
Sbjct: 89  KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------SWGFQTIGLSSD 215
           I+ +K  S        + + G +  IP+  + + T     MH                  
Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTDRS 208

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                E  +  DK+A+ILG EG GL  +T +       + M   + +LNV+ A+AVA + 
Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268

Query: 276 TQNH 279
               
Sbjct: 269 LAKR 272


>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 296

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 43  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 102

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL +V DP N G +LR A A  
Sbjct: 103 DVLADVSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAAG 162

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWGFQTIGLSS 214
            D +I T       +    +++ G+L H+P          +                 + 
Sbjct: 163 ADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGAD 222

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D    L+        A I G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 223 DLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 282

Query: 275 ITQN-HF 280
            +     
Sbjct: 283 ASARAQR 289


>gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 236

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 13/247 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K  +   QK ++        + G H    A+      I ++ A +N   +L   +    
Sbjct: 2   VKNAKKLRQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRDQLATFSQT-- 55

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                 V    +  +   +   QG+            D  +   L +  + V DP N+G 
Sbjct: 56  ----VWVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I + + +   S    +S  G+  H+P  R+++     +         
Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S       +    +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A 
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228

Query: 270 AVALYIT 276
            + ++  
Sbjct: 229 GILIFHL 235


>gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
 gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
          Length = 247

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A       +  +   ++   +L           V  V  + + +
Sbjct: 24  HRKGSYLIEGWHLFDEAQKAHQEFVH-IFLQEDMADKLRSLE------GVILVTNEVLKE 76

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +       QG+  E        L+ ++   LL+  + V DP N+G ++R+A A    G+ 
Sbjct: 77  LTDSP-NPQGIIAEIKMPSPTVLEDMQGKYLLL--EDVQDPGNLGTLIRTADAAGFTGVF 133

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            + + +   +    +S  G+  H+P  R + L    Q             SD     +  
Sbjct: 134 LSDKSADLYNPKTLRSMQGSHFHLPVWRDNVLQFCQQAKEVGVPVIASTLSDQSVDYQSI 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   L++G EG G+  +  E A ++ H+ MPG  ++LNV+ AA + ++
Sbjct: 194 ETPESFILVMGNEGAGISSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244


>gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
 gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
          Length = 270

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 4/251 (1%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           V  AL+     I  L+  ++   +         
Sbjct: 18  YARLSEGQLLNRHEPEKGIFIAESPIVVERALDAGCEPISILVEDRHIKNQAKNIIERCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P+ T P   +  I G +     L     P L    +  ++ + + VL+++ +P N+GA
Sbjct: 78  NIPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A + D ++ T   S        + + G +  IP+  I        ++       
Sbjct: 138 IFRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFK 197

Query: 210 IGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + +   +  + KN    +K+A+ILG EG+GL   T  ++     + M   + +LNV
Sbjct: 198 TAAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNV 257

Query: 266 SNAAAVALYIT 276
           + A+AVA +  
Sbjct: 258 AAASAVAFWEL 268


>gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3]
 gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3]
          Length = 265

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 76/261 (29%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +         +     L G   +  AL +      ++        +    
Sbjct: 6   KNNPKVKEAVALKHNRS--RKGPVFLLEGFREIQKALASGYE-CERIFCGTRISEKEQAF 62

Query: 85  ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            +     P++ V         +      +     +                     ++++
Sbjct: 63  LHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ G +  +P    +      
Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLPIWSATLDQVQQ 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +            E  N  + L+ G+E  GL         S   L M G 
Sbjct: 183 VILEEKWHAFVTSPRAHTMYF-CENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVVRQR 262


>gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 267

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 6/257 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    +     + G + V AA++  +     +  T+ A  R       
Sbjct: 14  PRIVNAAKLH-RAAARKKANQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFQDIVTA 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V    +  +    +          AL    L S          L+ V    ++P 
Sbjct: 71  CGYMDVYVHPITDKAARHLSDTATTTGLFALCKPVLWSAGKILNGKPNLVSVPVLTSEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L ++   
Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQLRKS 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  ++D +  L +   +   A + G E  GL  + QE A     + + G  ++LN+
Sbjct: 191 GMQILATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELQEEADMRVRIPILGRAESLNL 249

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ LY +     +
Sbjct: 250 ATAASICLYESAKALNR 266


>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL +V DP N G +LR A A  
Sbjct: 88  DVLADVSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAAG 147

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I T       +    +++ G+L H+P      +  A+Q +   G + +        
Sbjct: 148 ADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGAA 207

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 208 DLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267

Query: 275 ITQN-HF 280
            +     
Sbjct: 268 ASARAQR 274


>gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 248

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
                 F+ G H    AL       K+F     K                 + TVP   +
Sbjct: 2   KTENTDFIIGRHPAVMALKADQEINKVFVQAGLKADAIAEIIKLAKQKRLVISTVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++   +  HQG+AL  A      +D               ++LD + DPHN+G+I+R+A
Sbjct: 62  DQLTDHQ-NHQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPHNLGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GALEH+P  R++NL     K        +  + 
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNL-VQTVKELKNRGVWLFGTD 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +       +  +AL++G EGKG+    ++    M  + M G +++LN S AA + +Y
Sbjct: 180 MKGRDYRTWDAHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNASVAAGLLIY 239

Query: 275 ITQNHF 280
              N  
Sbjct: 240 QGFNSR 245


>gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 273

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     + +  ++           +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRHQVDAERGLFIAESPKVIQVALDKGCEPLALLCEHKHIAGDAAAIIARCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   +  + G       L     PLL    +  R ++ ++V+  V D  NIGA
Sbjct: 77  DLPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  +P+  + +   +L ++       
Sbjct: 137 IFRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPWTWLDDSIASLSRLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             ++A+++G EG GL  +T E A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDDPALAAEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWQLR 264


>gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 248

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106
           ++ G   +  AL         LLA       L  D           V TVP +T+D    
Sbjct: 4   YIEGKRPIIEALRTQVPIKRILLADNAKRDGLVEDILRKAKHFDVDVTTVPRKTLDDKS- 62

Query: 107 KEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +   HQG+  ET P     +           +      L+++LDH+ D  N+GAI RSA 
Sbjct: 63  ERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHLTDAGNLGAIARSAE 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++   + S    A   KS++GA+ H+P  ++ NL   + ++   GF   G S  
Sbjct: 123 AVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMARLKERGFWVAGASEQ 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   + +     KIAL++G E +GL    +E+   +  L   G + +LNV+ A+   +Y 
Sbjct: 183 TDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACMYE 242

Query: 276 TQNH 279
               
Sbjct: 243 WLRQ 246


>gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 285

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 6/257 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    + E   + G + V AA++  S     +  T+ A  R       
Sbjct: 33  PRIINAAKLH-RAASRRKAERFLIEGENAVDAAVSTGSATD--VFVTEKAAERFAHIVQT 89

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V    +  +    +          A+    L +         +L+ V    ++P 
Sbjct: 90  CGYMDVYVHPITDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVLTSEPG 149

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L K+ S 
Sbjct: 150 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSS 209

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  ++D +  L +   +   A + G E  GL  +  + A     + + G  ++LN+
Sbjct: 210 GMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNL 268

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ LY +     +
Sbjct: 269 ATAASICLYESVKQQNR 285


>gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 266

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 6/257 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    + E   + G + V AA++  S     +  T+ A  R       
Sbjct: 14  PRIINAAKLH-RAASRRKAERFLIEGENAVDAAVSTGSATD--VFVTEKAAERFAHIVQT 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V    +  +    +          A+    L +         +L+ V    ++P 
Sbjct: 71  CGYMDVYVHPITDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVLTSEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L K+ S 
Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSS 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  ++D +  L +   +   A + G E  GL  +  + A     + + G  ++LN+
Sbjct: 191 GMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNL 249

Query: 266 SNAAAVALYITQNHFAK 282
           + AA++ LY +     +
Sbjct: 250 ATAASICLYESVKQQNR 266


>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
 gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
          Length = 286

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 11/269 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALA 79
           +          +   +++    +       G   V  A  +       + +L AT +A  
Sbjct: 9   ISPRSSRVSAARRLARRN-FRGKDRLFLAEGPQAVREAAGHRHGGQATLVELFATLDAAE 67

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V     + I  I         + +                +L+ V
Sbjct: 68  RYADIIGEARTAGARVHLAADEVIADISTTVTPQGLVGVCRFLDTPFADILAARPRLVAV 127

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L HV DP N G +LR A A   D ++ T       +    +++ G+L H+P      +  
Sbjct: 128 LAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEQ 187

Query: 198 ALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A+  +   G + +        D    L+        A + G E  GL   T+  A ++  
Sbjct: 188 AVAGLKDAGVRILAADGAGEHDLDDELDDNTMGGPTAWVFGNEAWGLPEDTRALADAVVR 247

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281
           + + G+ ++LN++ AAAV LY +     A
Sbjct: 248 VPIHGMAESLNLATAAAVCLYASARAQRA 276


>gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 357

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 11/248 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96
            R   Q E+  + G ++V  AL    P+  ++       +   +           PV  V
Sbjct: 100 RRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVLEV 159

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
               +D+I G +AVHQGLAL+  P                    L++ LD + DP N+GA
Sbjct: 160 MRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQVPLMVALDGITDPRNLGA 219

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+ +   G   
Sbjct: 220 IIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGVFV 279

Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL       L +    +  I +++G+EGKGL     ET  ++  + +    ++LN   A
Sbjct: 280 VGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGASTESLNAGIA 339

Query: 269 AAVALYIT 276
           A+V LY  
Sbjct: 340 ASVTLYEI 347


>gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 251

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 13/247 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        V+ VP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      LD              L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVA-GGNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E      K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240

Query: 275 ITQNHFA 281
              N   
Sbjct: 241 QAYNSRN 247


>gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032]
 gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 247

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 96/266 (36%), Gaps = 31/266 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+  I   K  H                     +  ++     + G+H V  A
Sbjct: 1   MKYIESAKNTHIKQWKKLHTK-------------------KERTKTGLFLVEGIHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + + K   + +     + +D D        +  +  +    +   E      A+ T  
Sbjct: 42  LKSRAVKELMVTSPDKLPSHIDPD------IELYELSEEAFFAMTETETPQHIAAVCT-- 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +   +  + L++LD V DP N+G ++R+A A   D +I       + +    +SA
Sbjct: 94  ---VPVFEEKKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSA 150

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++ S                     ++ K  +        ALI+G EG G+
Sbjct: 151 QGSHFHLPILKQSLQQTIAACKEQGIPVYGSA-LNNAKAYKSVTAEGPFALIVGNEGGGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266
            P+  +      ++ M G  ++LNV+
Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLNVA 235


>gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
 gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
          Length = 248

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 12/248 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101
           +  +  + G H V+ AL + ++    LL      +       +A       V+ +  + +
Sbjct: 2   ERRDDLIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLVEAARAAGLKVEKIERRRL 61

Query: 102 DKIVGKEAVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           D++ G  AVHQG+AL             L   L+      L++V+DHV DPHN+GA+LRS
Sbjct: 62  DQMAG-GAVHQGVALRVAAQGRYAAWDELLAVLEEAGRRALVLVVDHVQDPHNLGAMLRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  K  +   +  +AK+A+GAL  +   R++N++ AL  +   G  ++   
Sbjct: 121 AAAAGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVANISQALAGLKEIGLWSVAAV 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +              +A+++G+E KG+ P  Q+    +A L +   +++LN S AA V L
Sbjct: 181 ARGGAAPWALDLRGPLAVVVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAGVML 240

Query: 274 YITQNHFA 281
                  +
Sbjct: 241 MEVVRQRS 248


>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 281

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL +V DP N G +LR A A  
Sbjct: 88  DVLADVSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAAG 147

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWGFQTIGLSS 214
            D +I T       +    +++ G+L H+P          +                 + 
Sbjct: 148 ADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGAD 207

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D    L+        A I G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 208 DLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267

Query: 275 ITQN-HF 280
            +     
Sbjct: 268 ASARAQR 274


>gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 273

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 95/248 (38%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     + +  ++           +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRHQVDAERGLFIAESPKVIQVALDKGCEPLALLCEHKHIAGDAAAIIARCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   +  + G       L     PLL    +  R ++ ++V+  V D  NIGA
Sbjct: 77  DLPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  +P+  + +   +L ++       
Sbjct: 137 IFRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPWTWLDDSIASLSRLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                             ++A+++G EG GL  +T E A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDDPALATEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWQLR 264


>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 282

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 91/266 (34%), Gaps = 9/266 (3%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +          +   +++    +       G   V  A       + +L AT  A  R  
Sbjct: 9   ISPRSPRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAGYGDMLV-ELFATVEAAERYA 66

Query: 83  WDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       V       I+ I         + +                +L+ VL H
Sbjct: 67  DIVGAAREVGARVHLAADAVIEDISTTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAH 126

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+ 
Sbjct: 127 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVA 186

Query: 201 KMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +      +  L+ E          A + G E  GL  +T+    ++  + +
Sbjct: 187 GLREAGVRVLAADGAGEDDLDTELDAGTMGGPTAWVFGNEAWGLPEETRALTDAVLRVPI 246

Query: 257 PGIIKALNVSNAAAVALYITQN-HFA 281
            G  ++LN++ AAAV LY +     A
Sbjct: 247 HGKAESLNLATAAAVCLYASARAQRA 272


>gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 295

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 20/277 (7%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L    R   +            +       G + V AA+     K  ++ A++ A     
Sbjct: 13  LTAQSRRVVEAAKLLSSP-GRRKAGEFLAEGPNNVRAAITTG--KALEIFASEAAAHEHS 69

Query: 83  WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNS 132
                      PV  V  +   K+         +A                   +   ++
Sbjct: 70  ELIAAAGEAGIPVCCVDDRAARKLTDAVTPVGLVARCALLDCSLPQALGPQDDWEKPGHA 129

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VL    DP N+G  LR+A AF     +         +   A+S++G+L  +P +R 
Sbjct: 130 PLVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRE 189

Query: 193 SNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  A    +            +D      + +     A + G E  GL     + A  
Sbjct: 190 RDVAAALGQLRDAGLLLFATTADADLPLDEAESLLQRPCAWLFGNEASGLPEPAAQAADR 249

Query: 251 MAHLHMPGI-----IKALNVSNAAAVALYITQNHFAK 282
              + M        I++LN++ AA + LY T    ++
Sbjct: 250 RIAVPMRPTPGFAPIESLNLAVAAGICLYETARQRSR 286


>gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
 gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
          Length = 263

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 17/245 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVP--PQTIDKIV 105
           ++ G   V  AL +    I ++L   N     ++         F V+ VP   + +D   
Sbjct: 4   YIEGKRPVIEALRS-EMPIRRVLIADNLKRDGQVADILRKARKFDVEVVPVPRKELDAKS 62

Query: 106 GKEAVHQGLALETAPLLSPTLDA-----------VRNSQLLMVLDHVNDPHNIGAILRSA 154
            +   HQG+  ET P    +                 + L++VLDH+ D  N+GAI RSA
Sbjct: 63  -ERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVLDHITDAGNLGAIARSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 GII   + S S +A   KS++G++ H+   +++NL   L+++   GF   G S 
Sbjct: 122 EVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAVLERLKKNGFWVAGASE 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   + +     KIAL++G EG G+    Q+    +  L   G + +LNV+ A+   +Y
Sbjct: 182 QAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEGKVGSLNVAQASTAVMY 241

Query: 275 ITQNH 279
                
Sbjct: 242 EWLRQ 246


>gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 273

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 6/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +              +  A       I  L+  ++   +           PV T     +
Sbjct: 29  YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G       L       L        +++ +++L++V +P N+GAI RSA A + D 
Sbjct: 89  KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------ 215
           I+ +K  S        + + G +  IP+  + + T     MH          +       
Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTARS 208

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                E  +  DK+A+ILG EG GL  +T +       + M   + +LNV+ A+AVA + 
Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268

Query: 276 TQNH 279
               
Sbjct: 269 LAKR 272


>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
 gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
 gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
 gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
          Length = 258

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 95/238 (39%), Gaps = 3/238 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETE-KLIFVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +         LA+ T         + +   LL+  D++ DP N+G ++R+A A    G
Sbjct: 82  NSLSELPTSQGILAIVTLETQQEQSLSFKGGWLLL--DNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +  + +S  G+  H+P ++                      +++     
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQRELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVLPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 249

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 11/238 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+H++S A        KIF     K           +    PV  VP + +D++    
Sbjct: 7   IFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTS-- 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    + +    LD +            L++LD + D  N GAI R+A     D 
Sbjct: 65  KNHQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +     
Sbjct: 125 IIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLYT 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y     
Sbjct: 185 DVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242


>gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 267

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 6/253 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++ +  + +   + G + V AA++  +     +  T+ A  R       
Sbjct: 14  PRIVNAAKLH-RAANRKKAKQFLIEGENAVDAAVSTGAAVD--VFVTEKAAERFGDIITA 70

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  +  +    +          AL    L S          L+ V    ++P 
Sbjct: 71  CGYMGVYVHPITDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I         S  +A++++G+L H+P  R  N+ D L ++   
Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKS 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  ++D +  L +   +   A + G E  GL  +  E A     + + G  ++LN+
Sbjct: 191 GMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNL 249

Query: 266 SNAAAVALYITQN 278
           + AA++ LY +  
Sbjct: 250 ATAASICLYESAK 262


>gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 267

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 6/253 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++ +  + +   + G + V AA++  +     +  T+ A  R       
Sbjct: 14  PRIVNAAKLH-RAANRKKAKQFLIEGENAVDAAVSTGAAVD--VFVTEKAAERFGDIITA 70

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  +  +    +          AL    L S          L+ V    ++P 
Sbjct: 71  CGYMGVYVHPITDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R++ A   DG+I         S  +A++++G+L H+P  R  N+ D L ++   
Sbjct: 131 NAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKS 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  ++D +  L +   +   A + G E  GL  +  E A     + + G  ++LN+
Sbjct: 191 GMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNL 249

Query: 266 SNAAAVALYITQN 278
           + AA++ LY +  
Sbjct: 250 ATAASICLYESAK 262


>gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 265

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 8/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +    +        +    D D
Sbjct: 6   KNNARVK--AALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLD 63

Query: 85  ANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L          P + ++++  KE     +A+             L         ++++
Sbjct: 64  KELTALGIEKLPCPKEILERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG+I         +  + +S+ GA+  +P  + S      
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQASLEEVLA 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S      +Q      +A++ G+E  GL P   + +     L M G 
Sbjct: 184 LVREQEWKIFTTTPSTQTFYFDQN-FCQPLAVVFGSEKDGLSPSWLDGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
             +LN+S++ A   Y      ++
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRSR 265


>gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 273

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 6/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +              +  A       I  L+  ++   +           PV T     +
Sbjct: 29  YEPDLGIFIAESPKVIQTAFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVL 88

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G       L       L        +++ +++L++V +P N+GAI RSA A + D 
Sbjct: 89  KQLTGFGLTRGMLCAMRRKPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------SWGFQTIGLSSD 215
           I+ +K  S        + + G +  IP+  + + T     M+                  
Sbjct: 149 ILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMYRLKELGYKNVAMALTDRS 208

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                E  +  DK+A+ILG EG GL  +T +       + M   + +LNV+ A+AVA + 
Sbjct: 209 VSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQ 268

Query: 276 TQNH 279
               
Sbjct: 269 LAKR 272


>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
 gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
 gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
 gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
 gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
 gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
 gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
 gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
 gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
 gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
          Length = 290

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 20/281 (7%)

Query: 19  HYAKLRRNHRDYK-----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
                + +++ +K     K+   + +++        F YG+H VS  +     ++  L  
Sbjct: 2   KKRSQKTDNQSFKSSSKEKLNKPHHQAKPAKPKNPYF-YGIHAVSMLIKRRPEEVLGLFI 60

Query: 74  T------KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125
                   ++  +L   +       ++    + + ++ G +     +A            
Sbjct: 61  QLRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQHQGVVALARTAPMADETI 120

Query: 126 LDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           LD   +++  L +VLD + D HN+GA LR+A A   D +I  +  S   +  +AK + GA
Sbjct: 121 LDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPITPTVAKVSVGA 180

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
            E IP I ++NL   L+KM   G    G + D       E     K+A+I+G+EG G+R 
Sbjct: 181 SEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGGKVAIIMGSEGDGMRR 240

Query: 243 KTQETATSMAHLHMPGIIK---ALNVSNAAAVALYITQNHF 280
            TQ    ++ ++ M  ++    +LNVS A  + LY      
Sbjct: 241 LTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281


>gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5]
 gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
          Length = 371

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L    P+  ++       +   +            +  
Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIIRTAADRGIAILE 176

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           V    +D++ G   +HQG+ L+  P      D        + + LL+ LD V DP N+GA
Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  
Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L         + +++G+EG+GL     ET      + M   +++LN S A
Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355

Query: 269 AAVALYITQNHFA 281
           AAV L       +
Sbjct: 356 AAVTLAEVARRRS 368


>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 442

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 18/288 (6%)

Query: 8   KSEKIFS-LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAALN 62
           ++ +     +     +  R    Y +  S   +            N  ++G+H   A L 
Sbjct: 105 RNNRFDRGARSDRTDRGGRPAPRYGRPPSDANREPEAESLTPPEHNDLVWGLHASQAILE 164

Query: 63  NPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +  R I ++  T     R                V+ V    + ++ G  AVHQG+ L+T
Sbjct: 165 S-ERPIHRIWCTPELRFRSRFLQLLREAKSSGVLVEEVTWARLAQLCG-GAVHQGIVLQT 222

Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A   +  L+ + +S        LLM +D + DPHN+GAI+RSA A    G++  +R S  
Sbjct: 223 AAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHGLVLPQRRSAG 282

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK A+GALEH+P  R+ NL  +L+++   G++ +GL+ +    L +   +  + +
Sbjct: 283 LTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVGLAEEGSATLAEADLDGPLVV 342

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + G+EG+GL   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 343 VTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATALLLYEVARR 390


>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
           ATCC 35405]
          Length = 258

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 24/252 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99
            + G H +   L     KI +            + +    +   +A       ++    Q
Sbjct: 4   IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKKDNQ 63

Query: 100 TIDKIVG----KEAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHN 146
            +D +      +   H+G+ L T         +V              +++LD V DPHN
Sbjct: 64  FLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKLAEKGSAFVVILDSVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+I+RSA  F  DGII  +  S     +++K ++GAL  +P++ ++NL   ++++   G
Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +   K L       K  LI+G EG+G+    +ET   +  +   G + +LNVS
Sbjct: 184 FWIYGADAG-GKALPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242

Query: 267 NAAAVALYITQN 278
            AA + LY    
Sbjct: 243 VAAGILLYEISR 254


>gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 249

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 11/238 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+H++S A        KIF     K           +    PV  VP + +D++    
Sbjct: 7   IFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTS-- 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    + +    LD +            L++LD + D  N GAI R+A     D 
Sbjct: 65  KNHQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +     
Sbjct: 125 IIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLYT 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y     
Sbjct: 185 DVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242


>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
          Length = 536

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57
           S+++S++    + S   + R   R     +     S    + E          L+G H  
Sbjct: 128 SRRRSDERLGRRPSLGERSRPADRLLSSKRLDPSTSDRVPEAEAFGPAAADDLLWGRHAS 187

Query: 58  SAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113
            AAL    R I ++  T +     R              V+ V    + ++ G  AVHQG
Sbjct: 188 QAALEAG-RPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 245

Query: 114 LALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           + L+TA   +  L ++           LL+ LD + DPHN+GAI+RSA A    G++  +
Sbjct: 246 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 305

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ +    L     +
Sbjct: 306 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 365

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + ++ G+E +G+   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 366 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 418


>gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
 gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
          Length = 339

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 14/269 (5%)

Query: 27  HRDYKKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNN--PSRKIFQ-LLATKNALARL 81
           +           +    +  + E   + G ++V  AL    P++ ++       +   R 
Sbjct: 69  NPRSGAGTRGTSRPARRTPGKGEAEQVAGRNSVVEALRAHVPAKALYIAQYIDSDDRVRE 128

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQL 134
                     P+   P   +D++     +HQG+ L   P      D          ++ L
Sbjct: 129 SMRLATELGVPLLEAPRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPL 187

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
              LD V DP N+GA++RS  AF   G+I  +R +   +A   K+A+GA   +P  R  N
Sbjct: 188 FAALDGVTDPRNLGAVMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGN 247

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           LT AL+     G    GL++D   P  E EI  + + L++G+EGKG+     E       
Sbjct: 248 LTRALEAYKKQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVS 307

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +    ++LN   AA +ALY      A+
Sbjct: 308 IPIASTTESLNAGVAAGIALYEVNRRRAE 336


>gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
 gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
          Length = 224

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 8/228 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           GV++++ AL      + ++   ++   R+           V  V  + + KI    +   
Sbjct: 5   GVNSIAEALKAG--VVNKIYVGEHINPRVAKILAEAKKQKVPIVKVKNLKKIEADVSP-- 60

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              ++          A+R +  ++ LD V DP N+GA+LR+A  F C G++  KR +   
Sbjct: 61  ---VKYYDFDFVVEKALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKRRAAQV 117

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + + + GA  H+   R+ NL ++++K+  +GF  +G      K L        +AL+
Sbjct: 118 TETVVEVSQGAAFHLKISRVENLANSIKKIKKYGFLVVGA-EIGGKDLRSVKFTPPLALV 176

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G E +G+    ++    +  +   G   +LN+S AA + LY  + H 
Sbjct: 177 VGGEDRGISQPVKKMCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224


>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 279

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 22/273 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K++    + SR         L G+H V A       K  +L+A+++     + 
Sbjct: 6   SRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALG--KPEKLVASESGRENPEI 63

Query: 84  DANLPHPFPVKTVPP--------------QTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
              L     V  V                  + + V       GL           +   
Sbjct: 64  RFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIPLK 123

Query: 130 RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  Q     ++L+ + DP N+G+ILRSA A     +  +   + + S    ++A GA   
Sbjct: 124 KRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAHFL 183

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     +NL    +   ++G + I    D+KK L Q   +  +A + G EG GL  +  +
Sbjct: 184 VRIHERANL---AEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ 240

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + MPG  ++LN + AAAV  +     
Sbjct: 241 VAHERITIPMPGDAESLNAAAAAAVCFFERVRQ 273


>gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301]
 gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC]
          Length = 269

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 8/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +  R          A   +  D
Sbjct: 6   KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L              ++K+  KE     +A+             L     +   ++++
Sbjct: 64  RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG+I         +  + +S+ G +  +P  + S      
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S      +Q+     + ++ G+E  GL P     +     L M G 
Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LN+S++ A   Y      +
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264


>gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 106/274 (38%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R                      ++  + G H    A
Sbjct: 1   MTIITSKSNNLIKKTKKLLKKKYR---------------------EQSYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  +  +   ++   R++  +N      V  V P+ + ++       QG+  E A 
Sbjct: 40  EKANAEFLN-IFVLEDFADRVEHMSN------VTFVTPEVLKELTD-SKTPQGIIAEVAM 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            + P  +      L++  + V DP N+G ++R+A A   DG++ + + +   +    +S 
Sbjct: 92  PILPLANLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R +         +          S      +    +   AL++G EG G+
Sbjct: 150 QGSHFHLPVWRTNVYEACETLQNLGVPIIATTLSKDSVDYKTVKHDGNFALVMGNEGNGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K    A  +AH+ MPG  ++LNV+ A  + L+
Sbjct: 210 SNKMTNQADVLAHIIMPGQAESLNVAVATGIVLF 243


>gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri
           NRRL B-30929]
          Length = 266

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 16/256 (6%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----KNALARLDWDANLPHPF 91
           ++      QPE   + G H V AAL +    + +L         + +             
Sbjct: 10  HRSDDSQDQPEEFVI-GRHPVVAALKS-ENPVNKLFIQSGIKDDDNIISEIMKLAHKKRL 67

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
            +  VP Q +DK+   +  HQG+ L  A     T+D               ++LD++ DP
Sbjct: 68  VISKVPKQKLDKLSNNQ-NHQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFVILDNIEDP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+I+R+A A    GII  K  +   +A ++K+++GA+E +P  R++NL+  ++++  
Sbjct: 127 HNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLSATIKELKQ 186

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G           + K   IA+I+G EGKG+ P  ++    M  + M G I++LN
Sbjct: 187 RGMWVFGTDVSGTDYRRWDAK-GSIAVIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLN 245

Query: 265 VSNAAAVALYITQNHF 280
            S AA++ +Y   N  
Sbjct: 246 ASVAASILIYQGFNSR 261


>gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 269

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 8/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +  R          A   +  D
Sbjct: 6   KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L              ++K+  KE     +A+             L     +   ++++
Sbjct: 64  RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG+I         +  + +S+ G +  +P  + S      
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                       + S      +Q+     + ++ G+E  GL P     +     L M G 
Sbjct: 184 LVHQQEWQVFTTIPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LN+S++ A   Y      +
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264


>gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 251

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98
            T++  + F+ G H   AAL +  ++I ++   K                    +  VP 
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
             +D++   +  HQG+AL  A     T+D               ++LD + DPHN+G+IL
Sbjct: 61  TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    G
Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                      + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA++
Sbjct: 180 TDMQGTDCRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238

Query: 272 ALYI--TQNH 279
            +Y      H
Sbjct: 239 LIYQGFATRH 248


>gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 269

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 8/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +  R          A   +  D
Sbjct: 6   KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L              ++K+  KE     +A+             L     +   ++++
Sbjct: 64  RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG I         +  + +S+ G +  +P  + S      
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S      +Q+     + ++ G+E  GL P     +     L M G 
Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LN+S++ A   Y      +
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264


>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAV-HQG 113
             AAL NP+R    +L T   L +    A +        K V  + I KI+G   + HQG
Sbjct: 2   CIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQG 61

Query: 114 LALETAPLLSPTLDAVRNSQLL----------MVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +AL    L       +R   ++          ++LD V D +N+GAI+RSA  F  D +I
Sbjct: 62  IALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ +   K L + 
Sbjct: 122 LPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEI 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY +    
Sbjct: 182 SFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQL 238


>gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
 gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
          Length = 251

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        V+ VP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       DA      L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E      K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240

Query: 275 ITQNHFA 281
              N   
Sbjct: 241 QAYNSRN 247


>gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel]
 gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 249

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 131/239 (54%), Gaps = 10/239 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100
            + +++YG H   AAL N +RK  +LL T+N +          + +       K V   T
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNINT 62

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           I+ ++   + HQG+AL+ + + + +++            +++LD V D +N+G+I+RSAV
Sbjct: 63  INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  + 
Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241


>gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 245

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 10/231 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +  + G H    A  +  +    +   +    R+           V  V    + +
Sbjct: 22  HRQHSYLIEGWHLFEEAQQSG-QGFRHIFVLEELAERVADQE------KVVLVSADVLKE 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    +    +A    P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 75  LTDSPSPQGIIAEVDMPQLAFPTDYQGKY---LILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +++ +   ++   +S  G+  H+P  R        +             S      +  
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWRTDIYKICREMQEHNTPVLATTLSKVSVDYKTV 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 PHQESFALVMGNEGQGISAEMTILADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 236

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 13/247 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K  +  +QK ++        + G H    A+      I ++ A +N   +L        
Sbjct: 2   VKNAKKLHQK-KYRKSA--YLIEGWHLFEEAVQAGVT-IEKIFALENYRNQLAA------ 51

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            FP      + I   +      QG+            D  +   L +  + V DP N+G 
Sbjct: 52  -FPQTVWISEDILLDLADSQTPQGIVAVVQKEEVGQADLSQGKFLFL--EDVQDPGNVGT 108

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I + + +   S    +S  G+  H+P  R+++     +         
Sbjct: 109 IIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVL 168

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S       +    +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228

Query: 270 AVALYIT 276
            + ++  
Sbjct: 229 GILIFYL 235


>gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
 gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
          Length = 242

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 5/236 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +  ++ G + +   L++   +I +    K     L           +K    Q +  +V
Sbjct: 2   QKKYWIMGKNCIETILDHSPERIIEFFTAKKDSDPLLEKV-RSKGIKIKLASKQKLFDLV 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             ++ HQ        + SP L      N +L+++LD++NDP N+GAILR+A  F  D +I
Sbjct: 61  NSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAILRAAECFGVDAVI 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            +K    S +   AK+  GA E +P I +SN      +   S  F      SD   PL  
Sbjct: 120 WSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAVTAEISDRASPLNA 179

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +K  LI+G+EGKG++P   + A    ++ M G I +LNVS A AV L   Q 
Sbjct: 180 FQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQATAVLLSHYQK 235


>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
          Length = 442

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 17/287 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLFLYGVHTVSAALN 62
             + E+  S   ++  K  +    YK+ ++    +     +    +  ++G H+  AAL 
Sbjct: 132 SNRFER-KSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLSDDLIWGRHSTEAAL- 189

Query: 63  NPSRKIFQLLATKNAL--ARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
              R I ++  T       +              V+ V    + ++    AVHQG+ L+ 
Sbjct: 190 VGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLT-NGAVHQGIVLQI 248

Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A   +  L  + ++        LL+ LD + DP N+GAI+RSA A    G+I  +R S  
Sbjct: 249 AASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAG 308

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    L +      + +
Sbjct: 309 LTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVV 368

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++G+E KG+   T+     +  + + G+  +LN S A ++ LY    
Sbjct: 369 VVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 415


>gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           crispatus ST1]
 gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus ST1]
          Length = 251

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        V+ VP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       DA      L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGI+  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E      K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWN-AQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240

Query: 275 ITQNHFA 281
              N   
Sbjct: 241 QAYNSRN 247


>gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 248

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 5/236 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT++A AR            V  V  +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARFAALLAGA---DVHLVTERAAK 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P +S       + +L+ V    ++P N G ++R A A   D +
Sbjct: 68  ALSDTVTPVGLVAVCRMPEVSLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G++  +  +   +    +  +H  G   +    D +  L+ 
Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATMLDGEVSLDD 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   A + GAE  GL P     A +   + M G  ++LNV+ AAA+ LY +  
Sbjct: 188 AELSGPTAWLFGAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSAR 243


>gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 290

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 20/265 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     ++R               ++ AL    + I  L+         D  A +  
Sbjct: 17  YTNLTELQLRNRLEPSKGIFIAESPKVITRALAAGRQPISLLVEEPWIEGMADIFAFIDE 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + +I G       LA      L    +   N+  + VL+++ D  
Sbjct: 77  HWGDDIPVYVASPEQLRRITGYRLHRGALAAMHRWELPTVAEVCANATRIAVLENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A   D ++ T   S        + + G +  +P+ RI             
Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQGL 196

Query: 206 GFQTIGLSSD----------------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                   +                  +         DK+ALI G EG GL   T   A 
Sbjct: 197 EELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANAD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M   + +LNV+ ++AVA Y
Sbjct: 257 LTVKIPMSHDVDSLNVAASSAVAFY 281


>gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 251

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 12/241 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTIDKIVG 106
           G H V A L +    + +L        R D        A       ++    + ++K  G
Sbjct: 9   GFHAVEALLRHRPEAVLELFVQDTRADRDDPRLAALMQAAKDFGIAIQRARREVLEKHAG 68

Query: 107 KEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +             L        LD      LL+VL++V DPHN+GA LRSA A     
Sbjct: 69  PQNQGIVARARPRRPLDESALLQWLDGKPAKPLLLVLENVTDPHNLGACLRSADAAGVQA 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPL 220
           +I  +R +   + V  ++A GA E + Y  I NL   L +      +       +  + L
Sbjct: 129 VIVPRRNAAGLTPVACRTAVGAAESLAYYEIGNLASLLDQLRDRGVWVVGTALEERSESL 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + +A+++GAEG GL+  T++    +  + M G +++LNVS A  V L+  +   
Sbjct: 189 FTFQAPESLAVVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248

Query: 281 A 281
           +
Sbjct: 249 S 249


>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
           1279]
 gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
           1279]
          Length = 238

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V  AL     ++ Q+   +   A L  + +       +TVP   +D++V +  
Sbjct: 2   LIYGRNPVLEALREG--RVEQVWVARGVEAWLLKELDKL-GASYQTVPRIQLDQMV-RTT 57

Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQGL  E   L    L+             LL+VLD + DP N GAI+RSA A    G+
Sbjct: 58  QHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRNYGAIIRSAFALGAHGV 117

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +T +R S   SA++ K+++G    IP +++ N+   L+++   G    G S  + K + +
Sbjct: 118 VTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQGIWVYGTSGKASKTIAE 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFA 281
                 +AL++G+EG+G+R    E    +A + +    ++LN + A  V LY    N   
Sbjct: 178 LDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAAVALGVVLYQAGINRRP 237

Query: 282 K 282
           K
Sbjct: 238 K 238


>gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 248

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
               N F+ G H    AL +     K+F     K+                +  VP   +
Sbjct: 2   KTESNDFIIGRHPAVMALKSDQEINKVFIQSGLKSDAISQIIKLAKEKRLVISNVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++   +  HQG+AL  A     T+D               ++LD + DPHN+G+I+R+A
Sbjct: 62  DQMSDHQ-NHQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPHNLGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GA+EH+P  R++NL     +        +  + 
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNL-VQTAQELKDRGVWLFGTD 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +      +AL++G EGKG+    ++    M  + M G +++LN S AA++ +Y
Sbjct: 180 MKGTDYRRWNAKGAVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNASVAASLLIY 239

Query: 275 ITQNHF 280
              N  
Sbjct: 240 QGFNSR 245


>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 10/241 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
             +   +     + G H +  AL      + +LL  ++      WD N     P+  +  
Sbjct: 6   NKKERIKTNTFMIEGFHLIEEALKVDG-VVEELLVVEDITLPKSWDVN----VPMTLLKR 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               ++   E      A+      +  L+        ++LD V DP NIG ++R+A A  
Sbjct: 61  GIEKELTDTEQPQGVFAICRQLNQNVELEGTAY----LLLDGVQDPGNIGTMIRTADAAG 116

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG+I  +      +  + +SA G+  H+P +  + +    +   +           + +
Sbjct: 117 FDGVIMGEGTVDPYNPKVLRSAQGSHFHLPIVNKNLVEVVQELHDNGFDVFGTS-LQNGE 175

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + +   K ALI+G EG G++       T   ++ + G  ++LNV+ AA V +Y  Q 
Sbjct: 176 DYREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAAGVLMYWGQQ 235

Query: 279 H 279
            
Sbjct: 236 Q 236


>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 263

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 5/232 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    +   ++ L+G H V AAL NP R+  +L AT+  +A LD +  LP  FPV+    
Sbjct: 21  RGSGRASAGHVRLWGRHAVEAALKNPDRQHRKLWATREGVASLDGE--LPPDFPVEYADV 78

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155
           Q + ++V K+A HQGL LE A L    LD V     ++ ++VLD V DPHN+GAI+RSAV
Sbjct: 79  QDLARLVAKDAPHQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAV 138

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF+   ++T  R++P E  V+ KSASGALE +P+IR+ NL  A+++M   G+  IGL+  
Sbjct: 139 AFNAAALVTQDRHAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGH 198

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +     + +    +A++LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 199 TDTTFAEALPAGPVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250


>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
 gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040]
          Length = 262

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E ++L+G+H V  AL NP R+  +L+ T NA  +L  DA        + V P+     +
Sbjct: 24  SETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKL-EDAIATSGITPEVVDPRKFSVPI 82

Query: 106 GKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              +VHQG ALE  PL    L+          +++LD V DPHN+GAILRSA       +
Sbjct: 83  DPGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAV 142

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I T+ +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+
Sbjct: 143 IGTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEE 202

Query: 223 E---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY +  
Sbjct: 203 AVAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLK 261


>gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
 gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           ++F +   ++                V+    Q +D+ V        +A           
Sbjct: 5   EVFVMKGREDRRLLPLLQQLEEGGIRVQVAQRQWLDEKVEGAVHQGIVARVKPGRQYQEN 64

Query: 127 DAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           D         +   L++LD V DPHN+GA LRSA A   D +I  +  S   +A   K A
Sbjct: 65  DLPDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGIDAVIVPRDRSAQLNATAKKVA 124

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA E +P IR++NL   ++ +       IG + ++   L Q      +AL++GAEG G+
Sbjct: 125 CGAAESVPLIRVTNLARTMRLLQEENIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDGM 184

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 185 RRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 225


>gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22]
          Length = 242

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             + ++YG H V +A+NNP R+I  +L TK      D +  L      + V    + K++
Sbjct: 9   KNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL 65

Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +      A            +D  +    +++LD + D  NIGAI+RSA AF  + II
Sbjct: 66  KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 125

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  +K+    +
Sbjct: 126 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDK 185

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  +    +F
Sbjct: 186 LISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 242


>gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+     LD +  L      + V  
Sbjct: 7   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREI---LDTNKKLIGTRSYEIVNN 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++G +     +A            LD       + +LD + D  NIGAI+RSA A
Sbjct: 64  DILSKLLGNQTHQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQNIGAIIRSAAA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  K  SP+ES  +AK+A G LE I  I+++NL   +  +   GF  IGL+  +
Sbjct: 124 FDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHGFWIIGLTGSA 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DK+AL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 184 HDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVSNAASIIFH 241


>gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus
           profundus DSM 14977]
 gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus
           profundus DSM 14977]
          Length = 237

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V  A       + ++L  +    +           P + VP   +D++V +  
Sbjct: 2   WIYGRNPVLEAAREGG--VRRVLVARGVERKFLKKLEDA-GIPYELVPRIELDQLV-RTT 57

Query: 110 VHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+  E   +     D             L+++LD + DP N GAILRSA A    G+
Sbjct: 58  HHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHGV 117

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           ++  R S   S V  K+++GA  H+P +++ NL   ++++   G    GL+ + +  LE+
Sbjct: 118 VSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVALEE 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 +A ++G+EG GLR   ++    + H+ + G   +LN + AA +A++  
Sbjct: 178 ADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWA 231


>gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 252

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        ++TVP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALAKKKRLVIQTVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V +   HQGL L  +      LD              L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLV-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGVDYREWNAK-GKAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAYNSR 246


>gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5]
 gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum
           indicum S5]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 6/227 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           GV++V  AL   S  I ++  +++        A   H  P+K +    +D   G+     
Sbjct: 5   GVNSVREALRCGSN-IEKIFLSRSLPD--IETAAREHDIPIKILNRDKMDSQFGQHNQGV 61

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G  +         L  + ++  +++ D V DP N+GAI+RSA AF  D +IT   +  + 
Sbjct: 62  GAIVGAIATQ-DPLTFLVDASCIVLADRVQDPGNLGAIIRSAAAFGADVVITE--HQSAP 118

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
            +     AS    +   +          +                + L +   + KI L+
Sbjct: 119 ISDTVIKASAGNIYHTRVGRVVNAARYVEKAKENGFWTVALDGEGESLFRLKLDGKILLM 178

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +G EG GL+      A   A + M   +++LN S A A+ALY     
Sbjct: 179 VGNEGSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225


>gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
 gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
          Length = 348

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 93/244 (38%), Positives = 130/244 (53%), Gaps = 10/244 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKT 95
             K         L+L+G H V AAL NP RK          LA       LP   P V+ 
Sbjct: 104 RGKRPGGRGDGGLWLFGRHAVEAALQNPERK------ALRLLALAGAAEGLPKGGPTVEP 157

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILR 152
              + I+ +V   AVHQGLAL+ APL  PT++    +    ++ +LD V+DPHNIGA+LR
Sbjct: 158 ADREAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLR 217

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF    ++   R+SP E+  LAKSASG LE +P +R  NL+ AL      GF   GL
Sbjct: 218 SAAAFGIRAVVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGL 277

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + ++  L +    ++  ++LG+EG GLR   ++    +  L M   +++LNVSNAAAV 
Sbjct: 278 DASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVT 337

Query: 273 LYIT 276
            Y  
Sbjct: 338 FYEL 341


>gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++G   +  A+      I ++   K     L  + N            VP + ++K+  +
Sbjct: 7   IFGTRAIIEAIQAGKE-IDKVFLQKGLHNPLLSELNTLIKKKGVQTSHVPIEKLNKLTQQ 65

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     + +     +           + L ++LD ++D  N GAI+R+A      
Sbjct: 66  --NHQGAIAVVSAISFYDFEELVNAVVETEAAPLFILLDQLSDVRNFGAIIRTAECTGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+     + V  K+++GA  +IP  ++ ++ DA+  +   G Q +  +  ++  L
Sbjct: 124 GIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVDHIKDAIYYLQGSGVQVVAATEKTETTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +       A+++G E  G+ P   +     A L + G I +LNVS A    LY      
Sbjct: 184 FETDFTSPTAIVMGREDSGVSPGVLKIVDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 255

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A          +   ++ + R+           V  V P+ + ++
Sbjct: 33  RTDSYLIEGWHLFEEA-KKAQASFLHIFVVEDCVDRV------ATDDKVIVVTPEVLKEL 85

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E            +   LL+  + V DP N+G ++R+A A   DG++ 
Sbjct: 86  TDSP-TPQGIVAEVKQEKPDLPSIGKGKYLLL--EDVQDPGNLGTMIRTADAAGFDGVLL 142

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  HIP  R                      SD     +Q  
Sbjct: 143 SEKSADVFNQKTLRSMQGSHYHIPVWRTDVYAFCRTMKTKEMPILATTLSDQSIDYKQVG 202

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 L++G EG+G+ PK  E ++ + H+ MPG  ++LNV+ AA + ++
Sbjct: 203 TLTDFILVMGNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGILIF 252


>gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 371

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L    P+  ++       +   +            +  
Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIVRTAADRGIAILE 176

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           V    +D++ G   +HQG+ L+  P      D        + + LL+ LD V DP N+GA
Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  
Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L         + +++G+EG+GL     ET      + M   +++LN S A
Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355

Query: 269 AAVALYITQNHFA 281
           AAV L       +
Sbjct: 356 AAVTLAEVARRRS 368


>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
 gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 15/249 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +PE    YGVH+V + L     ++  L       +   +   +   P    V+      +
Sbjct: 3   KPEYF--YGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDRL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +K+ G    HQG+     P           L     + LL+ LD V DPHN+GA +R+A 
Sbjct: 61  EKMAGLP-FHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTAA 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   + +I  +  S S +    K A+G  E + +I+++NL   L ++       +  +  
Sbjct: 120 AMGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTML 179

Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +K L  +  +     + +++GAE  GLRP TQ       ++ M G +++LNVS A  +A
Sbjct: 180 DEKALPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMA 239

Query: 273 LYITQNHFA 281
           LY       
Sbjct: 240 LYEACRQRN 248


>gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
          Length = 251

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98
            T++  + F+ G H   AAL +  ++I ++   K                    +  VP 
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
             +D++   +  HQG+AL  A     T+D               ++LD + DPHN+G+IL
Sbjct: 61  TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    G
Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                      + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA++
Sbjct: 180 TDMQGTDYRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238

Query: 272 ALYI--TQNH 279
            +Y      H
Sbjct: 239 LIYQGFATRH 248


>gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 131/239 (54%), Gaps = 10/239 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100
            + +++YG H   AAL N +RK  +LL T+N +          + +       K V   T
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNLNT 62

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           I+ ++   + HQG+AL+ + + + +++            +++LD V D +N+G+I+RSAV
Sbjct: 63  INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  + 
Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241


>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 268

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 15/267 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
           +RN++  K+     Q+     + +  F+YG H    AL     +I ++        +   
Sbjct: 3   QRNNK--KQAGGKRQQHEPQGENQAEFVYGHHAAVEALK-GQTEINKVWLQTGLADKARN 59

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133
                       ++  P   +D++   E  HQG+ L  A     T+D           + 
Sbjct: 60  ELASLAKKRGLVMQDAPKAKLDELTNGE-NHQGVVLSIAAYAYVTIDDLFAKAAEKDEAP 118

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VLD + DPHN+G+I+R+A A    GII  KR +   ++V+AK+++GA+EH+P  R++
Sbjct: 119 FFLVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVT 178

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G    G   +       +      ALI+G EGKG+ P  +++      
Sbjct: 179 NLVQTVEQLKERGVWVFGTDMNGNDYRRWD-ATGATALIIGNEGKGISPLLKKSVDETLT 237

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G +++LN S AA++ +Y   N  
Sbjct: 238 IPMIGHVQSLNASVAASLLIYQGYNSR 264


>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
 gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 17/249 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N++  K+     QK +   +     + G H V  A    +  + +L   +     + ++ 
Sbjct: 6   NNKKIKEYAKLIQK-KERDKTNLFLVEGEHMVKEA--YNANALQELFILEGIECPIQFN- 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                   +TV  Q ++K+  + +  + + +     L P  +       +++LD+V DP 
Sbjct: 62  -------YETVTQQVLNKLSNQNSNSKMIGVCKKLNLKPVKEEN-----ILLLDNVQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A +F  D I  +K  +   +    +S+ GAL +IP I+   + +  +     
Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQTDLVEEIKKLQERN 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    D  K L+    + K A+++G EG+G+R +  + +  +  + M    ++LNV
Sbjct: 170 IEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEM-ETFESLNV 228

Query: 266 SNAAAVALY 274
           + A ++ +Y
Sbjct: 229 AIATSICMY 237


>gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO]
 gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae
           TMO]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 7/231 (3%)

Query: 50  FLYGVHTVSAA--LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            +YG   +     +  P +KI+ L  + N   +   +    + +       + ++K+ G+
Sbjct: 2   IVYGKSVLDEIVRIRYPVKKIY-LRESNNEKFQEIEEILKKNGYHYIKTSAKHLEKLCGE 60

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           E     +        +   +   +   +++LDH+ DPHN+GAI+R+ V      I+ TK 
Sbjct: 61  EKNQGIV---IDLDFNYADETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVSAIVITKD 117

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K ++G +  IP + ++N+   ++K+       +  +  + K L +E    
Sbjct: 118 RSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKL-KNKGYWVYGADMNGKNLYEEGFIS 176

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +A++ G EG+GL    +E    +  + M   I +LNVS +A + L+    
Sbjct: 177 PVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISR 227


>gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           C231]
          Length = 289

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    + +     G ++V AA++  +     +  T+ A  +            +   P 
Sbjct: 39  RTAGRKKADRFLAEGENSVEAAVSTGAATD--VFVTETAAQKFVDVITAAKHMGIYVHPI 96

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                    + V+          +   + +      +L+ V    ++P N G ++R A A
Sbjct: 97  TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 156

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II        +     +S++G+L HIP +R  NL      + + G + +  ++  
Sbjct: 157 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 216

Query: 217 KKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+    + +   A ++G E  GL     E A     + + G  ++LN++ AA+V LY
Sbjct: 217 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 276

Query: 275 ITQN 278
            +  
Sbjct: 277 ESSK 280


>gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 285

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 95/244 (38%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    + +     G ++V AA++  +     +  T+ A  +            +   P 
Sbjct: 35  RTAGRKKADRFLAEGENSVEAAVSTGAATD--VFVTETAAQKFVDVITAAKHMGIYVHPI 92

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                    + V+          +   + +      +L+ V    ++P N G ++R A A
Sbjct: 93  TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 152

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II        +     +S++G+L HIP +R  NL      + + G + +  ++  
Sbjct: 153 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 212

Query: 217 KKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+    + +   A ++G E  GL     E A     + + G  ++LN++ AA+V LY
Sbjct: 213 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 272

Query: 275 ITQN 278
            +  
Sbjct: 273 ESSK 276


>gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 258

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
               YG H V A L     +  ++L ++    +L  D       +  PV  V  +T+D++
Sbjct: 7   EDICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRV 66

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G  + HQG+    +      ++         +++ L++V D + DP+N+GAI+RSA  F
Sbjct: 67  SGGAS-HQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVF 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   S+ + KS++GA   +  + +SNL  A++++   G   +GL   + 
Sbjct: 126 GALGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRAD 185

Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + L  E     K+ L++G+E  G+ P        +  + M G   +LN + AA++ +Y  
Sbjct: 186 RYLWDEPSIRGKLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYEW 245

Query: 277 Q 277
            
Sbjct: 246 M 246


>gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 269

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 38  QKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPV 93
            +++H    +    +YG   V  AL+NP   I +LL   NA      +           V
Sbjct: 4   NQTKHPR--DKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHV 141
               P+ I +I       QG+ ++  P     L                 +   + LD V
Sbjct: 62  SRESPKYITRISRNGRHDQGVVVDVIPPAMEALSTYLERQQSHPPNQKPQTHKFLALDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+R+ +A   DGII  ++  P  + ++ K+++G   +   +R + L+DALQ+
Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDALQQ 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    +   GLS  +   L     +     +LG E +G+         +   + +    +
Sbjct: 182 LRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEFPAE 241

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV++AAAV  +  +  
Sbjct: 242 SLNVASAAAVVCFELKRQ 259


>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 18/253 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++    QK ++  + +   + G H +  A     RK   +L     L+    + 
Sbjct: 6   QNETIKEIVKLKQK-KYRDEKKMFLIEGFHLIEEA-----RKKHSILQIITTLSDDFEEE 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L        V    ++K+    +    +A+      S  ++  +   LL   D V DP 
Sbjct: 60  TL-------HVSQNVMNKLAFTRSPQPIMAICRQNNHSLIVEDGQRYLLL---DRVQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A+AF  D +I ++      +  + ++  GAL     + + NL DA+  +   
Sbjct: 110 NVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALF-QMNVCVMNLKDAIVFLKHQ 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G        +E     DK+A ++G EG+G+  +  E      ++ +   +++LNV
Sbjct: 169 GVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELCQHRLYIPIQ-TVESLNV 227

Query: 266 SNAAAVALYITQN 278
             A+A+ +Y  Q 
Sbjct: 228 GIASAITMYHFQK 240


>gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 260

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 3/252 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   ++M+   +   +        + G   V+AAL+   R++ Q++   +A        
Sbjct: 8   RNPRIQRMRRLLRDRGYRYDEAAYVVEGPALVAAALDAG-RQVRQVVVPASASDHHVMHR 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     VP    + +    +       E A      +D    +  L+VL  V+DP 
Sbjct: 67  AGWSGAATLVVPDGVFEGLSSTRSPQP-ALAEVAFHDVEPMDLATTTGPLLVLAEVSDPG 125

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++RSA AF   G++         +  L ++A+G+   +P+  + +   AL+ +   
Sbjct: 126 NAGTLMRSAEAFGATGVVV-AGGVDPYNPKLVRAAAGSSFRVPFAVVDDPMAALRILEEA 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+              +   +  +A+ILG E  GL  +          +   G +++LNV
Sbjct: 185 GYGCWATVPRGGLSPAEVPSDGPVAIILGNEPHGLSDEVVAACVGTVSVPTVGGVESLNV 244

Query: 266 SNAAAVALYITQ 277
           + A ++AL+   
Sbjct: 245 AIAGSIALHDLA 256


>gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E]
 gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii]
          Length = 248

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             + ++YG H V +A+NNP R+I  +L TK      D +  L      + V    + K++
Sbjct: 15  KNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL 71

Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +      A            +D  +    +++LD + D  NIGAI+RSA AF  + II
Sbjct: 72  KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  +K+    +
Sbjct: 132 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDK 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  +    +F
Sbjct: 192 LISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 248


>gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
               F+YG H    +L +     K++     ++ +              ++  P   +D+
Sbjct: 5   ESTEFVYGHHASVESLKSTQEINKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDE 64

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+ L  A     ++D           +   ++LD + DPHN+G+ILR+A A
Sbjct: 65  LTD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR +   +A +AK+++GA+EH+P  R++NL + ++++        G     
Sbjct: 124 AGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDMAG 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 +  N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y  
Sbjct: 184 DDYRRWD-ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQG 242

Query: 277 QNHFA 281
            N   
Sbjct: 243 YNSRN 247


>gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis
           SJ95]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++YG + +   +           +   T+    +   +      +     P + ++K+  
Sbjct: 2   YIYGKNILKEIIEARYPVKHIFFSSSKTERGSLKEIVEDVANLGYSYSFSPNEVLEKMAL 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  +           LD +  +    L++LD + DPHN GAI+R++VA   D II 
Sbjct: 62  TNKHQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDAIII 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  +  E   +    S        I          +        +  +    KP  +  
Sbjct: 122 PKDNAV-EVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGKPYYEID 180

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              KI L+ G EG G+R   +     +  + M   +++LNVS ++ + L+  +    
Sbjct: 181 WQGKICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQRI 237


>gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 250

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 18/250 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
             ++ G + V   L    R+ F+LL      +                PV  VP   +D 
Sbjct: 2   KEWICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDS 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+ALE +      L              L + LD + +P N+G +LRSA A
Sbjct: 62  LSE---SHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SD 215
               G++     +   +  + +++SGA EH+   + +                +GL  S 
Sbjct: 119 VGAHGVVIPLARAAGITPAVVQASSGASEHLLVAQANLAQALETFKEEADAWVVGLEGSP 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274
             +P ++   +  + L++G EG+G+RP  +     +  L M G I++LN + A ++ LY 
Sbjct: 179 ESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIMLYK 238

Query: 275 --ITQNHFAK 282
               ++   +
Sbjct: 239 ALEARSRREE 248


>gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 260

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 12/257 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDAN 86
             K ++S  QK +   + +     G   V   L  P+     L A K  L   R   +  
Sbjct: 6   KIKLIRSLEQK-KFRKECQLFVAEGHKLVDDLL--PAFDCAFLAARKEWLDTRREAVETL 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 ++ V  + + K   ++     L +          + +   QL + LD V DP N
Sbjct: 63  ARKGCEIQEVSAEELQKASLQKNPQDVLVVFRQRPAGGAPEHLLKEQLCLGLDGVQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I  +   +   +    ++  GA+  +    +S          +  
Sbjct: 123 LGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYLSLT---DLLRTANA 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKA 262
              +  +      +     +    +++G EGKG+            ++          ++
Sbjct: 180 DIPVYGTFLDGNDMYGTELSPNGLIVMGNEGKGISRDVASLINRKLYIPNYPPERNTSES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A A+     +  
Sbjct: 240 LNVAVATAIVCAEFRRR 256


>gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
 gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
          Length = 241

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 5/237 (2%)

Query: 47  ENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            ++++ G   V   L +P    ++  L  T     R             +    Q + + 
Sbjct: 2   RSVYITGKRAVETYLVDPGVRERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRY 61

Query: 105 VGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VG         L T    +     +    + LL+ LDH+ DPHN+GAILRSA  F   G+
Sbjct: 62  VGSHRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVGAILRSADQFGALGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +R +  ++A ++KS+SGA      + +                 +  +    +P+ +
Sbjct: 122 ILPERRAVKDAATISKSSSGADA-FVPVVVETNLRRALLHVKEAGFWVYGADMEGQPVHE 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + ++ L+LGAEGKGL    +E    +  +   G + + NVS AA + +Y  +  
Sbjct: 181 VDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVAAGILMYEVRRQ 237


>gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
 gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
          Length = 342

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 14/268 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNAL 78
            R+H  Y +    +   R    +   N  + G      AL         L+      +  
Sbjct: 67  SRSHAAYARDAQASASPRRDVHAAEGNY-IEGRRAAFEALRTGFPIKRALIAQGVENDPA 125

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RN 131
            R            VK+V    +D I    A HQG+ LE        L  +         
Sbjct: 126 VRDLLAGLGEAGVSVKSVARAQLDAISSHGA-HQGIVLEVGKFPYADLADIIAAAGPADR 184

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++VLDHV D  N GAI+RSA      G++   + S   +    K+++GA+ H+P  +
Sbjct: 185 PALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQ 244

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + N+  AL+ + S GF   G +  ++          ++AL++G+EG G+     +T    
Sbjct: 245 VPNIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFT 304

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L   G  ++LNV+ AA    +     
Sbjct: 305 TKLPQRGATESLNVAQAATALCFEWLRR 332


>gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
 gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
          Length = 292

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 89/271 (32%), Gaps = 22/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     ++R               +  AL      I  L         +      + 
Sbjct: 17  YVNLTEIQLRNRLEPSKGLFIAESPKVIDRALAAGREPISLLVEESWIDGMSGMFDVIEK 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  RWGDGIPVYVASPEQLKRLTGYRLHRGALAAMKRWSLPSVEEVCRGARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  +P+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTGM 196

Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                         +    DK+ALI G EG GL   T   
Sbjct: 197 RELHDLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287


>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
 gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
          Length = 287

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 10/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDW--DANLPHPFPVKTVPPQ 99
           +       G   V  A+ +   +   + +L AT  A  R     +A +     V     +
Sbjct: 31  KERRFIAEGPQAVREAVEHRGAQGATLIELFATVEAAERYADIVEAAMLAGARVHYASDE 90

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  +         + +                +L+ VL HV DP N G +LR A A   
Sbjct: 91  VLADVSQTVTPQGLVGVCHFLDSPFEEILKAGPRLVAVLAHVRDPGNAGTVLRCADAAGA 150

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++ T       +    +++ G+L H+P      +  A++ + + G + +      +  
Sbjct: 151 DAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGQDD 210

Query: 220 LEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY 
Sbjct: 211 LDAELDAGTMGGPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYA 270

Query: 276 TQN-HFA 281
           +     A
Sbjct: 271 SARAQRA 277


>gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 10/239 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQT 100
            + +++YG H   AAL N +RK  +LL T+N +          +         K V   T
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYPKQVNLNT 62

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           I+ ++   + HQG+AL+ + + + +++            +++LD V D +N+G+I+RSAV
Sbjct: 63  INSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAV 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  + 
Sbjct: 123 CFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAK 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 183 QGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241


>gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 124/258 (48%), Positives = 169/258 (65%), Gaps = 9/258 (3%)

Query: 16  KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           +DS YA+LRR +RD K    +  ++ ++     Q   ++LYG+H V AAL NP R +  L
Sbjct: 7   QDSRYARLRRQYRDIKGSFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILRHL 66

Query: 72  LATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            AT NAL RL+ +       P  + +  P+ ++  VG EAVHQG+ LET PL S +L  +
Sbjct: 67  YATPNALKRLNIN---ESNIPCSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSEL 123

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I Y
Sbjct: 124 TNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEY 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I + NL+ AL+++    F + GL S+   PLE  +  +KI+LILGAEGKGLR KT+E   
Sbjct: 184 ITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENVY 243

Query: 250 SMAHLHMPGIIKALNVSN 267
           S+  L +PG IK+LNVSN
Sbjct: 244 SLVRLDLPGDIKSLNVSN 261


>gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
 gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + I+  +  +P+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAILLPQDNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   +KIAL+ G+E KG+R   ++T   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTNKFITNKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFH 236


>gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
 gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
          Length = 328

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 20/295 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    ++  K     R         Q      +  +  + G + V  AL   
Sbjct: 35  TPKAEDRVYH--KAYKMKRAAERRAATSTNRKFQTRLGGKRVSDELVTGRNAVLEALRTN 92

Query: 65  SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  + ++   +   R           P+  +P   +D++    AVHQG+A++  P 
Sbjct: 93  IPAKHLYVMSRIEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPY 151

Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             P      LD +            L + LD + DP N+GAI+RS  AFS DG+I  +R 
Sbjct: 152 QYPDATDLVLDVMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S + +A   K+++GA   IP    +NLT  LQ+    G   IGL       L      ++
Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASE 271

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + +++G+EGKGL     ET   +  + +   +++LN + A  + LY    H A+
Sbjct: 272 PLCVVVGSEGKGLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
          Length = 251

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPP 98
            T++  + F+ G H   AAL +  ++I ++   K                    +  VP 
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSD-QEINKVFIQKGLKTDAIAQLVKSAKERHLVISNVPK 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
             +D++   +  HQG+AL  A     T+D               ++LD + DPHN+G+IL
Sbjct: 61  TKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    G
Sbjct: 120 RTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                      + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA++
Sbjct: 180 TDMQGTDYRRWDAK-GAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAASL 238

Query: 272 ALYI--TQNH 279
            +Y      H
Sbjct: 239 LIYQGFATRH 248


>gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 328

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 20/295 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    ++  K     R         Q      +  +  + G + V  AL   
Sbjct: 35  TPKAEDRVYH--KAYKMKRAAERRAATGTNRKFQTRLGGKRMSDELVTGRNAVLEALRTN 92

Query: 65  SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  + ++   +   R           P+  +P   +D++    AVHQG+A++  P 
Sbjct: 93  IPAKHLYVMSRIEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPY 151

Query: 122 LSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             P      LD +            L + LD + DP N+GAI+RS  AFS DG+I  +R 
Sbjct: 152 QYPDATDLVLDVMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERR 211

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           S + +A   K+++GA   IP    +NLT  LQ+    G   IGL       L      ++
Sbjct: 212 SAAVTAGAWKTSAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASE 271

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + +++G+EGKGL     ET   +  + +   +++LN + A  + LY    H A+
Sbjct: 272 PLCVVVGSEGKGLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
 gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
          Length = 300

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 23/253 (9%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105
            F+ G H V  AL+         LA  N   RL  D           ++TVP   +DK  
Sbjct: 3   EFIEGKHPVWEALSTHVPITRIFLADGNKHDRLLQDILHMAARQHIVMETVPRAQLDKRS 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------------------RNSQLLMVLDHVNDPHN 146
            K   HQG+  +  P    +LD +                       L++VLDH+ D  N
Sbjct: 63  -KRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDAGN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA +    GII   + S   +A   KS++GA+ HIP  +++NL  AL ++ + G
Sbjct: 122 LGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKNEG 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G S  ++  +        + L++G E  GL   TQE       L   G++ +LNV+
Sbjct: 182 YWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLNVA 241

Query: 267 NAAAVALYITQNH 279
            +A V +Y     
Sbjct: 242 QSATVCMYEWLRQ 254


>gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 273

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 7/259 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    +     + G ++V AA+   S     + AT++A          
Sbjct: 14  PRIVNAAKLH-RAAARKKAGRFIVEGANSVEAAVATGSATD--VFATESAAGEFAEILTT 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V T  +       +    +     AL T  L S         +L+ V    NDP 
Sbjct: 71  AGYMDVFTHAITDTAARHLSDTVSTTGIFALCTPVLWSVGKVLRGGPRLVAVCVETNDPG 130

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R A     D ++        ES+   ++++G+L H+P  R  N++D + ++ + 
Sbjct: 131 NAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNISDVMGQLKAA 190

Query: 206 --GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                   +  D       E+     A + G E  GL  +  + A     + + G  ++L
Sbjct: 191 GLSIAATTMGGDVSLDDAAEVVAQPTAWLFGNEAHGLPQELIDAADHRVSIPIRGHAESL 250

Query: 264 NVSNAAAVALYITQNHFAK 282
           N++ AAA+ ++ +    ++
Sbjct: 251 NLATAAAMCMWESSKVLSR 269


>gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 246

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R +                     +  + G H    A
Sbjct: 1   MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  +  +   ++   R+   +       V  V P+ + ++       QG+  E A 
Sbjct: 40  EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAEVAM 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  D      L++  + V DP N+G ++R+A A   DG++ +++ +   +    +S 
Sbjct: 92  PSLPLADLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R        +  +          S      +    N   AL++G EG G+
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTVEHNGDFALVMGNEGNGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 283

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 105/264 (39%), Gaps = 8/264 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARL 81
            R++   K++++         +   + L G   ++ AL +      +F       AL R+
Sbjct: 16  SRHNSRVKELRAAFSHPGK-GERGYIALEGELLLAEALRSGLAPAAVFIRSGQWEALERV 74

Query: 82  DWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMV 137
              A          +  +P       V  E+     AL   P      L       LL+V
Sbjct: 75  AAKAPSRAALDTAEILELPADIFSSAVDTESPQGIAALLAPPRFDWDDLFPAHAPALLLV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              + DP N+G ++RSA AF   GI+T        +A + ++++G++     +      +
Sbjct: 135 TASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFR-MPVVARCEEE 193

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L ++ + G      ++D   P  Q       AL++G EG GL P   + A +   +  P
Sbjct: 194 VLARLAAQGVTLFATTADGDLPATQAALTQPCALLIGNEGAGLTPHLLQAADARLAIPTP 253

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
           G +++LN + A ++ LY      A
Sbjct: 254 GPVESLNAAIAGSILLYEASRQRA 277


>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 251

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 90/254 (35%), Gaps = 12/254 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + ++ YK ++    + ++  + +     G   +        ++I + +  ++   R   
Sbjct: 6   SKENKLYKTIKKLKTR-KYREKEKLFIAEGHKFL------DFKEIPKAIILRDGDDRYQD 58

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P         ++I  +E                          +++LD + D
Sbjct: 59  KVEEFV-CPKYIFSESLFNEISSQENSQG----IILIYPMKESSIASIGDNIVILDRIQD 113

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R + A     I+  K      +    +S+ G+L ++ +I +           
Sbjct: 114 PGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRSSMGSLFNMNFIYMEEDELIKFMAE 173

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                T     +        I   K A+I G EG+G+  +  E + S   + + G  ++L
Sbjct: 174 KNYKSTATALREDAVSYTDIIPGSKNAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESL 233

Query: 264 NVSNAAAVALYITQ 277
           NV+ A  + LY  +
Sbjct: 234 NVAVATGIVLYKFR 247


>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 248

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 103/274 (37%), Gaps = 30/274 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI                      +  +K +   +   + + G H +  A
Sbjct: 1   MEQITSAQNAKIKHA-------------------NKLKKKKERDKSGLVLVEGTHLIDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +        +           +A          +  +  + + G        A+   P
Sbjct: 42  VKSRLTIKQLFIVEPERFDIELIEAAEEQ----YQINFKVAEALSGTVTPQGIFAIIEKP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +S  ++  +    +++LD + DP N+G ++R+A A + D I+ +   +      + +++
Sbjct: 98  DVSKQVEVAKQ---VLLLDRIQDPGNLGTLIRTADAAALDLIVMSPGSADPFQDKVLRAS 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P I                   +  + +  +   QE       L+LG EG+G+
Sbjct: 155 QGSVFHLPIISQDIKEFVQDFDGPVYGTALDNAINFNEVESQEKFG----LLLGNEGQGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+  E  T    + M G  ++LNV+ A ++ +Y
Sbjct: 211 DPELLEYTTQRLTIPMYGEAESLNVAIAGSILIY 244


>gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 6/268 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  +++ ++     R         + GV  +S A+ +       L   +  L+
Sbjct: 4   VQRITSRNARFQQWEALLGNRRKRGSLRAFLVQGVRPISLAVEHGWPIDALLHDDRRKLS 63

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVL 138
               +           + P+ +  + GK      L               V    L ++ 
Sbjct: 64  DWARELLRTVRAERFALAPELLADLGGKTEGAPELIAVVGMPADGLDRIEVGPDFLGVLF 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRIS 193
           D    P NIG+++RSA AF   G+I T   +        ++ +G+L       +P     
Sbjct: 124 DRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVPAPDEV 183

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 Q+        +G        +        + L++G E  GL    +E   +M  
Sbjct: 184 MTWVERQRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAWRERCDAMVG 243

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M G   +LN + AA   LY       
Sbjct: 244 IPMTGAASSLNAATAATAVLYEASRQRT 271


>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 288

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 96/248 (38%), Gaps = 11/248 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPP 98
           +       G   V  A+ +     +  + +L AT  A  R     +A L     V     
Sbjct: 31  KERRFIAEGPQAVREAVEHRGAGGASTLIELFATAEAAERYHDIVEAALAAGARVHYACD 90

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + ++         + +                +L+ VL HV DP N G +LR A A  
Sbjct: 91  EVLAEVSQTVTPQGLVGVCHFLDSPFEDILAARPKLVAVLAHVRDPGNAGTVLRCADAAG 150

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++ T       +    +++ G+L H+P      +  A++ + + G + +      + 
Sbjct: 151 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGED 210

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 211 DLDAELDAGTMGTPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 270

Query: 275 ITQN-HFA 281
            +     A
Sbjct: 271 ASARAQRA 278


>gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 269

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 8/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +  R          A   +  D
Sbjct: 6   KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L              ++K+  KE     +A+             L     +   ++++
Sbjct: 64  RELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG+I                +S  +     +  ++L + L
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILC-DPVVDLYNPNVIRSSLGIVFTMPVWQASLKEVL 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +H   +Q    +  ++     +     + ++ G+E  GL P     +     L M G 
Sbjct: 183 DLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LN+S++ A   Y      +
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264


>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
          Length = 242

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 12/239 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V   L    R + +L  ++N  + L             ++      +D + G  
Sbjct: 7   VIGRNAVRETLKAG-RNVNKLYISENHDSGLVSIIKMAKSKGISIQKTNNHKLDSMSG-S 64

Query: 109 AVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+ + +L       +      L+++LD++ DPHN GAI+RSA     DG
Sbjct: 65  THHQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R S S    + KS++GA+EHI    +SN+   +  +   G   +GL  + +   +
Sbjct: 125 VIMQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGENYYD 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +  +AL++GAEGKGL    +E    ++ + +     +LN S AA + L+      
Sbjct: 185 MD-YDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEAVKTR 242


>gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 285

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 2/268 (0%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S  D       R +   K++++     R T       + GVH +  A+ +  R      +
Sbjct: 18  SPNDRLRLITSRQNNAVKELRAAFHTGRPTD-DGYSAVEGVHLLEEAIRSGLRFKTIFFS 76

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
                        +        +P +     V  E+     AL               + 
Sbjct: 77  QAAEDRAGKLLPQIHSNVETLLLPDEVFSSAVLTESPQGVAALVKLKTFKLEDLLRAENP 136

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L+ +  V DP N+G ILRSA AF   G++   + +   +  + + +SG++  +P +++ 
Sbjct: 137 MLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVIRGSSGSVFRLPVVKVE 196

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               AL+++ + G Q +  SS   +PL +        +++G EG G+      +      
Sbjct: 197 WP-AALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTLA 255

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     +++LN   AA++ +Y       
Sbjct: 256 IPHSPKVESLNAGIAASIVMYEAARQRN 283


>gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
           sp. 1501(2011)]
          Length = 262

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 23/252 (9%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------------PFPVKTVP 97
           YG+H + A L +       L   +    +   +A                     ++   
Sbjct: 8   YGIHAIHALLTHRPTDAMALFVQQGRSGKEGNNAAEEADSTFEEILQLAEQMGVSIQQAS 67

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRS 153
              +  + G       +       ++   +          L +VLD + D HN+GA LR+
Sbjct: 68  RDKLTALCGSPQHQGVVLNARPLAMADEGEIATLAKAEDALFLVLDQITDAHNLGACLRT 127

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGL 212
           A A   D +I  K +S S +  +AK + GA+E +P I ++NL   ++    S  F     
Sbjct: 128 AAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGTA 187

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK----ALNVSNA 268
             ++ K L       K+A+I+G+EG+G+R  T E    + ++ M G       +LNVS A
Sbjct: 188 LDETAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVA 247

Query: 269 AAVALYITQNHF 280
             + LY      
Sbjct: 248 TGMVLYEVSRQR 259


>gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70]
 gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s]
 gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 269

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 8/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K   +   K +         L G   +  AL +  R          A   +  D
Sbjct: 6   KNNARVK--SALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALD 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLD 139
             L              ++K+  KE     +A+             L     +   ++++
Sbjct: 64  RELTSLGIEKLYCSKGILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR A     DG+I         +  + +S+ G +  +P  + S      
Sbjct: 124 QAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPVWQASLKEVLD 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S      +Q+       ++ G+E  GL P     +     L M G 
Sbjct: 184 LVHQQEWQVFTTTPSAQTFYFDQD-FCQPTVVVFGSEKDGLSPDWLNGSFCNIALPMLGK 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LN+S++ A   Y      +
Sbjct: 243 ADSLNLSSSVAAVAYEVVRQRS 264


>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
          Length = 535

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57
           S+++S++    + S   + R   R     +     S    + E          L+G H  
Sbjct: 127 SRRRSDERLGRRPSLGERSRPADRQLPSKRFDPSTSDRVPEAETFGPAAADDLLWGRHAS 186

Query: 58  SAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113
            AAL    R I ++  T +     R              V+ V    + ++ G  AVHQG
Sbjct: 187 QAALEAG-RPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 244

Query: 114 LALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           + L+TA   +  L ++           LL+ LD + DPHN+GAI+RSA A    G++  +
Sbjct: 245 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 304

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ +    L     +
Sbjct: 305 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 364

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + ++ G+E +G+   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 365 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 417


>gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1]
          Length = 285

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 18/256 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +              +  AL+     +  LL  ++   +           P+ T P   +
Sbjct: 29  YEPASGLFIAESPKVIERALDAGYEPVSILLEDRHVEGQCADIIKRCGDIPIYTAPFDVL 88

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G       L       L        ++  + VL+ V +P N+GAI RSA A   D 
Sbjct: 89  TKLTGFALTRGMLCAMRRAELPSVESVCEHAARIAVLEEVMNPTNVGAIFRSAAALGMDA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPY------------------IRISNLTDALQKMH 203
           ++ T   S       A+ + G +  IP+                  I        L  M 
Sbjct: 149 VLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFDTLGLAHNKADHGIWPEFGMGQLHSMG 208

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    +        +  + D++A+ILG EG+GL+ +T +++     + M   + +L
Sbjct: 209 FRTASMALRNDTIDIHDPELKQIDRLAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSL 268

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A+AVA +     
Sbjct: 269 NVAAASAVAFWELGRR 284


>gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 268

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 8/256 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY +++  N +     +       G   +  A +         L     L  L      
Sbjct: 14  ADYVQLREVNLRRLLEEEHGLFIAEGDKVIRRAADAGYEP-RSFLLAPRWLDTLADVLEK 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDP 144
               PV  V  +  +++ G   VH+G            LD          + + D + D 
Sbjct: 73  WPEAPVYLVSAELAEQVTGFH-VHRGALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDH 131

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA  R+A A   D ++ +   +        K + G +  +P+ R+++   AL ++  
Sbjct: 132 TNVGAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLRE 191

Query: 205 WGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF T   +              ++ K+ALI G EG GL P           + M G + 
Sbjct: 192 HGFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVD 251

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+++AAVA Y T+
Sbjct: 252 SLNVASSAAVAFYATR 267


>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 418

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 17/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNH-RDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAA 60
           S     +   ++   +    RN+  D+ +     +K +         N   +G H+  A 
Sbjct: 103 SSSNKRQPNLVQSRRFTSFSRNNQNDFSQSTQEIEKPKQNFVFESESNDIFWGRHSTQAI 162

Query: 61  LNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L +  R I ++  T       R              V+ V    +  +     VHQG+AL
Sbjct: 163 LESG-RAIHRIWCTSEIRSSPRFFQLLKDAKALGVLVEEVSWARLGHVTT-GGVHQGIAL 220

Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +TA   +  L         +  S +L+ LD + DP N+GAI+RSA A    G+I  +R S
Sbjct: 221 QTAASETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRS 280

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +  +AK A+GALEH+P  R+ NL  +L+++   G+  IGL+ +  K + +   +  +
Sbjct: 281 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDKTINEITFDGPL 340

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L +G+E KGL   T+     +  + + G+  +LN S A +V LY     
Sbjct: 341 VLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQ 390


>gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 329

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 26/275 (9%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLP 88
           ++ +  +  R TS  +   + G ++V  AL    P+  ++ L     +   R        
Sbjct: 55  RLAARRRVDRFTSDSDEFVI-GRNSVLEALRAHVPASVLYVLNRIEHDDRTREIIRLAGL 113

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--------------------A 128
               +       +D+I   +  HQG+ ++ AP    TL                      
Sbjct: 114 EGLKILEADRLEMDRIARTD-HHQGVIIKAAPYQYHTLQELADKAEAKASAMKAASPAAR 172

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P
Sbjct: 173 ALAQPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLP 232

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
             R+ NLT A++ +   G+ +I L       + +    +D + ++LG+EGKG+    +E 
Sbjct: 233 VARVVNLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQ 292

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             S+  + M  ++++LN S AA +AL+      A+
Sbjct: 293 CDSIVSIPMTSLVESLNASVAAGIALFSVHQARAR 327


>gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1]
          Length = 280

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 9/254 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85
                 +   ++     +     + G   V  AL+     + +L  T  A  R       
Sbjct: 13  PRVAAARKLLRRP-GRDRAGRFLVEGAQAVREALDAC--PVHELFVTTAAAQRHPELVES 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V TV  Q    +         +A+     +        +   + V   ++DP 
Sbjct: 70  ARERGARVLTVTDQAAAGLSETVTPQGLVAVCDLLDVPLATALAGSPGFVTVCAGISDPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-- 203
           N+G ++R A A  CD ++         +    ++++G++ H+P  R  +    +      
Sbjct: 130 NVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGSVFHLPLARDRDAQGVVAACRSA 189

Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +          D   P    I    +A ILG+E  G  P     A     + + G  +
Sbjct: 190 GLTTLVADGRGELDLHAPEAAPILAGPVAWILGSEAHGPGPDVFAAADHRVRVPIHGRAE 249

Query: 262 ALNVSNAAAVALYI 275
           +LN++ AAA+ LY 
Sbjct: 250 SLNLATAAAICLYA 263


>gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 270

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 24/284 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I+ +++E+I                  KK  +  QK +   +   + + G   ++ A
Sbjct: 1   MDEITSRENERI------------------KKACALKQK-KERQKQRKVLVEGWRLIADA 41

Query: 61  LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALE 117
                  +   +  + A   R      L      +   V P+  DK+   +      A+ 
Sbjct: 42  AAQGLSPVQCFITPQAATHERFQGLYALGKRLSWQFFVVAPKVYDKLKETQHPQGIAAVL 101

Query: 118 TAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                +  L + +   + ++ L  V DP N+G+I+R+A A     ++ ++      +  +
Sbjct: 102 PYFTTALDLTERIAPQRPIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVYNDKV 161

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +SA GA+  IP +   ++            +  G ++       Q        L  G E
Sbjct: 162 LRSAMGAVFKIPLVTDVDMETLQAYCLRTHRRLTGAAASGSSSYTQLDYAQARVLAFGNE 221

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279
           G GL     +       + M    ++LN++ A  + LY      
Sbjct: 222 GNGLALPFLQACAETVTIPMRPETESLNLAAAVGIVLYKAWERQ 265


>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 255

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+   ++ I                      +   K ++  Q     + G H V  A
Sbjct: 1   MQKITSTTNQTIK-------------------NLAKLNKKKYREQEGYYLIEGFHLVDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             +     + LLAT  A  +L+    L      +  +  +    +           +   
Sbjct: 42  FKSKLNFKY-LLATPAAFEKLNIQYQLDLTDKRLVQINERVAKHLSATTNSQDVFMVLKI 100

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                         LL   D + DP NIG I+R+A A   +G++ ++  +   +    ++
Sbjct: 101 NQPKHFTFNFGKWILL---DSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+  H+P I+   L    Q   ++      +  D  K L    K  ++ALI+G E  G
Sbjct: 158 MQGSQFHLPIIKADLLKTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +    A     + + G  ++LN + AA + +Y   
Sbjct: 218 VSDEAVNLADEKLFIPIKGQAESLNAAIAAGIMIYHFA 255


>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
 gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
           CNS-205]
          Length = 372

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L      I   +      +                +  
Sbjct: 118 RRSNPAKDAPELLVGRNPVLESLRANVPAIALYVAQGLNSDDRISEIVRTAADRGIAMLE 177

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           V    +D++ G   +HQG+ L+  P      +        + + LL+ LD V DP N+GA
Sbjct: 178 VSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLGA 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF  
Sbjct: 237 VIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVV 296

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L     +   + +++G+EG+GL     ET      + M   +++LN S A
Sbjct: 297 VGLDADGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASVA 356

Query: 269 AAVALYITQNHFA 281
           AAV L       A
Sbjct: 357 AAVTLAEVARRRA 369


>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
 gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
          Length = 376

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L    P+  ++     + +                +  
Sbjct: 122 RKSNPAKDTPELLVGRNPVLESLRAQVPATALYTAHGIEIDDRVNEIVRTAADRGIAILE 181

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           +    +D++ G   +HQG+ L+  P      +        + + LL+ LD V DP N+GA
Sbjct: 182 ISRAELDRMTG-GVLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLGA 240

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  
Sbjct: 241 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMV 300

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D    L         + +++G+EG+GL     ET      + M   +++LN S A
Sbjct: 301 VGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVA 360

Query: 269 AAVALYITQNHFA 281
           AAV L       A
Sbjct: 361 AAVTLAEVARRRA 373


>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
 gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
          Length = 312

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 12/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTVPP 98
             ++     + G + V  AL    P+  ++  L    +                +  VP 
Sbjct: 58  KKAEEAPEIIAGRNPVVEALRADVPATALYVALNIDADDRVTEAVRMAADKGVSILEVPR 117

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAIL 151
             +D+     AVHQGL L+  P    T D             LL+ LD V DP N+GAI+
Sbjct: 118 TELDRKTD-GAVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAII 176

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF   G++   R S   +AV  ++++GA   +P    +NLT  L++  + G    G
Sbjct: 177 RSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIAG 236

Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L +D    ++    + D + +++G+EG+GL    +ET      + M   +++LN S A A
Sbjct: 237 LDADGSTDIDTMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGA 296

Query: 271 VALYIT 276
           V L   
Sbjct: 297 VLLAEI 302


>gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 302

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T   S        + + G +  +P+              S     
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234
               S  +   ++                                       +++A++LG
Sbjct: 199 DKCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
 gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
          Length = 302

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T   S        + + G +  +P+              S     
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234
               S  +   ++                                       +++A++LG
Sbjct: 199 DKCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 263

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 10/240 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + ++L+G+H V  AL NP+R   +L+ T+NA  +L          P +   P+     + 
Sbjct: 22  QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +VHQG ALE  PL    L             L+++LD V DPHN+GAILRSA  F   
Sbjct: 81  PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I+T R +  E+  LAK+ASGALE  PY+R+ NL + ++++ + GF  +GL   ++  +
Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200

Query: 221 EQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +    +  IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAAVALY  +
Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260


>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
 gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
          Length = 271

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 91/258 (35%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++R  K      QK ++  +   L   G   V  A++        L+A +        
Sbjct: 6   SRDNRLVKLAVRLQQK-KYRYEERRLIAEGFRIVEDAVHMGITDGICLVAAEIVERPELQ 64

Query: 84  DANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLD 139
           +         +    +P +  +K+    +     A+          L  V N + ++ L+
Sbjct: 65  NLQAESEKVGWEWYLLPDRIYEKVKETHSSQGITAILPFFEYTFKNLPEVANERPILYLE 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+A A +   +  +       +    +SA GA+  +P ++  +L    
Sbjct: 125 AIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGAIFKVPVVQNVSLERIS 184

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                      G    + K   Q        +  G EG GL     E       + M   
Sbjct: 185 AFCDEKKRILTGTLLGANKLYTQVDWRQPTVIAFGNEGNGLSQACAEACRQALTIPMKSH 244

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LN++ + AV LY   
Sbjct: 245 TESLNLATSVAVVLYKAW 262


>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 263

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 108/283 (38%), Gaps = 25/283 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+ K                  ++  +K+++     S+   +     L GVH   A 
Sbjct: 1   MKLITSK------------------DNPLFKELKQLASSSQARRRAGQSLLDGVHLAQAW 42

Query: 61  LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALET 118
           L +       ++A        +            +  V    +   V       GL L  
Sbjct: 43  LQHRGAPQLCVVAESAQYHPEVAPILAQCEALQAQCLVLADKLYDAVSTVDNGVGLFLLV 102

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A  ++    A+  S +L+  D + DP N+G+ILRSA A     +  +     + S  + +
Sbjct: 103 ATPVASAPKALTESAVLL--DGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLR 160

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GA   +  +  ++L   +    +     +  SS + + +     +  +A +LG EG+
Sbjct: 161 AGMGAHFVLDIVEDADL---VALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQ 217

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+    QE AT    +   G +++LNV+ AAAV L+       
Sbjct: 218 GVSAALQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRT 260


>gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 250

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                 +      V++VP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       D       L++LD + DPHN+G+ILR+A
Sbjct: 63  DRLVD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGVDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAYNSR 246


>gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase)
           [Deinococcus deserti VCD115]
 gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA
           methylase) [Deinococcus deserti VCD115]
          Length = 270

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 18/273 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I SL++ H  +L R            +  R       + + G   ++ A+   S    
Sbjct: 5   ETITSLQNPHVKRLVR-----------LRNRREREAHGVILIEGARELARAVQ-GSVPPH 52

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L       +          P     +     +K+ G+E       L  A L +P L   
Sbjct: 53  TLYCCPELYSPEARSLAATLPGDRLELSRAAFEKVSGRENP--DGLLGVADLPAPRLPEP 110

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  +L+VL  +  P N+GAILRSA A    G++   R +      + +S+ G++     
Sbjct: 111 GNDAVLVVLHGLEKPGNVGAILRSADAAGAQGVLVLGRGADPYGPNVIRSSQGSVFT-MP 169

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + + +   AL+ + + GF T+  + D+ +         ++AL+LG E  GL    +    
Sbjct: 170 VAVLDEGTALEWLSTRGFTTVACTPDAPRTYWDAPLTGRVALLLGTEHAGLPESWR-HTD 228

Query: 250 SMAHLHMPGI--IKALNVSNAAAVALYITQNHF 280
               + M       +LNV+ AAA+ L+      
Sbjct: 229 HSVSIPMHEGSGADSLNVATAAALVLFECARQR 261


>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
           dioxanivorans CB1190]
          Length = 329

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 12/255 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLA-TKNALARLDWDANLPHPFPV 93
           N+  R         + G + V   L     +  +   +  T +   +            +
Sbjct: 73  NRSRRAGDGETPETVLGRNPVVECLRAGVPATALHVAVGATADERVKEAVHLAADAGISI 132

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146
             VP   +D++ G  A+HQG+AL   P      D             L+  LD V DP N
Sbjct: 133 LEVPRNDLDRMAG-GALHQGVALVVPPYEYAHPDELLEAAVGSGRPALIAALDGVMDPRN 191

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA++RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  LQ+  + G
Sbjct: 192 LGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYANTG 251

Query: 207 FQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               GL++D    ++      D + L++G+EGKGL    +ET      + +   +++LN 
Sbjct: 252 LMVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESLNA 311

Query: 266 SNAAAVALYITQNHF 280
           S AA V L       
Sbjct: 312 SVAAGVVLAEVARRR 326


>gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA1]
          Length = 318

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99
                 ++ G + V  AL+     +      + A      R        H   +      
Sbjct: 66  KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            +D++ G  + HQG+AL        T+D          +  L++ LD V DP N+GAI+R
Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL
Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++   +      +  + L++G+EG+GL   T+++   +  + +   +++LN S AA++
Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303

Query: 272 ALYITQN 278
           ALY    
Sbjct: 304 ALYEASR 310


>gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
 gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
          Length = 290

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y  +     +S                V  AL+   R +   L ++     L      
Sbjct: 36  RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPL-SFLMSEKWADDLSDVLTK 94

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +  P      + +++I G       LA    P      D +  +  + +L+ + D  N+
Sbjct: 95  YNNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 154

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ T R +        + + G +  +P+ RI+     L+ +H  GF
Sbjct: 155 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 214

Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ D            ++ K+ALILG EG GL P T         + M   + +LN
Sbjct: 215 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 274

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 275 VAAASAVAFWETR 287


>gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 273

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y  +     +S                V  AL+   R +   L ++     L      
Sbjct: 19  RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPL-SFLMSEKWADDLSDVLTK 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +  P      + +++I G       LA    P      D +  +  + +L+ + D  N+
Sbjct: 78  YNNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ T R +        + + G +  +P+ RI+     L+ +H  GF
Sbjct: 138 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 197

Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ D            ++ K+ALILG EG GL P T         + M   + +LN
Sbjct: 198 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 257

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 258 VAAASAVAFWETR 270


>gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 250

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 3/242 (1%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            R  + P  L+LYG+HTV+AAL NP R++ +LL T  A A L      P     + V   
Sbjct: 7   PREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQAERVERA 66

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                + ++AVHQG AL   PL    L+    ++   +++LD V DP N+GAILRSA AF
Sbjct: 67  RFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAILRSAAAF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++   R +P E+  +A++A GAL+ +P +R  NL   +  +   G+  +GL   +K
Sbjct: 127 GAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMGLDGTAK 186

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             L      D   AL+LGAE  GLR   +ET   +  L +   +++LNVS AAA+ALY  
Sbjct: 187 TELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAAIALYEL 246

Query: 277 QN 278
             
Sbjct: 247 SR 248


>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA2]
 gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL001PA1]
 gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL044PA1]
 gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA2]
 gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA3]
 gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA3]
 gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA4]
 gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL060PA1]
 gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA2]
 gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL103PA1]
 gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
           P08]
          Length = 318

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99
                 ++ G + V  AL+     +      + A      R        H   +      
Sbjct: 66  KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            +D++ G  + HQG+AL        T+D          +  L++ LD V DP N+GAI+R
Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL
Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++   +      +  + L++G+EG+GL   T+++   +  + +   +++LN S AA++
Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303

Query: 272 ALYITQN 278
           ALY    
Sbjct: 304 ALYEASR 310


>gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
 gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
          Length = 318

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQ 99
                 ++ G + V  AL+     +      + A      R        H   +      
Sbjct: 66  KGAGPEWVIGRNPVLEALHVG-LPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRG 124

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            +D++ G  + HQG+AL        T+D          +  L++ LD V DP N+GAI+R
Sbjct: 125 ELDRMTG-GSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIR 183

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL
Sbjct: 184 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGL 243

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++   +      +  + L++G+EG+GL   T+++   +  + +   +++LN S AA++
Sbjct: 244 AGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASI 303

Query: 272 ALYITQN 278
           ALY    
Sbjct: 304 ALYEASR 310


>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
 gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL2A]
          Length = 416

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 131/287 (45%), Gaps = 17/287 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLFLYGVHTVSAALN 62
             + E+  S   ++  K  +    YK+ ++    +     +    +  ++G H+  AAL 
Sbjct: 106 SNRFER-KSTNPAYRNKNSQGASSYKREENNEPLSYSESFSKTLSDDLIWGRHSTEAAL- 163

Query: 63  NPSRKIFQLLATKNAL--ARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
              R I ++  T       +              V+ V    + ++    AVHQG+ L+ 
Sbjct: 164 VGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLT-NGAVHQGIVLQI 222

Query: 119 APLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A   +  L  + ++        LL+ LD + DP N+GAI+RSA A    G+I  +R S  
Sbjct: 223 AASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAG 282

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    L +      + +
Sbjct: 283 LTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVV 342

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++G+E KG+   T+     +  + + G+  +LN S A ++ LY    
Sbjct: 343 VVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 389


>gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+YG + V   L + S KI Q+  + +   R            +K V  +T+ ++   + 
Sbjct: 4   FVYGKNVVKQMLMDNS-KIKQIYMSVD--DRDVEQLAHKQRVQLKRVDKKTLTQMTKTDR 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E  P    ++D +  +       L+++LD + DPHN+GAILR+A A    G+I
Sbjct: 61  -HQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVI 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A +AK ++GA++ +    ++NL     +           +    +     
Sbjct: 120 FKKTNAVGLTATVAKVSAGAIDTVKCASVTNL-SRTLEDLQKKGWWAVGTDMDGQDYRSV 178

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    LI+G EGKG+    +E    +  L M G I++LN + +A + +Y   N  
Sbjct: 179 KYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYNMR 235


>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 265

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 94/246 (38%), Gaps = 11/246 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           S   ++    +       G + V++AL      + ++  T++  AR            V 
Sbjct: 24  SKLLRAAGRRKAGLFLAEGSNAVTSALAAG--LVDEIFVTEDGAARYPDLLT----GRVA 77

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  + +  +         +A+  A       D  R   L+ V   V +P N G ++R A
Sbjct: 78  YVTDRAMRGLSDTVTPPGIVAVCRALPEGRVPDGAR---LVAVPVDVAEPGNAGTVIRVA 134

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212
            A   D ++         +  + ++++G++ H+P ++  + + A+ ++   G        
Sbjct: 135 DAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQERDASAAIAQLKESGLTVLATAA 194

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       E+     A + G E  GL    Q  A     + + G  ++LN++ AA++ 
Sbjct: 195 DGEVSLDDADEMLAAPTAWLFGNEAHGLPRGLQAAADHRIAIPIRGRAESLNLATAASIC 254

Query: 273 LYITQN 278
           LY +  
Sbjct: 255 LYASSR 260


>gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 269

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 28/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I  +   H    R                    + +   + G   +  A
Sbjct: 1   MKFISSPSNEVIKEVIKLHDKNKR-------------------KKLKKCIVEGWRLIQDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETA 119
             N       +++      R D        + +  V    ++KI   E     +      
Sbjct: 42  KENGIFIEKLIISKSLWNKRRDEILKSFSSYDLYIVEDNLMEKISLMETPPGIMGVFPLF 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L   +N+++++  D + DP N+G I+R A     D +I ++      +  + + 
Sbjct: 102 LFPKWELLEEKNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVIRG 161

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++G++  +P       T          ++ I       K   QE   +   LILG E  G
Sbjct: 162 STGSIFRVPIWVSDKKTFIEFFKG---WKVIIADPKGSKVYFQENLRESFVLILGNEAWG 218

Query: 240 LRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            R +  +       +  + +   + +LNVS AA+V L+  Q   
Sbjct: 219 TRKE--KYIDLDPILLKIPLREGVDSLNVSIAASVFLFEAQRQR 260


>gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 318

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKI---FQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +  + G + V  AL +    +    Q     +   R             +   P   +D+
Sbjct: 74  SEMVVGRNPVYEALRDGVPAVTLYVQQYIDNDERVRDVLKLAGDRGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      D             L++ LD V DP N+GAI+RS  A
Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHFA 281
                A
Sbjct: 313 VARRRA 318


>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 249

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 10/254 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
               ++S +QK ++  +     + G+ +++  + +  +        +          +LP
Sbjct: 6   QISFIKSLHQK-KYRKENGIFIIEGIKSIAEFIQSSYQVHSIYYLAQYQ----SLLPSLP 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V    ++KI   +     LAL   P  S     +      +VLD V DP N+G
Sbjct: 61  ANIKLFEVNNAELEKISTLQTPQGILALVNIPKTSGLDIELLKGNFSLVLDDVQDPGNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A  F    II +       +    ++  G+L  +                     
Sbjct: 121 TIIRTAEWFGFRQIICSPHTVEVYNPKTVQATMGSLSRLKVYYTDLAPLLSNTPVPVFGA 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +   S  +     E       +ILG EG+G+ P+  +  T    +   G  ++LNV+  
Sbjct: 181 VLDGKSIYEGGWGTEGL-----VILGNEGQGISPEIMKLITHPVTIPRVGAAESLNVAIC 235

Query: 269 AAVALYITQNHFAK 282
           AA+       +  K
Sbjct: 236 AAILCADISRNLNK 249


>gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 268

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 96/265 (36%), Gaps = 6/265 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +         +   K ++S   ++R   +     + GVH + AAL +     F  +    
Sbjct: 4   NPTELITSDKNTTVKLVKSLLTQARQRKKHGLTVIEGVHLIDAALRSDYP--FDQILVSE 61

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           +  +      +    P  T      D +              A +  P       ++  +
Sbjct: 62  STHKNPEVQQILTRLPTYTPILTLADALYESIRSLGTGIDIMAMIKVPAPSLSMINEDCL 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L+ V D  N+G +LR+A A     I+ T   + + S    ++  GA   +      ++ 
Sbjct: 122 ILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQ 181

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + L  + +  F T   +       +       IA I+G EG+G+  +  +   +   L  
Sbjct: 182 EVLDHVETPLFATSSHTDTVIYQHD---LKSPIAWIMGHEGQGVCDELMQ-CATPIALPQ 237

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           P   ++LNV+ A ++ LY T     
Sbjct: 238 PNGQESLNVAIAGSLCLYETLRQRN 262


>gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
 gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++YG + V  AL     R++      +  L +               VP   +D ++ K 
Sbjct: 2   WIYGRNPVLEALREGRAREVLVARGVEGWLLKELDRL----GASYTLVPRIELDTLL-KT 56

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+A         +L+             LL+ LD + DP N GA++RSA+A    G
Sbjct: 57  THHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYGAMIRSALALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++ +R +   S +  K+++GA   +P IR+ NL  AL+++   G    GL    +K   
Sbjct: 117 VLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVWVYGLDLKGEKAPR 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      +AL++G+EG+G+R   +E+   +  + +    ++LN S A ++ALY   
Sbjct: 177 ELDFKRPLALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASVALSIALYQAA 232


>gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
 gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 12/230 (5%)

Query: 61  LNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L +   ++ +L      ++   +        H   ++    + +D  V   A HQG+   
Sbjct: 2   LKSAPGRVRELHVQRGRQDDRLQKIHKLAEQHGVTLQWATVKNLDDKV--NARHQGVIAL 59

Query: 118 TAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                +         ++   N  L +VLD V DPHN+GA LRSA       ++  K  S 
Sbjct: 60  CEEGQTHDEAFLLESMEKHGNKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSV 119

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             + V+ K A GA E +P + ++NLT  L+K+   G   +G + ++++ +        + 
Sbjct: 120 GLTPVVQKVACGAAESVPLVMVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLV 179

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++GAEGKG+R  T++    +A L M G + +LNVS A  V L+      
Sbjct: 180 LVMGAEGKGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229


>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
 gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
          Length = 294

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 3/240 (1%)

Query: 31  KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++      +S   S+ +   FL+G H V AAL NP+R+    L      A       L H
Sbjct: 40  REEPPRAPRSADRSKSDADNFLWGRHPVLAALANPARRGMGRLLATAERAAEIEQGQLAH 99

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNI 147
              ++ V  Q + +++   AVHQGLA +  PL   +L+        ++++LD + DP N+
Sbjct: 100 GHKIEVVEVQALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNV 159

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA+AF   GI+   R++P+ +  LAK+A GA E +P+ R++NL+ AL+++   G+
Sbjct: 160 GAIFRSALAFGARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGW 219

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +GL    ++ LE+ +      L++G+EG G+R    E    +A + MPG  ++LNVSN
Sbjct: 220 RAVGLDGTGEQTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279


>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 296

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 95/295 (32%), Gaps = 32/295 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR---------- 66
               A    N +  K      ++           + G   V  AL   +           
Sbjct: 2   KLPDAISSPNSKRVKNAVKLLKRHS-RKTMGQFLVEGPQAVREALERHAELGLPGQAPGV 60

Query: 67  ------------KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQ 112
                        + +L  T+ A               ++   +  + + ++        
Sbjct: 61  PDWVGSNADPRGAVIELFITEEAAEAHPEFVETVKDCDIRWNIITDEVLTELSATVNSQG 120

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            +A+     +  T    + +QL++VL  V DP N G I+R A A   D ++ T       
Sbjct: 121 VVAVCERIDVDLTSVIDKEAQLIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIY 180

Query: 173 SAVLAKSASGALEHIPYIR------ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           +    +S +G+L H+P +       ++ L  A                            
Sbjct: 181 NDKTVRSTAGSLFHVPVVTGVGLAEVTELARARGLQILAADANDQSHDIHHPWDSGLDLT 240

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +   + G E  G+R +  E   S A + + G  ++LN++ AA+V +Y   +N  
Sbjct: 241 ARTTWVFGNEAWGMRTEDLELCDSSAAVPIYGKAESLNLATAASVCIYESARNQR 295


>gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 249

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 138/233 (59%), Gaps = 6/233 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    +    + L+G H V AAL NP RK  +L AT+  +  LD +  LP  FPV+    
Sbjct: 5   RGSGRASTGQVRLWGRHAVEAALLNPERKHRKLWATREGIESLDGE--LPPDFPVEYADT 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +D++V ++A HQGL LE APL    L     +    + +++LD V DPHN+GAILRSA
Sbjct: 63  PDLDRLVARDAPHQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF    I+T  R++P ES V+AKSASGALE +P++R+ NL  AL  +   GF  IGL+ 
Sbjct: 123 AAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAG 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +++  L + I    +AL+LGAEG GLR        ++A L +   I++LNVSN
Sbjct: 183 EAEMTLAEAIPTGPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235


>gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 249

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+YG H    +L +     K++     ++ +              ++  P   +D++ 
Sbjct: 7   TEFVYGHHASVESLKSTQEINKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDELT 66

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+ L  A     ++D           +   ++LD + DPHN+G+ILR+A A  
Sbjct: 67  D-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAG 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   +A +AK+++GA+EH+P  R++NL + ++++        G       
Sbjct: 126 VHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDMAGDD 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y   N
Sbjct: 186 YRRWD-ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGYN 244

Query: 279 HFA 281
              
Sbjct: 245 SRN 247


>gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
 gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
          Length = 250

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 14/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQ---LLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103
           +L+G + +   L    +K+     L   +  + R   +         + ++ VPP+ +  
Sbjct: 2   YLHGRNVLREILKLEPKKLKIKKVLFTDQKNVDRELEELKEHTAKKGYRMEVVPPEKLFN 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  +E  HQG+ +        +L+        +   LL++LD + DPHN+GAI+RS+VA 
Sbjct: 62  LS-REKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDPHNLGAIIRSSVAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I T++ S  E        S  L     I          +           ++   
Sbjct: 121 GADGVIITEKASV-EVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKEEGFWTYAATMEG 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +P       DK ALI G EGKG+R   ++ +  +  + M   I +LNV+ +AA+ L+  +
Sbjct: 180 EPYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEYR 239

Query: 278 NHFA 281
             +A
Sbjct: 240 RQWA 243


>gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
 gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
          Length = 262

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 134/237 (56%), Gaps = 7/237 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++L+G+H V  AL NP R+  +L+ T NA  +L  DA        + V P+     +  
Sbjct: 26  TVWLFGLHAVRDALLNPKREKLRLVVTLNAHNKL-EDAITTSGITPEVVDPRKFSVPIDP 84

Query: 108 EAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            +VHQG ALE  PL    LD          +++LD V DPHN+GAILRSA       +I 
Sbjct: 85  GSVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIG 144

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223
           T+ +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+  
Sbjct: 145 TRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAV 204

Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY +  
Sbjct: 205 AGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLK 261


>gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 302

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T   S        + + G +  +P+              S     
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 210 IGLSSDSKKPLEQE-----------------------------------IKNDKIALILG 234
               S  +   ++                                       +++A++LG
Sbjct: 199 DKCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 273

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 10/258 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +    ++       G   +  A+      +  +L ++  L  L       
Sbjct: 17  DYTRLRDVQLRKSLEAEHGLFIAEGEKVIRRAVRAGY-PVRSVLTSRRWLEPLSDLLEGV 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV     + ++ + G       LA      L    + +  ++ ++VL+ + D  N+G
Sbjct: 76  Q-APVYLADERVLEGVAGFPVHRGALAAMARTPLPSVPELIAAARRVLVLEDLVDHGNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R A A   D ++ + R +        K + GA+  IPY R+ +    L  + + GF+
Sbjct: 135 AIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGFR 194

Query: 209 TIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPG-----II 260
            + L+ D       +      +++AL+LG+EG GL  +  + A     + M        +
Sbjct: 195 LLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGV 254

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV  AA++A Y    
Sbjct: 255 DSLNVVAAASIACYGLMR 272


>gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 265

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +         +     L G   +  AL++      ++    N   +    
Sbjct: 6   KNNPKVKEAVALKLNRS--RKGPLFLLEGFREIQKALSSGYE-CERIFYGTNVTEKERSF 62

Query: 85  ANLPHPFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            N     P++ V         +      +     +                     ++++
Sbjct: 63  FNRIQKMPLEKVYCSEETLSRLSYKEHHDNFIAVMKKRWWSRKEFLNQKKNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GA+LR A     DG++         +  + +S+ G +  +P    +      
Sbjct: 123 QVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLGTVFTLPIWSATLEEVLQ 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                     +     +      E  N  +AL+ G+E  GL         S   L M G 
Sbjct: 183 TLSEEKWQVFVTT-PRASSLYFCENYNQPLALVFGSEKDGLTSSWLNGDFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262


>gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           L2-6]
          Length = 268

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 120/264 (45%), Gaps = 15/264 (5%)

Query: 31  KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + M    ++ +   QP N   +YG + V+  L + S     LLA   A A   +   +  
Sbjct: 4   RNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAMAK 63

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDH 140
                VK V P  +  + G E+ HQG+A   + +   T++              L++ D 
Sbjct: 64  EAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLSDG 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + ++
Sbjct: 123 IEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIR 182

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
           ++   G             L +      IAL+LG+EG G+    ++    +  L M    
Sbjct: 183 RLKEQGVFVYCA-DMDGVSLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTAQG 241

Query: 259 -IIKALNVSNAAAVALYITQNHFA 281
             + + NVS AA + LY  Q+  A
Sbjct: 242 TGVDSFNVSVAAGIILYEIQSQRA 265


>gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 279

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 7/232 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
             + G   V  AL  P + + +L  T +A  R              V  V       +  
Sbjct: 28  FLVEGAQAVREALAAP-QAVHELFVTTDAAQRHPELVAAARTAGARVVDVTDGAAASLSD 86

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  +A+     +          QL+ VL  V DP N+G ++R A A   D ++   
Sbjct: 87  TVTPQGLVAVCDLLDVPLPQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAG 146

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSKKPLEQ 222
                 +    ++++G++ H+P  R  +    L    + G            D   P   
Sbjct: 147 DTVDPHNGKAVRASTGSVFHLPLARDRDAGAVLAACRAAGLVLLAADAHGELDLHDPAAD 206

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   ++A + G E  G+  +    A     + + G  ++LN++ AAA+ LY
Sbjct: 207 AVLGGRVAWVFGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258


>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
          Length = 229

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 15/232 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
                A     R+  +LL   N L RL           ++ +  + +D    + A HQGL
Sbjct: 3   RAFVEAYVLKGRQDDRLLPVLNELMRL--------GVSIQEMSRKALDDKA-EGANHQGL 53

Query: 115 ALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                P           + A     LL+VLD V DPHN+GA LR+A A     +I  K  
Sbjct: 54  IARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDK 113

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++   + Q      
Sbjct: 114 SAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGS 173

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+      
Sbjct: 174 LAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 225


>gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
          Length = 250

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                 +      V++VP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       D       L++LD + DPHN+G+ILR+A
Sbjct: 63  DRLVD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  LI+G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGVDYREWNAK-GKTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAYNSR 246


>gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 255

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           K    ++  N F+ G H   AAL +     K+F     K                 +  V
Sbjct: 2   KPVENNEENNDFVIGRHPAVAALRSQQTINKVFLQSGLKAEALDEIRQLAKKRHLVISEV 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149
           P Q +D +   +  HQG+AL  +     T+D + +           +VLD V DPHN+G+
Sbjct: 62  PKQKLDLLTDHQ-NHQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNLGS 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    GII  KR +   ++V+AK+++GA+E +P  R++NL + ++++   G   
Sbjct: 121 ILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGVWV 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G         + + K    ALI+G EGKG+    +ET   M  + M G +++LN S AA
Sbjct: 181 FGTDMAGTDYRDWDAK-GASALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASVAA 239

Query: 270 AVALY 274
            + +Y
Sbjct: 240 GLLMY 244


>gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
 gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
          Length = 287

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 9/247 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +           +  AL+     +   LA K  LA  +   +     P+   P + +
Sbjct: 40  YEPEEGLFITESPKVIERALDGGYEPV-SFLAEKGQLAEAEEILDRMEDVPIYVAPDEIL 98

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G               L    +  + ++ + +L+ V +P N+GA+ R A A   D 
Sbjct: 99  TKLTGYHLTRGLWCTMRRRTLPTIEEVCQGAKRIAILEEVVNPTNVGALFRCAAALGMDA 158

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI--------RISNLTDALQKMHSWGFQTIGLS 213
           +I T   S       ++ + G +  IP+                 L++M           
Sbjct: 159 VILTGGCSDPLYRRASRVSMGTVFQIPWTMLSKKDGVWPEQAMKTLKEMGFKTAAMALRE 218

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   Q    +K+A++LG EG GL   T         + M   + +LNV+ A AVA 
Sbjct: 219 DSVGIDDPQLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAF 278

Query: 274 YITQNHF 280
           +   +  
Sbjct: 279 WQLGHQR 285


>gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 275

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 11/279 (3%)

Query: 4   ISKKK--SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           ++     SE+I  L D    ++     DY  +   + + +   +           +  AL
Sbjct: 1   MTSPAPLSERIVELSDPADPRV----ADYTSLTDVSLRRKLEPERGLYLAESSKVLRRAL 56

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +   R        +  L  L  D    +  PV     + +++I G       +A    P 
Sbjct: 57  DAGHRP-RSFFMAEKWLDGL-RDVLEAYDVPVYVGADEVLEQITGFHLHRGAMAAMHRPE 114

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             P    + +++ + +L+ + D  N+GAI RSA A   D ++ T R +        + + 
Sbjct: 115 PLPLESVLASARRVAILEDIVDHTNVGAIFRSAAALDVDAVLVTPRCADPLYRRAVRVSM 174

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGK 238
           G +  +P++R+ + T  LQ++   GF T  L+                +K+ALILG EG+
Sbjct: 175 GTVFQVPWVRLEHWTADLQRVKDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQ 234

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL   T   A     + M   + +LNV+ A+AVA + T+
Sbjct: 235 GLGAATLHHADRHVIIPMSHGVDSLNVAAASAVAFWETR 273


>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 97/286 (33%), Gaps = 11/286 (3%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
            +   K+  +       +          +   +++    +       G   V  A  + S
Sbjct: 2   SRALPKVKKMASVSPELISPRSSRVAAARRLGKRN-FRGKERLFLAEGPQAVREAAAHRS 60

Query: 66  R---KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + +L AT +A  R              V       I  I         + +    
Sbjct: 61  AGAATLVELFATVDAAERYADIVGAARDAGARVHLASEDVIADISTTVTPQGLVGVCRFL 120

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                       +L+ VL HV DP N G +LR A A   + ++ T       +    +++
Sbjct: 121 DTPFEEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAE 236
            G+L H+P      +  A+  +   G + +       + L+ E          A + G E
Sbjct: 181 VGSLFHLPVAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTMGGPTAWVFGNE 240

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
             GL  +T+    ++  + + G  ++LN++ AAAV LY +     A
Sbjct: 241 AWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 286


>gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 318

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +  + G + V  AL +         Q     +   R             +   P   +D+
Sbjct: 74  SEMVVGRNPVFEALRDGVPATTLYVQQYIDNDERVREALQLAGERGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      +             L++ LD V DP N+GAI+RS  A
Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPEDLTSAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHFA 281
                A
Sbjct: 313 VARRRA 318


>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
 gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
          Length = 271

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+H   K  +S  +  R   +     + G  T++ A+    R                 
Sbjct: 7   SRHHPLVKFARSLRE-RRVRERERAFLVEGPKTIADAVQAGYRPSHLFYVPTRLDPLEQK 65

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      +  V  + + +I         +A+   P +   L         +++D +
Sbjct: 66  VVARAQAVGTRIIAVTERVLHEIAETMTPQAVVAVFPIPSIPFRL-PTAEPLFALIVDRL 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LRSA+      ++ T       +  + ++A+GA  H+P   +  +    + 
Sbjct: 125 QDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRAAAGAHFHLPIATLDPVAIQREF 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                   +     + +  ++       A+++G+E  G+  +    A     + + G ++
Sbjct: 185 PGLEI---VVARPQALRAYDERDWTRASAVVIGSEAHGISAELARLAADEVRIPLRGGVE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN   A ++ L+      
Sbjct: 242 SLNAGVAGSIILFEAARQR 260


>gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo]
 gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo]
          Length = 246

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 116/240 (48%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKTQNIKITKISINELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                + +  +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKVEKNKNVKTQTKDFENLLETFKKKENVFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT+++S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   +
Sbjct: 125 VITTQKHSAKDNSTVLRTSSGASQYVKKITVTNINNTINFLKKHGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+   T++ +  +  +   G I +LNVS +A + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLTKQNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQLN 244


>gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 279

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 7/260 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L   +         + ++ H  +       G + V+AAL+    ++ +L  +  A  R  
Sbjct: 14  LSERNPRVVSAVKLH-RAAHRRRTGLFLAEGANAVTAALDTG--RVRELFYSAAAAEREH 70

Query: 83  WDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                          V  +  + +         +A+     +       R+ +LL V   
Sbjct: 71  ELVATAAATGVRTTLVSDRAAEHLGETVTAPGLVAVCEQIDVPLPEVLARDPRLLAVPVE 130

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +P N G ++R A A   DG++         +    ++++G+L H+P +R   +   L 
Sbjct: 131 IAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPVVRGREVVPTLD 190

Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +H+ G          +       EI    +A + G E  GL P     A     + + G
Sbjct: 191 ALHAAGLTLLATAADGEVVLDEADEILAGPVAWLFGNEAHGLDPAVAARADHRVRIPIHG 250

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LN++ AAA+ LY +  
Sbjct: 251 RAESLNLAAAAAICLYASAR 270


>gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 260

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 5/256 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ +K ++S   K +  +  +  F+ G+  +  AL         +  T N     D 
Sbjct: 9   SKDNKSFKYLKSLLNK-KQRTLDKIFFVEGIKVLEEALKYKIPMYIAVSDTFNKSIVTDL 67

Query: 84  DAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 +   +         ++   E     +A      ++   +          LD + 
Sbjct: 68  ILKYQLNNVVIYYFKNTIFKQLTDTENSQGIIAYFKHIHINGINEIENGKY--AFLDDLQ 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++RSA AFS DGII   + +          ++ A      + I    + + K+
Sbjct: 126 DPGNVGGLIRSADAFSLDGIIL-SKNTVELYNPKLIRSTMASVFRVKLYIVESKNEILKL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF+ I  S ++ K   +   ++   +  G E KG+  +    +    ++ M   I +
Sbjct: 185 KEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIYIPMSEEINS 244

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ AA++  Y    
Sbjct: 245 LNVNVAASILFYEMNR 260


>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
 gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
          Length = 548

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
           L+G H   AAL    R I ++  T       +              V+ V    + ++ G
Sbjct: 232 LWGRHATQAALEAG-RPIHRIWCTSELRSSPKFLQLLREAKSSGVLVEEVTWARLGQLTG 290

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159
             AVHQG+AL+TA   +  L  +           LL+ LD + DPHN+GAI+RSA A   
Sbjct: 291 -GAVHQGIALQTASADTLDLPTLVEGCAALGEPPLLLALDGLTDPHNLGAIVRSAEALGA 349

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +    
Sbjct: 350 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAGEGDVT 409

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      +A++ G+EG+GL   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 410 LAEADLEGPLAIVTGSEGQGLSLLTRRHCDQLIRIPLRGVTPSLNASVATAMCLYEVARR 469


>gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380]
 gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 246

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106
            +YGV+ V  AL +  RK  +LL    A +       +A       ++++  + +D +  
Sbjct: 4   LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159
           + A HQG+AL         L+ + +         +++VLD + DPHN+GA+ RSA A  C
Sbjct: 63  EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKK 218
            GI+  K  S   +A   K+++GAL ++P  R++N+  +      +  +          +
Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        + L++G EGKGLR   ++   ++  + M G + +LN S A  VAL+    
Sbjct: 183 SLYDTDLRGNVVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLR 242

Query: 279 H 279
            
Sbjct: 243 Q 243


>gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 268

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 6/256 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY+ +   + +                 +  AL    R    +L  +  LA  D  A +
Sbjct: 15  ADYRDLTDVSLRRVTEPAGGLYIAESSKVLDRALRAGHRP-RSVLVQEKFLA--DALALV 71

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +  VP +  +++ G       LA    P+L+   D V  ++L++VL+ + D  NI
Sbjct: 72  GEDAEIYVVPAEIAERVTGYTVHRGLLASMHRPVLASVEDVVEGARLVVVLEDIVDHTNI 131

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA  RSA A   D ++ T R +        + + G +  +P+ R+   ++A   +H+ G 
Sbjct: 132 GAAFRSAAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLPEWSEAKPLLHAAGL 191

Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+               ++++AL++GAEG GL       A ++  + M G + +LN
Sbjct: 192 HLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTVVTIPMAGGVDSLN 251

Query: 265 VSNAAAVALYITQNHF 280
           V+ A+AVAL+      
Sbjct: 252 VAAASAVALWELGRGR 267


>gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland
           1988]
 gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28]
          Length = 221

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMV 137
                   V+ VP Q I+K+V     HQG+A + A      LD               ++
Sbjct: 16  LAKERKIQVQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFII 73

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DPHN+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+  
Sbjct: 74  LDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVR 133

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++++   G    G  +           +  +A+++G+EG G+    +E    + HL M 
Sbjct: 134 TMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMR 193

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G + +LN S AA++ LY      
Sbjct: 194 GKVTSLNASVAASLLLYEVYRKR 216


>gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
 gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
          Length = 293

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 2/219 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG H V  AL    RK+F + AT+ A  +L  +         + V  + + + +G  A
Sbjct: 61  VLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPEIAAA-GLTARLVAAEDLSRRLGPAA 119

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VHQG+ LE  P  +  + D    S +++VLD + DPHN+GAI R+A AF  D ++ T+R+
Sbjct: 120 VHQGVMLEARPFEALDISDIAPESGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTERH 179

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +P  + VLAK+ASG LEH+P I + NL  AL+ +   G+  +GL S+ +  L     +  
Sbjct: 180 APELTGVLAKAASGGLEHVPIIHVVNLARALRALKDQGYLRVGLDSEGESTLTDAPLSRP 239

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +ALILG EGKGLR  T+E    +A L MPG IK+LNVSN
Sbjct: 240 LALILGGEGKGLRRLTRENCDLVARLDMPGPIKSLNVSN 278


>gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
 gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
          Length = 256

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 15/244 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           YG+H + A L         L   +    ++  +        +   ++      + ++ G 
Sbjct: 8   YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQSIMAQARDNGISIQPTQKDKLTQLCGS 67

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+ L   PL           A R+  LL+VLD + D HN GA LR+AVA   D +
Sbjct: 68  P-QHQGVVLNARPLGFADEGLLDTLAGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLE 221
           I  K ++ S +  +AK + GA E +P + ++NL     +  ++  F      + + KP+ 
Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIH 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYITQ 277
                 K A+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY   
Sbjct: 187 AADLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246

Query: 278 NHFA 281
               
Sbjct: 247 RQRT 250


>gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
 gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
          Length = 318

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 13/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70
           S +  H      N +  +         R  ++  +  + G + V  AL +         Q
Sbjct: 40  SARKGHKKNRVANAQARQAAARRPAPRRGGAKGTSEMVVGRNPVYEALRDGVPATTLYVQ 99

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++      HQGL L+  P      +  
Sbjct: 100 QYIDNDERVRECLQLAGERGNINLMEAPRPELDRMTKGL-NHQGLVLQVPPYEYAHPEDL 158

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 159 TAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  +E  E  +  + +++G+EGKGL 
Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLSGPVVIVIGSEGKGLG 278

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY      A
Sbjct: 279 RLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRRA 318


>gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
          Length = 258

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 24/252 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99
            + G H +   L     KI +            + +    +   +A       ++    Q
Sbjct: 4   IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKQDNQ 63

Query: 100 TIDKIVG----KEAVHQGL---------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
            +D I      +   H+G+             +        A ++S  +++LD V DPHN
Sbjct: 64  FLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAKLAEKDSGFVVILDSVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+I+RSA  F  DGII  +  S     +++K ++GAL  +P++ ++NL   ++++   G
Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +   K L       K  LI+G+EG+G+    +ET   +  +   G + +LNVS
Sbjct: 184 FWIYGADAV-GKALPDLTFPKKTVLIMGSEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242

Query: 267 NAAAVALYITQN 278
            AA + LY    
Sbjct: 243 VAAGILLYEISR 254


>gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 269

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 15/265 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    +       G + V+AAL     ++  L  T+ A  R  +  ++
Sbjct: 9   PRIVNAAKLH-RAATRRKTGRFLAEGENAVTAALARG--EVLDLYVTEAAWERFPFLQDV 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDP 144
                V  +  +  D +          AL    ++        AV+NS L+ V    N+P
Sbjct: 66  TS-THVHLITERAADHLSETVTHTGLFALCANQMVDDDALIASAVKNSPLIAVPVETNEP 124

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G I+R A AF   G++        +     ++++G+L ++P  R +++ + ++K+H 
Sbjct: 125 GNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPVARNTSVVEVVEKLHE 184

Query: 205 WGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             FQ         ++          +     A + G E  GL     + A     + M G
Sbjct: 185 AEFQILATAADGDVNLHEAADPANGMLAQPTAWLFGNEAHGLGD-WLDLADIRVSIPMQG 243

Query: 259 IIKALNVSNAAAVALYITQN-HFAK 282
             ++LN++ AA+V LY +     AK
Sbjct: 244 QAESLNLATAASVCLYESSKAQIAK 268


>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 332

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 11/277 (3%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKI 68
           K  + ++ + A   +     + + S + +    +  +   + G ++V  AL    P+   
Sbjct: 49  KRKAAEERYAAAGGKGRPGVRAVGSNSNRKSPKASDDTETVTGRNSVLEALRAKIPATAF 108

Query: 69  FQ-LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-- 125
           +       +   +           PV  V    +D++ G + VHQG+AL+  P       
Sbjct: 109 YIAQRVEMDDRVKEMLSIATNRGIPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQ 168

Query: 126 -----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +       LL+ LD V DP N+GAI+RS  AF   G+I  +R S S ++   K++
Sbjct: 169 DLLEQIIDRGEVPLLVALDGVTDPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTS 228

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKG 239
           +GA   IP    +NLT  L++    G   +GL+ D    L      +  + +++G+EGKG
Sbjct: 229 AGAAARIPVALAANLTATLKEFKKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKG 288

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L     ET   +  + +    ++LN   AA+VALY  
Sbjct: 289 LSRLVTETCDQVVSIPISTATESLNAGIAASVALYQV 325


>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
 gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
          Length = 504

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIV 105
            L+G H   AAL    R I ++  T +  +                 V+ V    + +I 
Sbjct: 182 LLWGRHATQAALEAG-RPIHRIWCTSDMRSAPRFLGLLREAKASGVLVEEVTWARLGQIT 240

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFS 158
           G  AVHQG+AL+TA   +  L  +           LL+ LD + DPHN+GAI+RSA A  
Sbjct: 241 G-GAVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNLGAIVRSAEALG 299

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +   
Sbjct: 300 AHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGYRVVGLAEEGDL 359

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      + ++ G+EG GL   T+     +  + + GI  +LN S A A+ LY    
Sbjct: 360 TLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASVATALCLYEVAR 419

Query: 279 H 279
            
Sbjct: 420 R 420


>gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
            +  F++G H     L    + +I ++                        V+T P   +
Sbjct: 4   NDKDFVFGRHAGLDFLKTQSADRINKVFLQHGVQEDFANQVYALAKKKRLVVQTAPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      LD        V     L++LD + DPHN+G+ILRSA
Sbjct: 64  DRLVA-GGNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPHNLGSILRSA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D II  KR++   ++V+AK+++GA++++P  R++NL    + +   G+   G   
Sbjct: 123 DATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKRGYWIFGTDM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +    N K  L++G EGKG+ P  ++       L M G +++LN S A  + LY
Sbjct: 183 KGTDYRQWN-ANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQSLNASVATGILLY 241

Query: 275 ITQNHFA 281
              N   
Sbjct: 242 QMLNSRN 248


>gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 253

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG   V AAL++   ++ +++  +    A+     +A       V+      +  + G 
Sbjct: 14  VYGRKPVLAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGN 73

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
               QG+  +        L     D     + +++LD +  P N+G ILR+A A   DGI
Sbjct: 74  GRHDQGVLADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGI 133

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +   R   S   ++ K+++G   H P +R      A + +   G+    L + +++ + +
Sbjct: 134 VVPHRGVASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYE 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +   +LG+E  GL    Q        + M G +++LNV++AAAV  +       K
Sbjct: 194 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 253


>gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 275

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           +  AL+     I  L+  K    +         
Sbjct: 18  FARLTETQLRNRLEPEMGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQARGIITRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P L    +   ++  + VL+ + D  N+GA
Sbjct: 78  DIPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--------IRISNLTDALQK 201
           I RSA A   D ++ T            + + G +  +P+                 L+K
Sbjct: 138 IFRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRK 197

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +                   Q +  +K+A++LG+EG GL P T       A + M   + 
Sbjct: 198 LGFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVD 257

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ A+AVA +  +
Sbjct: 258 SLNVAAASAVAFWQLR 273


>gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 261

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 5/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA  +    + ++  T+ A  R +      H  PV  V  +   
Sbjct: 21  RRRANRFLAEGPNLVEAA--SARGLVREVFVTEVAAQRHETWLA-GHDAPVHLVTERAAK 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P         R+ +L+     +++P N G ++R A A     +
Sbjct: 78  ALSDTVTPAGLVAVCDIPTTRLDDVLTRSPRLIATAVEISEPGNAGTLIRIADAMGAAAV 137

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G++ +IP + +++   A+  +   G Q +  + D +  L+ 
Sbjct: 138 ILAGHSVDPYNGKCLRASAGSIFNIPVVAVADTHAAIVSLRGAGLQVLATAVDGETSLDD 197

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A + G E  GL  +    A     + M G  ++LN++ AAA+ LY +    
Sbjct: 198 ADPLLGVATAWLFGPESHGLSAEIAGAADHRVRIPMSGRAESLNIAAAAAICLYQSARAL 257

Query: 281 A 281
           +
Sbjct: 258 S 258


>gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1]
          Length = 263

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 12/253 (4%)

Query: 34  QSFNQKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWD 84
           Q F+Q S    + +  F     +YG + V  AL +P   I +L  +K+            
Sbjct: 10  QRFHQDSDEYLKKKAFFDKVLTIYGRNAVLEALEDPDITIHKLHLSKSNKDAPVLEQMKK 69

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVLDHV 141
                   V+     ++ +I       QG+AL+             +   +  ++ LD V
Sbjct: 70  IASKRGIEVQYHDKASLSRISKNAKQDQGVALDIVLEHFGDEKDFISKNINYRIIALDGV 129

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+RS  A + D I+   + +   S ++ K++ G L  +  I+ SNL + L+ 
Sbjct: 130 TNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSNLKETLKH 189

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G     LSS + K  +++I ++K   +LG E +G+ P  ++   +   + M   ++
Sbjct: 190 FRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAIPMQRGVE 249

Query: 262 ALNVSNAAAVALY 274
           +LNV+  A++  +
Sbjct: 250 SLNVAVTASLLAF 262


>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
 gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
          Length = 258

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 19/250 (7%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           YG+H V + L +       L         +A      +    +   ++      + K+  
Sbjct: 8   YGIHAVQSILQHRGIDGLTLFIQDGKKQDDATVANITELAQTYGIAIQISAKDKLTKLAE 67

Query: 107 KEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                  +       L    D           R   LL+VLD + DP+N+GA LR+AVA 
Sbjct: 68  SPQHQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVAM 127

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K +S S +  +AK A GA+E +P+I+++NL   L  +   G    G + D  
Sbjct: 128 GVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDDT 187

Query: 218 KPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVA 272
               Q+      +A+++G+EG G+R  T +T   + ++ MPG     I++LNVS A  + 
Sbjct: 188 AKPVQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMV 247

Query: 273 LYITQNHFAK 282
           LY       K
Sbjct: 248 LYEASRQRFK 257


>gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
 gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 93/253 (36%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       +RH  +           +  AL+     I  LL   +   +     +   
Sbjct: 18  YARYSEVQLLNRHEPEKGVFIAESPKVIGRALDAGCVPISLLLERAHVEGQGKEIISRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G +     L     P L       R ++ + VL++V +P NIGA
Sbjct: 78  EIPVYTAEFDVLTKLTGFKLTRGMLCAMYRPKLPAVEAVCRGARRIAVLENVMNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------ 203
           I RSA A + D ++ T   S        + + G +  +P+  +         M       
Sbjct: 138 IFRSAAALNMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLG 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                        +    + +  D++ALILG EG GL  +T         + M   + +L
Sbjct: 198 FKTAAMALSDESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSL 257

Query: 264 NVSNAAAVALYIT 276
           NV+ A+AVA +  
Sbjct: 258 NVAAASAVAFWQL 270


>gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 257

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 26/277 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I   ++EKI                  K +      +R   +     + G      A  
Sbjct: 1   MIESLQNEKI------------------KHLTRLLTDNRFRKKSGTFAVEGKQENERARK 42

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                +   L          +D + P    +  V  +  +K+  + +    + +      
Sbjct: 43  FGYEPVEYFL------CESIFDEDFPAG-KISLVSEKVYEKVAYRGSSEGIIGIYNTKSF 95

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +    A++    +++++ V  P N+GA+LRS  AF  D +I T       +  + +S+ G
Sbjct: 96  NLNAFAIKEDSSVIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVG 155

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L  +   +  N         +         SD    +  +    + AL+ G E  GL  
Sbjct: 156 CLFGMDIFQSENNALLDFLESNHFKIFTTRMSDDATDIFNQDFGGRSALVFGTEHSGLSD 215

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 T+   + M G I +LN+SNA AV+ Y     
Sbjct: 216 FWIGKGTNTL-VPMTGSIDSLNLSNAVAVSGYEILRQ 251


>gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
 gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
          Length = 229

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 12/236 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + ++        + G H    A    ++ +  +  T+ A+ RL        P     V  
Sbjct: 3   QKKYRKSS--YLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPEEAIVVTD 53

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + ++   +   QG+  E A   +   D  +   L++  + V DP N+G ++R+A A +
Sbjct: 54  DVLKELTDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAAN 110

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +  +++ +   +    +S  G+  H+P  R+                     S+   
Sbjct: 111 FDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSV 170

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 171 NYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226


>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 241

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 18/250 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +K ++    K ++  +     +     +  A+ + +  I  L   +        
Sbjct: 5   SQANPKFKLIKKLRNK-KYRDKEGLFVIESRKLIEEAIKSNAD-IDFLFLREG------- 55

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             +     P   V  + +   + +     G A       +  L + R    +++LDH++D
Sbjct: 56  -ISFEGNIP-YLVFDENLFAKLSELKSPDGYAAVIRKKEACDLKSDR----ILLLDHISD 109

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA AF    II TK      +    +++ G++     + +S       K +
Sbjct: 110 PGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVELSLEEIRKLKKN 169

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                +     D +K       ND I L +G E  GL    ++       + M G I++L
Sbjct: 170 YRFLSSHMEGIDVRKYDSS---NDSIILAIGNEANGLSEDIRKLTDDFIKISMQGKIESL 226

Query: 264 NVSNAAAVAL 273
           N + AA++ +
Sbjct: 227 NAAIAASIMM 236


>gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 265

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 92/263 (34%), Gaps = 11/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARL 81
            +   K++     +       +   + G   +  A +     +  L              
Sbjct: 2   QNPKVKQILHLRDRP-ERDISQTFLIEGYRELLRAADADWE-VNLLFICPALFLGMNEPT 59

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMV 137
             +        +     +   KI  ++     LA+     L+            +   +V
Sbjct: 60  LIERLTSRGTELFYCSEKVFRKISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVV 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            + +  P N+G ILRS+ A   DG+I   R +   +  + +++ G L  +P +      D
Sbjct: 120 AEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEARGE-D 178

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  ++  G   +  +  ++K   Q      +A+ +G E  GL  +  + AT    + M 
Sbjct: 179 ILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMM 238

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G+  +LNV+ A  + LY      
Sbjct: 239 GVADSLNVAMATTLLLYEVLRQR 261


>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 325

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 12/251 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDW--DANLPHPFPVKTVP 97
           R         + G + V   L          +    +A  R+             +  VP
Sbjct: 72  RRGDGEGPETVLGRNPVVECLRAGVPSTALHVATGMSADERVAEAVSLAAEQGISILEVP 131

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAI 150
              +D++ G  A+HQGLAL+  P      D             L + LD V DP N+GA+
Sbjct: 132 RNDLDRLTG-GALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDGVTDPRNLGAV 190

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  L++  S G   +
Sbjct: 191 VRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGLMVV 250

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL++D    L++       +AL+ G+EGKGL    +ET      + + G +++LN S A 
Sbjct: 251 GLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNASVAT 310

Query: 270 AVALYITQNHF 280
            V L       
Sbjct: 311 GVVLAEVARRR 321


>gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
 gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
          Length = 333

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 28/304 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +      R      ++ +  +  + ++      ++G ++V  AL   
Sbjct: 28  TPKAEDRVYHKAYAAKKAADRRKMSDPRLAARRRADKFSTGNTTDLVFGRNSVLEALRVG 87

Query: 65  SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        H   +       +D+I  + + HQG+ L+  P
Sbjct: 88  -VPSNTLYVMSRIEHDDRTREIVKIASAHGLRMMEADRLEMDRIA-RSSNHQGVILKVEP 145

Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L                       +    L + LD V DP N+GA++RSA AF  
Sbjct: 146 YQYSSLAELADRADKKSRAMEAANSAAARISARPLFIALDGVTDPQNLGAVIRSAAAFGA 205

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ + + G+  +GL     K 
Sbjct: 206 NGVILPERRSASVTAAAWKVSAGAAAHLPVCRVVNLTKAIEALKARGYYVVGLDGGGDKL 265

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +     D + ++LG+EGKGL    +E   ++A + +   +++LN S AA ++LY   N
Sbjct: 266 VGETGFETDPLVVVLGSEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLYAVAN 325

Query: 279 HFAK 282
              K
Sbjct: 326 ERRK 329


>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 252

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 9/247 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           +      + +   +     + G  +++   ++    I  +  T     ++D         
Sbjct: 8   QFVKSLHQKKFRKEHGLFIVEGFKSITDFFHSDY-VIHSIYYTPKVGPKIDI---FGEKI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               +  + ++ I   +     +AL   P      +     Q  +VLD + DP N+G I+
Sbjct: 64  KHYPISERDLEAISTLKTPQGIVALIETPSEVAVQEDELRDQFSLVLDTIQDPGNLGTII 123

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A  F    II ++      +  + ++  G+L H+                      + 
Sbjct: 124 RTADWFGIKHIICSEETVECFNPKVVQATMGSLAHVSIHYTDLHAFLKNVTLPSFATVLD 183

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             S  +     E       +ILG EG G+ P      T    +   G  ++LNV+ +AA+
Sbjct: 184 GQSIYETDFGSEGF-----IILGNEGNGIAPDLISNKTQRITIPSFGNAESLNVAVSAAI 238

Query: 272 ALYITQN 278
                  
Sbjct: 239 CCSEISR 245


>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter
           arcticus 273-4]
          Length = 256

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 15/244 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           YG+H + A L         L   +    ++  +        +   ++      + ++ G 
Sbjct: 8   YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQAIMAQARDNGISIQPTQKDKLTQLCGS 67

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+ L   PL           A R   LL+VLD + D HN GA LR+AVA   D +
Sbjct: 68  P-QHQGVVLNARPLGFADEGLLDTLAGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLE 221
           I  K ++ S +  +AK + GA E +P + ++NL     +  ++  F      +   KPL 
Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADAKPLH 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYITQ 277
                 KIA+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY   
Sbjct: 187 TADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246

Query: 278 NHFA 281
               
Sbjct: 247 RQRT 250


>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 114/278 (41%), Gaps = 27/278 (9%)

Query: 25  RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNAL 78
           R     KK     ++S       QPE   ++G+H V+  L      + +L       +  
Sbjct: 19  RLKPGMKKKVVSRKESGQRWPADQPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGR 78

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------ 126
                +    H  P   +    +      E  HQG+A   AP    +L            
Sbjct: 79  VAAIVELAASHRIP---LDRAGL-PPAAAELPHQGVAARVAPPSPLSLAELLQRLPALGP 134

Query: 127 -----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                 A     LL+VLD + DPHN+GA+LRSA AF  DG+I  K  S   S  + K+A+
Sbjct: 135 APASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAA 194

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G    +   R +NL  AL  +   GF   G S ++   L +        L+LG E KG+R
Sbjct: 195 GTAALLDICRTTNLAGALGTLKKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIR 254

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           P  ++    +  + +   +++LNVS AA + L   +  
Sbjct: 255 PLLKKHCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRR 292


>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 126/310 (40%), Gaps = 34/310 (10%)

Query: 1   MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLF------- 50
           M +I   + +KI +   ++   K R    + ++        R T +   E+         
Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATESTIPKIVGEG 299

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQ 99
           +YGV  V AAL+   R+ + L   +                 +    L     +      
Sbjct: 300 IYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDLS 359

Query: 100 TID-KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             D  +V     HQGL L+ +PL         P L       L + LD V DP N+GAI+
Sbjct: 360 KHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAII 419

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G+Q +G
Sbjct: 420 RSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLG 479

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVS 266
            S   +     EI       L+LG+EG GLRP  + + T +  +         +++LNVS
Sbjct: 480 GSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLNVS 539

Query: 267 NAAAVALYIT 276
            AA V L+  
Sbjct: 540 VAAGVLLHHL 549


>gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 246

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R +                     +  + G H    A
Sbjct: 1   MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  +  +   ++   R+   +       V  V P+ + ++       QG+  E A 
Sbjct: 40  EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAELAM 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  D      L++  + V DP N+G ++R+A A   DG++ +++ +   +    +S 
Sbjct: 92  PSLPLADLKAGRYLIL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R        +  +          S      +    N   AL++G EG G+
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTVEHNGDFALVMGNEGNGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
 gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
          Length = 233

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL N  + I +L  +K+               +   V+ V  Q +D++      HQG+
Sbjct: 1   MEALENN-QTINKLYLSKSLAKNRAQQFRQTAEKNKIVVQEVDNQRLDELTNH-GNHQGI 58

Query: 115 ALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           A+  A      LD +      +   L++LD + DPHN+G+ILR+A A   DGII  KR +
Sbjct: 59  AISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              + V+AK+++GA+E++P  R+ N+ + + K+    F   G         +    +  +
Sbjct: 119 VQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANFWIFGTDMKGADYNDWN-ADGPV 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A+++G EGKG+  +T++    M  + M G +++LN S AAA+ +Y   N  
Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQGFNSR 228


>gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           DSM 20016]
 gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 249

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
                 F+ G H    AL +     K+F     K                 V  VP   +
Sbjct: 2   KNENTDFIIGRHPAVMALKSDQEINKVFIQSGLKADAISQIVKLAKERHLVVSNVPKNKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D +  ++  HQG+ L  A     T+D               ++LD + DPHN+G+I+R+A
Sbjct: 62  DLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPHNLGSIMRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   G    G   
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K     +  +  +AL++G EGKG+    ++T   M  + M G +++LN S AA++ +Y
Sbjct: 181 KGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 239

Query: 275 ITQNHF 280
              N  
Sbjct: 240 QGFNSR 245


>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 271

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 17/264 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +++   +S    +     + G   V  A+   S ++  +  T +A AR        
Sbjct: 8   RVKAVRALASRS-VRRRTGTFLVEGPQAVREAVAPGSPRVHDVYVTVDAAARYPEIVAAA 66

Query: 89  HPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V+   P  +D +         +  +    L   L   R  +L+ VL HV DP N
Sbjct: 67  RDVGARVRNGTPDVLDAMSADAQGVVAVVDQVGAGLDDVL--TRRPRLVAVLAHVRDPGN 124

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-- 204
            G +LR+A A   D ++ T       +    +S +G+L H+P +    L DA+  + S  
Sbjct: 125 AGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLPVVPGPELPDAVGALRSAG 184

Query: 205 ----------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                            L      P      +   A + G E  GLR +    A +   +
Sbjct: 185 LTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAWVFGNEAWGLRDEDLALADATVRV 244

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            + G  ++LN++ AA V LY +  
Sbjct: 245 PLRGRAESLNLATAATVCLYASGR 268


>gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 246

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 104/276 (37%), Gaps = 31/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R +                     +  + G H    A
Sbjct: 1   MTIITSKSNNLIKKTKKLLKKKYRDH---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  +  +   ++   R+   +       V  V P+ + ++       QG+  E A 
Sbjct: 40  EKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEVLKELTD-SKTPQGIIAELAM 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  D      L++  + V DP N+G ++R+A A   DG++ +++ +   +    +S 
Sbjct: 92  PSLPLADLKAGRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R        +  +          S      +    N   AL++G EG G+
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLDVPLIATTLSKESVDYKTIEHNGDFALVMGNEGNGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 210 SELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans]
 gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans]
          Length = 407

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 96/294 (32%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   + + + + G   +  AL    +    L + K+
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKKQQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +   A L     +  VP   +            +A+   P        +   Q
Sbjct: 168 QLALVKEEVGVAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P                   D      +   Q    ++ +    + +       LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+  +               ++ +   I +LNV++A  + L+  +    +
Sbjct: 348 GESHGVSEEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401


>gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
 gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
          Length = 265

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 140/238 (58%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNAL +L  DA        + V
Sbjct: 14  KERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKL-EDAVAACGMAPEVV 72

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILR 152
            P+  D  + + +VHQG AL+  PL    L  V  S     L+++LD V DPHN+GA+LR
Sbjct: 73  EPRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLR 132

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL DA+Q++ + G+  +GL
Sbjct: 133 SAEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGL 192

Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +++  L Q +       I L+LGAEG GLR +T+ET   +  +   G   +LNVSN
Sbjct: 193 DGEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250


>gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
 gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
          Length = 252

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  LYG + V  AL    R     +      ++ +             P++ +  Q +D+
Sbjct: 3   SELLYGRNAVREALRARRRTLRRLVVSRSVQESGIIADIIRLAEQAGIPIERIERQILDR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + ++A HQG+ LET P     LD         R + LL++LDH+ DP N+G +LR+A A
Sbjct: 63  QL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQDPQNLGTLLRTAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSD 215
             C GII   R +   +  +  ++SGA+EH+    ++NL+  +++  H+  +       +
Sbjct: 122 VGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQHNGIWVVGLEQDE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + ++    N  + L++GAEG G+    +E    +  L + G I +LN + A ++A+Y 
Sbjct: 182 TAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGSLNAAVAGSIAIYH 241

Query: 276 TQNHF 280
                
Sbjct: 242 AWRQR 246


>gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
 gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
          Length = 269

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 50  FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             +G + V   L +     RK+F L   ++               P+  V  + ++++ G
Sbjct: 23  LCWGRNPVLTLLEHRPELCRKVFLLAGAQDEFRDTVARLCADGRIPLDFVEREELERLSG 82

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG+A   AP+    LD        +   L+++LDH  DPHN+GA++R+A      
Sbjct: 83  -GAVHQGVAARVAPIPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAA 141

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++     S + +  + K+++GA   +P  ++ N+  A++++   GF  +GL   + + +
Sbjct: 142 CVVCQNDRSATVNGTVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETV 201

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 +++AL++G+EG+G+   T +    +    M G    LN S AAA+ ++    
Sbjct: 202 WSSALPERLALVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFEWVR 259


>gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
          Length = 252

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 18/262 (6%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
            S + +      + ++  K ++S  +K ++  +     L G+  V  A+ N +  I  ++
Sbjct: 3   KSKRKAMIT--SKTNKIIKLVKSL-EKKKYQDKYGLYVLEGIKFVKDAVINKNHIIKYII 59

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            T+      D             V  +    I   +     LA          ++ +  +
Sbjct: 60  TTEEYTEDYDDAL---------EVDNEIFKYISSTKTPQGVLA--VLETKYCDINDINKN 108

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++ LD V DP N+G ++RS+V    D +I     SP  S  +  SA   +     +  
Sbjct: 109 DNILYLDTVQDPENVGGLIRSSVCTDFDAVILNSSASPFLSKAVRASAGSIINTKIILDE 168

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                   K   +      L+      L          LI+G EG G+  +  + AT   
Sbjct: 169 DYKILKTLKEKGFDIIASTLNGKEDITLN----KKNNVLIVGNEGNGISDECLKYATKEV 224

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LN + + ++ +Y
Sbjct: 225 KIPMSGKCESLNANVSGSILMY 246


>gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
 gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
          Length = 258

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 138/239 (57%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NPSR+  +L+ TKNA  +L+           + V
Sbjct: 10  KEQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEAAIA-ASGITPEEV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAIL 151
            P+  +  +   +VHQG ALE  PL         L   R +  +++LD V DPHN+GAIL
Sbjct: 69  DPRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +G
Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLG 188

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+ +++  +E  +   ++  +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 189 LAGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
          Length = 274

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 7/257 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH              +  AL+     I  L+  K+  ++         
Sbjct: 18  YARLTEGQLLNRHEPDKGVFIAESPKVIERALDAGCVPISMLMEKKHVESQAREIIQRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV       + ++ G       L     P L    +    ++ + VL++V +P N+GA
Sbjct: 78  EIPVYAAEFDVLTQLTGFHLTRGMLCAMYRPPLPGPEEICEGARRIAVLENVMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A + DG++ T   S        + + G +  IP+  + +     Q+   +  + 
Sbjct: 138 IFRSAAALNMDGVLLTSACSNPLYRRAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLREL 197

Query: 210 IGLSSDSKKPLEQE-------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++      +         +  +K+A+ILG EG GL   T         + M   + +
Sbjct: 198 GFATAAMALNDDSVSIDDSGLMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDS 257

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A+AVA +     
Sbjct: 258 LNVAAASAVAFWQLGRR 274


>gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 229

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 11/232 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG ++V  AL      I ++   K  + +     N      ++ +  Q ++++V K  
Sbjct: 4   LIYGKNSVLDALKAN-FPIAKIYLQKGLVNKAITFKN------IEYLSIQEMNQLV-KNG 55

Query: 110 VHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E        L         L+++LDH+ DPHN GAI+R+A  F    II  K 
Sbjct: 56  NHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKN 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            +   +  + K +SGA   I  IR+ +L D   +   +  +       D    L +    
Sbjct: 116 RACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIYSSTLDDKATKLHKTKFA 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               LI+G E  G+     + + ++ ++   G +++LNV++A AV LY    
Sbjct: 176 TPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEATK 227


>gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 310

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 87/254 (34%), Gaps = 6/254 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + R           G   +  A     R    L+            A+L
Sbjct: 48  RDYVGLTDVALRRRREPAEGLFIAEGEMVIERARRAGYRPRSLLVGPAKVATVP---ADL 104

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV    P  +  I G +     LA       +P  D +  ++ ++V + +    N+
Sbjct: 105 EPGVPVYLAGPDVLATITGFQVHRGALASMCRRPPAPAADVLATARRVLVCEDIVSHTNL 164

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHS 204
           GAI RSA     D ++ +   +        + + G   A+ +            L K   
Sbjct: 165 GAIFRSAAGLGMDAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLLVKHGF 224

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   ++            D++AL+LG+EG GL       AT    + M   + +LN
Sbjct: 225 MLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRIPMAHGVDSLN 284

Query: 265 VSNAAAVALYITQN 278
           V+  AA+A Y+   
Sbjct: 285 VAATAAIACYVLGR 298


>gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 297

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     +++   +           +  AL+   + +  L+  +              
Sbjct: 40  YARLTEAQLRNKLEPEKGVFIAESPKVIGTALDAGYKPLSFLMERRQIEGPAAGVLARCP 99

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V T     ++ + G       L     P      +  RN++ + VL+ + D  NIGA
Sbjct: 100 DATVYTADRAVLESLTGYALTRGVLCAMHRPAPRTAEEVCRNARRVAVLEGIVDSTNIGA 159

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +            + + G +  +P+ R+        +        
Sbjct: 160 IFRSAAALGMDAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGLARLHA 219

Query: 210 IGLSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +G ++ +    ++            +K+A++LG EG GL  +T     +   + M   + 
Sbjct: 220 MGFTTAAMALDDRALPVDDPALQAAEKLAIVLGTEGDGLAAETIARCDATVMIPMQHGVD 279

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV  AAAVA +  +
Sbjct: 280 SLNVGAAAAVAFWQLR 295


>gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 268

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 101/254 (39%), Gaps = 7/254 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++ +  + +   + G + V AA++  +     +  T+ A  R       
Sbjct: 14  PRIVNAAKLH-RAANRKKAKQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFADIVTA 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDP 144
                V    +  +    +          AL ++  L           +L+ V    ++P
Sbjct: 71  CGYMDVYVHPITDKAAKHLADTATTTGIFALCSSSALWSAGKILNGKPKLISVPVLTSEP 130

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ++R++ A   DG+I          + +A++++G+L H+P  R  N+ D L ++  
Sbjct: 131 GNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRK 190

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +  ++D +  L         A + G E  GL  +  E A     + + G  ++LN
Sbjct: 191 SGMQIVATAADGEVELADADLTQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLN 249

Query: 265 VSNAAAVALYITQN 278
           ++ AA++ LY +  
Sbjct: 250 LATAASICLYESAK 263


>gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 285

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + D H  +L     DY ++     + +  ++           +  A+    R    +LA 
Sbjct: 5   ITDIHDDRLS----DYVRLTDVALRKKLETENGLYMAESSKVIQRAIAAGHRP-RSVLAD 59

Query: 75  KNALARLDWDANLPHP------FPVKTVPPQTIDKIVGKE----AVHQGLALETAPLLSP 124
           +  LA L                PV     + + +I G      A+        A   + 
Sbjct: 60  ERWLADLAPSLTKAGGDGEGGDIPVYVCDEEKLQEIAGFHLHRGAIAAMNRPALADPRAM 119

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                     ++VL+++ D  N+GAI RSA A   D +  T   +        + + G +
Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179

Query: 185 EHIPYIRISNLTDALQKMHSWGF--------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +P+ RI     + + +   G+                  +      K+ KIA+ILGAE
Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAE 239

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GLR  T         + M G + +LNV+ A AVA +  +
Sbjct: 240 GDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280


>gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 292

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 102/304 (33%), Gaps = 35/304 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+      I S+ D   A        Y  +     ++R   +           +  A
Sbjct: 1   MQFIT------IDSIDDERVA-------AYTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47

Query: 61  LNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L      I  L         +      D       PV    P+ + ++ G       L+ 
Sbjct: 48  LAAGREPISLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALSA 107

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L    +  R+++ + V++++ D  N+GA++RSA A   D ++ T           
Sbjct: 108 MRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRA 167

Query: 177 AKSASGALEHIPYIRISNLTDAL------------------QKMHSWGFQTIGLSSDSKK 218
           A+ + G +  IP+ RI                           +         L+     
Sbjct: 168 ARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLNN 227

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E     DK+ALI G EG GL   T   A     + M   + +LNV+ ++AVA Y T  
Sbjct: 228 SPESADHIDKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYATSP 287

Query: 279 HFAK 282
             A+
Sbjct: 288 KRAE 291


>gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 244

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         +        +   L+++LD ++DP+N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A +       +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
 gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
           CNB-440]
          Length = 373

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L      I   +      +                +  
Sbjct: 119 RRTNPAKDAPELLVGRNPVLESLRANVPAIALYVAQGLNTDDRISEIVRTAADRGIAMLE 178

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
           V    +D++ G   +HQG+ L+  P      +        + + LL+ LD V DP N+GA
Sbjct: 179 VSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLGA 237

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF  
Sbjct: 238 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVV 297

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L         + +++G+EG+GL     +T      + M   +++LN S A
Sbjct: 298 VGLDADGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVA 357

Query: 269 AAVALYITQNHFA 281
           AAV L       A
Sbjct: 358 AAVTLAEVARRRA 370


>gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
 gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
          Length = 249

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 11/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
                 F+ G H    AL +     K+F     K                 V  VP   +
Sbjct: 2   KNENTDFIIGRHPAVMALKSDQEINKVFIQSGLKADAISQIVKLAKERHLVVSNVPKNKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D +  ++  HQG+ L  A     T+D               ++LD + DPHN+G+I+R+A
Sbjct: 62  DLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPHNLGSIMRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   G    G   
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K     +  +  +AL++G EGKG+    ++T   M  + M G +++LN S AA++ +Y
Sbjct: 181 KGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 239

Query: 275 ITQNHF 280
              N  
Sbjct: 240 QGFNSR 245


>gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
 gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
          Length = 248

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 5/237 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             + ++YG H V +A+NNP R+I  +L T+      D +  L    P + V    I K++
Sbjct: 15  QNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTRPYEIVNNYIISKLL 71

Query: 106 GKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +      A            +D       +++LD + D  NIGAI+RSA AF  + II
Sbjct: 72  KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIGAIIRSAAAFYINAII 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  + +    +
Sbjct: 132 LPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYANEYFTDK 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  +     F
Sbjct: 192 FISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKSF 248


>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 263

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 89/238 (37%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  V  +   
Sbjct: 21  RRRAARFLAEGSNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLAAL-DCPVHLVTERAAK 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P          + +L+ V   +++P N G ++R A A    G+
Sbjct: 78  ALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLADAMGAAGV 137

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +         +    ++++G++  +P     +L +A+  +   G Q +  + D +  L++
Sbjct: 138 LLAGHSVDPYNGKCLRASAGSIFSVPVAAAPDLREAVAAVREAGLQLLATTVDGEVRLDR 197

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    A + G E  GL       A     + M G  ++LNV++AAA+ LY +  
Sbjct: 198 AGELLAKPTAWLFGPESHGLPSAVAAAADHRVCIPMAGGAESLNVASAAAICLYQSAR 255


>gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 253

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT + L          
Sbjct: 8   RIKYIRSLELK-KIRKEEKVFLAEGPKLVGDVL--GYFPCKLLIATSDWLEEHPAVQAA- 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +        Q +                 + L + LD + DP N+G
Sbjct: 64  ---EVIEVTSEELSR-TSLLKTPQQVLALFEQPEYEIDMEAIRNSLCLALDDIQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +    ++  G +  +     +        MHS G  
Sbjct: 120 TIIRLADWFGIEHIFCSPNTVDVFNPKTIQATMGGIARVKVYYTALP----DLMHSLGNV 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + + ++  +    +I+G EG G+ P+ ++      ++          ++LN
Sbjct: 176 PVYGTLLDGENMYEQPLSKNGIIIMGNEGNGISPEIEKLVNRKLYIPNYPAERETSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 236 VAIATAIVCAEFRRQ 250


>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 271

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 11/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83
           +++  K M+S   + +H ++     + GV        +     F L   +          
Sbjct: 7   SNKKIKLMESLRLR-KHRAKEGLFRIEGVRLSEMVAASGWAIRFGLYTAELVEKERGRAL 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMV 137
              L    P+  +      K+   +                  +      A     LL+V
Sbjct: 66  VEALQAKCPLYEIGAALAKKVAATDTPQGIFLVAEQQKKSLPQMAEHLQQAAARKPLLVV 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DP N G I+R+A A   DG+I TK      S    ++  G+L H+P +   +  +
Sbjct: 126 LDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVTDVSAEE 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMAHLHM 256
                 + G Q +  + D +      +   K +LI  G EG G+  +    A    ++ M
Sbjct: 186 VATFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEGGGVSEELLAAA-EKVYIPM 244

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G  ++LNV  ++AV LY      
Sbjct: 245 YGEAESLNVGVSSAVVLYEAVRQR 268


>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
 gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
          Length = 244

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 36/278 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+   +EK+ +                       Q+ ++  Q     + G H +  A
Sbjct: 1   ME-INSPMNEKVKNWAKL-------------------QQKKYRDQTGKFLVEGEHLIGEA 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L   +  + QLL         + +                + K+    +   G  L    
Sbjct: 41  LKAGA--VEQLLIEAGRTNPFEREKEA------IVCGESVMRKLSANVS---GAWLIAVC 89

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T          +VLD V DP N+G I+R+AVAF  D ++ +   +   +    +S 
Sbjct: 90  TQKTTA---PAGLRTVVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRST 146

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GAL HI   R   +    +                 +PL +   ++ IA++LG EG+G+
Sbjct: 147 QGALFHIAISRTELIPALNELKELGVTVIGTA-LQGAQPLSELPVSENIAVVLGNEGQGI 205

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           RP T +     A + M    ++LNV+ AA + LY  + 
Sbjct: 206 RPATLDICDQRALIEMS-SFESLNVAVAAGICLYRYRR 242


>gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
 gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
          Length = 318

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +  + G + V  AL +         Q     +   R             +   P   +D+
Sbjct: 74  SEMVVGRNPVYEALRDGVPATTLYVQQYIDNDERVRDALKLAGERGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      +             L++ LD V DP N+GAI+RS  A
Sbjct: 134 MTNGL-NHQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHF 280
                
Sbjct: 313 VARRR 317


>gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
 gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
          Length = 246

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIERLAKTQNIKIIRISTNELDKIL-KSKDHRGF 64

Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +                   +    +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   +
Sbjct: 125 VVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
          Length = 292

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 101/304 (33%), Gaps = 35/304 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+      I S+ D   A        Y  +     ++R   +           +  A
Sbjct: 1   MQFIT------IDSIDDERVA-------AYTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47

Query: 61  LNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L      I  L         +      D       PV    P+ + ++ G       L+ 
Sbjct: 48  LAAGREPISLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALSA 107

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L    +  R+++ + V++++ D  N+GA++RSA A   D ++ T           
Sbjct: 108 MRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRA 167

Query: 177 AKSASGALEHIPYIRISNLTDAL------------------QKMHSWGFQTIGLSSDSKK 218
           A+ + G +  IP+ RI                           +         L+     
Sbjct: 168 ARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLNN 227

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E      K+ALI G EG GL   T   A     + M   + +LNV+ ++AVA Y T  
Sbjct: 228 SPESADHIGKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYATSP 287

Query: 279 HFAK 282
             A+
Sbjct: 288 KRAE 291


>gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a]
 gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40]
          Length = 246

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEQLAKTQNIKIIRINANELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 284

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 106/288 (36%), Gaps = 25/288 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I       I S  D            Y ++     ++R   +           ++ A
Sbjct: 1   MNIIE------INSWDDPRLD-------AYARLTEAQLRNRLEPERGLFIAESPKVIARA 47

Query: 61  LNNPSRKIFQLLATKN-ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L    + +  L+  ++ A AR   +          PV T   + + ++ G E     L  
Sbjct: 48  LAAGMQPLSFLMERQHLAAARTLIEGCTAEDGSDIPVFTGSTEILSRLTGFELTRGVLCA 107

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              P L    D + N++ + VL+ + D  N+GA  RSA A   D ++ T           
Sbjct: 108 MRRPALPSVEDLLANARRVAVLEGIVDHTNVGAAFRSAAALGIDAVLVTPTCCDPLYRRS 167

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--------EIKNDK 228
            + + G +  +P+ RI    D             G S+ +    +             ++
Sbjct: 168 VRVSMGTVFQVPWTRIGQTPDDWPDRGLERLHACGFSTAAMALSDNSVSLSDAALNACER 227

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +A+I+G EG GL  +T         + M   + +LNV+ A+AVA Y  
Sbjct: 228 LAIIMGTEGDGLAKRTIAQCDFTVRIPMRHGVDSLNVAAASAVAFYQL 275


>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
 gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 259

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 5/232 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
               G + V AA+ +    +  +  T+ A  R           PV  V  +    +    
Sbjct: 27  FLAEGPNLVEAAIVSG--LVRDVFVTEVAAQRHATVLATLK-CPVHPVSERAAKALSDTV 83

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                +A+   P          + QL++    +++P N G ++R A A     +I     
Sbjct: 84  TPTGLIAVCEMPTTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYT 143

Query: 169 SPSESAVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               +    +S++G++    +     +       +          +  ++     + +  
Sbjct: 144 VDPYNGKCLRSSAGSIFSITVVVASDAYAAVTELRAAGLQVLATMVDGETSLDEAKPLLG 203

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              A + G+E  GL  +  E A     + M G +++LNV+  AA+ LY +  
Sbjct: 204 KPTAWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSR 255


>gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 269

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 4/252 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +   + +     +           +  AL    +        +  LA LD      
Sbjct: 16  DYTTLTDVHLRKLREPREGMYIAESSRVLRRALAAGHQP-RSFFLAEKWLADLDDVFQAY 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       +++I G       +A    P   P  + +  ++ + VL+ + D  N+G
Sbjct: 75  PDVPVFIGKAALLEEITGFHLHRGAMAAMERPDPVPLPELLAGARRVAVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ + R          + + G +  +P+ R+ +    LQ +   GF 
Sbjct: 135 AIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPQDLQVLKDHGFT 194

Query: 209 TIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L           +     D++AL+LG EG G+ P+T         + M   + +LNV
Sbjct: 195 VAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAVKIPMRNGVDSLNV 254

Query: 266 SNAAAVALYITQ 277
           + A+AVA +  +
Sbjct: 255 AAASAVAFWELR 266


>gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 250

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L  + S +I ++                        V+TVP   +
Sbjct: 3   SNKDFVFGRHAGLDYLKTHNSDQINKVFLQHGVQEDFANQVYAITKKKRLVVQTVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V +   HQGL L  +      LD              L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLV-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E    N K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGVDYREWN-ANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAFNSR 246


>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 265

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  V  +   
Sbjct: 23  RRRAGRFLAEGANLVEAA--AARGLVRDVFVTEAAERRYAALLG-AQRCPVHLVSERAAK 79

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P          + +L+ V   + +P N G ++R A A    G+
Sbjct: 80  ALSDTVTPAGLVAVCDMPATQLADVLAGSPRLIAVAVEIGEPGNAGTVIRLAAAMGAHGV 139

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSKKPL 220
           I         +    ++++G++  IP +   ++       +          +  + +   
Sbjct: 140 ILGGHSVDPYNGKCLRASTGSIFSIPVVTEPDVPAALDALRGAGLQVLATTVDGEKRLDE 199

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++     A + G E +GL       A     + M G  ++LNV++AAA+ LY +  
Sbjct: 200 SADLLGRPTAWLFGPESRGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQ 257


>gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 269

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 4/252 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +   + +     +           +  AL    +        +  L  LD      
Sbjct: 16  DYTTLTDVHLRKLREPREGMYIAESSKVLRRALAAGHQP-RSFFLAEKWLEDLDDVFKAH 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       +++I G       +A    P   P    + N+Q + VL+ + D  N+G
Sbjct: 75  PDVPVYIGKASLLEEITGFHLHRGAMAAMHRPAPVPLATLLANAQRIAVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ + R          + + G +  +P+ R+ +  D L ++   GF 
Sbjct: 135 AIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPDHLAQLKEQGFT 194

Query: 209 ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   +          K  K+AL+LG EG G+  +T         + M   + +LNV
Sbjct: 195 VAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVKIPMRAGVDSLNV 254

Query: 266 SNAAAVALYITQ 277
           + A+AVA +  +
Sbjct: 255 AAASAVAFWELR 266


>gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           JD1]
          Length = 246

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K+   +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 236

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 7/235 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V  A+ +        L                     +      +D++ G   
Sbjct: 2   VIYGRNAVEEAVRSGRNIEKVYLLHGKFFEPEFLSLLQERGVRFQWAKRPQLDRLAG-TG 60

Query: 110 VHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            HQG+    +P+   TL     + V  +     L+ + +P N+GAI RS   F   G++ 
Sbjct: 61  KHQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIARSVELFGGVGLLL 120

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R S   + V  K+++GAL H+  +R+  L + L      G   +       + +    
Sbjct: 121 PQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGN-VYALETGGRDIRDSQ 179

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +A ILG+EGKG+  +  E A     +   G + +LNVS AA +A +     
Sbjct: 180 LKRPLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRR 234


>gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 267

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 85/247 (34%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     +++  S            +  AL         L   ++               P
Sbjct: 20  LTEAQLRNKQHSDKGLFIAESPKVIEVALKKGFIPTALLCEERHIKGDAANIIAQNPSIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           + T     +  I G       L     P L       + +  + ++D V D  NIGAI R
Sbjct: 80  IYTGTRDMLASITGYTLSRGVLCAMKRPTLPSVESICKTASRIAIVDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   DGI+ TK      +      + G++  IP+  + N    + +           
Sbjct: 140 SAAALGIDGILLTKSSCDPFNRRAVGVSMGSIFLIPWTWLDNNISEVSQYGFKTVAMALR 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       +     K+A+ILG EG GL   T      +  + M   + +LNV+ A+A+A
Sbjct: 200 HNSIDINDARLKAEKKLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAASAIA 259

Query: 273 LYITQNH 279
            +    +
Sbjct: 260 FWELCKN 266


>gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++  YK+++     S+   +     L GVH   A L         ++     L     
Sbjct: 8   SRDNPLYKELKHLAASSQARRKAGRTLLDGVHLCEAYLQKVGLPPLCIVGETAMLNGEVT 67

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                         V P  +   + +      L         PT   +  S +L+  D V
Sbjct: 68  VIVQQCSDSTTQCIVLPDALFHALSQVEHGVDLLFVIDTPEMPTPPRLTQSAVLL--DKV 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G+I+RSA A     +  +   + + S  + ++  GA   +      +L+D L  
Sbjct: 126 QDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEIFEGVDLSDLLG- 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                   I  SS ++K L +      +A + G EG+G+       AT    +   G I+
Sbjct: 185 --RADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARATHRISIPHLGDIE 242

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ ++AV  +       
Sbjct: 243 SLNVAASSAVCFFEQLRQRT 262


>gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           helveticus H10]
          Length = 250

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        ++ VP   +
Sbjct: 3   SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAYNSR 246


>gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
 gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 92/275 (33%), Gaps = 27/275 (9%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++   +  +++   +     + G  +V  A+   S  +  +    +       
Sbjct: 9   DNPKSDRVRRIAELTRTKGRRKNGRFLIEGPQSVREAVRYASDIVTDIYVAGDEDGIDSD 68

Query: 84  DAN--------LPHPFPVKTVPPQTIDKIVG--KEAVHQGLALETAPLLSPTLDA---VR 130
                            V T   + ID I    +  +  G   +    +   ++      
Sbjct: 69  VLADIAQRALDKSADLYVHTATREVIDHISPDAQGVIAVGDTDKLRSGMKAEVEQASSYS 128

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH---- 186
               +     V DP N G ++R+A A  CD ++         +  + +S +G+L H    
Sbjct: 129 RGMRVAAFWQVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVI 188

Query: 187 --------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
                              A     +   +   L         +E + D  A++ G E +
Sbjct: 189 AMGTNDFFDWMKEQGLDIWAADVYGTRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEAR 248

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           GL  KT E    +  + M G  ++LN++ +AA+ L
Sbjct: 249 GLNGKTLEQCQRIVSIPMYGKAESLNLATSAAIIL 283


>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
 gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 80/255 (31%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++  + +     G   V   L         LL T   L          
Sbjct: 6   KIKYIRSLELK-KYRKEEQVFIAEGHKLVGDLL--GHFPCRLLLGTDKWLNEHPLIEAEE 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + +    +   + LAL   P             L + LD V DP N+G
Sbjct: 63  T----IEVSREELSRASLLKTPQEVLALFEIPHYEWDPKI-AERSLCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I  +     + +    ++  GAL  +             +       
Sbjct: 118 TIIRIADWFGIHHIFCSNGCVDAFNPKTVQATMGALARVQLHYCDLPAFLQAQPKEVPVF 177

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
              L  ++    E    +    +I+G EG G+ P+  ++      +          ++LN
Sbjct: 178 GTFLDGENLYAQE---LSTNGIIIMGNEGNGISPQVAQSVNRRLLIPNYPQGQTTSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 235 VAVATAIVCAEFRRR 249


>gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 496

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 7/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
                 +++     +            G      AL+     +  L  T   L       
Sbjct: 226 RDPMVARLRDL-GNAAGRRARGQFLAEGPLLAFRALD--DLPVEDLFYTGELLRDPAGTV 282

Query: 86  NLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            L        P   +    +  I     +   +      L +          +++  + +
Sbjct: 283 LLRRAADLGVPAHRISEGLMGLITPTRPIPSVITAIWGQLRNVADYRPGRRAVILATEQI 342

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           N+P N+G  LR+A A   + +I     +        ++A GA+  IP    ++L   + +
Sbjct: 343 NNPENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIPIYTCADLPTWVGQ 402

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             + G   +G + + ++ L        + +I+G E +GL   T    +S+  + M     
Sbjct: 403 ARARGIHVVGATGNVERTLYDADLPLPLMIIVGNETEGLTDATLAVCSSLVRIPMAPGQD 462

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV  AA V LY      
Sbjct: 463 SLNVGVAAGVILYDIVRRR 481


>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
 gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
          Length = 324

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 117/280 (41%), Gaps = 20/280 (7%)

Query: 20  YAKLRRNHRDYKKMQS----------FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
            A+ R NH+ YK  Q                    +  +  + G ++V  AL        
Sbjct: 40  RAEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSEIIAGRNSVLEALRVGVPAAT 99

Query: 70  QLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
             +      +   R            +   P   +D++    AVHQGLAL+  P      
Sbjct: 100 LYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLTD-GAVHQGLALQVPPYEYAHP 158

Query: 127 DAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             +       + L++ LD + DP N+GAI+RS  AF   G++  +R S   +A   K+++
Sbjct: 159 SDLIDPELPGTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSA 218

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGL 240
           GA   IP  + SNLT AL++    GF  IGL  D    L      +  + +++G+EGKGL
Sbjct: 219 GAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPLVVVVGSEGKGL 278

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ET   +  + M   +++LN   A +V LY    + 
Sbjct: 279 SRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVAVNR 318


>gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 237

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 87/241 (36%), Gaps = 9/241 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            ++       G   V  AL      + +L AT  A    +  A+L   FP   V    + 
Sbjct: 2   RTERRLFLADGPKAVEGALAAD--VVVELFATPAAA---EQYADLLGGFPAALVDDGAMA 56

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +        GL      L    +   R S+LL +   V DP N G ++R A A   DG+
Sbjct: 57  GLSD-SVTPAGLVAVCRFLDDEPVVDARVSRLLAICADVRDPGNAGTVIRCADAVGGDGV 115

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +         +    +++ G+L H+   +  +   A+    S GF  +         L  
Sbjct: 116 VLAGNSVDPYNPKTVRASVGSLFHVRIGQERHPATAVSHARSAGFTVLAADGAGDVDLFD 175

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
                    A + G E  GL  +    A     + + G  ++LN+S AAA+ LY +    
Sbjct: 176 ADELLAGPSAWLFGNEAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLYASARVQ 235

Query: 280 F 280
            
Sbjct: 236 R 236


>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R     DA       V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLTELFATVEAADRYADIVDAARAAGARVHLADG 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL HV DP N G +LR A A  
Sbjct: 88  DVLADVSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAG 147

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++ T       +    +++ G+L H+P      + +A++ +   G + +      + 
Sbjct: 148 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEEAVRGLRDAGVRILAADGAGED 207

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 208 DLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267

Query: 275 ITQN-HF 280
            +     
Sbjct: 268 ASARAQR 274


>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
 gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
          Length = 244

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H +  A+    + +  +L  +                P   V    +
Sbjct: 23  YRDSDRCFLVEGEHLLEEAIRA--KLLDCILVEEGHTYDTGAY-------PCYEVSSMIM 73

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+    +              P        + +++LD V DP N+G ILRSA +F  D 
Sbjct: 74  RKLSDSVS----GTWLIGVCHMPCPMDFVMGEKVILLDDVQDPGNVGTILRSAYSFGFDT 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +K  +   S  + +S  GAL H   +  ++L+  + ++       IG + ++   + 
Sbjct: 130 VVLSKHCADVYSDKVIRSTQGALFH-MQVIRTDLSQIIDQLKEKKIPVIGTALENASAMS 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                D++AL+ G EG G+  +         ++ M    ++LNV+ AA +A+Y  + 
Sbjct: 189 TIEAVDRVALLFGNEGNGVSKELLAKCDETMYIEMH-AFESLNVAVAAGIAMYKFRR 244


>gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
 gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
          Length = 246

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K+   +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQNINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
 gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
 gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 352

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 27/278 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSR----KIFQLLATKNALAR 80
           +   K      Q S +     ++ + G   +          +    +I  LL  + A   
Sbjct: 74  NPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMTTEIECLLLHEEAKIP 133

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVR 130
              ++       V ++  + +  +   E+V     +      +   D             
Sbjct: 134 QGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFP 193

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------- 183
           ++  ++VLD + DP N+G ++RSA+AF+ DG           +    +++ GA       
Sbjct: 194 SAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIV 253

Query: 184 ---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                H+  +        L    +   Q +   S       Q +    + LILG+EG GL
Sbjct: 254 SGNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGL 313

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + ++    +  + M G  ++LNVS A  + LY+ QN
Sbjct: 314 SEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQN 350


>gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
 gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
          Length = 256

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 8/237 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
            LYG + V  AL   SR++  + AT +A     W A + H      V  V      +   
Sbjct: 21  ILYGRNAVHEALR-GSREVQHIWATAHA-VEEPWLAAVAHDASAVDVNVVADGGWIERRS 78

Query: 107 KEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               HQG+  + AP     +D        L++ LD + DP N+GAI R+A      G++ 
Sbjct: 79  GSPDHQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIARTAECAGATGLVI 138

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R S   +  + K+++GA+EH+P  R  NL D L      G    G   D   P     
Sbjct: 139 PARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGAEGDGGVPYTGVD 198

Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + L+LG+EG+GLRP+   +  ++  L + G I +LNVS AA+  LY      
Sbjct: 199 YSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASALLYEIVRQR 255


>gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
 gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
          Length = 265

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 137/247 (55%), Gaps = 11/247 (4%)

Query: 31  KKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           KK +   +K R       E ++L+G+H V  AL NP+R+  +L+ TKNA  +L  DA   
Sbjct: 4   KKPKWVVEKERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAA 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVND 143
                +   P+     +  ++VHQG ALE  PL   +     L        +++LD V D
Sbjct: 63  GGIEPEMADPRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVRPPRVVLLDRVTD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAILRSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL D + ++ 
Sbjct: 123 PHNVGAILRSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQ 182

Query: 204 SWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           S G+  +GL  ++   LE  +   ++  +AL+LGAEG GLRPKT++T   +  +   G  
Sbjct: 183 SMGYLVLGLDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSF 242

Query: 261 KALNVSN 267
            +LNVSN
Sbjct: 243 GSLNVSN 249


>gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
 gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
          Length = 246

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 110/240 (45%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKIKEIERLAKTQNIKIIRISINELDKIL-KSKDHRGF 64

Query: 115 ALETAPLLSPTLDAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +                   +    +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   +
Sbjct: 125 VVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
 gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
          Length = 246

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K+   +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYAGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
 gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
          Length = 229

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 12/236 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + ++        + G H    A    ++ +  +  T+ A+ RL        P     V  
Sbjct: 3   QKKYRKSS--YLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTD 53

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + ++   +   QG+  E A   +   D  +   L++  + V DP N+G ++R+A A +
Sbjct: 54  DVLKELTDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAAN 110

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +  +++ +   +    +S  G+  H+P  R+                     S+   
Sbjct: 111 FDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSV 170

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 171 NYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226


>gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 256

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 115/245 (46%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDK 103
             +  +YG + V + L      +  L++ +  + +     +       P + V  + +D+
Sbjct: 8   AGDDLVYGRNPVMSLLEGGGDCLKVLISRRRSDPVRERIVEICRARGIPFQEVDGKVLDR 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA---------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           +VG  + HQG+    +P+    L+             +  L+V+DHV DPHN+GA++R+A
Sbjct: 68  MVG-TSSHQGVVARVSPVGILKLEDLYRLAGASDPVAAFALLVVDHVEDPHNLGAMIRTA 126

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLS 213
            A     ++   R     + V+ K+++GA   +P I + N++ A++++        +GL 
Sbjct: 127 EAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIRRVKEDLGLWAVGLE 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  +  +  E    +IAL++G+EGKGL          +  + M G   +LNVS AA + +
Sbjct: 187 AQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGASGSLNVSVAAGIVM 246

Query: 274 YITQN 278
           Y    
Sbjct: 247 YQWYQ 251


>gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2083]
 gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 259

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 93/252 (36%), Positives = 142/252 (56%), Gaps = 9/252 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +  +  E ++L+G+H V  AL NP R   +L+ T+NA+ +L          
Sbjct: 5   KWVVKKEQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSE-L 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146
             +   P+  +  +  ++VHQG ALE  PL    L+ V           ++LD V DPHN
Sbjct: 64  EPEMCEPRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA  F    +I T R S  E+  LAK+ASGALE  PY+RI NL ++++ +   G
Sbjct: 124 VGAILRSAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMG 183

Query: 207 FQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +  IGL  ++++ ++      ++  IAL++GAEG GLR KT++T  ++  +   G   +L
Sbjct: 184 YLVIGLDGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSL 243

Query: 264 NVSNAAAVALYI 275
           NVSNAAAVALY 
Sbjct: 244 NVSNAAAVALYA 255


>gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 269

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 8/267 (2%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            L+ +   ++     DY ++   + +                 +  AL    +       
Sbjct: 5   HLQSADDPRVS----DYTRLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFL 59

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            +  L  LD         PV       ++ I G       +A    P   P    + N++
Sbjct: 60  AEKWLEDLDDVFEQFPDVPVYIGSAALLEDITGFHLHRGAMAAMQRPSPVPLPGLLANAR 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+ 
Sbjct: 120 RVAVLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLE 179

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATS 250
           +    L  +   GF    +          E+     DK+AL+LG EG G+ P+T      
Sbjct: 180 SWPGDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDL 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
              + M   + +LNV+ A+AVA +  +
Sbjct: 240 AVRIPMRAGVDSLNVAAASAVAFWELR 266


>gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC
           5463]
          Length = 250

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        ++ VP   +
Sbjct: 3   SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQNHF 280
              N  
Sbjct: 241 QAYNSR 246


>gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
 gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
          Length = 246

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKITRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 321

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 120/309 (38%), Gaps = 39/309 (12%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFN------------QKSRHTSQPENL 49
           N I K    +    +  H++K  +  +   ++Q               +K    +Q +  
Sbjct: 6   NEIHKSTKSQRKPSQAVHFSKTGK--KLSSELQKLRFEDLSESESSSIRKDSQPNQDKEF 63

Query: 50  -FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPVKTVPPQTIDK 103
             ++GV     AL    R    L          D         +     +K V  QT++K
Sbjct: 64  EIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEAIRRGVQIKRVNKQTLEK 123

Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +     VHQGL L+ +            +L+      L +VLD V DP N+GAILRSA  
Sbjct: 124 MCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYY 182

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------T 209
              D I+++   S   +  ++K+++G +E +     SNL   ++     G+Q        
Sbjct: 183 LGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLE 242

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNV 265
            G S  +         +    L++G EG GL  + ++    +  +     M   +++LNV
Sbjct: 243 EGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNV 302

Query: 266 SNAAAVALY 274
           S A  + L+
Sbjct: 303 SVATGILLH 311


>gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 256

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 17  QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLIGTRSYEIVNN 73

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++         A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 74  DILSKLLENHTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 133

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 134 FDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 193

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +  
Sbjct: 194 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFHSL 253

Query: 277 QN 278
            N
Sbjct: 254 HN 255


>gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 240

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236


>gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
 gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
          Length = 268

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R         +     ++ AL++    +  L   K+ +           
Sbjct: 17  FSTLTETQLRNRTEPGKGIFIVESPKVITRALDSGYEPLAILCEYKHIVGDAAEIIERCE 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      +  R ++ ++V+D V D  NIGA
Sbjct: 77  NVPVYTGSRELLATLTGYVLTRGVLCAMRRPEPRSMEEVCREARRIVVIDSVVDATNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +  + + + GA+  +P+  ++     L K+       
Sbjct: 137 IFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAWMNGSLSDLGKLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                         +   K+A+++G EG+GL   T   A  +  + M   + +LNV
Sbjct: 197 ALTDDSIPIDNPALVNESKLAIVMGNEGEGLSHDTITEADYVVRIPMVHGVDSLNV 252


>gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 264

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 12/252 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD 82
            R++   K ++   Q S    +   ++L G H   AAL    +    + A         +
Sbjct: 10  SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPAWEHE 69

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           W            V    +   V        +        +P L A   +   +VLD + 
Sbjct: 70  WGPAAARNV----VLADALWSDVSGLESPARMGFVVPAPEAPVLQAGLPT---VVLDRLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +   K  +   S  + ++  GA              ++  +
Sbjct: 123 DAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHF----ALHLVEGLSVDDI 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     +  SS     L +         ILG EG+G+    Q+ AT +  +  PG  ++
Sbjct: 179 DTLRLPLLATSSHGGDLLHRACLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEES 238

Query: 263 LNVSNAAAVALY 274
           LNV  AAA+ L+
Sbjct: 239 LNVGAAAAICLH 250


>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 255

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+   ++ I                      +   K ++  Q     + G H V  A
Sbjct: 1   MQKITSTTNQTIK-------------------NLAKLNKKKYREQEGFYLIEGFHLVDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             +     + LLAT+ A  +L    +L      +  +  +    +           +   
Sbjct: 42  FKSKLNFKY-LLATQAAFEKLSIQYHLDLTDKRLIQINERVAKHLSATTNSQDVFMVLKI 100

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                         LL   D + DP NIG I+R+A A   +G++ ++  +   +    ++
Sbjct: 101 NQPKHFTFNFGKWILL---DSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+  HIP I+   L    Q   ++      +  D  K L    K  ++ALI+G E  G
Sbjct: 158 MQGSQFHIPIIKADLLKTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +       A     + + G  ++LN + AA + +Y   
Sbjct: 218 VSGDAVNLADEKLFIPIKGQAESLNAAIAAGIMIYHFA 255


>gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 244

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 91/240 (37%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         +        +   L+++LD ++  +N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A +       +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
 gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
          Length = 258

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/239 (34%), Positives = 137/239 (57%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNA  +L+           + V
Sbjct: 10  KEQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEAAIA-ASGITPEEV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAIL 151
            P+  +  +   +VHQG ALE  PL         L   R +  +++LD V DPHN+GAIL
Sbjct: 69  DPRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +G
Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLG 188

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+ +++  +E      ++  +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 189 LAGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 267

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 13/259 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86
             ++     QK ++  +       G+ TVS  +++      +  LL  K  L+ +     
Sbjct: 13  LIRRFAKLLQK-KYRDREGLFLAEGLRTVSELMHHIPDAGYLIALLVEKEQLSHIPQSRR 71

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVND 143
                 +  +      ++ G       + + +         +       +L++ LD V D
Sbjct: 72  YKE--KIYLIDSDEARRLSGTSTAQGIVGIFSQQKRSAGEISSQEQHAGELVLALDDVQD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A  F    ++     +   +    ++ +G++  + +  + +L   L+KM 
Sbjct: 130 PGNVGTILRTASWFGVSTVVCGPGTADRYNPKAIRAGAGSVFCLNHYSVGDLEKELEKMR 189

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----I 259
             G+  I  S        Q    ++  L++G E KG+       A     +   G     
Sbjct: 190 RAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSMSILRKADLQITIP-RGRKDAG 248

Query: 260 IKALNVSNAAAVALYITQN 278
           +++LN + +A + L     
Sbjct: 249 VESLNAAVSAGILLSEFVR 267


>gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1]
          Length = 266

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 11/245 (4%)

Query: 46  PENLF-LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101
            +    +YG   V  AL++P  ++ +++     + A  R    A      PV+    Q +
Sbjct: 22  KDRFITVYGRKPVLEALSDPDLEVDKIVLADSVRGAGEREITAAARGRGVPVQRASAQRV 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + G     QG+  +        L         R    ++VLD V +P N+G ILRSA 
Sbjct: 82  KVLAGNGRHDQGVLADVVAPRMAPLPVFLSDLGSRRPASVLVLDAVTNPSNVGMILRSAT 141

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG++  +R  P+   ++ K AS  +     +           +      ++     
Sbjct: 142 AAGLDGVLLPRRGVPAIDPLVIK-ASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLDT 200

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L       ++AL+LG E  GL    +E    +  L M G +++LNV++A AVA Y 
Sbjct: 201 GSGSLLDAELPHRVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAAYE 260

Query: 276 TQNHF 280
                
Sbjct: 261 LLRRR 265


>gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
 gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
          Length = 269

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     ++ AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVITRALDAGYEPLAILCEHKHITGDASDIIERCSNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      D  + ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGERELLATLTGYVLTRGVLCAMRRPEPRGMEDVCQKARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +      L ++          
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLGDLGRLGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +             ++A+++G EG GL  +T   A  +  + M   + +LNV
Sbjct: 200 DNSISIDNPVLATEPRLAIVMGTEGDGLSQETIAAADYVVRIPMSHGVDSLNV 252


>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 242

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 15/248 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S +QK +         + G   V   +      +  ++ ++    ++    +    
Sbjct: 10  KWVRSLHQK-KMRDLESIFIVEGEKLVLEGIQMGLSNLEMIITSEAFFDQIPASLH---- 64

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F   TV  + +++ V +                  L+        +VLD V DP N+G +
Sbjct: 65  FKTFTVSTKELEQ-VSELKTPNKCLAIFKREKYTLLEKS----FTLVLDGVQDPGNMGTM 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A  F    +I +K      ++ + +S+ GA+  IP   +   +             +
Sbjct: 120 LRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPVHYLDLASYLKDNQQQKFGAML 179

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++  K             LI+G EGKG+RP+ +        +   G  ++LNV+ A A
Sbjct: 180 HGTNYKK-----VSYPKDSILIMGNEGKGVRPEIEALFDVPVTIPRYGEAESLNVATATA 234

Query: 271 VALYITQN 278
           + L     
Sbjct: 235 ILLAEIVQ 242


>gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 285

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 100/272 (36%), Gaps = 12/272 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K+   + +++ + +        SQ + +F+ G   +   L    +    L      L+  
Sbjct: 14  KVSVRNAEFQIISALRTNRTKRSQEKEVFVEGTEPIKQLLAARWKVTRILYRENVPLSSW 73

Query: 82  DWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQ-------GLALETAPLLSPTLDAVRNSQ 133
             +  +L        V  +   ++  KE   +         +  T         + +N  
Sbjct: 74  AKEVLSLHKEAKQFEVKEELYLELSEKETPSELLITAKIKESELTIQSKKTEQQSNQNKP 133

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++ D  +D  N G++LRSA AF  D +             + +S+ G L H   + ++
Sbjct: 134 FYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPKVIRSSLGTLFHTKLVFVN 193

Query: 194 NLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                ++ +     +     +G  S     L +      I LILG E KG+  + Q    
Sbjct: 194 EFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEKKGMSVQLQSICD 253

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + M G++ +LNVS A ++ L+    +  
Sbjct: 254 RIVKIPMLGVVNSLNVSCAGSILLWEVTRNRN 285


>gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 240

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+                  + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +    F  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DK  L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 244

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 92/240 (38%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         +        +   L+++LD ++D +N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A +       +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 228

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 7/229 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
             G+         P  +  ++  + + L     +       P + V P+   +I   E  
Sbjct: 2   AEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL---KGIPFEEVSPKVFREISDTETP 55

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
              L+L      + +    R+   +++L+++ DP N+G ++R+       GII ++    
Sbjct: 56  QGILSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVD 115

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + +S  G++  +P+    +L + ++ +            +       E  +   A
Sbjct: 116 IYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVHVYAAHLNGTDYT-DESYDKISA 174

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++G EG GL  +    A     + M G +++LN + A  + +Y  +  
Sbjct: 175 FLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223


>gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
 gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
          Length = 246

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            ++ +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKAQNIKIRRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFEHLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTINFLKKNGFWIYAGDVKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EG+G+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDRKIALILGNEGRGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           thermophila DSM 6578]
          Length = 241

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 11/240 (4%)

Query: 47  ENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            ++++ G   V   L +P    ++  L  T     R             +    Q + + 
Sbjct: 2   RSVYITGKRAVETYLVDPGVKERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRY 61

Query: 105 VGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           VG    H+G ALE         L       + + LL+ LDH+ DPHN+GAILRSA  F  
Sbjct: 62  VG---THRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVGAILRSADQFGA 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  +R +  ++A ++KS+SGA      + +                 +  +    +P
Sbjct: 119 LGVIIPERRAVKDAASISKSSSGADA-FVPVVVETNLRRALLHVKKAGFWVYGADMEGQP 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +   + ++ L+LGAEGKGL    +E    +  +   G + + NVS AA + +Y  +  
Sbjct: 178 VHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVAAGILMYEVRRQ 237


>gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
 gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
          Length = 246

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKIIRINTNELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
 gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
          Length = 246

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKIQNIKIIRINANELDKIL-KNKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
 gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
          Length = 247

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 9/243 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    ++ +   +     + G   V+  L +    I Q+ AT   + + +   +     
Sbjct: 8   KLIKSLEQKKQRKKQGLFIVQGEKNVAELLRSD-FVIEQVFATSTYINKNNTLLSTHQLV 66

Query: 92  P-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           P    V    + K+    + +  L    A   + TL  + + +L++VLD V DP N+G I
Sbjct: 67  PLCTEVSSDELKKMGTLLSNNSVLV--VAKCKTATLPTIASQELILVLDQVGDPGNLGTI 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +  +  ++ G+   I       +     +        +
Sbjct: 125 IRVADWYGVKNIVCSPDCADFYNPKVIAASMGSFARINVSHTPLVEYLAIQEKPIFGAYL 184

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S+  +             +++G+E  G+  + +   +    +   G  ++LNV+ A  
Sbjct: 185 EGSNLHQCA-----LPKSAFIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATG 239

Query: 271 VAL 273
           + L
Sbjct: 240 IIL 242


>gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 251

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 46  PENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
             + F+YG ++    L     N   K+F     +   A   +         V+  P   +
Sbjct: 4   NNDEFVYGRYSGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V  E  HQGL L  AP     LD              +++LD + DPHN+G+ILR+ 
Sbjct: 64  DQMVNHE-NHQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPHNLGSILRTC 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + 
Sbjct: 123 DATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKRGYWIFGTAM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   +    N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 183 KGEDYRKWN-ANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 248

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            ++  ++G++ V  AL       K++      N                +  VP + + K
Sbjct: 3   KKDYTVFGIYPVKEALAAEIVFDKVYVQKDINNPKIEQIVADLEKLNVSISNVPEEKLYK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+   T+P+    L+           + L ++LD ++D  N GAILR+A  
Sbjct: 63  LT--KGNHQGIVALTSPIEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K+     S    K+++GA+ +IP I++ ++ DA+  +   G  TI  +  S
Sbjct: 121 TGVHAVIVQKKGGAPVSGDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEKS 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K +  +     +A+++G+EG+G+     +     A L + G I +LNVS A    LY  
Sbjct: 181 EKTIYDQTLTTPVAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYEI 240

Query: 277 QNHFA 281
                
Sbjct: 241 VRQRI 245


>gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
          Length = 288

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 22/267 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     +++               +  AL      I  L         A      D 
Sbjct: 17  YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALAANREPISLLVEEPWIEGMAETFTLIDN 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  RWGTDIPVYVASPEQLKQLTGYRLHRGALAAMKRWPLPSVEEVCRGARRIAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTGM 196

Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                        +++   DK+ALI G EG GL   T   
Sbjct: 197 QELHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHIDKLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M   + +LNV+ ++AVA Y
Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
 gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
          Length = 255

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 7/246 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R YK + S   K ++  Q +   + G  +V   L +  R + +L  T +           
Sbjct: 9   RQYKLLHSLQVK-KYRKQHQAFLVEGEKSVVETLQSAYR-VSELYCTADFAQNYAPIIET 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V       + K    +  +              +  +  ++  +VLD + DP N+
Sbjct: 67  SA-TKVLVATANELKKGSHFQTNNS-CLAIVQLPEPTPIAPLAQNEYALVLDGIQDPGNL 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  +    I+ +       +  +  S  G+   +                    
Sbjct: 125 GTIVRIADWYGIRSILCSPDTVDVYNPKVIASCMGSFLRVNIHYTDLEAYFPS---LAAP 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +  G   D     E     +   ++LG E KG+R            +   G  ++LNV+ 
Sbjct: 182 KVYGAFLDGANLHEWSFPKEAGYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNVAM 241

Query: 268 AAAVAL 273
           A A+  
Sbjct: 242 ATAIIC 247


>gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
 gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
          Length = 244

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          +  V    +D+++    
Sbjct: 5   LIYGKHVVYELLKKHKNMVKEIWV--KNLKLLNEFDLKNTKIKINVVSENKLDQLLKTNE 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E         D        +   L++VLD ++DP+N GAI+RS    + DGII
Sbjct: 63  PHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A +       +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K  +I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKTVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
          Length = 251

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 31/280 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+   ++KI                  K +       +  +      + G+H V+ A
Sbjct: 1   MEKITSTSNKKI------------------KDLIKLRDDKKFQTVENLFVIEGLHMVNEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      +  +   +   +++       + F    +     +KI   +      A     
Sbjct: 43  IK--RNIVKTIFLEEKMFSKIYDI----NNFECVLISENVSNKISSTKTSQGIFATCI-- 94

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +   + +++LD + DP N+G ++RSA +F    ++ +       +  + +S 
Sbjct: 95  ---LEDQKINMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRST 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGK 238
            G L  I  I    +    +   +       + +D  K ++Q     N K ALI+G E K
Sbjct: 152 QGNLFSINLINDDLIKTIDELKQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAK 211

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+  + +       ++ M   +++LN + A ++ +Y  + 
Sbjct: 212 GISDELKPLIDINLNIEMSNEVESLNAAIAGSIIMYNIKK 251


>gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 268

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 5/253 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   G   VS  L +    +  LL  +   A L  D    
Sbjct: 16  DFRHLSTADRRPDRPGGRGFVIAEGTVVVSRLLASRY-PVRALLGVQRRFAELAGDLAGL 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      +T+ ++VG       LA+   P      + V  +  + VL+ V D  N+G
Sbjct: 75  -DVPQYVASAETMAEVVGFHLNRGILAVADRPAPLTVSEVVGGTGPIAVLEGVGDHENLG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A A    G++     S        + + G +  +P+  +++    L  + + GF 
Sbjct: 134 SLFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFGHLTDWPGGLDDLRARGFA 193

Query: 209 TIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +           +E    ++AL+ GAEG GL       A     + MP  + +LN+
Sbjct: 194 VAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLNI 253

Query: 266 SNAAAVALYITQN 278
           + AAAVA Y    
Sbjct: 254 ATAAAVAFYELAR 266


>gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
 gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 240

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+                  + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 246

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 21/253 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S +QK +  ++ +   + G+  V   LN+    +  L              N  
Sbjct: 6   QIKLIKSLSQK-KFRNKHKLFVVEGLKGVREFLNSDFELV-SLYVVDGEFEEHQQFLN-- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +  + + KI   +   + LA+   P+        +   L +VLD V DP N+G
Sbjct: 62  ------IIDQKELKKISFLKTPQKALAVFKIPVKRDL----KIGDLTVVLDGVRDPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F  + +I +       +         A            +D +  + +    
Sbjct: 112 TIIRLCDWFGIENLICSLDTVDCYN----PKVVQASMGSLTRVEIFYSDLVNVLGAHKNI 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNV 265
            +  +  + + +  + K DK  +++G E  G+  + Q   ++   +   G I   ++LNV
Sbjct: 168 PVFGTMLNGENIYSKKKPDKALIVMGNEANGISEEIQALISNKITIPQFGEIQETESLNV 227

Query: 266 SNAAAVALYITQN 278
           + A ++ L   + 
Sbjct: 228 ATATSIILSEFRR 240


>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
          Length = 311

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96
            R   +     + G ++V  AL    P+  ++       +   R            +   
Sbjct: 59  RRRKKENGPNMVAGRNSVLEALREDVPATAMYVAGRIDSDDRVREAITLATKRGISMLEA 118

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
               +D++   +A+HQG+AL+  P                  + LL+ LD + DP N+GA
Sbjct: 119 SKPDLDRLTD-DAIHQGIALQIPPYDYAEPRDLLEVAADRAEAPLLVALDGITDPRNLGA 177

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF   G+I  +R + S +A   K+++GA   I   ++ NL  A+ ++       
Sbjct: 178 IVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQNVFV 237

Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL  D +  L +     D + +++G+EGKG+     +    +  + +    ++LN   A
Sbjct: 238 VGLDMDGEVELPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIA 297

Query: 269 AAVALYITQNHF 280
           AAV+LY      
Sbjct: 298 AAVSLYEVARTR 309


>gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +  + G H    A    +  +  +   ++   R+   +       V  V P+ + ++   
Sbjct: 28  SYLIEGWHLFEEAEKAGAEFLN-IFVLEDYADRVSHFSM------VTYVTPEILKELTDS 80

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +     +A    P L             +VL+ V DP N+G ++R+A A   DG++ +++
Sbjct: 81  KTPQGIIAELAMPSLPLE---NLKVGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEK 137

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +    +S  G+  H+P  R +      +  +          S      +    N 
Sbjct: 138 SADIYNQKTLRSMQGSHFHLPIWRTNVYEACQKLQNLDVPLIATTLSKESVSYKTVEHNG 197

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             AL++G EG G+     + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 198 NFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246


>gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
 gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516
 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
          Length = 228

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 105/224 (46%), Gaps = 14/224 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           +   K+   +            +  +    +DKI+ K   H+G AL+     +  +    
Sbjct: 4   IYQKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGFALKLKLEKNKNVKTQT 62

Query: 131 NSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + 
Sbjct: 63  KDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVL 122

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++SGA +++  + ++N+ + +  + ++GF         +   + +I + KIALILG EG
Sbjct: 123 RTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEG 182

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           KG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 KGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 226


>gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 269

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 4/252 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++   + +                 +  AL    +        +  L  L       
Sbjct: 16  DYTQLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEKWLDDLQDVLGAY 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        +++I G       +A    P   P  D +  ++ + VL+ + D  N+G
Sbjct: 75  PDVPAFIGSAALLEEITGFHLHRGAMAAMQRPAPVPLPDLLAGARRVAVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ + R          + + G +  +P+ R+S+    L  +   GF 
Sbjct: 135 AIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKEHGFT 194

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L   +             +K+AL+LG EG G+  +T         + M   + +LNV
Sbjct: 195 VAALELTADARDVDAVAAQNPEKLALVLGTEGAGMSAETLAAVDLAVKIPMRNGVDSLNV 254

Query: 266 SNAAAVALYITQ 277
           + A+AVA +  +
Sbjct: 255 AAASAVAFWELR 266


>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 270

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 7/259 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---- 80
           +++   ++  +    ++H  +   + L G+  + AAL      +  L      L      
Sbjct: 12  QHNIHVRQYLALKNNTKHNPEH-LITLEGLGPIQAALEAGLE-LSCLFVCPERLRGGDGM 69

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              +  +     +  V  + +  +V  E      A+        +    R    L++LD 
Sbjct: 70  ALIELAITRKIHLYQVSEKVLGSMVDWEGPDGLAAMVRLRRYDLSHLQPRQKGTLLILDG 129

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +  P NIG ++RSA      GII T+      +      AS        I  S++  A  
Sbjct: 130 LQIPGNIGTVIRSADGAGAHGIIITQ-SRQRLTHPKLVRASMGSLFALPIVESDVETAYA 188

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +  +G+Q +  S  ++    Q   + + A+++G E +G+             + M G  
Sbjct: 189 WLKRYGYQVVTTSPRARVSFRQARYSTRTAIVMGNEREGVSEDWFARHDLSVSIPMHGRA 248

Query: 261 KALNVSNAAAVALYITQNH 279
            +LNV NAA + LY   + 
Sbjct: 249 DSLNVGNAAVLMLYEVLHQ 267


>gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 254

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 4/236 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H     L    + I+ LL T  AL + +          V  +     
Sbjct: 23  YREETGLYLIEGFHLFEETLKANRKFIY-LLGTDEALNKAEEAGVSLDAKNVILINKAIA 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +   +         ++   D   N    ++LD++ DP N+G I+R+A A   +G
Sbjct: 82  RHLSSTKNSQEIF---AVLKIAQPKDFSFNYGKWVLLDNLADPGNVGTIIRTADAAGFNG 138

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +       +    ++  G+  HI  I         Q   S       +   + K L 
Sbjct: 139 VVLSPESVDLYNPKTQRAMQGSQFHIDIIIKDLTDVITQLEASDIPVYASMLDKTAKKLP 198

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              K  ++ L++G E  G+       + +  ++ + G  ++LN + AA + +Y   
Sbjct: 199 DFEKVAQLGLVIGNEAHGVSDFIANLSDTKLYIPIFGQAESLNAAVAAGIMIYHFA 254


>gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 267

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   +++         +   GV  V   L++       LL       +L  D    
Sbjct: 17  DFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTP-SALLGVARRYDQLAADLA-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + +IVG       LA+   P      + V  ++ + VL+ VND  N+G
Sbjct: 75  VDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++   R S        + + G +  +P+ R+    D L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQ 194

Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                   + + L   +  +++AL+LGAEG GL  +        A + M     +LNV+ 
Sbjct: 195 LIAMTPDPAARNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERVR 265


>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
 gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
          Length = 345

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 96/273 (35%), Gaps = 26/273 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +          I  LL           +A 
Sbjct: 66  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCRFELDAIDYLLLMDGV---EVPEAL 122

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------SQL 134
                 V  V    + K+ G ++V    A+    + +   D   +             + 
Sbjct: 123 REFSGDVVHVSAAVMKKVSGMQSVDSTEAIAVMHMPNHFRDLGSHEDGDALDGLLSYPKR 182

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244
                           G    S    +              N+ + L+LG+EG GL  +T
Sbjct: 243 HDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCLVLGSEGNGLSAET 302

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 303 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 5/247 (2%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP- 92
           ++   +S    +     + G   V  A+   + ++  L  T+ AL R     +       
Sbjct: 5   RALAGRSS-RQRHGRFLVEGPQAVREAVLFAASRLRDLYVTRAALERYPEIVDAARAADR 63

Query: 93  -VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V  V  + + ++ G       +       L   +   R  +L+ V   + DP N G ++
Sbjct: 64  FVHPVTDEVMARLSGDAQGIIAVVDAAEHSLDDVVS--RAPRLVAVCAQIRDPGNAGTVI 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A   D ++ T     + S  + +S++G+L H+P +    L +A+  + S     + 
Sbjct: 122 RAADAAGADAVVLTTGSVEATSPKVVRSSAGSLFHLPVVTGVTLQEAVAALRSAHLAVLA 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             +     +E        A + G E +GL       A ++  + + G  ++LNV+ AA V
Sbjct: 182 ADASGTTDVETAPLAAPSAWVFGTEAQGLTADELALADAVVRVPLRGHAESLNVAMAATV 241

Query: 272 ALYITQN 278
            LY +  
Sbjct: 242 CLYASSR 248


>gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 240

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASDIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +      L K+          
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +             ++A+++G EG GL P+T   A  +  + M   + +LNV
Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252


>gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 233

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 6/225 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V  AL N       LL  +N              FPV+ V     D++  +     
Sbjct: 8   GKNSVLDALQNNWPIQKVLLLHENNKH-----LFKNVNFPVEVVRRDKFDELTNENHQGF 62

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              ++     +       N +L++VLDH+ DPHN+GA++RSA A     II  +  S   
Sbjct: 63  IALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIILPRDRSAEI 122

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ++ + K +SG    I +IR+++++  +    ++  +        + K   Q     K  L
Sbjct: 123 NSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQINYPYKSVL 182

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++G EG G+   T        ++   G +++LNVS A  + L+  
Sbjct: 183 VVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFEM 227


>gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
 gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
          Length = 250

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTI 101
               F++G H     L    + KI ++                        ++ VP   +
Sbjct: 3   SSKDFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D++V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA
Sbjct: 63  DRLVD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G   
Sbjct: 122 DATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 E   K  K  L++G EGKG+ P  ++       L M G +++LN S A  V LY
Sbjct: 182 AGTDYREWNAK-GKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLY 240

Query: 275 ITQN 278
              N
Sbjct: 241 QAYN 244


>gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
 gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
          Length = 326

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 15/257 (5%)

Query: 37  NQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL----PHPF 91
           + +     + E    + G + V  AL         L               +        
Sbjct: 64  DSRPTTRPRGELPETVVGRNPVVEALRAG-VPATALYVAGGLATDERIAEAITGAAERGI 122

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
           P   V    +D++ G  A+HQG+AL   P      +           + L++ +D V DP
Sbjct: 123 PQLDVSRPELDRLTG-NAIHQGVALVVPPYQYAHPEDLLSRARDSGRAALIVAVDGVTDP 181

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI+RSA AF   G++  +R S   +A   ++++G    +   R +NL   L+   +
Sbjct: 182 RNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAA 241

Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G    GL +D     +        + L++G+EG+GL   T+        + M   +++L
Sbjct: 242 QGLMIAGLDADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESL 301

Query: 264 NVSNAAAVALYITQNHF 280
           N S AA V L       
Sbjct: 302 NASVAAGVVLAEVARRR 318


>gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 260

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD 82
            R++   K ++   Q S    +   ++L G H   AAL    +    + A         +
Sbjct: 10  SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPEWERE 69

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           W A          V    +   V        +        +P L A   +   +VLD + 
Sbjct: 70  WGAAAARNV----VLADALWADVSGLESPARMGFVVPVPEAPVLQAGLPT---VVLDRLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +   K  +   S  + ++  GA              A+  +
Sbjct: 123 DAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHF----ALHLVEGLAVDDI 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     +  SS     L +         ILG EG+G+    Q+ AT +  +  PG  ++
Sbjct: 179 DALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEES 238

Query: 263 LNVSNAAAVALYITQ 277
           LNV  AAA+ L+ + 
Sbjct: 239 LNVGAAAAICLHASA 253


>gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 252

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT+ AL R      L    PV  V  +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--LVSEVFATEAALDRFG---ALLADAPVTPVTERAAK 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P +S        + L+ V   +++P N G ++R A A     +
Sbjct: 68  ALSDTVTPVGLVAVCRLPEVSLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKK 218
           +         ++   ++++G++  IP I   +    +Q++          T+   +D   
Sbjct: 128 VLAGNSVDPYNSKCLRASAGSIFSIPVISDPDEARVVQRLRDAGLRVLATTVDGEADLDD 187

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +    +  A + G E  GL       A     + MPG  ++LN+++AA++ LY +  
Sbjct: 188 PDLEAELTEPTAWLFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQSAR 247

Query: 279 -HFAK 282
               +
Sbjct: 248 AQRRR 252


>gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster]
          Length = 386

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 28/293 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 87  NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 146

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +  +        +  VP   +            +A+   P        +   Q
Sbjct: 147 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 206

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 207 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 266

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P                   D      +   Q    ++ +    + +       LI+G
Sbjct: 267 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 326

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            E  G+  +               ++ +   I +LNV++A  + L+  +    
Sbjct: 327 GESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLI 379


>gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster]
 gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog
 gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster]
          Length = 407

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 28/293 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +  +        +  VP   +            +A+   P        +   Q
Sbjct: 168 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P                   D      +   Q    ++ +    + +       LI+G
Sbjct: 288 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 347

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            E  G+  +               ++ +   I +LNV++A  + L+  +    
Sbjct: 348 GESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLI 400


>gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107]
          Length = 259

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 9/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVK 94
           K++       + +YG  TV  AL   +  I++L    +       D            + 
Sbjct: 11  KAKKRFFDSLMTIYGRKTVLEALQEKAVSIYRLHLANSNKRAEILDQIIELAKLKGADII 70

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149
                 + +I    +  QG+A +       T +       +N+  L+ LD + +P N+G 
Sbjct: 71  YHERNALSRISKNASQDQGVAADLQLPGYQTYEQFLATPPKNNYRLLALDGITNPQNLGM 130

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA A + DGI+   + +     ++ K+++G L   P +R  NL DAL+     G   
Sbjct: 131 IIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPILRCQNLVDALKDFSRHGASL 190

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LSS +   L           +LG E  G+     +  T    + M   +++LNV+  A
Sbjct: 191 CALSSHAHHNLSGFRPEGASIYVLGNETHGVSDPVFQLCTEKIKIPMNNGVESLNVAVTA 250

Query: 270 AVALY 274
           A+  +
Sbjct: 251 ALIAF 255


>gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 270

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 3/250 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  + + R  ++       G   V  A+ +       L+A +        D    
Sbjct: 17  DYTELRDVSLRRRLETERGLFIAEGEKVVRRAVESGHAPRSFLMAPRWIDG--LGDVIDG 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   +    I+ + G       LA    P   P    +  ++ ++VL+ + D  N+G
Sbjct: 75  TDAPCYVLEESVIEHLTGFHVHRGALAALERPPARPAATVLAGARRVVVLEDLVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGF 207
           AI RSA A   D ++ + R +        K + GA+  +P+ R+ +     +    +   
Sbjct: 135 AIFRSAAALGWDAVLLSPRCADPLYRRSIKVSMGAVFRLPWARVDDWASTPELLADAGFT 194

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  +   P+++   +  +AL++G+EG GL    +  +   A + M   I +LNV+ 
Sbjct: 195 AVAMTLGEGAVPIDEVDTDRPLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAA 254

Query: 268 AAAVALYITQ 277
           + AVA +  +
Sbjct: 255 SVAVACWQLR 264


>gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 243

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 95/251 (37%), Gaps = 21/251 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K + S +QK ++  +       G+  V+  L +    +  +  T      L         
Sbjct: 9   KLITSLSQK-KYRQKHNLFIAEGIKVVNELLQSDFE-VALIFCTNEFKTSLP-------K 59

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V    ++KI   ++ ++ L+L       P    ++NS L++ LD +NDP N+G I
Sbjct: 60  AKIVRVSETELNKISSLKSPNKVLSLF----KIPEDKPIQNSGLILALDAINDPGNLGTI 115

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F    +I +K      +  + +++ G+L  I    +       +         +
Sbjct: 116 IRLCDWFGISQLICSKDTVDCYNQKVVQASMGSLTRISIQYLDLKNYLDKSPLPTFIADM 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSN 267
              +  K  +       +  L++G E  G+  + +        +   G     ++LNV+ 
Sbjct: 176 NGENIYKTNV-----PKEGILVMGNEANGVSEEIKNQVQHKISIPRFGETQKTESLNVAM 230

Query: 268 AAAVALYITQN 278
           A A+ +   + 
Sbjct: 231 ATAILISEFKR 241


>gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 252

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 8/246 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPP 98
                    LYG + V  AL          +A  +A          A      PVK +P 
Sbjct: 2   RERPRGTELLYGRNAVMEALRGRRSLRRLFVAEGSARQPRVAAIIQAAEKRRLPVKHLPQ 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           + + +++  +  HQG+ALET P        L      + ++ LDH+ DP N+  ++R+A 
Sbjct: 62  RDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNLATLMRTAE 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++   R +   +  +  +++GA+EH+    ++NL  AL++    G+  + L + 
Sbjct: 121 AVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGYWVVALEAG 180

Query: 216 SKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +   L++G+EGKG+ P     A     L M G + +LN + A ++ALY
Sbjct: 181 PEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 ELLRRR 246


>gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 288

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 22/267 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     ++R               +  AL +    I  L         +   +  D 
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFVCIDE 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +     PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196

Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                         +    D++ALI G EG GL   T   
Sbjct: 197 RELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M   + +LNV+ ++AVA Y
Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
          Length = 387

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 120/309 (38%), Gaps = 39/309 (12%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFN------------QKSRHTSQPENL 49
           N I K    +    +  H++K  +  +   ++Q               +K    +Q +  
Sbjct: 72  NEIHKSTKSQRKPSQAVHFSKTGK--KLSSELQKLRFEDLSESESSSIRKDSQPNQDKEF 129

Query: 50  -FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPVKTVPPQTIDK 103
             ++GV     AL    R    L          D         +     +K V  QT++K
Sbjct: 130 EIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEAIRRGVQIKRVNKQTLEK 189

Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +     VHQGL L+ +            +L+      L +VLD V DP N+GAILRSA  
Sbjct: 190 MCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYY 248

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------T 209
              D I+++   S   +  ++K+++G +E +     SNL   ++     G+Q        
Sbjct: 249 LGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLE 308

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNV 265
            G S  +         +    L++G EG GL  + ++    +  +     M   +++LNV
Sbjct: 309 EGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNV 368

Query: 266 SNAAAVALY 274
           S A  + L+
Sbjct: 369 SVATGILLH 377


>gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 288

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 89/256 (34%), Gaps = 13/256 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-------ATKNALARL 81
           DY  +     + R   +       G   +  AL    +    L+          +  AR 
Sbjct: 22  DYVALTDVALRRRREPEQGLFIAEGERVIERALRAGYQPRSALVSPARLPGVPASFWARP 81

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D   P   PV    P  +  I G E     LA             +  ++ ++V + +
Sbjct: 82  SPDRPAP---PVYLAGPAVLAAITGFEVHRGALASMCRREPLDPAHLLSTARRVLVCEDL 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDA 198
               N+GAI RSA     D ++ + R +        + + G   A+ +            
Sbjct: 139 VSHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAALSL 198

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+                +        +D++A++LG EG GL  +   TAT  A + M  
Sbjct: 199 LRTAGFEVVALTPAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRARIPMAH 258

Query: 259 IIKALNVSNAAAVALY 274
            + +LNV+  AA+A Y
Sbjct: 259 GVDSLNVAATAAIACY 274


>gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 240

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I++ NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
 gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
          Length = 278

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 93/276 (33%), Positives = 144/276 (52%), Gaps = 16/276 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--------NLFLYGVHTVSAALNNPSRKI 68
            SH  +  R        Q  + +S+   Q +          +++G H V AAL NP R  
Sbjct: 2   SSHSERNDRKRPS---AQGRDFRSKPRKQNDFSRGQGDAKDWIWGTHAVEAALANPRRPA 58

Query: 69  -FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +LLAT +   RL           V  +  Q I K + + AVHQGLAL+       T+ 
Sbjct: 59  PKRLLATPDRAKRLAPHLQKLTCLQV--MEGQEIAKQLPQGAVHQGLALKIDEPEPLTIA 116

Query: 128 A--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                    L++LD + DP NIGAI RSA AF   G+I   R++P+ S VLAK+A GA++
Sbjct: 117 ELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVD 176

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             PY R+ NL+ AL+++   G++ + L+ ++++ L+  + +    L+LG+EG+G+R    
Sbjct: 177 KAPYARVVNLSRALEELADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVA 236

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           E   ++  + MPG  ++LNVS AAA+ALY      A
Sbjct: 237 EHCDALGKIPMPGGFESLNVSAAAAIALYEASKVRA 272


>gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 258

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++  +Q S    +   ++L G H  SAAL    R    +     +   L  
Sbjct: 11  SRDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLCSAALARGQRPAIAVF--SESFWPLAP 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +           V    + + +        +           LDA   +   +VLD + D
Sbjct: 69  E-EYAQAATKNVVIADALWQDISGLESPARMGFVLPLPAQQALDAQSPT---VVLDRLQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    I   K  +   S  + ++  GA               +Q + 
Sbjct: 125 AGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGMGAHF----ALRLVEGLDVQDID 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     L +         I+G EG+G+ P  Q  A+    +  PG  ++L
Sbjct: 181 RLRVPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVSPDLQRRASRHIRIVQPGGEESL 240

Query: 264 NVSNAAAVALYITQ 277
           NV  AAA+ L+ + 
Sbjct: 241 NVGAAAAICLHASA 254


>gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 261

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 10/235 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +YG      AL +P  +   L  + +           DA      PV     + + +I  
Sbjct: 20  VYGRKPALEALRDPLLQCHALHLSSSNRGGGIITELLDAAAKKSIPVHEHSREALARISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                QG+AL+       +L            Q ++ LD + +P N+G ILRSA A   D
Sbjct: 80  NGKQDQGVALDILCPSFRSLQTYVEELPGLAPQRVLALDGITNPQNLGMILRSAAAGHID 139

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++ + + + +   ++ K+++G L   P +   +  +AL+++     +   L +++ + L
Sbjct: 140 AVLWSSKGNAALGPLVIKASAGTLYRAPLVMCDSQVNALRRLAQQEVEICSLEANASQTL 199

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +      +A +LG E +G+     + A     + M   +++LNV+  A++  + 
Sbjct: 200 FEFTPKKHVAYVLGNETEGVSKDVVQLADKSLSIPMNNGVESLNVAVTASLIAFA 254


>gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 288

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 89/267 (33%), Gaps = 22/267 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     ++R               +  AL +    I  L+            A +  
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFACIDE 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTGM 196

Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                         +    D++ALI G EG GL   T   
Sbjct: 197 RELHDLGFTTVAMALEDDSISLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M   + +LNV+ ++AVA Y
Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
 gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
          Length = 232

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 15/236 (6%)

Query: 51  LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           + G++ V  AL +    KIF L    N   +           PV   P            
Sbjct: 3   VMGINGVMEALKSGKVNKIFVLKDATNPRIKEIVALAKKKKIPVVYTP--------QLPK 54

Query: 110 VHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             +G+  E +P+    +D      +R    ++ LD V DP N+GAI+RSA  F C G++ 
Sbjct: 55  EARGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAGVVI 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            KR     +  +AK ++GA+ H+   R+ NL + L+K+  +G   +G   D +       
Sbjct: 115 PKRRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDGEPLR-NVD 173

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +A+++G E KGL    ++    +A +   G I +LN+S A A+ +Y  +   
Sbjct: 174 LSPPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMYEFRRRL 229


>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 270

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 98/253 (38%), Gaps = 5/253 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLDW 83
           +++ K++++   K +  SQ       G+  V  A+    R    +    A+ + L R   
Sbjct: 14  NQEIKELRALETK-KGRSQQNAFVSEGLRHVVEAVRRGWRVSRLVLSESASSSELLREAI 72

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V TV  + + +I  ++     +A+                   + L+ + D
Sbjct: 73  QGCEASGGRVLTVTDELMTRIARRDNAQSVIAVIEQRWGDLEAVIAAPRVTWLALEGIRD 132

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+I+RSA AF+  G++         S    +++ G++     +   +    L    
Sbjct: 133 PGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIV-NVPLIRLDEAAYLDWHR 191

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            W  +T+G    ++   E   +     L++G E  GL  +   T   +  + M     +L
Sbjct: 192 GWTGRTVGTHLRAELQPESVERGSATLLVMGNEQSGLPARIAATCNQLVRIPMRDGADSL 251

Query: 264 NVSNAAAVALYIT 276
           N++ A A+ LY  
Sbjct: 252 NLAAATAIMLYAV 264


>gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032]
 gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032]
          Length = 267

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI++   E+I                DY+ +     ++R           G   +  A
Sbjct: 1   MELITEPDDERI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L         L+  K    R+D  A+L     PV    P  + +  G       LA    
Sbjct: 46  LRAGYPARSYLVDAK----RVDQLADLDTGDAPVYAATPDVLQEATGFHVHRGVLASFRR 101

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L    + +  ++  ++L+ VN+  N+GAI R+  A   D ++ +   +        + 
Sbjct: 102 KPLPSAAEVLATARRTVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRV 161

Query: 180 ASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           + G   A+ +            ++                        +  + AL+LGAE
Sbjct: 162 SMGEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRARAALLLGAE 221

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G GL       +     + M   + +LNV+ A AVA +    
Sbjct: 222 GAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACWELGR 263


>gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 266

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 81/238 (34%), Gaps = 7/238 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
                        +  AL+     +  L   K    +           PV T   + + K
Sbjct: 27  KAAGIFVAESPKVIRTALDAGFEAVSMLAEKKYVSGQAADIIARLGDVPVYTADREQLTK 86

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           I G +     L       +    +  R    + VL+ + +  NIGA+ RSA A   DGI+
Sbjct: 87  ITGFKLTQGVLCAMKRRAMQAFPENARR---IAVLEDIMNQTNIGAVFRSAAAMGIDGIL 143

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T   S        + + G +  I +           +            +     +   
Sbjct: 144 LTDGCSDPLFRRTIRVSMGTVFQIAWRYAGTSDSGYIEKLKADGWLTAAMALRDDTVSIA 203

Query: 224 IKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     +K+A++LG EG GLR  T         + M   + +LNV+ A AVA + T+
Sbjct: 204 DERLKNAEKLAIVLGTEGDGLREDTISACDLTVKIPMAHGVDSLNVAAAGAVAFWETR 261


>gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 98/256 (38%), Gaps = 5/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    +KS+     E   + G+  +S A          L+        LD + 
Sbjct: 9   NNPFIKNLLLLQKKSKLRKSQEEFVIEGLQEISYAQKATYEFSQVLVCLDLFDNALDLEK 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144
                  +  +     +K+  + +    +A+     L    L     + L+M+ +    P
Sbjct: 69  F---DCEITEISLDVFEKLAYRSSTGGLIAIAKPKDLRIENLRLSSKTPLIMIAEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A   D +I     +   +  + +S+ G +        +   + +  + +
Sbjct: 126 GNIGALLRTADAAKLDAVIIANPKTDLYNPNIIRSSVGTVFTNSIGTGTTS-EIIDFLKN 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +    +         E   +  A+++G E +GL  + +  A  +  + M G + +LN
Sbjct: 185 NNIKIYAAALQDSSSYLAEGFKEATAIVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLN 244

Query: 265 VSNAAAVALYITQNHF 280
           VS +AA+ ++  +   
Sbjct: 245 VSVSAAILIFEAKRQR 260


>gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 246

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+      I ++   K     L  + N        P   VP + + ++   
Sbjct: 6   IFGLRPVIEAIEAGKT-IDKIFIQKGLSGTLFTELNTLISQQKLPCSYVPVEKLQRLT-- 62

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    +P+    L+             LL++LDH++D  NIGAI+R+A      
Sbjct: 63  RGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSDVRNIGAIIRTAECTGVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S S    + K+++GA+ +IP  ++ NL D +  +   G + IG +  +   L
Sbjct: 123 GIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQGSGIKVIGATEKASSLL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q    + +A+++GAE  G+     +     A L + G I +LNVS A    LY      
Sbjct: 183 YQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSLNVSVACGAFLYEVVRQR 242


>gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 249

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIV 105
            F+ G H   AAL +  ++I ++   K                    +  VP   +D++V
Sbjct: 7   EFVIGRHPAVAALKSD-QEINKVFIQKGLRTDAIAQIIKLAKERHLVISNVPKTKLDQMV 65

Query: 106 GKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+AL  A     T+D              L++LD + DPHN+G+I+R+A A  
Sbjct: 66  DHQ-NHQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTADAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   ++V+AK+++GA+E +P  R++NL     K        +  +     
Sbjct: 125 VHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNL-VQTAKELKARGVWLFGTDMQGT 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +      +A+++G EGKG+ P  ++T   M  + M G +++LN S AA++ +Y
Sbjct: 184 DYRRWDAQGAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLLIY 239


>gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
 gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 92/271 (33%), Gaps = 22/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     ++R               +  AL      +  L+            A +  
Sbjct: 17  YVNLTEIQLRNRLEPAKGLFIAESPKVIDRALAAHREPLSLLVERPWLEGMASMFARIDE 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L+      L    +  R +  + V++++ DP 
Sbjct: 77  QWGPDIPVYVASPEQLKRLTGYRLHRGALSAMRRWPLPSVEEVCRGAHRVAVMENIVDPT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  +P+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGDDKHYWPFKGL 196

Query: 206 GFQTIGLSSDSKKPLEQE------------------IKNDKIALILGAEGKGLRPKTQET 247
                   +     LE +                     DK+ALI G EG GL   T   
Sbjct: 197 EELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFGTEGDGLNRHTIAR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 257 ADLTVKIPMSHDVDSLNVAASSAVAFYATRR 287


>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
 gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
          Length = 246

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 99/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +       + R                    +     + G+H +  A
Sbjct: 1   MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGLALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +   +       D           +  +  + + G     QG       
Sbjct: 42  YQSGIEIKQLFVIEPDRTDEDLIDYANET----YEINMKVAEALSG-TVTPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +A +    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PHYNDTEAQQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +     T   +            + +     ++     + AL+LG EG+G+
Sbjct: 153 QGSIFHIPIVIKGLTTYINEFDGPVYG----TALEDAVSFKEIEAQSRFALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NQELLQQTTQNLIIPIYGKAESLNVAIAGSILLYQLK 245


>gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 266

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 84/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P +    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPAVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +      L K+          
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +             ++A+++G EG GL P+T   A  +  + M   + +LNV
Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252


>gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14]
 gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14]
          Length = 266

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 85/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPGKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +      L K+          
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGSLSDLGKLGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +             ++A+++G EG GL P+T   A  +  + M   + +LNV
Sbjct: 200 DNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLNV 252


>gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba]
 gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba]
          Length = 407

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 93/294 (31%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K 
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKE 167

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +   A L     +  VP   +            +A+   P        +   Q
Sbjct: 168 QLALVKEEVGFAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLDKNLAEQQ 227

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P                   D      +   Q    ++ +    + +       LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+                  ++ +   I +LNV++A  + L+  +    +
Sbjct: 348 GESHGVSEDAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401


>gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 240

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIG I+RSA A
Sbjct: 59  DILSKLLENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGTIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 247

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 101/244 (41%), Gaps = 14/244 (5%)

Query: 50  FLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103
           +L+G + +   L   ++       +   +  +     +         F ++ + P+ +  
Sbjct: 2   YLHGRNVLRELLTVDSSALNVKRIVFTNQKNVDSQLLELAEESKARGFRIEEMAPEKLAN 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  +E  HQG+ ++         +        + +  +++LD + DPHN+GAI+R++VA 
Sbjct: 62  LC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDPHNLGAIIRTSVAV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I  T   + +E        S  L     I         +++       I  S    
Sbjct: 121 GADAIAITS-SNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKEKGFWIYASDMEG 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P  +   ++K A++ G EGKG+R   +E +  +  + M   + +LNV+ +AA+ L+  +
Sbjct: 180 IPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIILFDRR 239

Query: 278 NHFA 281
              A
Sbjct: 240 RQLA 243


>gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
 gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
          Length = 276

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 5/273 (1%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQL 71
              + +   +     RD++                  +++G H V AAL+NP R    +L
Sbjct: 3   SHSERNDRKRPSAQGRDFRSKPRKPNDFSKGQGDAKDWIWGTHAVEAALSNPHRPAPKRL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--V 129
           LAT +   RL           V  +  Q I K + + AVHQGLAL+     S ++     
Sbjct: 63  LATPDRAKRLAPALQKLSCLQV--MEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELAA 120

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N   L++LD + DP NIGAI RSA AF   G+I   R++P  S VLAK+A GA++ +PY
Sbjct: 121 SNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVPY 180

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ NL+ AL+++   G++ + L+ ++++ L++ +      L+LG+EG+G+R    E   
Sbjct: 181 ARVVNLSRALEELADLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHCD 240

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  + MPG  ++LNVS AAA+ALY       K
Sbjct: 241 VLGKIPMPGGFESLNVSAAAAIALYEASKPRGK 273


>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 272

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 10/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82
            +   K+     ++ +   + + + + G   ++ AL      +   +      +A ++  
Sbjct: 9   QNLRVKQAVKLRER-KARDEQQRIIIDGEREITRALGAGVVALELFVLDGVELSATSQQT 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMV 137
                     +  V  Q ++K+   + V + +                  A +   L+ V
Sbjct: 68  MRHARESGATILPVSRQVMEKLAFGDRVEEVILVAESPSPALDTFLQDKLAAKRDLLVAV 127

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V  P N+GAILRSA A   DG+I         +    +++ GAL  +P I ++    
Sbjct: 128 VEGVEKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIRASLGALFTLPVIGMTVP-Q 186

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL  +    FQ +    D            + A+ILG+E +GL  +          L M 
Sbjct: 187 ALAWLRMHQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIRAISLPML 246

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G + +LN+S  AA+  Y      
Sbjct: 247 GTVDSLNLSVTAAILFYEALRQR 269


>gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM
           15829]
          Length = 367

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 123/353 (34%), Gaps = 81/353 (22%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQ-------------------SFNQKS------ 40
           KK ++K  +++++H+    +     K+ +                   S  ++S      
Sbjct: 12  KKPTKKNKNVQNAHFTSNEKGAPYKKRTRVSGDSGTRARSSSAHARSFSSQKRSSGASSA 71

Query: 41  --RHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPH 89
             R   +       + G      AL      + +LL  +N       A            
Sbjct: 72  YMRPRRERGVRAPMIEGRRACFEALEA-HLPLKKLLVQENMNAALQTADVERLITCARER 130

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----------------------- 126
               + V    +D +    A HQG+  E AP                             
Sbjct: 131 GIACEYVKKSAMDSLSSHGA-HQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADAS 189

Query: 127 --------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                                A + + L+++LDHV D  N GAI+RSA       +I   
Sbjct: 190 AADASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIAN 249

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               S      K+++GA+ H+P +++ NL  A+ ++   GF  IG S  +++ +      
Sbjct: 250 ARCASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFT 309

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K+ LI+G+E  G+    Q+    +  L   G I++LNV+ AA V  Y     
Sbjct: 310 GKVCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 362


>gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
 gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
          Length = 286

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 20/267 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------NALARLDW 83
           Y ++     +++   +        +  +  AL      +  L+  +      + L R+  
Sbjct: 17  YARLTEAQLRNKLEPEKGIFIAESLKVIDRALAGGMVPLSVLMTPEWMDAAADMLERIQQ 76

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMV 137
                   P+   P   + K+ G +     L     P +    D +   +       + V
Sbjct: 77  AGEGGADVPIYVGPADELQKLTGFKLTRGILCAMRRPKMPSAEDLLATCRNGGPARRVAV 136

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + D  N+GAI RSA A + D ++ T            + + G +  +P+ R+     
Sbjct: 137 LEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVH 196

Query: 198 ALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                                +K+AL+ G EG GL P+T  T  
Sbjct: 197 DWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + M   + +LNV+ A+AVA +  
Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283


>gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40]
 gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 256

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDKIVG 106
           +YG   V   L + S +I +L    +       D            V     Q + +I  
Sbjct: 21  VYGRKPVLEVLQDNSLEIHKLHLADSNKPAAILDDMVKLAKKRGIEVCYHDKQALSRISK 80

Query: 107 KEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                QG+A +            L + +    ++ LD V +P N+G I+RSA A   + I
Sbjct: 81  NSKQDQGVAADVIGKGFQSHQSFLSSNKKHYRILALDGVTNPQNVGMIIRSACASPINAI 140

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  ++       ++ K+++G L   P +R   L   L+     G   IGL +++   L +
Sbjct: 141 ILPEKGCAKLDPLVIKASTGTLFRAPILRCKTLASCLKAFAESGADIIGLDANAPHTLGE 200

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E        +LG E +GL    +        + M   +++LNV+  A++  +
Sbjct: 201 EPLTGAKVFVLGNETEGLSSDVRAICNKHVSIPMLNNVESLNVAVTASLIAF 252


>gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 272

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 10/257 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  ++    ++R           GV  +  AL         LL +++    L     L
Sbjct: 19  RDYTALKDVQLRARREPAEGLYLAEGVEVIRRALAAGHVP-RSLLLSRSRFEDLADV--L 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVN 142
           P    V   P      + G + +H+G           ++             L+VL+ V 
Sbjct: 76  PAGATVFVAPVAAFADLTGVD-LHRGALASMQRPAQRSVPDLLASLPAGPARLVVLEDVV 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQK 201
           D  N+GA+ RSA AF  DG++ + R +        + + G + H+P+ R ++        
Sbjct: 135 DHTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDLDLL 194

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +         ++    L      +++AL+LG EG GL  +    A  +  + M   + 
Sbjct: 195 RSAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADLVVRIPMDPRVD 254

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVAL+ T+ 
Sbjct: 255 SLNVAAASAVALWETRR 271


>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 279

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 11/247 (4%)

Query: 45  QPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +     +  + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGSDGTSTLTELFATVEAADRYADIVGAAHAAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  +         + +                 L+ VL HV DP N G +LR A A  
Sbjct: 88  DVLADVSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAG 147

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++ T       +    +++ G+L H+P      +  A+Q +   G + +        
Sbjct: 148 ADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVQGLRGAGVRILAADGAGTD 207

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E          A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 208 DLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267

Query: 275 ITQN-HF 280
            +     
Sbjct: 268 ASARAQR 274


>gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
          Length = 290

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 7/254 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       +RH  +           +  ALN     I  L+  +   ++         
Sbjct: 33  YARFTEVQLLNRHEPEKGIFIAESPKVIERALNAGCVPISFLVEQRQVESQEQERLFRRG 92

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   + ++ G       L     P      +    ++ + VL++V +P N+GA
Sbjct: 93  NVPVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGA 152

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A + DG++ T+  S        + + G +  IP+  +        +  +   + 
Sbjct: 153 IFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGIAHLREL 212

Query: 210 IGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              +       +    +D       ++A++LG EG GL  +T         + M   + +
Sbjct: 213 GFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMSHGVDS 272

Query: 263 LNVSNAAAVALYIT 276
           LNV+ A++VA +  
Sbjct: 273 LNVAAASSVAFWQL 286


>gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
 gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
          Length = 246

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 15/240 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N        ++ K++  +            +  +    +DKI+ K   H+G 
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIEKLAKTQNIKILRISINELDKIL-KTKDHRGF 64

Query: 115 ALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+     +  +                     +++LD + DP N+GAILR+A  FS D 
Sbjct: 65  ALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNLGAILRTAEQFSIDL 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT++ S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   +
Sbjct: 125 VITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTIIFLKKHGFWIYASDIKGQDINK 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALILG EGKG+    ++ +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 IKINDKKIALILGNEGKGVHKLIKQNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays]
 gi|194693648|gb|ACF80908.1| unknown [Zea mays]
          Length = 365

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 26/273 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +    +     I  LL           +A 
Sbjct: 86  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGV---EAPEAL 142

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQL 134
                 +  V    + K+ G ++V    A+    + +   D                 + 
Sbjct: 143 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKR 202

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 262

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244
                           G    S    ++             N+ + L+LG+EG GL  +T
Sbjct: 263 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAET 322

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 323 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 354


>gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 252

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 16/256 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K ++S +QK ++  + +     G   V   +         L+AT++ +         
Sbjct: 6   AKIKLIRSLDQK-KYRKEHQLFVAEGPKLVDELI--GYFNCKLLVATQDWIQEHSNY--- 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H   +       + K    +   Q +AL   P       A++   L + LD V DP N+
Sbjct: 60  -HTEELILATQDELSKASALKTPQQVIALFEQPQYEIDNKAMQ-HSLCLALDGVQDPGNL 117

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F  + I  ++      +    ++  G L  +     S      + +     
Sbjct: 118 GTIIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGGLARVKIHYTSLT----EIIKQNPN 173

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---HMPGI-IKAL 263
             I  +    + +  +    K  +I+G EGKG+  + QE  +   ++    M     ++L
Sbjct: 174 IPIYGTFLDGENIYDKQLEQKGLIIMGNEGKGISDELQELVSHKLYIPNYPMNKESAESL 233

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A A+     +  
Sbjct: 234 NVAIATAIVCSEFRRQ 249


>gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           NEM316]
 gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 247

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A    ++ +  +  T+ A+ RL        P     V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPEEAIVVTDDVLKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +   L++  + V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R+                     S+     +   
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 195 KYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 90/252 (35%), Gaps = 20/252 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++ +  +   + G+ T+   L + S +++ + +T +     +   +  
Sbjct: 6   QIKLIKSLQLK-KNRNLHQLFVVEGLKTIQELLKS-SFEVYSVFSTDDHFVEENSAFSAL 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               + +V  + +  +        G            +        ++ +D + DP N+G
Sbjct: 64  ----ISSVDLKKMSSL----NTPNGYLGVFKMSQKKAIHDNAW---VVAVDTIQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    ++ +       +  + ++  G++  +    ++ +    +        
Sbjct: 113 TIIRLCDWFGIKDLVCSSDTVDCYNPKVIQATMGSITRVNVTYLNLIDFLEETGLPIYGA 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVS 266
            +   +     +       K  L++G E  G+  + ++       +   G    ++LNV+
Sbjct: 173 FMDGETVYTSQM-----PVKGILVMGNEANGVSAEVEKLVQKRIAIPQFGAQTAESLNVA 227

Query: 267 NAAAVALYITQN 278
            A A+ L   + 
Sbjct: 228 TATAILLNEIRR 239


>gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 261

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +    Q    F+ G H   AA+ +  +  K+F     +  +              V+ V
Sbjct: 8   SNNEQDQTAADFVIGRHPAMAAIKSDQQINKVFIQSGLQADVLNDIAKIAKKRNLIVQYV 67

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
           P Q +D++    A HQG+A+  A     T+D           +   ++LD++ DPHN+G+
Sbjct: 68  PKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGS 126

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++   G   
Sbjct: 127 IMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWI 186

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   +     + +  +  + LI+G EGKG+ P  +++   M  + M G +++LN S AA
Sbjct: 187 FGTDMNGTDYRQWD-ASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAA 245

Query: 270 AVALY 274
           ++ +Y
Sbjct: 246 SLLIY 250


>gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 255

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +    Q    F+ G H   AA+ +  +  K+F     +  +              V+ V
Sbjct: 2   SNNEQDQTAADFVIGRHPAMAAIKSDQQINKVFIQSGLQADVLNDIAKIAKKRNLIVQYV 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
           P Q +D++    A HQG+A+  A     T+D           +   ++LD++ DPHN+G+
Sbjct: 62  PKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGS 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++   G   
Sbjct: 121 IMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWI 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   +     + +  +  + LI+G EGKG+ P  +++   M  + M G +++LN S AA
Sbjct: 181 FGTDMNGTDYRQWD-ASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAA 239

Query: 270 AVALY 274
           ++ +Y
Sbjct: 240 SLLIY 244


>gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R]
 gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
 gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 276

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 25/287 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +IS     ++  ++D +++  R +    K                 +   G   V   L 
Sbjct: 6   VISDPADPRLDDVRDLNHSDSRPDLPGGK---------------GLVVAEGPLVVGRLLE 50

Query: 63  NPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +    +  ++  KN L       DA+L    PV  V  + + ++ G +     LA     
Sbjct: 51  SRY-PVRAIVGFKNKLDSFLDSIDASLVEGIPVYEVSRELLAEVAGFDMHRGLLATADRT 109

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +     + N++ ++VL+ V D  NIG++ R+A     D I+     +      + + +
Sbjct: 110 EEASVAQVLENARTVVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVS 169

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILG 234
            G +  +P+  +       Q+      +            E E         DK+AL++G
Sbjct: 170 MGHVLRLPFAHLEGTYTTWQRSLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVG 229

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
           AEG GL           A + M     +LN++ +AA+A Y       
Sbjct: 230 AEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSQR 276


>gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 244

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWV--KDLKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +       + +        +   L+++LD ++DP+N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A         +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNLNQNSIDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
 gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
          Length = 342

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 100/285 (35%), Gaps = 26/285 (9%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPSRKIFQ 70
           +H   +   ++   K      Q S +     +  + G   +         L   + ++  
Sbjct: 52  THIKSITSTSNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMEC 111

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
           L+    A      D++      V  +  + + ++   E++     ++         D   
Sbjct: 112 LILPDKAKVPEGLDSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVGDHQK 171

Query: 128 ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                    +   ++VL+ + DP N+G ++RSAVAF   GI          +    K++ 
Sbjct: 172 DADFRKWFPSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASR 231

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232
           GA   +P +  S       K         G  +   +       +           I L+
Sbjct: 232 GASFQVPIVSGSWHHLEALKDEFQMKMLAGHPASDDEQTPVSELSQGFADSLADIPICLV 291

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           LG EG+GL  K+ +    +  + M    ++LNV+ A  + LY+ Q
Sbjct: 292 LGNEGQGLSEKSLQEC-QLVSIPMARNYESLNVAVAGGIFLYMLQ 335


>gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 231

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLDAV 129
           ++   +    A       +       +  +   E  HQG+            L+  LD +
Sbjct: 18  RDRRMQDFLQAAKEAGVRLIAADETRLWGLAHTER-HQGVVARVEDLPLAQNLAELLDGI 76

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL+VLD V DPHN+GA LR A A     II  +  +   +A  AK ASGA + +PY
Sbjct: 77  AGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLNATAAKVASGAADTVPY 136

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I ++NL  AL+++   G   IG S D+   +     +  +AL++GAEG+G+R  T++T  
Sbjct: 137 ITVTNLARALRELKDAGVWVIGTSDDATASVYDTKLDGPVALVMGAEGEGMRRLTRDTCD 196

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + M G +++LNVS A+ V LY      
Sbjct: 197 EVMFIPMAGSVESLNVSVASGVCLYEAVRQR 227


>gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 236

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            +AL N +R+  +LLAT+N       +           V+ V  + ++ ++ K A HQG+
Sbjct: 1   MSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60

Query: 115 ALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    +S
Sbjct: 61  ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228
           PSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ +++      K
Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 292

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 93/283 (32%), Gaps = 28/283 (9%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALAR 80
           ++   +++++  +  KS+         + G   V  AL         +  +      L  
Sbjct: 10  SNPRAERVKAIARLAKSKGREATGEYLVEGPQAVREALKAHLEDDNLVQNVYVVGGFLES 69

Query: 81  LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            +    L     ++   V  + +  +   +     LA+        +       +L+ VL
Sbjct: 70  HEEFETLLEDAKIQPRIVTGEVLHAMADTQTPQGILAVVAMSQPQLSEVLDTKPKLIAVL 129

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD- 197
             + DP N G ILR+A A   D +I TK      +    +S  G+L H+P +        
Sbjct: 130 CRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTVGSLFHLPVLNNVEFDHL 189

Query: 198 -------------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
                                                ++ P  Q +       + G EG+
Sbjct: 190 IAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPGTEAPEGQPVLEAPTLWLFGNEGQ 249

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
           GL    ++ A     + + G+ ++LNV  A+ V LY +     
Sbjct: 250 GLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASARAQR 292


>gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 310

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 142/305 (46%), Gaps = 28/305 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRD-------------YKKMQSFNQKSRHTSQPE 47
           M  I K    +    +    A   ++                + +     + +R      
Sbjct: 1   MTRIVKPSKPRHDESRKQGRAAGAKDADTGPRDGAPKQEAWAFSRFGDSRKSARRPKTAG 60

Query: 48  NLF--------LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
             F        LYG+H+V AAL NP R+I     T+NA ARL    +           P 
Sbjct: 61  ESFAKLAAGETLYGLHSVEAALANPKRRIRHAWLTENAAARLAPLLD-ARKIAATLALPA 119

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
            +D + G  AVHQG  L+  PL  P LD            +++LD V DPHN+GA+LRSA
Sbjct: 120 DLDALTGPGAVHQGAVLQVEPLAQPGLDDFLDALGDAPATVVILDQVTDPHNVGAVLRSA 179

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF    +I   R+SP  +A LAKSASG LEH+P I + NL   L+K+    F  IG  S
Sbjct: 180 AAFGIGALIVQDRHSPPLTAALAKSASGGLEHVPVIEVVNLARVLEKLKERDFLCIGFDS 239

Query: 215 DSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  +  +  +   + +A + GAE KGLR   +E   ++A L  PG IK+LN+SNAAA+  
Sbjct: 240 EGAQRFDAALAGGRRVAFVFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVF 299

Query: 274 YITQN 278
           +    
Sbjct: 300 HARAQ 304


>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 11/269 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRK-IFQLLATKNALA 79
           +          +   +++    +       G   V  A    +     + +L AT  A  
Sbjct: 7   ISPRSPRVAAARRLAKRN-FRGKDRLFLAEGPQAVREAAGHRSGGEPTLTELFATVEAAE 65

Query: 80  RLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R                      I  I         + +                 L+ V
Sbjct: 66  RYADIVGAARAAGARVHLAGEDVITDISTTVTPQGLVGVCRFLDSPFDAVVRSRPTLVAV 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +V DP N G +LR A A   D ++ T       +    +++ G+  H+P      +  
Sbjct: 126 LANVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSHFHLPVAVGVPVER 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A+Q +   G + +      +  L+ E          A I G E  GL  +T+  A ++  
Sbjct: 186 AVQGLREAGVRILAADGAGEHDLDAELDAGTMGGPTAWIFGNEAWGLPEETRALADAVVR 245

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281
           + + G  ++LN++ AAAV LY +      
Sbjct: 246 VPIHGRAESLNLATAAAVCLYASARAQRT 274


>gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1]
          Length = 281

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 90/245 (36%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TKN   +           PV T     +
Sbjct: 37  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGHIPVYTAQFDVL 96

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 97  TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 156

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213
           ++ T   S        + + G +  IP+           +        M           
Sbjct: 157 VLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 216

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                      + +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 217 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 276

Query: 274 YITQN 278
           +    
Sbjct: 277 WQLGR 281


>gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 257

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 12/246 (4%)

Query: 41  RHTSQPENLFLYGV---HTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVK 94
           + +   EN +LY     HT  +AL N +R+  +LLAT+N       +           V+
Sbjct: 2   KSSKTNENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVR 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGA 149
            V  + ++ +V K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+
Sbjct: 62  LVENKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGS 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR++  F+ + ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+  
Sbjct: 122 ILRTSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWC 181

Query: 210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            G   ++K+ +++      K  +I G+E KG+R   +E    +  + +  +I +LNVSNA
Sbjct: 182 YGFDCNAKENIDEIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNA 241

Query: 269 AAVALY 274
           AA+ LY
Sbjct: 242 AAIGLY 247


>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 343

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 93/283 (32%), Gaps = 20/283 (7%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLA 73
           ++S      +++   KK+Q+   K +   +     + G   V   L  P     +  +  
Sbjct: 54  RESTLISSTKSN-TVKKIQALLNKRKKRLEQRETVVEGPRMVVDLLKQPQTHHLVRSIFI 112

Query: 74  TKNALARLDWDANLPHPFPVKT------VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +   +   +                 V P               LA+   P+ S    
Sbjct: 113 ASDKWEQYYPEILRAVGEDESRLPLTLPVTPPVFAACSDTITPQGILAITEIPIFSLERR 172

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185
               + L +VLD V+DP N+G +LRS+VA    G++         +    +SA G     
Sbjct: 173 DAPQNPLYLVLDGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQI 232

Query: 186 ---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                               +++   T+      +   E    +   ALI+G+EG GL  
Sbjct: 233 PVETFENWDECREKLVHLGCNNFWAATMLEDGVGRSHYEVNWLSGPNALIIGSEGNGLTK 292

Query: 243 KTQETATSM------AHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++            ++ M   I++LN +   +V L+     
Sbjct: 293 PIRDDLAVTSPRLKSVYVPMKAGIESLNAAVCGSVILFEYMRQ 335


>gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 303

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--------NPSRKIFQLLATKNALAR 80
             + +     +     +  +    G   V  AL              + ++ A++  L R
Sbjct: 19  RVRDVAKLAGRP-ARLKRGHFLAEGPQAVREALKLHQQRLASGGPGVVSEVFASEACLDR 77

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                 L      +      +  +         +A+     +          +L+ VL  
Sbjct: 78  FPEFEELSQGVNARLATDDVLAAMADTVNPQGIIAVCRFVDVPLEEVLDGGPRLIAVLCQ 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR+A +   D ++ T       +    +S +G+L H+P +  +++ +   
Sbjct: 138 VRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGADVGELAA 197

Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +                     ++         P          A + G E +GL  
Sbjct: 198 ACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYALEQPTAWLFGNEAQGLSE 257

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +    A     + + G  ++LN+  AA V LY +  
Sbjct: 258 EELALADHRVAVPVYGSAESLNLGTAATVCLYASAR 293


>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 246

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 16/253 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K++ S  QK ++  +       G+  V   LN+    +       ++ A+   + N  
Sbjct: 6   TIKRITSLGQK-KYRQRERVFVAEGIKVVHELLNSDLELVELYAEDVSSFAKALQNKNQA 64

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V+ V    + KI   +   +      A    P    +  S L ++LD V DP N+G
Sbjct: 65  ---IVEEVSTADLKKITFLKTTQK----AVATFRMPEAAQLDRSGLTLLLDDVRDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    ++ +       +  + ++  G+L  +  I        L++      +
Sbjct: 118 TIIRLCDWFGIKQLVCSIGTVDCYNPKVVQATMGSLTRVDVIY-----TNLEEYLENDSR 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
            +  +      +       +  +I+G E  G+  +T+   ++   +   G     ++LNV
Sbjct: 173 EVFGTFMDGTNIYNTSLPAEGVIIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNV 232

Query: 266 SNAAAVALYITQN 278
           + A A+ L   + 
Sbjct: 233 ATATAICLSEFKR 245


>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 269

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 98/280 (35%), Gaps = 25/280 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+   ++++ +++     K+                     +       G   +  A 
Sbjct: 5   KIITSLTNDRVKAIRALEMRKV-------------------RKETGLFVAEGASLLITAR 45

Query: 62  NNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +N       +  +   ++ + R      L     V  V    + K+  K+     L +  
Sbjct: 46  DNGFVPETLVYQSGTAESGITRGLVTHALNAGAEVLEVSEAVLGKLASKDNPQTVLGVFR 105

Query: 119 APL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                 P    V   +  + L+ + DP N+G I+R+A A  C G+I         S    
Sbjct: 106 QRFAEPPPAPKVNAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAV 165

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  G++       +     A   +       +  +  + +   + +  +   +++G EG
Sbjct: 166 RATMGSIF--AVPIVKMERSAFISLQRAWAGDVIGTHLTAREDFRSLYREPQLIVMGGEG 223

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +   + T +  + M G + +LN++ A  + LY  +
Sbjct: 224 PGLSSEAAASCTKLVKIPMAGKLDSLNLAVATGLMLYQIR 263


>gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
 gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
          Length = 279

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 78/270 (28%), Gaps = 17/270 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  + +         + L G H +   L    +    +          D 
Sbjct: 8   SRRNPLVKRLRMLSSRP-GRDAEGLILLEGTHLLQELLWIGGQPTELIATEAWFDRHADL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L      + V    +   +          +     ++   +  +     +VLD + D
Sbjct: 67  IQALDASVVWRRVTEAVLGASLSTVTP---DGVACLCPITLLPEPPKACDFWLVLDRIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKSASGALEHIPYI 190
           P N+G++LRSA+A     +       P              +                  
Sbjct: 124 PGNLGSLLRSALAADVQSVWMGSGVDPLGGKVLRASAGALLQLPHRRFGPEQEKAIDDLD 183

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +   +  A                    P  +       AL+LG EG GL P+ Q   T 
Sbjct: 184 QALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAGLHPRLQACCTH 243

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L     +++LNV+ AA   L   +   
Sbjct: 244 AVTLPHSSRVESLNVAAAAVPLLLERRRAR 273


>gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
 gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
          Length = 288

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 22/267 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     ++R               +  AL +    I  L         +   +  D 
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPISLLVEEPWIDGMSRTFVCIDE 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +     PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  HWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI             
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196

Query: 206 GFQTIGLSSDSKKP------------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                         +    D++ALI G EG GL   T   
Sbjct: 197 RELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M   + +LNV+ ++AVA Y
Sbjct: 257 ADLTVKIPMSHSVDSLNVAASSAVAFY 283


>gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51]
 gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           +  AL+     I  L+  K    +         
Sbjct: 18  FARLTETQLRNRLEPEIGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQAHGIITRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P L    +A   +  + VL+ + D  N+GA
Sbjct: 78  DIPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--------IRISNLTDALQK 201
           I RSA A   D ++ T            + + G +  +P+                +L+K
Sbjct: 138 IFRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRK 197

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +           +       Q +  +K+A++LG+EG GL P T       A + M   + 
Sbjct: 198 LGFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVD 257

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ A+AVA +  +
Sbjct: 258 SLNVAAASAVAFWQLR 273


>gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017]
          Length = 279

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 77/252 (30%), Gaps = 5/252 (1%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLP 88
           +++      R+       F+ GV       ++       + + K     LAR        
Sbjct: 20  RIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTAPLARKLVRRFRR 79

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                 +V P+    I        G+                +  L ++LD V    N G
Sbjct: 80  SGVETISVSPEQFRGISQTHR-ASGIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNFG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R+  A            +    A     AS           ++     Q +      
Sbjct: 139 TLIRTLDAGGG-TGFILLNQAVDPYAPSTVRASMGSVFQQQFIRTHDQALSQWLQQHQGY 197

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG S D ++            L LG E  GL PK +    ++  + M G + +LNV+ A
Sbjct: 198 VIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVA 257

Query: 269 AAVALYITQNHF 280
            ++ +Y      
Sbjct: 258 GSLFIYEVLRSR 269


>gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
 gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
          Length = 289

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      ++   +           +S AL+     +  L+  K  L   +  A L  
Sbjct: 31  YARLTEAQLLNKDHPEDGLFIAESPKVISRALDGGYELVSVLVEKKQVLEDAETIAVLGK 90

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV T   + + K+ G +     L       L    +       + VL++V +P N+
Sbjct: 91  CGNVPVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNV 150

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D +I T   S       ++ + G +  IP+  + N     ++      
Sbjct: 151 GAIFRSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILR 210

Query: 208 QTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +    ++              + +K DK+A+ILG EG GL P+T         + M   +
Sbjct: 211 ELGFKTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGV 270

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LNV+ A+AVA +       K
Sbjct: 271 DSLNVAAASAVAFW----QLGK 288


>gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
 gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
          Length = 270

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 10/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
                   ++  N+  +  S    +   G H V + L      +  ++   + L     +
Sbjct: 8   PLDPRLDDVRDLNKSDK--SGEGLVIAEG-HLVVSRLAESRFPLRCIVGFGSKLDAYVEE 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              P   P+  V  +T+ ++ G +     +A           + +R ++ ++VL+ V D 
Sbjct: 65  YGDP-GCPMYEVTRETLAQVAGFDMHRGLVAAADRAAEPTLEEILRTAKTVVVLEGVGDH 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI R+A     D ++     +        + + G +  +P+  +       Q+   
Sbjct: 124 ENIGAIFRNAAGMDVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLDGGYTTWQRSLQ 183

Query: 205 WGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                           E            K+AL++GAEG GL     +     A + M  
Sbjct: 184 VLRDANFRLVSLTPHPEAVHLAQALHGAEKVALLVGAEGPGLTEHAMKATDVRARIPMAP 243

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LNV+ +AA+A Y  Q    
Sbjct: 244 GTDSLNVATSAAIAFYERQRSRI 266


>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 274

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 106/267 (39%), Gaps = 18/267 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
             K +++   +    S+     + G   V  A+   + ++  L  T +A AR        
Sbjct: 11  RVKAVRALAGRP-ARSRSGRFLVEGPQAVREAVREQAVRVHDLYVTDDAAARYREIVADA 69

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           +     V+T   + +D +         + +     ++         +L+ VL HV DP N
Sbjct: 70  VARGVVVRTGSAEVLDAMSADA--QGLVVVADLVAVALEDVVAPGPRLVAVLAHVRDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GA++R+A A   DG++ T+      +  + +S +G+L H+P    + L  A+  + + G
Sbjct: 128 AGAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSLFHLPVATGAELPAAVAALRARG 187

Query: 207 FQTIGLSSDSKKPLEQE------------IKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +      +  ++                    A + G E  GLR + +  A ++  +
Sbjct: 188 VTVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWVFGNEAWGLRDEDRALADAVVRV 247

Query: 255 HMPGIIKALNVSNAAAVALYITQN-HF 280
            + G  ++LN++ AA V LY +     
Sbjct: 248 PIRGRAESLNLATAATVCLYASARAQR 274


>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 253

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 91/275 (33%), Gaps = 36/275 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ KI  +K                        +   +     L G   + A 
Sbjct: 1   MRFIESPKNPKIKEIKK------------------LLSSKKARDEKGQFVLEGPKAIEAY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +  + +  L       ++   D    +   V    P  ++ +         +A   A 
Sbjct: 43  VQSGGKVLELLY------SKDAKDLPKVNAV-VTQCAPGVMEAVSDVAGDQGVIA--IAQ 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T   V   + ++VL+ + DP N+G ILR+A AF    I+TT         V+   A
Sbjct: 94  KRDWTPQQVLKRKRIVVLEQLQDPGNLGTILRTAAAFDYGVILTTGSADVYNPKVVRALA 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                         +     +          +++               A++LG EG+GL
Sbjct: 154 GN-------FLAPFVYVTGGEALELCKNLFVVTTYKSSEKPDFKWRQPFAIVLGNEGQGL 206

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               +  A + A +     +++LNVS  +A+ ++ 
Sbjct: 207 TESWRRIAKANAWIP--SKVESLNVSVTSAILMWE 239


>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
 gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
          Length = 261

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 11/256 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ YK  +S   K ++  + +   L G   +S AL N +  I  ++ T+  +   ++
Sbjct: 17  SKDNKKYKLFKSLYLK-KNRDKYKLFLLEGKKLLSEAL-NENLDIENIICTEKFVENFEF 74

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             N      V  +  +    +          +     +++   +   +S+ ++ L++V+D
Sbjct: 75  KENFLD--KVIILSEKLFKNL-----TELTNSEGVITIVNYIEEKKISSKNIICLENVSD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R+A AF  + I+T       +       A+        I    +    +   
Sbjct: 128 PGNFGTIIRTANAFGINDILTIN--CVDKYNSKVLRATMGAIFRTNIIDCKIEKIKELQS 185

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                     S + K LE+   + K  +++G E  G+  +  + + +   + M   +++L
Sbjct: 186 GGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANGISAEMLKISNNHLKIDMDNSMESL 245

Query: 264 NVSNAAAVALYITQNH 279
           NVS AAA+ +Y    +
Sbjct: 246 NVSIAAAIIMYKIFKN 261


>gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 262

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 3/230 (1%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    + P ++ L+G H V AAL NP+R   +L AT+  +A LD +  LP  FPV+    
Sbjct: 21  RGSGRATPGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLDGE--LPPDFPVEYADV 78

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             + ++V ++A HQGL LE   L    +D V    + +++LD V DPHN+GAILRSA AF
Sbjct: 79  TDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAILRSAAAF 138

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+T  R++P ES V+AKSASGALE +P++R+ NL  AL  +   G+  IGL+ +++
Sbjct: 139 DAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRIGLTGNTE 198

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             L + +    +AL+LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 199 ATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248


>gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 259

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 97/254 (38%), Gaps = 8/254 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++   +KS      +  F+ G+     A+      I ++   K    + +   +  
Sbjct: 11  KIKNLRKIYKKSSR----KIFFVEGIKEFEMAIKGNFFPI-EIFICKKIFHKYNLIKSFN 65

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147
           H   V  +  +   K+  +E     +AL     L    +     +  +++LD +  P N+
Sbjct: 66  H--IVFFISIKAFKKLAYRENSGGIIALFKRKNLERLENIKIYKNPFILILDGIEKPGNL 123

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G++LR A A     II     +   +  + + + G++     +     +           
Sbjct: 124 GSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKILIEKKKSIISWLQKKKIE 183

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +    L +   + ++A++LG+E KG+ P     A  +  + M G + +LNVSN
Sbjct: 184 IVVTGFHEKAIQLYRTKFSSRLAIVLGSENKGVSPIWLNIAHKIVTIPMFGDMDSLNVSN 243

Query: 268 AAAVALYITQNHFA 281
           A ++ +Y       
Sbjct: 244 AMSIMIYEVLRQRN 257


>gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus
           VCS1703A]
          Length = 242

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 8/239 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
            +++ G+H +  ALN+ +  + +L  ++   ++               + TVP   ID  
Sbjct: 3   TIWIGGIHALRQALNDGN--LLRLEVSEGKTSKNLASLVADAKAAQIEIITVPRHYIDHR 60

Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              V  + +     L           +      ++VLD + DPHN+GA LR+A+A   D 
Sbjct: 61  LPDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGVDA 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++     +   + V+ K A GA E +   R++NL   ++ M   G   +G + +++K L 
Sbjct: 121 VVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKSLF 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  + +I+G E KG+    ++T   +A + M   +++LNVS A  + L+  +   
Sbjct: 181 DLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQR 239


>gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 231

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E L++ G ++V  AL      I  +        +L           ++            
Sbjct: 2   EKLYVCGRNSVEDALKVN-LPIETIYVNS---FQLAQKLKQITKAKIEMKDNSFFANY-- 55

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG+           L+ ++      ++VLDH+ DPHN+GAI+R+A       +I 
Sbjct: 56  RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 115

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +K  S + ++ + K +SG   ++  I++++++  L K+  W +     +  ++ + + Q 
Sbjct: 116 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             N    L++G EG G+   T   A  + ++   G ++++NVS A  + LY    
Sbjct: 176 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 230


>gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 269

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 2/234 (0%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
                     +  AL+     I  LL                   P+     Q + +I G
Sbjct: 36  GIFIAESPKVIGRALDAGYEPISLLLEKGQTEKEAAEIIERCENAPIYIAESQVLTQITG 95

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  L      +L      V+++  + VL++V +P N+GAI+R+A A   D ++ T 
Sbjct: 96  FHLTRGVLCAMRRKVLPSVESLVKDAHRIAVLENVTNPTNLGAIVRNAAALGLDAVLFTH 155

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +       A+ + G +  IP+  +   ++                 +  K +      
Sbjct: 156 GSTDPLYRRAARVSMGTVFQIPWTFLPEGSEIDTIKGLGFKTVAMALRNDTKDISDPELK 215

Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             DK+A+ LGAEG GL P+T         + M   + +LNV+  +AVA +    
Sbjct: 216 NADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAFWELVK 269


>gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
 gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
          Length = 258

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +YG      AL +   ++++L  +++     +              V     + +  I  
Sbjct: 20  IYGRKPCLEALQDKHVQVYRLHLSESNKPAPILDEIIALAKARGAEVLYHDKRQLSHISK 79

Query: 107 KEAVHQGLALE-----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                QG+A++              D        + LD V +P N+G I+RS  A     
Sbjct: 80  NSKQDQGIAMDLVLAGFTEHEDYLADFTPGEHTFIALDSVTNPQNLGMIIRSVCASPATA 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  ++      A++ K+++G L   P IR   L   LQ   + G   +GL+ D+K  LE
Sbjct: 140 LILPRKGCAKLDALVIKASAGTLFKAPVIRCDTLMSCLQAFKTKGACVVGLALDAKTSLE 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            E        +LG E  G+ P           + M   +++LNV+  A++  +      
Sbjct: 200 NESSAGTRIYVLGNETDGISPDVSRLCDEQLKIPMRNGVESLNVAVTASLIAFRSLLRQ 258


>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
          Length = 413

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 20/289 (6%)

Query: 7   KKSEKIFSLKDSHYAKLR----RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSA 59
           + S+K    + S  A++     R +   ++ +   Q S      EN      +G H   A
Sbjct: 98  RYSQKTDKPRRSLNARISPREIRRNDLNREEEVLVQNSGEIRNNENHLDDIFWGRHATQA 157

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLA 115
            L +  R + ++  T    +   +   L         V+ V    +  I     VHQG+A
Sbjct: 158 ILESG-RPVHRIWCTAELRSSPKFLQLLKDSKSLGVLVEEVSWARLGYIT-HGGVHQGIA 215

Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L+TA   +  L  + +         +L+ LD + DPHN+GAI+RSA A    G++  +R 
Sbjct: 216 LQTAASKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRR 275

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  +AK A+GALEH P  R+ NL  +L ++   G+  IGL+ D    L +      
Sbjct: 276 SAGLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFVLNEVDLLGP 335

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L++G+E KGL   T+     +  + + G+  +LN S AA+++LY   
Sbjct: 336 LVLVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIA 384


>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 251

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 27/276 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I    ++ I  +K                     Q+ ++  +    F  G+  +  +
Sbjct: 1   MKYIQSIDNKYIKLVKSL-------------------QQGKYRQKNSMFFDEGIKNIELS 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +  +  F L+        L              V  + I   +      QG+      
Sbjct: 42  LKSNYKMNFVLIREDFKDTSLIKSLEEKLGEDKILVLNEKIFTSISDTVNSQGIIAVYDM 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                + + +    +++LD + DP NIG I+R+A +FS + I  +K  +   S       
Sbjct: 102 KKDEDIKSDK----ILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFS----PKV 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
             A     Y       D + K+ S G++      ++    +    ++K+ALILG E  G+
Sbjct: 154 VRATMGSIYFVNFVKLDDISKLKSEGYKIYASCLENAISSKSAFTDEKMALILGNESVGI 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +     + M G  ++LNV+ A A+ +Y  
Sbjct: 214 SEDLINQSDKKIKIDMTGNAQSLNVATAGAILIYEM 249


>gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
          Length = 247

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 9/245 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101
           + E+  L G H VS+ +   S  I  +      ++   R   +        +       +
Sbjct: 2   KKEDTVLAGFHAVSSRMKRDSSSIRIVYYDPKRRDQRMRRMIEEIEKAGIRLMQADNNRL 61

Query: 102 DKIVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           D     E  HQG       ++        +D +  + LL++LD V DP N GA LR A A
Sbjct: 62  DGFS-HEVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +IT K  S + +A   K+++GA E +P +R++NL  ++ ++   G   IG + ++
Sbjct: 121 AGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K + +  +      +LGAEG GLR  T+   + +A + M G +++LNVS AA + L+ T
Sbjct: 181 QKTIYEFDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240

Query: 277 QNHFA 281
                
Sbjct: 241 VRQRT 245


>gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 241

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 93/252 (36%), Gaps = 19/252 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +++  QK ++ ++ +   + G+ TV   L N   K + +  T NA           
Sbjct: 6   QIKFIKNLQQK-KYRTENKLFVVEGIKTVKE-LVNAKVKPYAIYTTSNA-------VLED 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           + F  + +    + KI   +  +  LA+   P     ++       L+ +D V DP N+G
Sbjct: 57  NAFKCELISETDLKKISALKTPNNILAVFYQPKTKEIIEDN----WLVAVDDVRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    +  +K+     +    ++  G+L  +  +         Q        
Sbjct: 113 TIIRLCDWFGVANLFCSKQTVDCYNPKTIQATMGSLARVNIVYGDLEAFLKQTNLPVYGA 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVS 266
            +   +  K+            L++G E  G+    +E  T    +   G    ++LNV+
Sbjct: 173 FMDGKNVYKEDFTA----QSGVLVMGNEANGVSKTVEELITKKISIPQFGNKTTESLNVA 228

Query: 267 NAAAVALYITQN 278
            A A+ L   + 
Sbjct: 229 TATAILLNEIRR 240


>gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni]
 gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni]
          Length = 409

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 88/293 (30%), Gaps = 27/293 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           D  + +L         +    +  +   +   + + G   +  AL+   +    + + K 
Sbjct: 116 DLEFVRLNLQDPLLSTLMITVRSRKRRDKNRQIIIEGRRLIREALSCGLKMQTLIFSQKE 175

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA L  +  L        +  VP   +            + +   P       A     
Sbjct: 176 QLALLREEVALAQQKTQTKIYKVPQHDLKTWSTLVTPPGVMGIFERPSSRGLETAKTTPT 235

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                + +V D++ +P+N+G+I+R+  A  C  ++          +   +   G    +P
Sbjct: 236 SSSLPITVVCDNIREPNNLGSIIRTCAALPCHQVVVIHGSCDPWESKALRGGCGGQFRLP 295

Query: 189 YIRISNL------------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
                               +    +     + +   +  +        N    LI+G E
Sbjct: 296 IRDDIAWDDLALTIPPETADNCHVYIAENNLEKLAEHTAIEYADMPAAPNGHQILIIGGE 355

Query: 237 GKGLRPKTQETAT-------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             G+  +                ++ +     +LNV++A  + L+  +    +
Sbjct: 356 SHGVSSEAYSFMNLVGQNKGKCVYIPLAEGTDSLNVASALTLLLFELRRKLKQ 408


>gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 105/252 (41%), Gaps = 16/252 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            H   K++ +  ++ +   Q  ++ + G   V        R +  LL T         + 
Sbjct: 8   QHPLIKRLTALRKERKMRQQEGSVVIEGKKLVRE----NVRLVRTLLTTS-----PSTEF 58

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +LP    V  V P+ I KI G ++    LA        P+       Q L+VL+++NDP 
Sbjct: 59  SLPESAEVYAVSPEMIQKISGVKSPEGVLAEV----KMPSFKLPARLQRLLVLENLNDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+++AF  DG+          +    +++ GA+  +P +     +     +   
Sbjct: 115 NLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIVVGDLESLKTLLID-- 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              ++ ++    K +    K  K+AL+LG+E  G   +          + +   + +LNV
Sbjct: 173 HQMSVFIADLEGKKIGAIPKVSKMALVLGSEAHGPSKEVISIG-ERLTIPISSGLDSLNV 231

Query: 266 SNAAAVALYITQ 277
           + A  + L+  Q
Sbjct: 232 AVAGGILLHHFQ 243


>gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 261

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 8/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++    +++   Q      +   ++L G H   A ++        +++    +     
Sbjct: 10  SRDNALLVRLRKLAQDPGAYRKLGAVWLEGDHLCEACVSRGVVPAQAVVSEAGWVDPRLQ 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                 P  +  V      ++ G E+  +   +      +  + A   +   +VLD + D
Sbjct: 70  RLARAAP-RIAVVADALFAQLSGLESPARLGFVLDHATEATAVQAGVAT---VVLDRLQD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G++LRSA A     ++  K  +   S+ + ++  GA   +  +  + + D      
Sbjct: 126 AGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAEVGDLDALGV 185

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                +        +             +LG EG+G+        +    +  PG  ++L
Sbjct: 186 PLLATSSHAGLALAEGR----LPSPCGWVLGHEGQGVGKALLARCSETRRIPQPGGQESL 241

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ LY +    
Sbjct: 242 NVAAAAAICLYESLRQR 258


>gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 252

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 116/245 (47%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  F+YG +    AL   +++I ++      ++ +              ++  P   +D+
Sbjct: 9   QTEFVYGHYASVEALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKKGLVIQQAPKSKLDE 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+ L  A     T+D               ++LD + DPHN+G+ILR+A A
Sbjct: 68  LTD-GGNHQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G    G     
Sbjct: 127 AGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDMAG 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + K    ALI+G EGKG+ P  ++   SM  + M G +++LN S AA++ +Y  
Sbjct: 187 EDYRRWDAK-GATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMYQG 245

Query: 277 QNHFA 281
            +   
Sbjct: 246 FSSRN 250


>gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 267

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 4/254 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY+ ++    +    S        G   V  A+          L     L  L  D   
Sbjct: 16  ADYRDLRDVELRKSLESSEGLFLAEGEKVVRRAVTGGFEP-RSFLMAPKWLDGLA-DVLE 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P   +  +  +++ G       LA      L      +  ++ ++VL+ + D  N+
Sbjct: 74  STDAPCYVMSEKAAEEVTGFHVHRGALASLKRRPLPSVESVLEGARSVLVLEDIVDHTNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSW 205
           GAI RS  A   D ++   R +        K A GA+  +P+ R               +
Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEALPSLSAAGF 193

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               + L+ D+    +     DK+AL+LG+EG GL P+ Q+ A   A + M   I +LNV
Sbjct: 194 TTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMSAGIDSLNV 253

Query: 266 SNAAAVALYITQNH 279
           + A AVA Y+T   
Sbjct: 254 AAATAVACYVTARR 267


>gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 239

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YGV+ V+ AL      I ++   KN   R    +        V     Q + ++  K 
Sbjct: 2   VIYGVNPVAEALRAGY-PIMKIFVEKNFKDREKVLETARQAGIKVVKTTKQKLTELA-KT 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             HQG+    +P+     + +    +     L+ LD + DPHN+GAI RSA AF   GI+
Sbjct: 60  TKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTGIV 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  S + +  +AK+++GAL ++P+  +++      +        +       KPL + 
Sbjct: 120 IPRDRSVTVTETVAKTSTGALFYVPFAVVNSF-VTALREFKEMGGWLVGLEAGGKPLSKF 178

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNHFA 281
                + L+ G+EG+GL   T +    +  + M G + +LNVSNA A+ LY    Q +  
Sbjct: 179 EFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYIN 238


>gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 229

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++  +
Sbjct: 1   YYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLLENQ 57

Query: 109 AVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                 A            +D       + +LD + D  NIGAI+RSA AF  + II  +
Sbjct: 58  IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 117

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      ++ +
Sbjct: 118 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 177

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225


>gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 459

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 26/287 (9%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70
           SH   +   ++   K        S +     +  + G   +            R +    
Sbjct: 170 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 229

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
           LL    A      D        V ++  + +  +   E+V     +          D   
Sbjct: 230 LLILDKAEIPEGLDVFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDDTY 289

Query: 128 ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                   ++   ++VLD + DP N+G +LRSA+AF   G+          +    +++ 
Sbjct: 290 EKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASR 349

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232
           GA   +P +  S +     K         G    ++K       +           + L+
Sbjct: 350 GASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLV 409

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           LG+EG GL  K+ +    +  + M G  ++LNVS A  + LY+ Q  
Sbjct: 410 LGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 455


>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
 gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
          Length = 247

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 15/255 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ YK ++ F QK ++  +     + G      A+   +     +        + + 
Sbjct: 8   SKDNKYYKYLKKFLQK-KYRYEENLFLVEGPIVFKEAIKYMTPSYIAI-----RDDKEEQ 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             +L         P    +KI   ++    ++            + +     + LD ++D
Sbjct: 62  YKDLLGDRDYFIFPSHLFNKISDSQSPQGIISYFPMVHKKFQEKSGK----FLYLDKISD 117

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G I+R+A AF+  G+I ++      +    ++   ++  +P   +           
Sbjct: 118 AGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKEDELIKNNFK 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                        +        +  + L++G E  G+  K  E A     + +   + +L
Sbjct: 178 IIVSALEDSKPIKECD-----LSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSL 232

Query: 264 NVSNAAAVALYITQN 278
           N   AA +  Y    
Sbjct: 233 NAGVAAGIFAYEMSK 247


>gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 240

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+                  + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIFETHKKLIGTRA---YEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RSA A
Sbjct: 59  DILSKLLENQIHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 372

 Score =  106 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 122/353 (34%), Gaps = 81/353 (22%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQ-------------------SFNQKS------ 40
           KK ++K  +++++H+    +     K+ +                   S  ++S      
Sbjct: 17  KKPTKKNKNVQNAHFTSNEKGAPYKKRTRVSGDSGTRARSSSAHARSFSSQKRSSGASSA 76

Query: 41  --RHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPH 89
             R   +       + G      AL      + +LL  +N       A            
Sbjct: 77  YMRPRRERGVRAPMIEGRRACFEALEA-HLPLKKLLVQENMNAALQTADVERLITCARER 135

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--------------------- 128
               + V    +D +    A HQG+  E AP                             
Sbjct: 136 GIACEYVKKSAMDSLSSHGA-HQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADAS 194

Query: 129 ----------------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                                  + + L+++LDHV D  N GAI+RSA       +I   
Sbjct: 195 AADASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIAN 254

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               S      K+++GA+ H+P +++ NL  A+ ++   GF  IG S  +++ +      
Sbjct: 255 ARCASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFT 314

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K+ LI+G+E  G+    Q+    +  L   G I++LNV+ AA V  Y     
Sbjct: 315 GKVCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 367


>gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis]
 gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis]
          Length = 412

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 90/289 (31%), Gaps = 24/289 (8%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   + + + + G   +  AL +  + +    + K+
Sbjct: 119 NLEFLRLTLQDPLMSTLLTEVRSRKRHDKNKQIIVEGRRLIQEALQSGLKMLSLFFSQKD 178

Query: 77  ALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA L              +  VP   +            LA+   P             
Sbjct: 179 QLALLRDQVAQAQQEQNTKIYKVPQHDLKTWSSLVTPPGLLAIFERPPPQGLQQRQDTDP 238

Query: 134 L--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           L   +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G    +P   
Sbjct: 239 LPITVVCDNIREPNNLGSIIRTCAAVPCSQVVVTHGCCDPWESKALRGGCGGQFRLPIHD 298

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------------ALILGAEGK 238
                     + +    T  +      P +   +  +               LI+G E  
Sbjct: 299 DVTWEQLPLHIPAEVADTCHVFIAENNPSKTAKRAGRTVDYAELDQTGAHNVLIIGGESH 358

Query: 239 GLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+                  ++ +   I +LNV++A  + L+  +    
Sbjct: 359 GVSDDAYSFMKLVGDRGKCVYIPLAAGIDSLNVASALTLILFELRKKLI 407


>gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355]
          Length = 188

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 82/158 (51%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L        L+VLD V DPHN+GA LRSA A     +I  K  S   +A   K ASGA
Sbjct: 30  PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAKKVASGA 89

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            E++P IR++NL   L+ +  +    +G + ++   + Q      +AL++GAEG+G+R  
Sbjct: 90  AENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMALVMGAEGEGMRRL 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           T+E    +  + M G + +LNVS A  V L+       
Sbjct: 150 TREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRN 187


>gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
 gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    + + K+
Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170

Query: 77  ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA L  +           +  VP   +            LA+   P        +   +
Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T+       +   +   G   
Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P     +             D      +   +    +  +    +         LI+G
Sbjct: 291 RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGSHNLLIIG 350

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+  +               ++ +   I +LNV++A  + L+  +   ++
Sbjct: 351 GESHGVSEEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFELRRKLSQ 404


>gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta]
 gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta]
          Length = 405

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 93/292 (31%), Gaps = 28/292 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           + ++ +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 108 NLNFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKD 167

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +  +        +  VP   +            + +   P        +   Q
Sbjct: 168 QLALVKEEVGMAQLGTGTKIYKVPQHDLKTWSSLVTPPGLMGIFDRPSDKGLEKNLAEQQ 227

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P                   D      +   Q    ++ +    + +       LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQSLGAHNLLIIG 347

Query: 235 AEGKGLRPKTQETATS------MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +               ++ +   I +LNV++A  + L+  +   
Sbjct: 348 GESHGVSEEAYRFLNMVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKL 399


>gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 244

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E L++ G ++V  AL      I  +        +L           ++            
Sbjct: 15  EKLYVCGRNSVEDALKVN-LPIETIYVNS---FQLAQKLKQITKAKIEMKDNSFFANY-- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG+           L+ ++      ++VLDH+ DPHN+GAI+R+A       +I 
Sbjct: 69  RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 128

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +K  S + ++ + K +SG   ++  I++++++  L K+  W +     +  ++ + + Q 
Sbjct: 129 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 188

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             N    L++G EG G+   T   A  + ++   G ++++NVS A  + LY    
Sbjct: 189 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 243


>gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
 gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
          Length = 256

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 9/237 (3%)

Query: 51  LYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
           +YG + V A L +     K+  L  +     +LD    L       V+      + +I  
Sbjct: 20  VYGRNPVEACLQDAQLRPKVLHLADSNQKSDKLDRLIALAEKRGCDVRFHDRDALARISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +   QG+AL+        L          +  L++LD V +P N+G ILRS  A    G
Sbjct: 80  NKKQDQGVALDVECQAFNDLSVFLQSTSEETCRLILLDRVTNPQNLGMILRSTTAAGITG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R       ++AK+++G L H P +R ++ ++AL  +   GF    LSS ++    
Sbjct: 140 VIVPERGCAPLGPLVAKASAGTLFHAPVLRCTSSSEALDALLGLGFTCYTLSSHTESNFF 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +E    K   +LG E +G+ P       +   + M   +++LNV+  AA+  Y    
Sbjct: 200 EEHIPAKAVFVLGNESEGVAPDIASRCQAKVRIPMHNGVESLNVAITAALIAYYLDR 256


>gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 270

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 10/262 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            K   ++     + S+ +K     +   L +YG + V  AL +PS +I +L  +++    
Sbjct: 3   EKNSTHNAQRTTLVSYEEKKSFYEK--VLTIYGRNPVLEALEDPSLQIHRLHLSESNKPS 60

Query: 81  LDWD----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQ 133
              D            ++T   + + +I       QG+AL+       T D         
Sbjct: 61  KQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLNEHKRF 120

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEHIPYIRI 192
            L+ LD V +P N+G I+RS  A   DGI+ + + +    +    K+++G L  IP IR 
Sbjct: 121 RLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKIPIIRA 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L   L+     G +   L S +     +     +   ILG E +G+ P+    +    
Sbjct: 181 DSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAALSDERI 240

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M   +++LNV+  A++  +
Sbjct: 241 AIPMNRGVESLNVAVTASLLAF 262


>gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis]
 gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis]
          Length = 405

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    + + K+
Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170

Query: 77  ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA L  +           +  VP   +            LA+   P        +   +
Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L        +V D++ +P+N+G+I+R+  A  C  ++ T+       +   +   G   
Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290

Query: 186 HIPYIRISNLT-----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +P     +             D      +   +    +  +    +         LI+G
Sbjct: 291 RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGTHNLLIIG 350

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+  +               ++ +   I +LNV++A  + L+  +   ++
Sbjct: 351 GESHGVSEEAYSFMNLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKLSQ 404


>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 241

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 21/254 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++  Q +  F  GV  V   LN+    +  L  TK     +  +    
Sbjct: 6   QIKLITSLQQK-KYRKQEQLFFAEGVKVVQELLNSNFE-LQDLFTTKEDFPSVYKN---- 59

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V    + KI      +  LA+   P     +++     L++ LD V DP N+G
Sbjct: 60  ---KVHAVSDLELKKISALTTPNTCLAVFKMPKAKNFVESG----LILALDDVRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F  + +  ++      +  + ++  G++  +  +  S      +   +    
Sbjct: 113 TIIRLCDWFGIETLFCSEESVDIYNPKVVQATMGSISRVNVVYGSL-----EAFLTKTKL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNV 265
            I  +      + QE    +  +++G E  G+ P  ++  +    +   G I   ++LNV
Sbjct: 168 PIFGTFMDGSNIYQEALPKEGVIVMGNEANGISPSVEKLVSERIAIPRFGNIQLTESLNV 227

Query: 266 SNAAAVALYITQNH 279
           + A A+ L   + +
Sbjct: 228 ATATAIILSEFKRN 241


>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
 gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
          Length = 257

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 10/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K   S     +  +     F  G         +         AT+ ALA+   
Sbjct: 8   SRENPKIKYACSVRDSEKQRAADGLFFAEGPKLCLELAKSC--TPRTAYATEAALAKTPA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A+L +P P   V P   +K+ G ++      L   P   P L  + +++ ++ L+ V D
Sbjct: 66  LASL-NPMP---VAPHVAEKLAGTKSSQGVFVLFETPQTDPAL--LDSARRILALEGVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA AF  D ++     +   S    +S+ GA   +P +   NL   L ++ 
Sbjct: 120 PGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVHTENLPGTLHRLR 179

Query: 204 SWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             G   +  +    +PL++E       + +++G+EG+GL  +T +   +   + M   ++
Sbjct: 180 ERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACDAAVRIPMTDRVE 239

Query: 262 ALNVSNAAAVALYITQ 277
           +LN   A +V L+  +
Sbjct: 240 SLNAGVAGSVLLWHFR 255


>gi|325282012|ref|YP_004254554.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324313821|gb|ADY34374.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 253

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 11/256 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +   K+    +K +   +     + G   V   L++P  KI  L+A  +    L+ +   
Sbjct: 4   KQVTKIVQNLEKKKFREKYNLFKIEGEKLVGELLHSP-LKIHSLIAFPSW---LEQNKKA 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +     + +  I   +++ + +AL   P+     + V    L +VL+ + DP N+
Sbjct: 60  LSNVNIIEADEREMHGISNFQSLPEVIALAEIPVHIYRKEEV-LDSLSLVLNGIQDPGNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR A  F    I      +   +    +++ GA+  +            +       
Sbjct: 119 GTILRVADWFGIGNIFCDADCAGVYNPKCVQASMGAIFRVKTFYTDLPVLLSELKQEGLP 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKAL 263
                     K +     + +  +++G EGKG+  + +        +          ++L
Sbjct: 179 VFGTFLD--GKNIYTTALSTRGLIVMGNEGKGISAEIEALTGQKLTIPSFARNSESTESL 236

Query: 264 NVSNAAAVALYITQNH 279
           NV  A  + L   +  
Sbjct: 237 NVGVATGIILSEFKRR 252


>gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 275

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 17/266 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY +++    +    ++       G   +  A+    R +  +L T   L RL      
Sbjct: 14  ADYVRLRDSELRKSLEAERGLFIAEGEKVIRRAVATGHR-LRSVLTTAKWLDRLADVI-- 70

Query: 88  PHPFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               P   V  + +  I G +       AV +      A LL+           +++L+ 
Sbjct: 71  -GDVPTYLVSDEVMRGIAGFQVHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILED 129

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GAI R A A   D II + R +        K + GA+  IPY R+ +    L 
Sbjct: 130 LVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLG 189

Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG- 258
           ++ + GF+ + L+ D       +    +++AL+LG+EG GL  +  + A     + M   
Sbjct: 190 EVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSPA 249

Query: 259 ----IIKALNVSNAAAVALYITQNHF 280
                + +LNV  AAA+A +      
Sbjct: 250 AMARGVDSLNVVAAAAIACHGLMRGR 275


>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
          Length = 254

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 128/216 (59%), Positives = 162/216 (75%), Gaps = 1/216 (0%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+HTV AAL+NP RK  +L  T+NALARL+ D         + V P  IDK++G EA+H
Sbjct: 25  YGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIH 83

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ LET PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+
Sbjct: 84  QGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPT 143

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES VLAKSASGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL
Sbjct: 144 ESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVAL 203

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +LG+EGKGLR KT+ET T++A L MPG IK+LNVSN
Sbjct: 204 VLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239


>gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 252

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 17/256 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S  +K +  S+       G   VS  L  P  K   L+A    L+ L+        
Sbjct: 9   KYIRSLKEK-KFRSEYGTFIAEGNKLVSDLL--PYMKCQLLVALPGFLSELNITDIE--- 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  V    + +    +   Q LA               N+QL++ LD + DP N+G I
Sbjct: 63  -EVIEVNESQLAQASFLQNPQQVLA--VFYQPKHPEAIDINNQLVLALDGIQDPGNLGTI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I  T   +   +  + ++  GAL  +    +         + +     +
Sbjct: 120 VRLADWYGIKHIFCTHDTADIYNPKVVQATMGALARVTIHHVDLA----GFLDNNKHIPV 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVS 266
             +    K + ++       +++G EG G+RP+ ++  T   ++          ++LNV+
Sbjct: 176 YGTLLDGKNMYEQDITPHGIIVMGNEGNGIRPEIEKRITKKLYIPNYPEGNTTSESLNVA 235

Query: 267 NAAAVALYITQNHFAK 282
            A A+     +    K
Sbjct: 236 IATAIVCAEFRRRSNK 251


>gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
 gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
          Length = 292

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y ++     +S    Q           +  AL    + +   L ++     L      
Sbjct: 38  RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALAAGHQPV-SFLMSEKWADDLADVLRA 96

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P      + ++++ G       LA    P   P    ++ +  + +L+ + D  N+
Sbjct: 97  HPDTPAYVGSEEQLEQVTGFHLHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNV 156

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A + D ++ T R +        + + G +  +P+ R+ +    LQ +H  GF
Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216

Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ +            +++K+ALILG EG GL P+T         + M   + +LN
Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 277 VAAASAVAFWETR 289


>gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 240

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 89/252 (35%), Gaps = 20/252 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  QK ++ +Q     + G+ +V   LN+            + +          
Sbjct: 6   QIKFIKSLQQK-KYRNQHRMFAVEGIKSVKELLNSNIEAHKVYCVNPSLIENESGL---- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V+ +      KI   +  +  L +   P           +  L+ LD V DP N+G
Sbjct: 61  ----VELISAGDFKKISTLKNPNGVLGVFIIPKPKVV----DQNDWLLALDDVRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    ++ ++      +  + +++ G++  +  +                  
Sbjct: 113 TIIRLCDWFGIKNLLCSENTVDCFNPKVLQASMGSITRVNVVYTDL-----VTFLEQTKL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVS 266
            +  +  +   +  +    K  L++G EG G+    +    S   +   G    ++LNV+
Sbjct: 168 PVYGTFMNAASVYNKALPKKGILVMGNEGNGISSDIENLVNSKISIPQFGDKATESLNVA 227

Query: 267 NAAAVALYITQN 278
           +A ++ L   + 
Sbjct: 228 SATSIFLSEIRR 239


>gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 260

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 92/254 (36%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H  SAAL    +    + +       L  
Sbjct: 10  SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAE 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A          V    +   +        +        +  LD        +VLD + D
Sbjct: 70  YARAATK---NVVIADVLWSDISALESPAPMGFVLPLPEAEGLD---GRMPTVVLDRLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    +   K  +   S  + ++  GA              A   + 
Sbjct: 124 AGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHF----ALRLVEGLAPADID 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     L +         I+G EG+G+ P  Q+ A     +  PG  ++L
Sbjct: 180 RLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESL 239

Query: 264 NVSNAAAVALYITQ 277
           NV  AAA+ L+ + 
Sbjct: 240 NVGAAAAICLHASA 253


>gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 267

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 9/254 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDAN 86
           D+  +     + R   +           ++ AL      R +  L    + +A L  D  
Sbjct: 16  DFANLTDVALRRRTEPEGGLYIAESSKVIARALRAGHVPRAVLVLEQWLDDVAELLGD-- 73

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV     + ++++ G       LA    P L    + +++++ +++L+ + D  N
Sbjct: 74  --SDAPVYVGESELLEQLTGFNLHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTN 131

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+ RSA A   D ++ T R +        + + G +  +P+ RI N       + + G
Sbjct: 132 VGAVFRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAG 191

Query: 207 FQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F                      +++ALILG EG GL  +T E A S+  + M   + +L
Sbjct: 192 FHLAALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSL 251

Query: 264 NVSNAAAVALYITQ 277
           NV+ A+AV +Y  +
Sbjct: 252 NVAAASAVGMYTLR 265


>gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14]
          Length = 285

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 19/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       ++   +           +  AL+     I  L+  K      +    L  
Sbjct: 18  YARYTEAQLLNKDRPEDGLFIAESPKVIGRALDAGYIPISVLVEKKQMEENEETQEVLAR 77

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  + T     + ++ G +     L       L            + +L+ V +P 
Sbjct: 78  FENTGTSIFTAEFAVLTQLTGFKLTRGMLCALKRRPLEDFRKLCEGKNRIAILEDVMNPT 137

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA A   D ++ T   S       ++ + G +  IP+  I +  +        
Sbjct: 138 NVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQDDKERRCDRKDI 197

Query: 206 GFQTIGLS---------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                  +                       Q +  +K+A+ILG EG GL  +T +    
Sbjct: 198 WPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTEGDGLMQETIKACDY 257

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AVA +  + 
Sbjct: 258 TVKIPMSHGVDSLNVAAASAVAFWQLRK 285


>gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 218

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           + G H    A    +  +  +   +    R++  ++      V  V P+ + ++      
Sbjct: 2   IEGWHLFEEAQKADAEFLN-IFVLEEFSDRVEGLSH------VTYVTPEVLKELTD-SKT 53

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QG+  E      P  D   +  L++  + V DP N+G ++R+A A   DG++ +++ + 
Sbjct: 54  PQGIIAEVVMPSLPLADLKADRYLVL--EDVQDPGNVGTMIRTADAAGLDGVLISEKTAD 111

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    +S  G+  H+P    +      +             S      +      + A
Sbjct: 112 IYNQKTLRSMQGSHFHLPVWCTNVYEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGEFA 171

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L++G EG G+  +  + A  +AH+ MPG  ++LNV+ A  + L+
Sbjct: 172 LVMGNEGNGISEQMTKQADILAHIIMPGQAESLNVAVATGIVLF 215


>gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 251

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + ++ +  F+ G H   A+L +     K+F     K+                ++ V   
Sbjct: 3   NENKQQPDFVIGRHPAMASLKSGHSINKVFIQEGLKSESIGQIIAKAKKQGLVIQRVSKS 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D +   +  HQG+ L  A     +L+           +  +++LD + DPHN+G+ILR
Sbjct: 63  KLDTLANGQ-NHQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    G+I  KR +   ++ +AK+++GA+E +P ++++NL + L+++   G    G 
Sbjct: 122 TADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGT 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                     +     + LI+G EGKG+   T+E    M  + M G I++LN S AA + 
Sbjct: 182 DMAGTDYRRWD-ATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLL 240

Query: 273 LY 274
           +Y
Sbjct: 241 IY 242


>gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
 gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
          Length = 194

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 83/162 (51%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A ++K
Sbjct: 26  HVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSK 85

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A GA E +PYI ++NL   L+++  +G   IG        L      D  A ++G EG 
Sbjct: 86  VACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPDSAAWVMGNEGD 145

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 146 GMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 187


>gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi]
 gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi]
          Length = 410

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 91/291 (31%), Gaps = 27/291 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   + + + + G   +  AL    R      + K+
Sbjct: 115 NLEFTRLTLQDPLMSTLLTEVRSRKRRDKNKQIIIEGRRLIEEALECGLRMHALFFSQKD 174

Query: 77  ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--- 130
            L  L      A   H   +  VP   +            LAL   P     L   +   
Sbjct: 175 QLGLLREPVAQAQQEHNTMIYKVPQHDLKTWSALVTPPGLLALFERPSARGLLQQQQLGS 234

Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G    +P 
Sbjct: 235 EPLPITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQFRLPI 294

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGA 235
                       +     +   +      P ++  +  +                LI+G 
Sbjct: 295 RDDVTWEQLALHIPPEAAEDCHVFIAENNPEKRTSQEGRTTVDYAELGKVGAHNILIIGG 354

Query: 236 EGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E  G+                  ++ +   I +LNV++A  + L+  +   
Sbjct: 355 ESHGVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRRKL 405


>gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae
           2603V/R]
 gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 247

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A    ++ +  +  T+ A+ RL        P     V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTDDVLKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +   L++  + V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R+                     S+     +   
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 195 KYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 327

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 121/289 (41%), Gaps = 30/289 (10%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSR---------------HTSQPENLFLYGVHTVSAALNNP 64
            A+ R  H  +KK Q   +++                  S      + G ++V  AL   
Sbjct: 40  KAEDREYHPAFKKKQEAEKRAAGQRQRGAARGVVRGTRRSTDGVEVIAGRNSVLEALRTD 99

Query: 65  SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              I  +        +   R            +  V    +D++   + VHQG+A +  P
Sbjct: 100 -VPITTVYVATRLDHDDRTREILQHAASAGLALLEVTKPELDRLTDGQ-VHQGVAAQVPP 157

Query: 121 LLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +D             L++ LD V DP N+GAILRSA AF   G++  +R S   +
Sbjct: 158 YEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGVLVPERRSAGVT 217

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
           A   K ++GA  H+P  R +NL  AL ++   G   +GL  D  + + +     D + ++
Sbjct: 218 ASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGELSLATDPLVVV 277

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
           +G+EGKG+    +ET   +A + +    +++LN   A ++ALY      
Sbjct: 278 VGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQSR 326


>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
          Length = 345

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 26/273 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +    +     I  LL           +A 
Sbjct: 66  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGV---EAPEAL 122

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQL 134
                 +  V    + K+ G ++V    A+    + +   D                 + 
Sbjct: 123 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNLFRDLGSHQDGDALDGLFSYPKR 182

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKT 244
                           G    S    ++             N+ + L+LG+EG GL  +T
Sbjct: 243 HDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAET 302

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 303 LQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 288

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 22/267 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +++               +  AL      I  L+         +  A +  
Sbjct: 17  YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALTADREPISLLVEEPWIGGMSETFARIDQ 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       LA      L    +  R ++ + V++++ D  
Sbjct: 77  RWGTDIPVYVASPEQLKQLTGYRLHRGALAAMKRWPLPSVEEVCRGARRIAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A + D ++ T           A+ + G +  IP+ RI             
Sbjct: 137 NVGALMRSAAALNVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGM 196

Query: 206 GFQTIGLSSDSKK------------------PLEQEIKNDKIALILGAEGKGLRPKTQET 247
                   +                         ++   DK+ALI G EG GL   T   
Sbjct: 197 QELRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHIDKLALIFGTEGDGLSHHTISR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M   + +LNV+ ++AVA Y
Sbjct: 257 ADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 298

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSR-------KIFQLLATKNALAR 80
             + +     +     +       G   V  AL  +  R        + ++ A++  L R
Sbjct: 19  RVRDVAKLAGRP-ARLKRGQFLAEGPQAVREALVLHQKRMAAGEPGVVHEVFASEACLDR 77

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                 L      +    + +  +         +A+     ++         +L+ VL  
Sbjct: 78  YPEFEKLAEGVNARLATDEVLAAMADTVNPQGIIAVCAFVDVALEAVLDAGPRLIAVLCQ 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR+A A   D ++ T       +    +S +G+L H+P +   +L+D   
Sbjct: 138 VRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGVDLSDLAT 197

Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                                    +       +             A + G E +GL  
Sbjct: 198 ACRERGIGVLAADGYGQLDLDQLQDENAARRLGNPGAESAYDLGRPTAWLFGNEAQGLSD 257

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                A     + + G  ++LNV  AA V LY +  
Sbjct: 258 AELALADHRVAVPVYGAAESLNVGTAATVCLYASAR 293


>gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TK+   +           PV T     +
Sbjct: 30  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 90  TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213
           ++ T   S        + + G +  IP+           +        M           
Sbjct: 150 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 209

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                      + +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 210 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 269

Query: 274 YITQN 278
           +    
Sbjct: 270 WQLGR 274


>gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 268

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 102/254 (40%), Gaps = 7/254 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    + +   + G + V AA++  +     +  T+ A  R       
Sbjct: 14  PRIVNAAKLH-RAASRMKAKQFIIEGENAVDAAVSTGAATD--VFVTEKAAERFADIVTA 70

Query: 88  PHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDP 144
                V    +  +    +          AL ++ +L           +L+ V    ++P
Sbjct: 71  CGYMDVYVHPITDKAAKHLADTATTTGIFALCSSSVLWSAGKILNGKPKLISVPVLTSEP 130

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ++R++ A   DG+I          + +A++++G+L H+P  R  N+ D L ++  
Sbjct: 131 GNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRK 190

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +  ++D +  L     +   A + G E  GL  +  E A     + + G  ++LN
Sbjct: 191 SGMQIVATAADGEVELADADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLN 249

Query: 265 VSNAAAVALYITQN 278
           ++ AA++ LY +  
Sbjct: 250 LATAASICLYESAK 263


>gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 297

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TK+   +           PV T     +
Sbjct: 53  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 112

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 113 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 172

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLS 213
           ++ T   S        + + G +  IP+           +        M           
Sbjct: 173 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 232

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                      + +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 233 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 292

Query: 274 YITQN 278
           +    
Sbjct: 293 WQLGR 297


>gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 253

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95
           KS H +  E  F+YG +    AL   +++I ++      ++ +              ++ 
Sbjct: 2   KSEHQAPNETGFIYGHYASVEALK-GTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D         +     ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G     +     +      ALI+G EGKG+ P  ++   SM  + M G +++LN S A
Sbjct: 180 VFGTDMAGEDYRHWD-ATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVA 238

Query: 269 AAVALYITQNHFA 281
           A++ +Y   +   
Sbjct: 239 ASLLIYQGFSSRN 251


>gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
 gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
          Length = 258

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 138/239 (57%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ T+NAL RL  DA        +  
Sbjct: 10  KEQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEIS 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL   +L  V          +++LD V DPHN+GAIL
Sbjct: 69  DPRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++  +R++  E+  LAK+ASGALE  PY+R+ NL D++ ++   G+  +G
Sbjct: 129 RSAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLG 188

Query: 212 LSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  +++  +E+ ++  +    AL++GAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 189 LDGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247


>gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 270

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R +  LL T   L+ L  D   P 
Sbjct: 17  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-PV 74

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + ++VG       LA    P   P  D ++ ++ + VL+ VND  N+G+
Sbjct: 75  DVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGS 134

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D ++     +        + + G    +P+ R+     +L ++   GF+ 
Sbjct: 135 IFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRL 194

Query: 210 IGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++         +       +K+AL++GAEG GL       +     + M     +LNV
Sbjct: 195 LAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLNV 254

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 255 ATAAALAFYERAR 267


>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 318

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 26/258 (10%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLAT-----------KNALARLDWDANLPHPFPVKTVP 97
             +YG + V  AL    R +F L                                VK   
Sbjct: 62  EIVYGTNPVLEALRRNRRALFALYVQTGEGGAANGGKGAGAESEILRLAEARAVTVKRAS 121

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAIL 151
              ++ +      HQG+ L+   L  PTL+ +          + + LD + DP N+GA L
Sbjct: 122 KHDLN-MACDNKPHQGVLLDAEALEIPTLEDLPKWDGRGEPPVWLALDEIVDPQNLGAAL 180

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     DG++   + S   +A ++K+++GA+E     +   +   L K    G+  +G
Sbjct: 181 RSAHFLGVDGVVCCAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFLAKARDEGWDVVG 240

Query: 212 LSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVS 266
            ++D   + +          L++G EG GLR   +     +  +         + +LNVS
Sbjct: 241 AAADARAEDVSDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVS 300

Query: 267 NAAAVALY---ITQNHFA 281
            AA + ++     +   A
Sbjct: 301 VAAGILIHRLVAARRSRA 318


>gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 251

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 7/248 (2%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTV 96
           S++ S+     + G + V   L    R + +++ ++ A         +        + +V
Sbjct: 3   SKNNSRSSENVVCGRNPVLELLKAARRTVNKIMVSRTARGVVISEIINLAKQKGIALHSV 62

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           PP+ +DK                      L          LL++LD + DPHN+GAI+R+
Sbjct: 63  PPEKLDKFSESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLGAIIRN 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
            VAF  DG+I  K  +   +  ++KS++GA+EHI   R+ N   A+  +    F  +G  
Sbjct: 123 CVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFWIVGA- 181

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  + LE+      +A+I+G+EG GL   T++ +  +  +    II +LN S A+AV L
Sbjct: 182 ENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASAVIL 241

Query: 274 YITQNHFA 281
           Y       
Sbjct: 242 YEIAKKRK 249


>gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 236

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            +AL N +R+  +LLA +N       +           V+ V  + ++ ++ K A HQG+
Sbjct: 1   MSALTNQNRRCIELLAPENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60

Query: 115 ALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    +S
Sbjct: 61  ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228
           PSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ +++      K
Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 304

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 5/222 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+G H V AAL NP+R   +L  T+ A+     D +A LP   PV+      + ++V ++
Sbjct: 49  LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108

Query: 109 AVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A HQGL L+ +PL    LD        + L++LD V DPHN+GAILR+  AF    +IT 
Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R++P ES  LAK+ASGALE +P++R+ NL+ AL+ +   G+  I L  + K      + 
Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270


>gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
 gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
          Length = 216

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 89/195 (45%), Gaps = 5/195 (2%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPH 145
                     + + ++ G +  HQG+  +       +++ +   +   L+++LD + DPH
Sbjct: 18  RGIRYSFESEENLRRLSGTKK-HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPH 76

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R++V    +GII  K  S   +  + K ++G +       ++NL   ++++   
Sbjct: 77  NLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKER 136

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +  S  +  P+ +E      A + G EG+G+R   +E    +  + M   I +LNV
Sbjct: 137 GVW-VYASDVNGTPIYEEDFTLPTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNV 195

Query: 266 SNAAAVALYITQNHF 280
           S +  + L+      
Sbjct: 196 SVSVGIVLFEAVRQR 210


>gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 244

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H +   L      + ++      L  LD          +  V    +D+++    
Sbjct: 5   LIYGKHVIYELLKKHKNMVKEIWV--KNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNE 62

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +HQG+  +         D        +   L++VLD ++DP+N GAI+RS    + DGII
Sbjct: 63  LHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 T-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+     S VL  S+  A +       +         ++  +      + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K  +I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
 gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
          Length = 244

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 3/230 (1%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V+  L +     KI      K    +   +        +     +T +   G  
Sbjct: 16  IIGINPVTEVLKSDKNIEKIEVYKGIKKDTIKEILNLASKRNIKIFYTDRRT-ENSQGVV 74

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+                   ++  ++++LD + DP N GAI+RSA  F  DGI+   R 
Sbjct: 75  ALVSEFDYYLELTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRN 134

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +  + KS++GA+EH+  I+++N++D + K   +G++  G  +D +    +E    K
Sbjct: 135 NVKVTETVVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYYEESYPKK 194

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + L+LG+EG G+R K +E       +H+ G   +LNVS A  + L     
Sbjct: 195 VCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIILAEMSK 244


>gi|254495075|ref|ZP_05107999.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819425|gb|EAQ40582.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 242

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 21/252 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K + S +QK ++  +       GV  V   L   S K+ QL A          D      
Sbjct: 9   KVITSLSQK-KYREKHGLFIAEGVKVVEELLQF-SLKVMQLFALDGYDLEGYEDV----- 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +    + KI   ++ ++           P    +++   ++ LD +NDP N+G I
Sbjct: 62  --VTRISEAELKKISKLKSPNKV----VGLFKIPDEQQLQHKGFILALDEINDPGNLGTI 115

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F    ++ +K      +  + +++ G+L  +    +                  
Sbjct: 116 IRLCDWFGVQQLVCSKNTVDCYNQKVVQASMGSLTRVSIKYLDLEAYLNSTKTPIYIA-- 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
                    +      ++  L++G E  G+    +    +   +   G     ++LNV+ 
Sbjct: 174 ---DMQGSNVYSSQLPEEAILVMGNEANGISDAVRAIVQNKISIPRFGDTQETESLNVAT 230

Query: 268 AAAVALYITQNH 279
           A A+ L   +  
Sbjct: 231 ATAILLSEFKRR 242


>gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 248

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 10/243 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +QS +QK ++  Q     + G  +V   L +  +   +L+       + +        
Sbjct: 8   KYIQSLHQK-KYRQQHGAFLVEGAKSVQEVLQSDFQT--ELVVATEGFYKENAHLTDHQR 64

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+      +++    E+ +  LA+       P L       L++  D + DP N+G I
Sbjct: 65  TPVEIASVAELERAGTLESNNAALAVVRTKENRPLLAGPNEIALIL--DDIRDPGNLGTI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A  +    I+ ++  +   +  +  ++ G+   + +          Q   +     +
Sbjct: 123 LRIADWYGVRKILCSETTADVYNPKVISASKGSFTRVNWWYGDITRVLAQATSAVYGAFL 182

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                          +    L++G E  G+RP+     T    +   G  ++LNV  A A
Sbjct: 183 DGEDVHS-----LGFDASGYLVMGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATA 237

Query: 271 VAL 273
           V L
Sbjct: 238 VLL 240


>gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio]
 gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A
 gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio]
 gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio]
          Length = 435

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 98/322 (30%), Gaps = 47/322 (14%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
              +  K+  L    + K         ++ S  +      +   + L G   +  AL+  
Sbjct: 99  ESSQINKLK-LAGLRFEKAPAGDNRLARVSSVARSRAFRDKEGKVLLEGRRLICDALSAG 157

Query: 65  SRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           +       +    L  L  D         VK    +    +V  + +    +   A  L+
Sbjct: 158 ASPQMIFFSLLERLQELPLDKLQQAKLIKVKYEDIKLWSDLVTPQGLIAIFSKPDASRLT 217

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              DA  ++  L ++ D+V D  N+G ILR A A   D ++ +K    +    + +SA G
Sbjct: 218 FPKDARLQSVPLFLICDNVRDAGNLGTILRCAAAAGGDRVLLSKGCVDAWEPKVLRSAMG 277

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQT--------------------------------- 209
           A   +P     +  D  + +                                        
Sbjct: 278 AHFRLPVFPNLDWDDISKHLPKNVIVHVADNYSTSTKQLVSGQTENVSSDDYSESDSDDD 337

Query: 210 -------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPG 258
                    L     +   +       AL++G E  GL  +    A         + M  
Sbjct: 338 DDEEEDEDSLPHVKPQVYHECWAQRSAALVIGGETHGLSVEALRLAEETDGKRLFVPMAP 397

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            +++LN + AA + L+  +   
Sbjct: 398 GVESLNSAMAAGILLFEGRRQL 419


>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 254

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 13/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    Q S +  + +++ L G   ++      +  I +LL     L   +  A
Sbjct: 15  QNPLVKHLVKIRQNSDYRQEHQSVVLEGSTVIAEV--AKTHPIKRLLTVDLCLIPSEISA 72

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V    +DKI G +    G+  E        L  +R+   L+VL+ +NDP 
Sbjct: 73  E-----EILQVDQAILDKISGMQHSP-GVLAEVKMPSPSPLKNIRS---LLVLNQINDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA+AF  +GI    +     +    +SA GA   +PY +       L+++ + 
Sbjct: 124 NLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSARGATFRLPYRKGDLQ--ELEEILTH 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T  ++  S  P++     +K+AL+L  E +G+   T    +    + M G +++LNV
Sbjct: 182 NKLTTWVADVSGTPMQDITPPEKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNV 241

Query: 266 SNAAAVALYITQN 278
           + A A+ L+  + 
Sbjct: 242 AVAGAILLHYLKK 254


>gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 272

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 100/257 (38%), Gaps = 8/257 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY +++  N +    ++       G   +  A          LL      A    D   
Sbjct: 15  ADYTRLRDVNLRRHLEAEHGLFMAEGDKVIRRAAAAGFEPRSFLLT--ERRAEALDDVVA 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P+  V   T +K+VG +     LA      L P  D +  ++ ++VL+ + D  N+
Sbjct: 73  ASSAPLYVVGEDTAEKLVGFDLHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKM 202
           GAI RSA     D I+   R +        K + GA+  +P+ R+ +             
Sbjct: 133 GAIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLRAAGF 192

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IK 261
           H         S   +  +      D++ L+LG EG GL  +  E AT+  H+ M    + 
Sbjct: 193 HLMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVD 252

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ AAA+A Y    
Sbjct: 253 SLNVTAAAAIACYELTR 269


>gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY ++     +     +           ++ AL    R    +L  +  L  ++     
Sbjct: 15  ADYSRLTDVALRRVSEPEGGLYIAESTKVITRALAAGHRP-RSVLLQEQWLPDVEPLLAP 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV       + ++ G       LA    P L   +D +R ++ ++VL+ + D  N+
Sbjct: 74  FPEAPVFVGEAAALQRLTGYHLHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS      D ++ + R +        + + G +  +P+ RI    +A   +   GF
Sbjct: 134 GAIFRSVAGLGADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGF 193

Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +                     +++A++LG+EG GL  +    A  +  + M   + +LN
Sbjct: 194 EIAALALADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLN 253

Query: 265 VSNAAAVALYITQ 277
           V++A+AVAL+  +
Sbjct: 254 VASASAVALWALR 266


>gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 225

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 9/231 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-- 107
            ++G +TV  AL      +  L    N+           +    +T  P+  +   GK  
Sbjct: 2   IIHGRNTVEEALKLG--IVKLLFVKVNSTFDTS-----KYDVETRTYGPKEFEHYYGKEA 54

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           + +   +            D +     +++LD + DP N GAI+R+A  F    I+    
Sbjct: 55  QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILVGLD 114

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                ++ + K++SG + +   +   N   AL+K+   G+       + K  L+     +
Sbjct: 115 RQAPITSAVCKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDVEFAE 174

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K  +I+G+EGKG+RP   +TA     + M G I +LNVS +AAV LY   N
Sbjct: 175 KSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEYAN 225


>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 355

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 100/278 (35%), Gaps = 28/278 (10%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSR-KIFQLLATKNALAR 80
           +   K      Q S +     ++ + G   +               +I  LL  + A   
Sbjct: 74  NPFVKHCLKLRQSSSYRHAHGSVLVVGAIPIREVCMFQMNKQGITSEIECLLLHEEAQIP 133

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----------PLLSPTLDAV 129
              ++       V ++  + +  +   E+V     +               +        
Sbjct: 134 QGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFIDLKDDKDIITDCNKWFP 193

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            ++  ++VLD + DP N+G ++RSA+AF  DG           +    +++ GA   +P 
Sbjct: 194 SSAHRVLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPI 253

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------NDKIALILGAEGKG 239
           +  +     + +         G  + S +  +   K             + LILG+EG G
Sbjct: 254 VSGNWNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLCLILGSEGNG 313

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  ++++    +  + M G  ++LNVS A  + L++ Q
Sbjct: 314 LSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQ 350


>gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 253

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 90/251 (35%), Gaps = 6/251 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++        + G  +V   L++    I  +L T     +        
Sbjct: 6   RIKYINSLKIK-KYRQLHGAFMVEGAKSVLELLDSDFE-IEFVLVTPEFQQKYSSILTR- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V+TV  Q ++ +   +      +L  A        +    + +++LD V DP N+G
Sbjct: 63  HNVSVETVTAQELEGLGSFQTN--DSSLAVAKTKENAFLSPAAKEYILMLDDVRDPGNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    I+ ++  +   +  +  +A G+   +       +    +   +    
Sbjct: 121 TIIRIADWYGITKIVCSRDTTDIYNPKVIAAAKGSFTRVNLYYTDLIQYFEEIKDTGRQV 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                        +   +    +I+G E  G+  + ++  T+   +   G  ++LNV  A
Sbjct: 181 IGAFLGGDSLYEFEYPADGG-IIIMGNESNGISEQVEQFVTNKIMIPRFGAAESLNVGIA 239

Query: 269 AAVALYITQNH 279
            AV L   +  
Sbjct: 240 TAVMLDNMRRQ 250


>gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 263

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 16/258 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K +++   K +H          G   V   L     K+        A  +      +
Sbjct: 6   AKIKYIRALETK-KHRDAEGVFVAEGPKVVGELLAKTPAKLLV------ATPQWRASNAV 58

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                + TV    + K+   +A  Q   +  +     S T   V  ++L ++LD + DP 
Sbjct: 59  QEGTELITVSNDELHKLSFMQAPQQVLAVFPKLYEGESTTAGNVETNELTLMLDGIQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F    ++ +       +  + ++  G++  +        T       S+
Sbjct: 119 NLGTIIRLADWFGIRHVVCSTDTVDVYNPKVVQATMGSIARVKVSYTPLETLLDALPPSF 178

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIK 261
                 L  D+    +         +++G EGKGL    ++  T    +          +
Sbjct: 179 PVYGTLLDGDNIYTQQLCAYG---IIVMGNEGKGLSQGVRKRVTHRLLIPSFAIGEERAE 235

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+NA A+     +  
Sbjct: 236 SLNVANATAIVCAEFRRQ 253


>gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 247

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G H V+AAL NP+R + ++  T+ ALA LD    LP   P+       + ++V  +A H
Sbjct: 19  WGRHAVTAALANPNRTVRKIWGTREALAALD----LPPVVPITYADAADLGRLVPADAPH 74

Query: 112 QGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QGL  E  PL    L     +   + + L+VLD V DPHN+GAILRSA AF   GI+T  
Sbjct: 75  QGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVLDQVTDPHNVGAILRSAAAFDALGIVTQD 134

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES  +A+SASGALE +P+IR+ NL  AL+++   GF  IGL+  + + L Q +  
Sbjct: 135 RHAPPESGTVARSASGALETVPWIRVVNLARALEEIAEAGFWRIGLTGHANQTLAQAMGT 194

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +I ++LGAEG+G+R  T+     +A L +   +++LNVSN
Sbjct: 195 QRICIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNVSN 235


>gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 297

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 87/280 (31%), Gaps = 28/280 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNALAR 80
             + +     +     +  +    G  +V  AL     +        +  + A++  L R
Sbjct: 19  RVRDVAKLAGRP-ARLKRGHFLAEGPQSVREALRLHQERLAAGSPGVVTDVYASEACLDR 77

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                 L           + +  +         +A+     +S         +L+ VL  
Sbjct: 78  FPEFEELAEGTNAWLATDEVLAAMADTVNPQGIIAVCRFVDVSLESVLDAGPRLIAVLCQ 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR+A +   D ++ T       +    +S +G+L H+P +  + +    +
Sbjct: 138 VRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGAEVAHLAE 197

Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              S                     +          P          A + G E +GL  
Sbjct: 198 ACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDSAYDLGGPTAWLFGNEAQGLSE 257

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
              E A     + + G  ++LN+  AA V LY +      
Sbjct: 258 AELELADHRVAVPVYGAAESLNLGTAATVCLYASARSQRN 297


>gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 267

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 8/268 (2%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            + D    +L     DY+ ++    +    +        G   V  ++          L 
Sbjct: 6   EITDPTDPRL----ADYRDLRDVELRKHLEATHGLFLAEGEKVVRRSVEAGFTP-RSFLM 60

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
               L  L    +     P   V     +++ G       LA      L      +  ++
Sbjct: 61  APRWLDGLAEVLDRS-DAPCYVVSAALAEEVTGFHVHRGALASLERRPLPSVDSVLSGAR 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VL+ + D  NIGAI RS  A   D ++   R +        K A GA+  +P+ R+ 
Sbjct: 120 SVLVLEDIVDHTNIGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLP 179

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251
           +   AL ++ + GF T+ L+  +     +      DK+AL+LG+EG GL P+ ++ A   
Sbjct: 180 DWYGALPELSAAGFTTVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRR 239

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
           A + M   I +LNV+ A AVA Y+T   
Sbjct: 240 AIIPMREGIDSLNVAAATAVACYVTARR 267


>gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 226

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 59  AALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             L N    K++  +       +  +         +  +  + +D++  + A HQG+   
Sbjct: 1   EILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELS-EGANHQGVVAL 59

Query: 118 TAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            +     TL+ +  + +  +++LD + DPHN+GAI RSA AF   GII  K  S   + V
Sbjct: 60  VSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDV 119

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + K+++GA++++  +  +NL+++++K+   G+   G      +   +     KI L++G 
Sbjct: 120 VYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGA-DMEGEEYFKSDLKGKIVLVVGN 178

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           EGKGL P  ++    +  + M G I +LN S AA++ +      
Sbjct: 179 EGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQ 222


>gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 273

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 94/260 (36%), Gaps = 12/260 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K + S   K ++  +       G   V+  L   S     L+AT    A    + N 
Sbjct: 20  ATVKLIHSLGLK-KNRDKEGLFVAEGPKVVADLLAVASP--LHLIATSEWFAGHRMEMNQ 76

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                +  V    + K   ++   Q  G+          T   +   QL + LD V DP 
Sbjct: 77  WGKVKISEVTEDELRKASFQKTPQQVIGVFPIPETEAQDTATDMPGRQLCLALDGVQDPG 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + +  ++  + + +  + ++  G++  +    I+         H  
Sbjct: 137 NLGTIIRIADWFGIEHVYCSEDTADAYNPKVVQATMGSIARVKVHSINLPQFIT---HLP 193

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261
               I  +    + +  +  +    +++G EGKG+  + ++  T    +          +
Sbjct: 194 EGVPIYGTLLDGQNIYTQELSANGLIVMGNEGKGISEEIRKLVTHKLFIPSFPPDTDTAE 253

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ A AV     +   +
Sbjct: 254 SLNVAIATAVTCAEFRRRIS 273


>gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1]
          Length = 242

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 91/244 (37%), Gaps = 12/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                +YG H V+  +      I ++  + +            + F +  V  + I+ +V
Sbjct: 2   ENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKS-----NNEFQILKVDLKKIENLV 56

Query: 106 GKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           G EA HQG+  E                     +L+++LD + DP+N GAI+RS+     
Sbjct: 57  GNEANHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGV 116

Query: 160 DGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
           D I+         ++ + K+++G   +       +          +  +      +    
Sbjct: 117 DQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESN 176

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +    ++ A+++G E  G+     + +     +     I + N + A ++ LY   N
Sbjct: 177 DMRKVDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVAN 236

Query: 279 HFAK 282
           +  K
Sbjct: 237 YIGK 240


>gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 251

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+H V  A+       KIF     K AL          +  P   VP + + ++    
Sbjct: 11  IFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSYVPIEKLQRLT--R 68

Query: 109 AVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+    L+             L ++LDH++D  N+GAI+R+A     +G
Sbjct: 69  GNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRTAECTGVNG 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  K+ S S    + K+++GA+ ++P  ++ NL DA+  +   G + +G +  +   L 
Sbjct: 129 ILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGATEKASSLLY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ +A+++GAE  G+     +     A L + G   +LNVS A    LY      
Sbjct: 189 DFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFLYEVVRQR 247


>gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 241

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 97/243 (39%), Gaps = 16/243 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +QS + K ++ ++     + G   +S  L++  + I Q+  T+    +L    NL   
Sbjct: 8   KYIQSLHNK-KYRTEYGQFLVEGEKGISELLHSDYQ-IIQIYITEEFAQKLPTHKNL--- 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                 P   I+ +   ++   G+A+          +       +++LD + DP N+G I
Sbjct: 63  ---MVAPVTQIESVSTYKSNASGIAVVQQKRFEVPENFQGR---ILILDGLRDPGNLGTI 116

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +  + +I ++      +  +  S  G+   +    +   +   +  H      +
Sbjct: 117 IRLADWYGIEHLICSEDTVEFYNPKVISSTMGSFTRVKPYYLDIHSFMEKYPHPILGADL 176

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +  K           +AL++G+E  G+  +T+   T   ++   G  ++LN + A  
Sbjct: 177 EGQNVHKWD-----FPKNMALVIGSESHGISAETERQLTDKVNIPRIGKAESLNAAMATG 231

Query: 271 VAL 273
           + L
Sbjct: 232 IIL 234


>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 324

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 93/288 (32%), Gaps = 35/288 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                 +    KS    + +   + G + V  AL+    K   +  +         +   
Sbjct: 30  PRIIAARKLL-KSAGRRKEKKFLVEGFNGVEGALSAGVAKEVFVADSAWDKFSTLRELAR 88

Query: 88  PHPFPVKTVPPQT---IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
               PV  +  +    + + V    V     L +  + S    A R   L+ V   ++DP
Sbjct: 89  EQHVPVSVIDDKAASALSETVSHSGVCATCQLLSTSVESCINRARRGRGLVAVGIDMSDP 148

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N G  +R+A A   D ++         +    +SA+G++  IP  R  ++T+       
Sbjct: 149 GNAGTFIRTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLADLSS 208

Query: 198 ------------------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
                                     +       + +G + D+       +     A + 
Sbjct: 209 AGFQIVATTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSAWLF 268

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G E  GL     + A     + + G  ++ NV+ AAA+ LY      +
Sbjct: 269 GNEAHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALS 316


>gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 284

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 13/261 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88
           Y ++     ++R               +  AL    + +  L+        +  + A   
Sbjct: 20  YTRLTEVQLRNRLEPDKGIFIAESPKVIDRALAAGVQPLSFLVEGSWLDSMKDLFSAAEK 79

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV       + KI G       L+      L    D  R++  + VL+++ D  
Sbjct: 80  RWGYDIPVFVAGFDLLHKITGYRLHRGALSAMRRWKLPTVEDICRDAHRVAVLENIVDYT 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---------RISNLT 196
           N+GAI+RSA A + D ++ T   +       A+ + G +  +P+                
Sbjct: 140 NVGAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGGDNPHAWPQPSI 199

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L  +                      K D++ALI G EG GL  +T   A     + M
Sbjct: 200 HQLTDLGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTLAAADLTVKIPM 259

Query: 257 PGIIKALNVSNAAAVALYITQ 277
              + +LNV+ ++AVA Y T 
Sbjct: 260 SHQVDSLNVAASSAVAFYATM 280


>gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
 gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
          Length = 259

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 8/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106
            +YG+HTV++ LN+ +     +   KN+     +            ++ V  + +D +  
Sbjct: 5   IIYGIHTVNSYLNDKNVVFELVYILKNSRNNRIFQIKKKLESFGVSIRLVNRRFLDHLSN 64

Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +    LA+        +++       +   L ++LD + D  N+G+ LR+A  F  D 
Sbjct: 65  YISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGVDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I +K  S   + ++ K + GA  ++P IR + +    +               ++   +
Sbjct: 125 VIVSKNRSARINEIVEKVSCGASRYVPMIRTNLVNCIEKLKKYDVQVLGTDEKANRSIYD 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            EI   KIA+I+G E KG+R   ++  + +  +       +LNVS  A + L+       
Sbjct: 185 LEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLFEVCRQRK 244


>gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 277

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 10/279 (3%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I     E+I  + D   A+L     +Y ++   + + R   +           V  A
Sbjct: 1   MPEILNP--ERIMQVADLSDARLD----EYLRLSEAHLRMRTDVENGLYIAESTKVVQRA 54

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +N         L  +  L +L  + N     P+     + ++ +VG       +A    P
Sbjct: 55  INAEHVP-RSFLLAEKHLDQLVEEFNRFPDAPIFIGDDRQLEDLVGFHLHRGAMASMNRP 113

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   +  S  + +L+ + D  N+GAI+RSA     D ++ T +         A+ +
Sbjct: 114 EPLDLSQVLEASSRVAILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVS 173

Query: 181 SGALE---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            G +     +  +        L++                    Q     K+A+ILG EG
Sbjct: 174 MGTVFDLPWVRMLSWPEDIRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEG 233

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+  +  E       + M   + +LNV  A+A+A +  
Sbjct: 234 RGVTAQALEAVDQTVIIPMHREVDSLNVGAASAIAFWHL 272


>gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 265

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 7/260 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +++   K+  +   K     +     + G   +  AL           +T  +    ++ 
Sbjct: 6   KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRAGYLCQHVFCSTHLSEKEKEFL 63

Query: 85  ANLPHP-FPVKTVPPQTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
             L      +      T+ ++      ++    +           +         ++++ 
Sbjct: 64  YELKRNSTKILYCLDSTLAQLSFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIEQ 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V  P N+GAILR A     DG+I         +  + +S+ GA+  +P + IS       
Sbjct: 124 VEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKEL 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +           +       AL+ G+E  GL         S   L M G  
Sbjct: 184 FKQEGWTVFVTSPRAETMYFSKNYL-GPTALVFGSEKDGLTEDWFSEDFSEIALPMLGES 242

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ + A   Y      
Sbjct: 243 DSLNLATSVAAVAYEVVRQR 262


>gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 253

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 46  PENLF-LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101
            +    +YG   V  AL +   ++ +++    A          A      PV+      +
Sbjct: 10  KDRFLTVYGRKPVLEALADDGLRVDKVILADTARGPGAAEIQRAAKAAGVPVQRASAHRV 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             + G     QG+  +        L       R    +++LD +  P N+G ILR+A A 
Sbjct: 70  KVLAGNGKQDQGVLADVLAPRMRALSAALADRRPPSRVLLLDGITTPANVGMILRTATAA 129

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  +R   +   ++ K+++G     P +R  +  +A + +   GF    L + ++
Sbjct: 130 GLDGVIVPRRGVAALDPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGFGLYALGASAR 189

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +       + A +LG E  G+  +  E  T    + MPG +++LNVS AAAV  +   
Sbjct: 190 TTVFDVDLPQRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELV 249

Query: 278 NH 279
             
Sbjct: 250 RR 251


>gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 332

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 100/298 (33%), Gaps = 35/298 (11%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +  +I ++ D    ++     DY  +     + R           G   +  AL    R 
Sbjct: 33  RERRIVAIDDPADPRVE----DYVALTDVALRRRREPAEGLFIAEGERVIDRALRAGYRP 88

Query: 68  IFQLLATK----------------------------NALARLDWDANLPHPFPVKTVPPQ 99
              L++                                      +    H  PV    P 
Sbjct: 89  RSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVAGPA 148

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +I G E     LA      L   ++ +R ++ ++V + +    N+GAI RSA     
Sbjct: 149 VLAQITGFEVHRGALASMCRRPLLNPVELLRVARRVLVCEDLVSHTNLGAIFRSAAGLGM 208

Query: 160 DGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           D ++ + R +        + + G   A+ +            L +           S   
Sbjct: 209 DAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALSLLGEAGFEVLALTPASDAD 268

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +      D++AL+LG EG+GL  +   TAT    + M   + +LNV+  AA+A Y
Sbjct: 269 ELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAATAAIACY 326


>gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894]
          Length = 357

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 113 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 172

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++D       +   ++ L+ V +PHN+GAI+RS  
Sbjct: 173 ELTKASGTE-HHGGVCFLIKKRSGASVDQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 231

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  S  ES    ++A G  EH+  I   + +DAL +  + G+  +  SS 
Sbjct: 232 HFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 290

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL +     K+ L+LG E +G+   TQ  A     +   G +++LNVS A  V L  
Sbjct: 291 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 350

Query: 276 TQNH 279
               
Sbjct: 351 WWRQ 354


>gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 252

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 7/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++ G + V   L     ++ +++  + +   R   +         +      +  +VG  
Sbjct: 13  WVSGFNPVREVLLTGRVEVLEMIVARSDQRVRELVELGALRGIAPRQETRDGLSALVGH- 71

Query: 109 AVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A HQG+AL         L+          + L++LD + DP N+GA+LRSA      G+I
Sbjct: 72  AHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAMLRSACFLGARGVI 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  S   ++ + + A+GA  ++P I+++NL  AL+++   G    GL + + + +   
Sbjct: 132 VPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIFGLDAQAAQTIYDA 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + L++G E KGLRP       +M  +   G +++LN + + A+AL   Q   
Sbjct: 192 DLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGAIALAEVQRRR 248


>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 100/271 (36%), Gaps = 33/271 (12%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           +++I S +          +   K+++            E   + G H V   L      +
Sbjct: 2   NQRITSTQ----------NPKIKQLRKIFND----KNSEFFIVEGYHLVEEVLK--ENLV 45

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L    +  A+ +             V    +  I   +     +AL      +  L  
Sbjct: 46  IELYELDSKTAKYENSI---------IVSDNVLKAITKTKTPEGVVALCRKKSNTSEL-- 94

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ LD+V DP N+G I+R+A +F+ D +++   +   +    ++ A   +  + 
Sbjct: 95  ---GNRVVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVNFYNDKIVRSSQGALFTVNLVN 151

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
           Y   +  +   +   +         S +  P+ +    N+KI +I G EG G    + + 
Sbjct: 152 YAYDNLHSVLKKYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSGASETSIKI 211

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A  + ++ +    ++LNV+  A + LY    
Sbjct: 212 ADKLVYVPI--DFESLNVAVCAGIVLYEANK 240


>gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
 gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
          Length = 263

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 17/258 (6%)

Query: 39  KSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPV 93
           +     +      +YG   V  ALN+       L    +  +    R   DA        
Sbjct: 5   RKPDRQERRRFLTVYGRKAVLEALNDRHMDCRILHLASSNRSGGVLREIQDAADARGLDC 64

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVN 142
           +    + + +I       QG+AL+        LD                Q L+ LD V 
Sbjct: 65  REHSREELARISRNGRQDQGVALDVYCPAMRELDDYINDINDISGESGKPQRLLALDGVT 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+G ++RSA A   DG++   R +P+   ++ K+++G +   P +R ++L  A Q +
Sbjct: 125 NPQNMGMVIRSAAAAGIDGVLYADRGNPALGPLVIKASAGTVFRAPLLRCASLFKASQSL 184

Query: 203 HSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              GF+   L +   +   + +    +   +LG E  G+  +          + M   ++
Sbjct: 185 CEQGFRLYRLQASGSRTLFDGQPFAHRALFVLGGESDGISRELSALPGENLSIPMANGVE 244

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ + A+  Y+    
Sbjct: 245 SLNVAVSGALVAYVAATQ 262


>gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 266

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 9/255 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLDWD 84
            K+++   +      +    ++ G   V+ A+N            +LL+     A     
Sbjct: 12  VKEIRQL-RSRDARDRTGTYYIEGARIVAQAINAGLPLEIGAISLELLSRTEHSAGTVSA 70

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   V  +       I  KE +  G+         P  +     +  + L+ V +P
Sbjct: 71  LRKAAKQMV-ELSASAFAGISFKENLQ-GIGAVVKLQQEPLSNVQLTDRPWVALNGVGNP 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI+R+  A  C+G+I     +        +++ G+L     +  +   +      +
Sbjct: 129 GNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLF-ALRMVRTTFDEFAAWKQT 187

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+  IG + D ++  +         L++G+E  GL    Q    ++  + M G   +LN
Sbjct: 188 NGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSVGEQSVCDTLVRIPMAGTCDSLN 247

Query: 265 VSNAAAVALYITQNH 279
           +  A ++ LY     
Sbjct: 248 LGVATSIVLYEMFRQ 262


>gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 237

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G  +V AAL    R +  L        R              PV  +  + I+ +  
Sbjct: 2   IIEGATSVKAALEAKKRVVNALYVDDKKKDRNLNYILFKAHEAHVPVYRLKREEINTLA- 60

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               H GL  +    +   L+  R+S LL+ L+ V DP N G ++R+A +   DGI+  +
Sbjct: 61  FGKTHGGLLADVEERIMDHLEISRSSFLLV-LEGVVDPFNFGYMVRTAYSAGVDGILIPE 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            +     +V+ KS++GA +H   I   +L   L+ +   GF       D+    ++    
Sbjct: 120 YHWHDLESVILKSSAGAFDHCSIIPSKDLAQDLRLLKEKGFTIYAGYRDNAIVYDEADYT 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVALYITQNHF 280
           +     +G E +GL  +  E      ++      K  LN ++A +V  +      
Sbjct: 180 NPTVFCVGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASACSVFCFEVLRQR 234


>gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 244

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 22/255 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S NQK +   +     + GV +++          F   + +        +  L H 
Sbjct: 8   KLIRSLNQK-KFRLKHGLFVVEGVKSINE---------FLNSSLELYSLLSTENVFLSHS 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + +  + +  I         LA+   P+        R    L+ LD V DP N+G I
Sbjct: 58  KETQLISLKELQAISHLSTAQVALAVFKIPVPKTDFKQNR----LLALDGVRDPGNLGTI 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F+   +I +K      +  + ++  G+L  +  I                   +
Sbjct: 114 IRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVIYTDLHKHLNTLDLPIFGTFM 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
              S   KP       +   +++G E  G+  + +E       +   G     ++LNV+ 
Sbjct: 174 NGESVYSKP-----LPEDFVIVMGNEANGVTKEIEELCNHRIAIPQFGSGAPTESLNVAT 228

Query: 268 AAAVALYITQNHFAK 282
           A A+ L        +
Sbjct: 229 ATAITLSEFSRRLIE 243


>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
 gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
          Length = 248

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 90/238 (37%), Gaps = 11/238 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  Q     + G H V  A+      + ++L  +     L+ D +      +  +     
Sbjct: 22  YRYQSLEYIVEGEHLVLEAIKMN--VVKEVLVKEGTTLHLNEDYHAVSN--IYLLKENLF 77

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D+I   E            +       ++N   L++LD V DP N+G +LRSAVAF  DG
Sbjct: 78  DQIASTETPQP-----IMAVCEMKTMNIKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +  + +S  GA+  +P +  +                     + +   E
Sbjct: 133 VILGDGCVDLYNEKVIRSTQGAIFKLPILNQNLEEAVTSLKEQGVRIYGTSLQNGRPLNE 192

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E    K+A ILG EG G+  +          + M   I++LNVS A ++ +Y     
Sbjct: 193 IEE-TMKMAFILGNEGSGVSKELLSLTDGNIFIEMSENIESLNVSIAGSIIMY-RFRQ 248


>gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
          Length = 303

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 27/276 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--------NNPSRKIFQLLATKNALAR 80
             + +     +     +       G   V  AL              + ++ A++  L R
Sbjct: 19  RVRDVAKLAGRP-ARLKRGRFLAEGPQAVREALTLHRERTAAGGPAVVHEVFASEACLER 77

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L   A+L     ++    + +  +         +A+ +   +S         +L+ V+  
Sbjct: 78  LPELADLALGTLLRLASDEVLAAMADTVNPQGIVAVCSFVDVSLDSVLDAGPRLIAVMCQ 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR+A A   D ++ T       +    +S +G+L H+P +  +++ + + 
Sbjct: 138 VRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGADVEELVA 197

Query: 201 KMHSW------------------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +                        +       +             A + G E +GL  
Sbjct: 198 QCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVASDYALESPTAWLFGNEAQGLSD 257

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                A     + + G  ++LN+  AA V LY +  
Sbjct: 258 AELALADHRVAVPVYGAAESLNLGTAATVCLYASAR 293


>gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
 gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
          Length = 247

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A    ++ +  +  T+ A+ RL        P     V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEAEKYGAQFLN-IFVTETAIDRLR------KPERAIVVTDDILKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +   L++  + V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGRFLVL--EDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R+                     S+     +   
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVEIEQFVNFCKAEGITMIATTLSEQSVNYKNLP 194

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 195 KYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
 gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
          Length = 232

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 3/230 (1%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V   L +     K+      K    +   +        +     +T +   G  
Sbjct: 4   IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASKRNIKIFYTDRRT-ENSQGVV 62

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+                   +   +++VLD V DP N GAI+RSA  F  DGII   R 
Sbjct: 63  ALVSEFDYYVDFTAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRN 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  + KS++GA+EH+  ++++N++D + K+  +G+   G  +D +    QE   +K
Sbjct: 123 SVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYPEK 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             L+LG+EG G+R K +E    +  +H+ G I +LNVS A  + L     
Sbjct: 183 ACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIILSEMSK 232


>gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae]
 gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 98/271 (36%), Gaps = 33/271 (12%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++I S++          +   K+++            E   + G H V  AL       
Sbjct: 2   SQRITSVQ----------NPKIKQLRKIFND----KNSEFFIVEGYHLVEEALKEN---- 43

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             L   ++      +D ++        V    ++ +   +     +AL         L  
Sbjct: 44  LVLELYESDYKTAIYDNSIL-------VSQNVLEALTKTKNPEGIVALCRKKPNFEQL-- 94

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ LD+V DP N+G I+R A +F  D +++   +   +    ++ A   +  + 
Sbjct: 95  ---GNKVVFLDNVQDPGNVGTIIRIAKSFGFDTVVSNVNFYNDKVIRSSQGALFTVNLVN 151

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
           Y   +     L+   +           S   +E+    +DK  ++ G EG G+     + 
Sbjct: 152 YNYDNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSALADI 211

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A  + ++ +    ++LNV+  A + LY    
Sbjct: 212 ADMLIYVPI--NFESLNVAVCAGIVLYEANK 240


>gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 283

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 19/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88
           + ++     +S+   +           +  AL      +  L+  K     +   D    
Sbjct: 16  FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  
Sbjct: 76  RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHT 135

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA A   D ++ T            + + G +  +P+ RI     A       
Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195

Query: 206 GFQTIGLSSDSKKPLEQEIK---------------NDKIALILGAEGKGLRPKTQETATS 250
              T                                +++AL+ G EG GL   T      
Sbjct: 196 WAPTGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AVA +  + 
Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 283

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 19/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP 88
           + ++     +S+   +           +  AL      +  L+  K     +   D    
Sbjct: 16  FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  
Sbjct: 76  RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHT 135

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA A   D ++ T            + + G +  +P+ RI     A       
Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195

Query: 206 GFQTIGLSSDSKKPLEQEIK---------------NDKIALILGAEGKGLRPKTQETATS 250
                                               +++AL+ G EG GL   T      
Sbjct: 196 WAPDGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AVA +  + 
Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 256

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 11/252 (4%)

Query: 39  KSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVK 94
           +S   S  +    +YG   V  AL + S  + ++L  + +         DA       V+
Sbjct: 5   RSSTRSPKDTFITVYGRKPVLEALADESLVVDKVLLAEGSRGEPVRAIRDAARARGVRVE 64

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
           T     +  + G     QG+  +        ++        R    ++VLD V +P N+G
Sbjct: 65  TASAHRVKVLAGNGRHDQGVLADVVAPRMAPVEEFVSDLGTRRGASVLVLDAVTNPANVG 124

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILRSA A   DG++  +R  P+   ++ K+++G     P +R +        + + GF 
Sbjct: 125 MILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFSAPVLRSATAAQGCAVLRAAGFA 184

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +   +     L +    +++AL+LG E +GL    +E       + M G +++LNV++A
Sbjct: 185 -VHGLAAGGDSLLEAELPERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVASA 243

Query: 269 AAVALYITQNHF 280
            AVA Y      
Sbjct: 244 GAVAAYELLRRR 255


>gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae]
          Length = 298

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 19/283 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  L D    +L     D++ +   + +         +   G   V   L +    +  L
Sbjct: 20  IEHLTDPLDPRLD----DFRDLNHSDNRPDLPGGKGLVIAEG-SLVIPRLVDSRFPVRCL 74

Query: 72  LATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +   N L +L  + +L       PV +V  +T+ ++ G +     LA            A
Sbjct: 75  VGFPNKLEKLLANVHLRAQLADVPVFSVDRETLAQVAGFDMHRGLLASADRVAGMSIAQA 134

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++ +++L+ V D  NIG++ R+A     D ++     +      + + + G +   P
Sbjct: 135 IDGARTVVILEGVGDHENIGSMFRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTP 194

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAEG 237
           +      +   Q+                   + +   D           K+AL++GAEG
Sbjct: 195 FAHFGGKSTTWQRELQELRDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEG 254

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            GL           A + M     +LN++ +AA+A Y      
Sbjct: 255 PGLTEHAMRATDQRARIPMASGTDSLNLATSAAIAFYERDRSL 297


>gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 248

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 7/246 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K +QS   K ++  +       G   V   L      + ++ AT   +A      + 
Sbjct: 5   AQIKYIQSLQHK-KYRQKSSQFMAEGDKIVPELLQEG-VPVKEVYATSAWIAAHRALLDR 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V    + ++      +Q +AL   P  +          + + L+ + DP N+
Sbjct: 63  TKDVNVTEVDENVLRQLSALTTPNQAIALLDIPGSAAIAPGSLKGTVSLALETIQDPGNL 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F    II T     + +    ++  G++  +  +     T   +       
Sbjct: 123 GTIIRIADWFGIRQIICTPDCVDAYNPKTIQATMGSIARVKILESDISTLIKEAGVPSYA 182

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+     ++    +E       +++G E +GL       +T    +   G  ++LN   
Sbjct: 183 ATLHGRDITEFSKLEEG-----IILIGNESRGLSEAVISASTHKITIPRLGGAESLNAGV 237

Query: 268 AAAVAL 273
           AA +  
Sbjct: 238 AAGIIC 243


>gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 266

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
               K    + ++    +     + G ++V AA+   S     +  T  A  R       
Sbjct: 15  PRIVKAAKLH-RTAVRRKEGRFIVEGSNSVEAAVATGSATD--VFITAEAAKRFADIVVA 71

Query: 88  PHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V   P  T     +          A+    L        R+ +L+ V    NDP 
Sbjct: 72  AGHMQVFVHPITTGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPG 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203
           N G ++R + A   D +I        +S+   ++++G++ H+P  R  ++ + L+  K  
Sbjct: 132 NAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGR 191

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                      +       E+     A + G E  GL P+  E A     + + G  ++L
Sbjct: 192 GLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESL 251

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ L+ +  
Sbjct: 252 NLATAASICLWESSK 266


>gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 240

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 5/238 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + K++  +      A            +D       + +LD + D  NIGAI+RS+ A
Sbjct: 59  DILSKLLENQTHQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSAA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  D II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +
Sbjct: 119 FDIDAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ +DK+AL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 179 NDYFTDKLISDKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236


>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
 gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
          Length = 288

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 23/272 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       ++   +           +  AL+     +  L+  K      +    +  
Sbjct: 18  YARYTEARLLNKDHPEEGMFIAESPKVIGRALDAGYEPLSVLVEKKQMEENEETSQIMNR 77

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  + T   + + K+ G +     L       L    D       + +L++V +P 
Sbjct: 78  FDDTKVSIFTADFEVLTKLTGFKLTRGMLCAMRRKPLRKFQDLCDGINRIAILENVQNPT 137

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA A + + ++ +   S       ++ + G +  IP+  I +  +   K    
Sbjct: 138 NVGAIFRSAAALNMEAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIRDSNEMRCKREVI 197

Query: 206 GFQTIG---------------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +                            + +K +K+A+ILG EG+GL  +T      
Sbjct: 198 WPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGNEGEGLENETIALCDY 257

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + M   + +LNV+ A+AVA +       K
Sbjct: 258 TVKIPMTHGVDSLNVAAASAVAFW----QLGK 285


>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 257

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 8/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWD 84
           + D     +     ++    +   + G   +  AL N    +  ++  +  +      + 
Sbjct: 10  NEDIIHFYNLIHDKKYREANQLFIIEGFKLLDEALQNQQTIVAIIINERVYDKEFETIFK 69

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
             L     +  V    I K+                ++    +    +  +++LD++ DP
Sbjct: 70  YTLYDNVQIYKVSENVIKKLSVNIDPSP-----ILAIVKMKEETCDVNDNVLLLDNIQDP 124

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+  AF+   +I         +  +  S     +       S+       + +
Sbjct: 125 GNLGTILRTCFAFNVKQVIFNNCVDLYNAKTIKASMGAIFKINFLRFNSSKLTLEFLLKN 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +    +   +   L +     K  L++G EG GL     + A+    + M    ++LN
Sbjct: 185 NFYLIATILDKNAISLNELKIKQKYCLMVGNEGHGLSQNFIDYASIKTMIKMN-QTESLN 243

Query: 265 VSNAAAVALYITQN 278
           V+ A A+ LY    
Sbjct: 244 VAVATAIFLYELNK 257


>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 308

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 11/269 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALA 79
           +          +   +++    + +     G   V  A  + +     + +L AT  A  
Sbjct: 31  ISPRSPRVSAARRLAKRN-FRGKEQLFLAEGPQAVREAAAHRAADAATLVELFATAEAAE 89

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V       I  I         + +                +L+ V
Sbjct: 90  RYADIIGEARDAGARVHLADEAVIADISTTVTPQGLVGICRFLDTPFEEILAARPRLVAV 149

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L HV DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  
Sbjct: 150 LAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQ 209

Query: 198 A----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           A                    D    L++       A + G E  GL  +T+  A ++  
Sbjct: 210 AVAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVR 269

Query: 254 LHMPGIIKALNVSNAAAVALYITQN-HFA 281
           + + G  ++LN++ AAAV LY +     A
Sbjct: 270 VPIHGKAESLNLATAAAVCLYASARAQRA 298


>gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Equus caballus]
          Length = 355

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 107/277 (38%), Gaps = 28/277 (10%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDAN 86
           +++  +      S+     L+G+     AL    R++ +LL                 A 
Sbjct: 35  RLRLDDLAPTVRSETGLELLFGLSPCLLALQAARRRVARLLLQAGRSGLQGERAELLRAA 94

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLD 139
                PV     + +D +   + VHQG+ +E                      QL ++L+
Sbjct: 95  EAQDIPVLRPRRKQLDALCHYQ-VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILE 153

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------- 192
            + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +            
Sbjct: 154 GLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFL 213

Query: 193 ----SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                        +   G +T   S        + + +    L+LG EG GL  + Q + 
Sbjct: 214 QVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASC 273

Query: 249 TSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
             +  +     +P  +++LNVS A  + L+   +   
Sbjct: 274 QVLLTILPGRQLPPGLESLNVSVATGILLHSICSQRK 310


>gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 251

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 7/241 (2%)

Query: 46  PENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTI 101
            +    +YG + V   L +P   + +++   +A      +           V++ P + +
Sbjct: 8   KDRFITVYGRNPVHEVLLDPDLHVDKVVIADSARGSGLTEIRRAAGRRGITVQSAPAERV 67

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            K+ G     QG+  +        L+      + + ++VLD +  P N+G ILRSA A  
Sbjct: 68  KKLAGNGRQDQGVFADVVAPRMLPLEVAIDHADLRTVLVLDGITTPANVGMILRSATAAG 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGI+  +R   S   ++ K+++G     P ++     +A+  +   GF  +GL +D   
Sbjct: 128 IDGIVVPRRGVASIDPLVVKASAGIAFRAPILKTFTAVEAVTALKEAGFHIVGLDADGDD 187

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L      +++A++LG+E  G  P+      +   + M G +++LNVS AAAV  +    
Sbjct: 188 DLFTAHLRERVAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVR 247

Query: 279 H 279
            
Sbjct: 248 R 248


>gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 292

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 94/275 (34%), Gaps = 47/275 (17%)

Query: 50  FLYGVHTVSAALNNPS--------------------RKIFQLLATKNALARLDWDANLPH 89
            + G+  +   L                        R +    A +NA  +         
Sbjct: 2   VISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAAR 61

Query: 90  PFPVKTVP------------------PQTIDKIVGKEAVHQGL-----ALETAPLLSPTL 126
              +                         +  +    A  QG                TL
Sbjct: 62  GIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERTL 121

Query: 127 DA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++VLD + DPHN+GAI+RSA  FS D ++    +    +  + + ++GA
Sbjct: 122 LHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAGA 181

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P +R+ NL      +   GF   G     +    +     K AL+LG EG G+ P 
Sbjct: 182 VAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGART-FPPKTALVLGNEGHGVSPL 240

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +    ++  +   G + +LNVS AA + LY  + 
Sbjct: 241 LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRR 275


>gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 307

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 23/280 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I+    ++I                DY+ +     ++R           G   +  AL 
Sbjct: 43  QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 87

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                   L+  K    R++  A+L     PV    P  + ++ G       LA      
Sbjct: 88  AGYPARSYLVDAK----RVEQLADLDTGDAPVYAAAPDVLRRVTGFHVHRGVLASFRRRR 143

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                D +  ++ +++L+ VN+  N+G+I R+      D ++ +   +        + + 
Sbjct: 144 QPTATDLLATARRVVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 203

Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           G   A+ +       +    ++                     +  +  + AL+LGAEG 
Sbjct: 204 GEVFAVPYAMLGPWPDALAEVRAAGFTVLALTPAPDAVPIQRLEPGQRSRAALLLGAEGS 263

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL  +  E +     + M   + +LNV+ A AVA +    
Sbjct: 264 GLTREAMEASDVRVVIPMRRGVDSLNVAAATAVACWELGR 303


>gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 266

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 7/255 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
               K    + ++    +     + G ++V AA+   S     +  T  A  R       
Sbjct: 15  PRIVKAAKLH-RTAVRRKEGRFIVEGSNSVEAAVATGSATD--VFITAEAAKRFADIVVA 71

Query: 88  PHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                V   P        +          A+    L        R+ +L+ V    NDP 
Sbjct: 72  AGHMQVFVHPITAGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPG 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203
           N G ++R + A   D +I        +S+   ++++G++ H+P  R  ++ + L+  K  
Sbjct: 132 NAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGR 191

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                      +       E+     A + G E  GL P+  E A     + + G  ++L
Sbjct: 192 GLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESL 251

Query: 264 NVSNAAAVALYITQN 278
           N++ AA++ L+ +  
Sbjct: 252 NLATAASICLWESSK 266


>gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 270

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 4/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+M+   +K RH          G+   + A        +  L    A   L    
Sbjct: 12  SNPLVKRMRLLREK-RHRRAEGLFLAEGLRIATEAREAGVFPAWLFLGPDGAAHPLAQAL 70

Query: 86  NL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V       + K+ GK+     + +   P  +        + + +V + + 
Sbjct: 71  VADTMAAGGEVIDTTAAILSKLSGKDNPQTIVGIYAEPATTLAAIDRNAAPIWLVAERLR 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I     +        +++ GA+     ++           
Sbjct: 131 DPGNLGTMLRTGDAVGAGGLILLGDSTDPYGVEAVRASMGAIFTQRLVQARWDAFLPWLR 190

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G        D     +         +++G E +GL       A     + M G   +
Sbjct: 191 SGQGELVATWLGDDSVDYQAVRYAAPTFILVGNESQGLPADYAAAADVRVKMPMLGKADS 250

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + AAAV  Y   N   +
Sbjct: 251 LNAAVAAAVMAYEVLNQRRR 270


>gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032]
 gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter
           turicensis z3032]
          Length = 257

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 13  RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 72

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L    +   ++ L+ V +PHN+GAI+RS  
Sbjct: 73  ELTKASGTE-HHGGVCFLIKKRSGASVEQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 131

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  S  ES    ++A G  EH+  I   + +DAL +  + G+  +  SS 
Sbjct: 132 HFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL +     K+ L+LG E +G+   TQ  A     +   G +++LNVS A  V L  
Sbjct: 191 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 250

Query: 276 TQNH 279
               
Sbjct: 251 WWRQ 254


>gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 292

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y ++     +S    Q           +  AL    + +   L ++     L      
Sbjct: 38  RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALVAGHQPV-SFLMSEKWADDLADVLRA 96

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P      + ++++ G       LA    P   P    ++ +  + +L+ + D  N+
Sbjct: 97  HPDTPAYVGSEEQLEQVTGFHLHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTNV 156

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A + D ++ T R +        + + G +  +P+ R+ +    LQ +H  GF
Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216

Query: 208 QTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ +            +++K+ALILG EG GL P+T         + M   + +LN
Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 277 VAAASAVAFWETR 289


>gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
 gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
          Length = 244

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE------ 108
           +++  ++ N      +L  +K    +      L     ++ +    + KI+G        
Sbjct: 7   NSIIESIKNNKG--LRLYISK-TSPKSINIEKLAKEHKIQIIKVNDLAKIIGNNDHRGFA 63

Query: 109 ------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                   +     +            +N+  +++LD + DP N GAILR++  F+ D +
Sbjct: 64  LKLKTLKSNNTKKQDKNLEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNIDLV 123

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           IT++R S  ++A + +++SGA +++  + + N+ + ++ +   GF         K     
Sbjct: 124 ITSQRRSAKDNATILRTSSGASQYVNKLVVPNINNVIKYLKKNGFWIYASDIKGKAINTT 183

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            I + KIALI+G EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 184 PINDTKIALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 364

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 26/299 (8%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSR 66
           + +K  S       KL       +K Q   QK++  +    +  ++G+     AL+   R
Sbjct: 67  QKKKNGSKVSLELRKLSLEDSPREKWQQLRQKTKVDSRSDSHEIVFGIAPCLLALSQGRR 126

Query: 67  KIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           K F+L       A         +        +  V    +DK+     VHQG+ L+ + L
Sbjct: 127 KAFKLFVKDGEAAERASVLKVCEEAHSRGVQICHVRKNDLDKMS-LGRVHQGVCLQASRL 185

Query: 122 LSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              T                L +VL+ + DP N+GAILRSA     D + ++   S   S
Sbjct: 186 DFLTKTTCNSRGSKDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLS 245

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-------TIGLSSDSKKPLEQEIKN 226
            V++K++SG +E +      +L D L+   + G+Q           +             
Sbjct: 246 PVVSKASSGVMEVMEVYGYESLEDMLRMKVAQGWQVVGSVGTEAEATHIPIIRCSDFHLT 305

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNHFA 281
               L++G EG+GL         ++  +     +   I++LNVS AA + L+       
Sbjct: 306 KPTLLLMGGEGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHSMLQSRK 364


>gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
 gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
          Length = 242

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 91/246 (36%), Gaps = 21/246 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +Q   QK ++ ++     + G  ++   L    R   +LL            A +   
Sbjct: 8   KLIQKLQQK-KYRNELNLFIVEGKKSIVEFLQAGYR--LELLIATEVF------AEVLSH 58

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+  V  + + K+   +   +GLA+         L       +++ LD+V DP N+G +
Sbjct: 59  HPITLVSKEELRKVSALKNPDEGLAIFHQRKHKGIL----QEGIILALDNVQDPGNLGTL 114

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F  + ++   +     +  + ++  G+L  +    +           +     +
Sbjct: 115 IRLCDWFGIETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYVDL-----AGFLATCSLPV 169

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
            +     + L      +   LILG E  G+ P+ +  A     +         ++LNV+ 
Sbjct: 170 YVMDLEGENLYTTEFPEDCVLILGNEANGITPEVRSLANKAITIPRFSKHQQTESLNVAM 229

Query: 268 AAAVAL 273
           A A+ L
Sbjct: 230 AGAIVL 235


>gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 249

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
             +++ +      +  G H V AALNNP R I ++ AT+ ALA  + D       PV   
Sbjct: 3   RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151
               + + V  +A HQG+ +E  PL    L         + + L+VLD V DPHN+GAIL
Sbjct: 57  DVADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAIL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IG
Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+  S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
 gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 5/212 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           IF   + K+     D  + L     +  V  Q +  +   E      A+      +  L+
Sbjct: 4   IFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVLKLLSDTETPQGITAVV----DNKELN 59

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   +++D V DP N+G I+R+A A    G+I TK      +    +S  G++ H+
Sbjct: 60  VENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHV 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P I+ ++L + +  +   GF  +  S ++ K         K  + +G EG G+  +    
Sbjct: 120 PVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEIYNM 178

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + MPG  ++LNVS AA V ++     
Sbjct: 179 ADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 210


>gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 88/247 (35%), Gaps = 9/247 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQ 99
             ++       G   V  A +     + +L AT  A  R              +    P+
Sbjct: 27  FRAKQRLFLAEGPQAVREAADLDGVLV-ELFATGEAAERYGEILAAAGKQGSKITIATPE 85

Query: 100 TIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +  +         + +     +   +  A R  +L+ +L HV DP N G ++R A A  
Sbjct: 86  LLASLSETVTPQGLIGVCRFLDVPLESFLAARAPKLVALLAHVRDPGNAGTVIRCADAAG 145

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I T       +    ++++G+L H+P     +  +A+  + +   + +        
Sbjct: 146 ADLVIVTSESVDVYNPKAVRASAGSLFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGAA 205

Query: 219 PLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+ E            + G E  GL       A     + + G  ++LN++ AAAV LY
Sbjct: 206 DLDDELDAGRLAAPTCWMFGNEAWGLPEALLALADEAVRVPIHGRAESLNLATAAAVCLY 265

Query: 275 ITQN-HF 280
            +     
Sbjct: 266 SSARAQR 272


>gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
          Length = 390

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 15/253 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
            +  +  +  ++ G    + AL    P ++       ++   R    A +    P + V 
Sbjct: 106 RKSRAGAQVHYIEGRRACNEALSLAMPLKRALIQKDVQSPDIRAFEQACIARDIPCEYVS 165

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPH 145
              +D      A HQG+ L T P        V               QL++VLDHV D  
Sbjct: 166 KAALDAASSHGA-HQGVMLVTKPFTYTEFADVLRTIDERAAATSALPQLVVVLDHVVDEG 224

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA +RSA       +I     +        K+++GA+  +P ++++N+  A+ ++ + 
Sbjct: 225 NLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQVANVARAVLELKNH 284

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF  +  +  +++ +        + L++G+E +G+    +++      L   G+I++LNV
Sbjct: 285 GFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFECKLPQRGVIESLNV 344

Query: 266 SNAAAVALYITQN 278
           + AA V  Y    
Sbjct: 345 AQAATVMCYEWLR 357


>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
 gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
          Length = 267

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 25/262 (9%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPP 98
            +   +YG+     AL    RKI+ +           N                V     
Sbjct: 5   EDREIIYGIAPCQLALKADRRKIYHIYVRDPAGTLKPNKSIEHIIFKARKLGIHVLPSDK 64

Query: 99  QTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAIL 151
           + +DK+      + V          L+   LD    +     L + L+ V DP N+GA++
Sbjct: 65  RYLDKLTEGRPHQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLGALI 124

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---- 207
           R+A     + ++   R +   SAV++K+++GA+E  P   + NL+  L  +    +    
Sbjct: 125 RTAALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNIIG 184

Query: 208 ---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGII 260
                      +              L+LG EG G+    +E   S   +      P  I
Sbjct: 185 TVGHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDI 244

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LNVS AA + LY  +    +
Sbjct: 245 DSLNVSVAAGILLYSLRGRLNR 266


>gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638]
 gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
          Length = 365

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 121 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDE 180

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+GA++RS  
Sbjct: 181 ELTKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 239

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ DA+++    G+  +  SS 
Sbjct: 240 HFGVKGVLL-QDAAIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFRKAGYSIVTTSSH 298

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL Q     K+ L+LG E  GL      TA     +   G +++LNVS A  V L  
Sbjct: 299 TGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVSIEGTGKVESLNVSVATGVLLAE 358

Query: 276 TQNH 279
               
Sbjct: 359 WWRQ 362


>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 326

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG+H+V  AL +  R    L   +                 V+ +             +
Sbjct: 88  VYGIHSVLQALESGHRDTHALYVREERAPMDGQRPKKKSAADVRALERIHDLAGSKGVEI 147

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           H         +          S +++VLD ++DP N GAILRSA    C  ++ + R + 
Sbjct: 148 HSTSKWMLNHITGDKPHQSNRSPVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTA 207

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--- 227
             S  +++++ GALE +           L +M +           +              
Sbjct: 208 PLSPAVSRASVGALEVMVANDKLMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSD 267

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQNH 279
                L++G E +GLR   ++    +  +          + +LNVS A+A+ LY   +H
Sbjct: 268 GQPTILVMGNEHRGLRKHIRQCCQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326


>gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 263

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 11/243 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALARLD 82
           +++  K++   N K++   +       G+        AL    R   +    ++   R  
Sbjct: 6   SNQQIKRVIQLNAKAKSRREEGCFVAEGIKLFRETPAALR--DRVFVEASFAEDDQHREI 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLD 139
            +      F V  V  +  +K+       QG+            +   +  +  L++VL+
Sbjct: 64  MEEVRKGSFEV--VEDRVFEKMCD-TRTPQGILTIARMPEYRAEELLGSEGHVPLILVLE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A      GI  + + +      + +S  G++  +P+IR  +L   L
Sbjct: 121 DLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKVIRSTMGSIYRVPFIREEDLCARL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +              +    QE      A ++G EG GL  +    A  +  + M G 
Sbjct: 181 DWLREREVYAYAAHLKGENSYNQEDYRKGTAFLIGNEGNGLSDQLAGKAAHLIRIPMEGQ 240

Query: 260 IKA 262
           +++
Sbjct: 241 VES 243


>gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
 gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
          Length = 232

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 3/228 (1%)

Query: 53  GVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G++ V   L +     K+           +   +        +     +  D   G  A 
Sbjct: 6   GINPVIEILKSQTTIEKLEIYKGINKGHIKQLLELASKRNLKIFYTDKRD-DNSQGVVAY 64

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                           + +++   +++LD + DP N GAI+RS   F   GII   R + 
Sbjct: 65  ISEYDYYIDFSAFLEKELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNV 124

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + KS++GA+EH+  ++++N+ D+++K+  +G+   G  ++ +K   +E    K A
Sbjct: 125 KVTETVVKSSTGAIEHVDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPKKKA 184

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L+LG+EGKG+R + +E+  S+  +H+ G I +LNVS AA + L     
Sbjct: 185 LVLGSEGKGMRKRVRESCDSILKIHLKGEINSLNVSVAAGILLSEMSK 232


>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 320

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 25/283 (8%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKI 68
             A+        +   +   +     +  +            +YG + V  AL    R +
Sbjct: 32  RRAREVAEDARRRGTATRYDRRAIRRERGDGPTIAEGLIGEMVYGTNPVLEALRQNRRTL 91

Query: 69  FQLLAT---KNALARLDWDANLPHPFPVKTVPPQTID-KIVGKEAVHQGLALETAPLLSP 124
           F L                  L     V+       D  +      HQG+ L+   L  P
Sbjct: 92  FALYVQTGEGGGGHGTSEILRLAKELKVEVKSASKHDLNMACDNKPHQGVLLDAEALEIP 151

Query: 125 TLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           T++ +          + + LD V DP N+GA+LRSA     DGI+   + S   +A ++K
Sbjct: 152 TVEELPRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVVCTKNSAPFNATVSK 211

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEG 237
           +++GA+E     R   +   L +    G+  +G ++D +       +      L++G EG
Sbjct: 212 ASAGAMEAQVVHRTGVMHRFLARARDDGWDVVGAAADPRAENIHAFEVAAPTVLVVGNEG 271

Query: 238 KGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYIT 276
            G+R   +     +  +         + +LNVS AA + ++  
Sbjct: 272 VGIRTNVRRACNRLVSIPRGVSATDGVDSLNVSVAAGILIHAL 314


>gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 249

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 86/245 (35%), Gaps = 10/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K  +S   K +         + G  +V   L +   KI +LL T    A+        
Sbjct: 6   TVKFTKSLQNK-KFRRLYNQFIIEGEKSVLEVL-SSDFKIQKLLVTSYFHAKYKELLAPF 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               ++      +D I   ++     A+    +    L      + ++ LD++NDP N+G
Sbjct: 64  SGI-IELAGDTELDSIGSLQSN--DAAIAVCAVNEVLLPETIKGEWVIALDNINDPGNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    II ++  +   +  +  ++ G+   +                     
Sbjct: 121 TIIRIADWYGISKIICSEDTADFYNPKVINASKGSFLRVKVHYTDL-----SAFLKQQRV 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           ++  +    + +      +   L++G E  G+    +   T M  +   G  ++LNV  A
Sbjct: 176 SVYGADLHGENIHTASFKEVGILVMGNEAHGISEGVKACITQMLTIPRFGQAESLNVGIA 235

Query: 269 AAVAL 273
            A+  
Sbjct: 236 TAICC 240


>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
 gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
          Length = 268

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           LIS +++  +  +K  H A                         +++ L G H     + 
Sbjct: 2   LISSRRNPLVNRIKSLHEAV-------------------GRRATDSILLEGTHLFQEIVR 42

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                   +   +      +   NLP    +K V  + +  I       Q   +      
Sbjct: 43  LGLVPNEIVATPQWIQTNNNLIINLPKNNLLKLVTIEVLRAIS---TTKQPDGVIAILPK 99

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                       L+VLDH+ DP N+G ++R+A+A   D +   +   P +  VL  SA  
Sbjct: 100 GQLPLGPIIPNFLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPWQPKVLRASAGA 159

Query: 183 A------LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
                        + + NL                  +   +P  Q        L LG E
Sbjct: 160 TLALPLKRFLEKKLLLQNLQILKGMQRVATRVNKHEVTPFIQPYWQLNWCKPTILFLGNE 219

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL P  +   T    +    ++++LNV  AAA  L      
Sbjct: 220 GSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQ 262


>gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 269

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 6/238 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
                        +  AL+     +  L+  +    +           PV +   + ++K
Sbjct: 27  KNRGLFVAESPKVIRTALDAGYEAVSLLMDERYISGQAADIVERVGDVPVYSAGKKLLEK 86

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           I G +     L           L        + VL+ + +  N+GAI RSA A   D ++
Sbjct: 87  ITGFKLTQGVLCAMKRKSEDTAL--PAEVHRVAVLEDIMNQTNMGAIFRSAAALGVDAVL 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----TIGLSSDSKKP 219
            T   S        + + G +  +P+  I                        +      
Sbjct: 145 LTDGCSDPLFRRTIRVSMGTVFQVPWKFIGKSDSGYIYRLKKEGFLTAAMALRADTVSIE 204

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E   + +K+A++LG EG GL+  T E       + M   + +LNV+ A AVA +  +
Sbjct: 205 DEGLKRAEKLAIVLGTEGDGLKASTIEDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262


>gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 289

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           K S++  +   +   K    +   +   S   K   T      +++G H V AA+ N  R
Sbjct: 6   KSSDRPKTGARTIVTKTPMRNTSKRPDYSRRSKPAGTGDSG--WIWGRHAVLAAVANKRR 63

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +I +L  T+NA        +LP     + V P+ ID  + + AVHQG A     L S ++
Sbjct: 64  EILELKVTRNAAR------DLPDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESV 117

Query: 127 D--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +         L+VLD + DPHN+GA+LRSA AF    +I   R +P     + KSA GA 
Sbjct: 118 NGVIDPTHGALLVLDQITDPHNVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAA 177

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEG 237
           E + ++R++N+ D L +    G   +GL+ +++          + +     + L++G+E 
Sbjct: 178 ERVAHVRVTNIADTLLEFSKAGRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSED 237

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           KGLR +  E    +  + M   +++LNVSN
Sbjct: 238 KGLRQRVAECCDQLVRIPMTDTVESLNVSN 267


>gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 306

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 100/274 (36%), Gaps = 19/274 (6%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    ++       +    ++ E   + G   V  A+++    I  L AT++A AR   
Sbjct: 16  DNPSSARVSRVAALARRSTRTKYERFLVEGPQGVREAVHHACGDILDLYATQDASARYPE 75

Query: 84  DANLPHPFPVKT--VPPQTIDKIVGKE------------AVHQGLALETAPLLSPTLDAV 129
             +      V T  V P  +  +                A         AP ++     +
Sbjct: 76  ILSEARAAGVYTHLVTPAVMAAMSADAQGLLAVVRTQAVARPSAAGGSRAPQVAELKQVL 135

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +++L+ VL    DP N G I+R+A A   D ++  +      +  + +S +G+L H+P 
Sbjct: 136 DSARLVAVLTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRSTAGSLFHLPV 195

Query: 190 IRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +                          +      + +     A  LG E  GL P++   
Sbjct: 196 LWGLGLEEISQAVHGAGLAILAADGRGELNLFESETLLARPTAWWLGNEAHGLSPESLTQ 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
           A ++  + + G  ++LNV+ AAAV  Y +     
Sbjct: 256 ADAVVSIPLYGQAESLNVATAAAVCFYASARVQR 289


>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
 gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
          Length = 246

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 100/277 (36%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +       + R                    +     + G+H +  A
Sbjct: 1   MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGLALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +   +       D           +  +  + + G     QG       
Sbjct: 42  YQSGIEITQLFVIEPDRTDEALLDYANEA----YEINMKVAEALSG-TVTPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                ++A++    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PQYNEIEALQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +     T   +         +  +   K+   Q       AL+LG EG+G+
Sbjct: 153 QGSIFHIPVVIKDLATYITEFEGPVYGTALENAVSFKEIESQSQF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NKDLLQRTTKNLIIPIYGKAESLNVAIAGSILLYQLK 245


>gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M]
 gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M]
          Length = 279

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 25  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKDDLA-G 82

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V P  + ++VG       LA  +  +       V  ++ + VL+ VND  N+G
Sbjct: 83  VGVPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLG 142

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +PY R ++    L  +   GF+
Sbjct: 143 SIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 202

Query: 209 TIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+              + +  +AL++GAEG GL       +     + M     +LN
Sbjct: 203 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 262

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 263 VATAAALAFYERAR 276


>gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 266

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 9/264 (3%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLA 73
           +K      L +     +K    +QK +   +       G+ TV+    N P   +   L 
Sbjct: 1   MKQQEREPLSKE--KLRKYTRLHQK-KQREREGLFLAEGLRTVTELCRNLPDNDMLVALL 57

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNS 132
            +   +     A+      V ++  +   ++           +           +  + +
Sbjct: 58  IRETQSDDSGFAHAFSG-KVFSISDKECLQLAQTTTSQGVFGVFRQQPDPEPFGEGKKGA 116

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++VLD V DP N+G ILR+AV F  DG+I +       +A   +S++G++  IP+  +
Sbjct: 117 SFIVVLDDVQDPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGV 176

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            ++ D L ++ + G+  I  S + K   E   + +K  L++G E  G+  + Q  +  + 
Sbjct: 177 EHVADELNRLKALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLV 236

Query: 253 HLHMPGI---IKALNVSNAAAVAL 273
            +   G    +++LN S +AA+ +
Sbjct: 237 RIPHAGKKARVESLNASVSAAILI 260


>gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM
           22836]
          Length = 250

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 94/253 (37%), Gaps = 17/253 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S  +K ++ ++       G   VS  L        QLL    A       A++ + 
Sbjct: 9   KYIRSLKEK-KYRTEFGTFVAEGHKMVSDLL---PFIKCQLLV---ATPEFLKSADVANV 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  V  + + +    +   Q LA           D   + +L++ LD + DP N+G I
Sbjct: 62  EEVIEVNDRELAQASFLQNPQQVLA--VFYQSENVTDIKIDDELVLALDGIQDPGNMGTI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I  ++      +  + ++  GAL  +            +  H      +
Sbjct: 120 IRLADWYGIHHIFCSQDTVDVYNPKVVQATMGALARVNIHYTDLSDFLTRNKHLS----V 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVS 266
             +    + + ++       +++G EG G+RP+ +   T   ++          ++LNV+
Sbjct: 176 YGTFLDGENMYEKKITSHGIIVMGNEGNGIRPEIERLITEKLYIPNYPVGNPTSESLNVA 235

Query: 267 NAAAVALYITQNH 279
            A A+     +  
Sbjct: 236 IATAIICAEFRRR 248


>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
           propionicus DSM 2032]
          Length = 269

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 17/268 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALA 79
           RR     K  + F        +P    L+G + V   L         +I           
Sbjct: 5   RRESTVTKPARPFAS-----DEPSEDLLWGFNAVWETLQQEGCGGISEILVQKGKAGPRL 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNS 132
           +   D    H   V+ V    +                 A LLS        T +     
Sbjct: 60  QQIIDHAKSHAIAVRFVDGARMGVPKNCRHQGVVARQSEARLLSLEDLLAGITDEEQTTQ 119

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++VLD + DP N+G+ILRSA+A     +I T+  S   +  +A++++GA+ H+   ++
Sbjct: 120 ARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLCQV 179

Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            NL DAL ++   GF   G  ++ +  P+     +  I L++G+EGKG+RP  ++    +
Sbjct: 180 VNLVDALNRLKEQGFWIFGAIAEANAAPIYTTDFSGPICLVIGSEGKGIRPLVRKQCDVL 239

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M     +LN S AAAV ++     
Sbjct: 240 VTIPMQASFNSLNASVAAAVIMFEIARR 267


>gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 232

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 12/226 (5%)

Query: 65  SRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            R I ++   + A     ++       +   ++  P + +D++V  E  HQG+  + A  
Sbjct: 4   GRDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAY 61

Query: 122 LSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               L+               ++LD + DPHN+G+I+R+A A    GII  KR +   +A
Sbjct: 62  QYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTA 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +AK+++GA+E+IP  R++NL+  +  +   G    G  +  K        N  I L++G
Sbjct: 122 AVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWIAGTDARGKTDYRNLDGNMPIGLVIG 181

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +EGKG+     E    + +L M G + +LN S AA++ +Y      
Sbjct: 182 SEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYRKR 227


>gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
 gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
          Length = 237

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +YG + V  A+      +++     +N L R             + +P   +D+ V + 
Sbjct: 2   LIYGRNPVLEAIKEGRAVRVWVAKGVENWLIRELEGL----GADYELLPRIELDQKV-RT 56

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQGL  E A L     +         +   LL++LD V DP N GAI+R+AVA    G
Sbjct: 57  TQHQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I+ +R S   S ++ K+++G    +P +++ NL   ++++   G    G S  ++K L 
Sbjct: 117 VISEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLT 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +A+++G+EG+G+R   ++     A + +    ++LN S A A+ LY  +
Sbjct: 177 MLDYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232


>gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 328

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 91/302 (30%), Gaps = 53/302 (17%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----- 81
           +   + ++   +  R   +     L G H + + L    + + QL+  +    +L     
Sbjct: 27  NPRLRHLRELLESGRERRRSGQTVLEGWHLLESWL-AGGQPVLQLVLPRRTFQQLGQGGE 85

Query: 82  -------------------------------------------DWDANLPHPFPVKTVPP 98
                                                                    +  
Sbjct: 86  PSSPASRREHGRSPSANPWQRVSPQRQPGAPIPSGNVASMNGNPEMVAQAAQASWLVLDD 145

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              D++    +      L       P L A      L++LD + DP N+G ILR+A A  
Sbjct: 146 WLFDQLDIMPSPS--PLLAVVETPRPALPASAPDHDLVILDRIQDPGNVGTILRTAAAAG 203

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++TT   +   +  + ++  G   H       N+     K         G      +
Sbjct: 204 IRTVLTTAGTAACWAPKVLRAGMGG--HFVLEIHENIPLEQLKAQVGALPLAGTVLQDGQ 261

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        +A + G EG+G+ P+ Q        +     +++LNV+ +AAV L+  + 
Sbjct: 262 SLYASDLRQPLAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNVAASAAVCLFEQRR 321

Query: 279 HF 280
             
Sbjct: 322 QR 323


>gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 253

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95
           K    +  +  F+YG +   AAL   +++I ++      ++ +              ++ 
Sbjct: 2   KREQETPNQTEFVYGHYASVAALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKRGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D         + +   ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+E++P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G     +     + K    AL++G EGKG+ P  ++    M  + M G +++LN S A
Sbjct: 180 IFGTDMAGEDYRRWDAK-GATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVA 238

Query: 269 AAVALYITQNHFA 281
           A++ +Y   +   
Sbjct: 239 ASLLIYQGFSSRN 251


>gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii]
          Length = 258

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 90/256 (35%), Gaps = 7/256 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K++Q   Q +    +P    L GVH   A L       + +        +   
Sbjct: 6   SRDNPQFKQLQRLAQHAGRRGEPA--ILEGVHLCQAWLAEAGPPAWAVF--DAGRVQQPE 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A L    P +         +   E V  G  +             R  + ++ LD V D
Sbjct: 62  LAALLAAVPPRQALLLESRLLRHLETVETGQGVLFVVDPPTPALPARLDEPMVWLDRVQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR   A     ++ +   + + S  + +   GA      + +    D      
Sbjct: 122 PGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQGAHF---ALALHEHADLQACAQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    + +  + L         A + G EG+G+ P  Q+ A     +     +++L
Sbjct: 179 RLEIPLAATTLEGAQDLYATRLPPACAWVFGHEGQGVAPALQQAAALRVRIDHAPAVESL 238

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ L+  +  
Sbjct: 239 NVAVAAALCLFEQRRQ 254


>gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
 gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
          Length = 261

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 11/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQT 100
            + +   LYG + V A L +  R+  ++   K   +       D       P++ +  + 
Sbjct: 6   QKEQEDLLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKG 65

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +++++    VHQG+A  TA +    L              L++VLDH+ DPHN GAI+RS
Sbjct: 66  LERML-PGKVHQGVAARTAGVELLELREVLARIPPAPEPVLVVVLDHLEDPHNAGAIVRS 124

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A      +   R     +  + K+++GA   +P  RI N+   L+ +   G   +GL 
Sbjct: 125 AEAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLE 184

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  ++ L +   + ++AL++G+EGKGL   T +    + H+ M G   +LN S AAA+ L
Sbjct: 185 AQGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGL 244

Query: 274 YITQN 278
           Y    
Sbjct: 245 YEWFR 249


>gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003]
 gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus
           SB 1003]
          Length = 264

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 10/227 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--GK 107
           +L+G+H V  AL NP+R   +L+ TKNA  +L            + V P+  D  V  G 
Sbjct: 23  WLFGLHAVRDALMNPARVKLRLVLTKNAADKLAEAIA-AGGLAPEIVDPRKFDAHVPLGP 81

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + VHQG ALE  PL    L  V  +     L+++LD V DPHN+GAILRSA  F    ++
Sbjct: 82  DQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARAVV 141

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
              R+S  E+  LAK+ASGALE  PY+R++NL++A+  +   G+  IGL+ +++  L + 
Sbjct: 142 APARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLAEG 201

Query: 223 --EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             E+    +A++LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 202 LAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248


>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 246

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 18/248 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +  +K +     K ++  + +   +     V  A+ +    I  +   +          
Sbjct: 7   QNPKFKLINKLRNK-KYRDKEDLFVIESKKLVEEAIKSSLD-IEFIFIREG--------L 56

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +L   FP+        +K+  +     G            + + R    +++LDH+NDP 
Sbjct: 57  DLACNFPLVVFDESLFNKLS-ELKSPDGFGAVVRKKKEEEISSNR----VLLLDHINDPG 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA AF  + II T+      +    +++ G++  +  +++SN      K    
Sbjct: 112 NMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVKLSNDEIVNLKSRYK 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +     D +K        + I L +G E  GL    +    S   + M G I++LN 
Sbjct: 172 FLASHMEGCDVRKYDASL---ENIILAIGNEANGLSDFLRSLTDSFVKIAMQGKIESLNA 228

Query: 266 SNAAAVAL 273
           + AA++ +
Sbjct: 229 AIAASIMM 236


>gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
          Length = 265

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 81/260 (31%), Gaps = 7/260 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +++   K+  +   K     +     + G   +  AL           +T  +    ++ 
Sbjct: 6   KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRTGYLCQHVFCSTHLSEKEKEFL 63

Query: 85  ANLPHP-FPVKTVPPQTIDKIV---GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
             L      +      T+ ++      ++    +           +         ++++ 
Sbjct: 64  YELKRNSTKILYCLDSTLAQLSFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIEQ 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V  P N+GAILR A     DG+I         +  + +S+ GA+  +P + IS       
Sbjct: 124 VEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKEL 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +           +       AL+ G+E  GL         S   L M G  
Sbjct: 184 FKQEGWTVFVTSPRAETMYFSKNYL-GPTALVFGSEKDGLTEDWFSEDFSEIALPMLGES 242

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ + A   Y      
Sbjct: 243 DSLNLATSVAAVAYEVVRQR 262


>gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 256

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 10/247 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPH 89
           ++   ++K ++          G+ TVS  L++      +  L+  + A  +LD       
Sbjct: 4   RLAKLSRK-KYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAG 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V         ++    +                         ++ LD V DP N+G 
Sbjct: 63  --KVWLGDADAFKRLAQTASPQ--GVCAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGT 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A  F  + +I     +   +A   +S +G++  +  I + +L   L+++ + GF  
Sbjct: 119 IIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTV 178

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266
              + D +         D+ AL++G E  G+  K    A S   +   G    +++LN S
Sbjct: 179 AAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNAS 238

Query: 267 NAAAVAL 273
            +A + +
Sbjct: 239 VSAGILM 245


>gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 296

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 18/278 (6%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +++ +     +++   K+ +SF +K  +T   +   + G H +   + + +    ++L T
Sbjct: 12  IENIYPKITSKSNALVKRFRSF-KKGSNTKDKDYFCIEGTHLIEEIIKSGNYP-SKILTT 69

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           +  L + +  +    P  +  V  + +   V       G+A           +       
Sbjct: 70  EKWLYKNEELSQKFDPSLIIVVSEEVLASAVS-TKNPDGVAALVQSSSILNFEINNEDDF 128

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-------------SESAVLAKSAS 181
           ++VLD + DP N+G + R+A+A   + ++     +P                        
Sbjct: 129 MLVLDRIQDPGNMGNLFRTALAAGVNKVLLAGGANPLGQKVLRASSGSVFHLPFKRFDGG 188

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                   +   +                     S+KP  +   +   ALILG EG G+ 
Sbjct: 189 EEEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNGIH 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
            + QE  T    +    ++++LNV+  A  + L   + 
Sbjct: 249 ERIQEAFTETITIPHSELVESLNVACVAVPLLL-ERKR 285


>gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
 gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
          Length = 291

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 89/294 (30%), Gaps = 30/294 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ IS  + E I S          R +   K+++S   ++    + + + L G H V   
Sbjct: 1   MSAISGAEGEPISS----------RRNPLIKRIRSLQSRT-GREKEQCVLLEGTHQVQEL 49

Query: 61  LNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L         +  L             A LP P  ++ +  + +   +          + 
Sbjct: 50  LAQALPWTDPLQVLATPLWFQNHQALLAGLPGPVQLQLMSSEALGAALSTVHP---DGVA 106

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS------ 171
                +           ++ LD + DP N+G +LR+A+A   + +       P       
Sbjct: 107 CLWPFNRLPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSKVVR 166

Query: 172 -------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                     +     + A                             +    +P  Q  
Sbjct: 167 SAAGAILTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQVEPYWQLD 226

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 L+LG EG GL P+     +    L     +++LNV+ AA   L   + 
Sbjct: 227 WCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVAAAAVPLLLERRR 280


>gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1]
          Length = 233

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 11/231 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
              L N  + I +L  +K+               +   V+ V  Q +D++      HQG+
Sbjct: 1   METLENN-QTINKLYLSKSLAKNRAQQFRQTAEQNKIVVQEVDNQRLDELTNH-GNHQGI 58

Query: 115 ALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  A      LD +      +   L++LD + DPHN+G+ILR+A A   DGII  KR +
Sbjct: 59  ALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              + V+AK+++GA+EH+P  R+ N+ + + K+    F   G         +    +  +
Sbjct: 119 VQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANFWIFGTDMKGTDYTDWN-ADGPV 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A+++G EGKG+  +T++    M  + M G +++LN S AAA+ +Y   N  
Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFNSR 228


>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 329

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 29/296 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  + ++ TS+ ++L + G + V  AL   
Sbjct: 23  TPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEALRCG 81

Query: 65  SRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        H   +       +D+I  + + HQG+ L+  P
Sbjct: 82  -VPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKAQP 139

Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L                       +    L + LD V DP N+GA++RSA AF  
Sbjct: 140 FQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 199

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       
Sbjct: 200 NGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDAL 259

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +     D + ++LG+EG GL    +E   S+A + M  ++++LN S AA + LY
Sbjct: 260 VGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315


>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
 gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
          Length = 330

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 129/296 (43%), Gaps = 29/296 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  + ++ TS+ ++L + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEALRCG 83

Query: 65  SRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        H   +       +D+I  + + HQG+ L+  P
Sbjct: 84  -VPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKAQP 141

Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L                       +    L + LD V DP N+GA++RSA AF  
Sbjct: 142 FQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 201

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       
Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDAL 261

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +     D + ++LG+EG GL    +E   S+A + M  ++++LN S AA + LY
Sbjct: 262 VGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 260

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H  SAAL    +    +     +  R   
Sbjct: 10  SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAVAVF--SESFWRQAP 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +   +        +        +  LD        +VLD + D
Sbjct: 68  AEYARAAIK-NVVIADVLWSDISALESPAPMGFVLPLPEAEGLD---GRMPTVVLDRLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    +   K  +   S  + ++  GA              A   + 
Sbjct: 124 AGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHF----ALRLVEGLAPADID 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     L +         I+G EG+G+ P  Q+ A     +  PG  ++L
Sbjct: 180 RLEVPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEESL 239

Query: 264 NVSNAAAVALYITQ 277
           NV  AAA+ L+ + 
Sbjct: 240 NVGAAAAICLHASA 253


>gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 277

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 104/253 (41%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +       LL T   LA L  D     
Sbjct: 24  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLAS-RFTAHALLGTDRRLAELAGDLA-GR 81

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + ++VG       LA             V  ++ + VL+ VND  N+G+
Sbjct: 82  AVPFYRTSAEVMAQVVGFHLNRGVLAAARRVPEPTVAGLVEGARTVAVLEGVNDHENLGS 141

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D ++     +        + + G    +PY R ++    L+ +   GF+ 
Sbjct: 142 IFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKMLKQKGFRV 201

Query: 210 IGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++ DS            ++++IA+++GAEG GL P T   + +   + M     +LNV
Sbjct: 202 LAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNV 261

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 262 ATAAALAFYERAR 274


>gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 293

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 93/277 (33%), Gaps = 28/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +++               +  AL      +  L+  +      D  A +  
Sbjct: 17  YVNLTELQLRNKLEPSKGLFIAESPKVIDRALAAGREPLSLLVEEQWIDGMGDEFAFIDE 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV      T+ K+ G       LA      L    D  RN+  + VL++V D  
Sbjct: 77  HWGPDIPVYIGSEATLHKLTGYRLHRGALAAMRRWPLPSVEDVCRNATRVAVLENVVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A   D ++ T   +       A+ + G +  +P+ RI    D        
Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKHA 196

Query: 206 GFQTIGLSSDSKKPLEQEI------------------------KNDKIALILGAEGKGLR 241
             +               +                          DK+ALI G EG GL 
Sbjct: 197 WPEAGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             T   A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 257 HTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYATRK 293


>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
 gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
          Length = 386

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVP--P 98
                +  + G + V  AL         L      +   R+     L     +  V    
Sbjct: 134 RRVETDELVVGRNAVVEALRAG-VPATTLYIAGGLDFDERIADARRLAGRAGLAVVDIGR 192

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILR 152
             +D++ G  A HQGLAL   P      D            L++ LD V DP N+GA++R
Sbjct: 193 FELDRLCG-TAPHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVR 251

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL
Sbjct: 252 SAAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGL 311

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++D +  L++     D + L++G+EGKGL     E       + M G +++LN   A  +
Sbjct: 312 AADGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGI 371

Query: 272 ALYIT 276
           AL   
Sbjct: 372 ALSEI 376


>gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 249

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
             +++ +      +  G H V AALNNP R I ++ AT+ ALA  + D       PV   
Sbjct: 3   RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151
               + + V  +A HQG+ +E  PL    L         + + L+VLD V DPHN+GAIL
Sbjct: 57  DVADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAIL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IG
Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+  S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 249

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
             +++ +      +  G H V AALNNP R I ++ AT+ ALA  + D       PV   
Sbjct: 3   RSRNKASPSHPRFW--GRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLS 56

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAIL 151
               + + V  +A HQG+ +E  PL    L         + + L+VLD V DPHN+GAIL
Sbjct: 57  DVADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAIL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IG
Sbjct: 117 RSAAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIG 176

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+  S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 177 LTGHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL2A]
          Length = 278

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 19/272 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   +K++   +K+    +  +L L G H +  AL         +   +      + 
Sbjct: 4   SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  V    ++  +         A+     L  +  A ++   ++ LD + D
Sbjct: 63  LKKIASRTLLTLVTKNVLETSLSTVTPDGVAAIFPMQGLPKSGKAPKH---ILALDRIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---------- 193
           P N+G + RSA+A   + +       P    VL  SA   L                   
Sbjct: 120 PGNLGNLFRSALAGEYEAMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLV 179

Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              N+                ++    KP  +   +    L+LG EG G+    +   T 
Sbjct: 180 SKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTD 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              L    ++ +LNV++AA   L        K
Sbjct: 240 FVTLPHSSLVDSLNVASAAVPLLLE--RQRVK 269


>gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
 gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 94/262 (35%), Gaps = 23/262 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKT 95
           ++   +           +  AL+     +  L+         +    L        P+ T
Sbjct: 28  NKDNPEAGLFIEESPKVIGRALDAGYIPVSALVEKHQMKENEETRQILERFEGSDVPIFT 87

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              + + K+ G +     L       L    D       +++L++V +P N+GAI RSA 
Sbjct: 88  AEFEVLTKLTGFKLTRGMLCAMKRKPLLNYQDMCAGKDRIVILENVMNPTNVGAIFRSAA 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A + D +  T   S       ++ + G +  IP+  I +  +   +      +       
Sbjct: 148 ALNMDAVFLTPGCSDPLYRRASRVSMGTVFQIPWTFIQDNNEMRCQREILWPRQAITELR 207

Query: 216 SKKP---------------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                                + ++ +K+A+ILG EG+GL  +T E       + M   +
Sbjct: 208 EMGYKTAALALTDDSVGIDNPELMQEEKLAIILGTEGEGLMDRTIEMCDYTVKIPMSHDV 267

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LNV+ A+AVA +       K
Sbjct: 268 DSLNVAAASAVAFW----QLGK 285


>gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 344

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG H   A   +    I +    ++   R          +     TV   
Sbjct: 101 RRQRMEETRVYGEHACQALFQSRPESIVRAWFVQSVTPRFRDALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G I+RS   
Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRSCAH 220

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS  
Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRKAGYTIVTTSSHQ 279

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL +     K+ L+LG E  GL   T E       +   G +++LNVS A  V L   
Sbjct: 280 GIPLAKAELPAKMVLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLLAEW 339

Query: 277 QNH 279
              
Sbjct: 340 WRQ 342


>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 261

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 6/238 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWD 84
            +   K+M+   Q  +H  Q   L L G H + +A       +I        A     W 
Sbjct: 6   QNPLIKQMRKLQQ-VKHRRQQGKLLLEGTHLLQSAWEQNWSFEIVCYTDRWQAKYPQIWQ 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   ++ V P+ + +         G+    +   +P+L       L + L+ + DP
Sbjct: 65  QIQDRTTRLERVSPEVL-QATATTVHPDGVVAVISRPATPSL---PIQTLGLALETIQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R++VA   +G++  ++ +  ES  + ++++GA  H+P          LQ    
Sbjct: 121 GNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGAWFHLPQRATDKFVTVLQTYKQ 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            G Q I    D+     Q        +++G EG GL     + A    ++ +   +++
Sbjct: 181 QGMQLIATVPDASHTFWQVDYRQPTLILIGNEGAGLSQPVLDLADHQVNIPIAPGVES 238


>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 268

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 10/251 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH 89
           ++     +K ++  Q       G+ TV     N P   +   L  +     L     +P 
Sbjct: 15  RRFVKLQEK-KYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIPE 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
              +  +  +    +    A    +      + +       D  +   LL+ LD V DP 
Sbjct: 74  D-KLYVMNSEQCSLLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQDPG 132

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A  F  D +I +   +   +A + +S++G+L  +P+  +  L  AL+++ + 
Sbjct: 133 NVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPHYTVERLDLALEELAAS 192

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKA 262
           G+  I  S D +          K  L++G E  G+    Q  A  +  +   G    +++
Sbjct: 193 GYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVRIPHGGGKSRVES 252

Query: 263 LNVSNAAAVAL 273
           LN S +AA+ +
Sbjct: 253 LNASVSAAILM 263


>gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1]
          Length = 305

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 10/253 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVK 94
           ++S     P +   +G   V   + N   +  +LL   N          D         +
Sbjct: 46  RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            V P+ +DK+   E  HQG+A      +   L+            L++VLDHV DPHN+G
Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA A      + ++R S      + K+++GA   +P I + N+   L ++ + GF 
Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T+GL   +   L ++    ++AL++GAEG+GL     E+   +  + + G + +LN S A
Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284

Query: 269 AAVALYITQNHFA 281
           AA  ++      A
Sbjct: 285 AAFGMFEWSRTRA 297


>gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 269

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 10/254 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDAN 86
              +K    +QK +   Q       G+ TV    LN PS ++   L  +   A +     
Sbjct: 12  AKLQKYVKLHQK-KFRDQERLFLAEGLRTVRELCLNLPSEEMLVALLVREGEAEVARF-A 69

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVN 142
            P    + ++  +   ++           +             + A  +  L++ LD V 
Sbjct: 70  QPWKGKLFSIGEKECAQLSETATSQGIFGVFRQQRPVEPAAEAVSATSDKSLIVALDDVQ 129

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+AV F  D +I +   +   +A   +S +G++  I +  +  L   L   
Sbjct: 130 DPGNVGTILRTAVWFGADALICSTGTADRYNAKAVRSCAGSIYAIRHYGVDRLERELLWF 189

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---I 259
              G+     S + K   E      K  L++G E  G+    +  A  +  +   G    
Sbjct: 190 KKQGYSITSSSLEGKDFREFSSWPAKQVLVIGNEANGISEPVKALADRLVRIPHSGRSVR 249

Query: 260 IKALNVSNAAAVAL 273
           +++LN + +AA+ +
Sbjct: 250 VESLNAAVSAAILM 263


>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 261

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 4/242 (1%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
               +             G   V+ AL +P+     L     A A    D     P PV+
Sbjct: 15  RKLTRRAGRDAAGLFLAEGRQAVAEALADPAGVREVL--ATEAAAAAHRDLLAAAPVPVR 72

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +    +         +A+     +   +       L + L  + DP N G +LR+A
Sbjct: 73  LVTDKAAAALSETVTPQGLVAVCALRDVPTDVLVDAPPSLTVALAELADPGNAGTVLRTA 132

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGL 212
            A     ++     +        +S++G+L H+  +R + L +     +           
Sbjct: 133 DACGAGAVVFGAGSADPYGGKAVRSSAGSLFHVDVVRGAPLPELLPRLRAAGVTVLAADG 192

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             ++            +  + G E +G+       A +   + M G  ++LN++ AAA+ 
Sbjct: 193 GGEAALDELGPELAGPVLWLFGNEARGVPAALAALADARVRIPMRGRAESLNLAAAAAIC 252

Query: 273 LY 274
           LY
Sbjct: 253 LY 254


>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
 gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
          Length = 332

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 127/304 (41%), Gaps = 28/304 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84

Query: 65  SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        +   +       +D+I  +   HQG+ L+  P
Sbjct: 85  -VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDP 142

Query: 121 LLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L                       +    L + LD V DP N+GA++RSA AF  
Sbjct: 143 FQYSSLRELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 202

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+  +GL     K 
Sbjct: 203 NGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKAIEGLKERGYYVVGLDGGGDKL 262

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +     D + ++LG+EG GL    +E+  ++A + +   +++LN S AA ++LY    
Sbjct: 263 VGETGFETDPLVVVLGSEGSGLSRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSR 322

Query: 279 HFAK 282
              +
Sbjct: 323 ARRE 326


>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 274

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 12/265 (4%)

Query: 24  RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKI----FQLLATK 75
            +++  +K+++       +  +         L G+H V   L +P  KI       L   
Sbjct: 8   SKDNALFKEVRLLQATGSKGQKARLACGQALLEGIHLVQTWLGDPGLKILFTSEVGLKNS 67

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQ 133
                +     +     V  +     D +          GL       L+P+      + 
Sbjct: 68  EIAQAVYSHLEICPDTKVYQLDSALWDLLSELVNAPHLAGLLDLPKSSLAPSQSIATLAG 127

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD V D  N+G+ILR+A A     ++     +   S  + ++  GA   +  +   
Sbjct: 128 DVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGAH-RLLDLYEG 186

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                +    +         +       +      +A ++G+EG+G+       A     
Sbjct: 187 WSNQQVLSAVTAPLLAATADAKCDLFSLKNDLLHPVAWVMGSEGQGVSEDLLAQAKG-IS 245

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + +   +++LNVS AAA+ L+ T  
Sbjct: 246 IPIDPRVESLNVSTAAAICLFETVR 270


>gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 265

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRLEPDKGLFIAESPKVIKVALDAGYEPLAFLCEHKHIYGDAAEIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G +  +P+  +    D L ++       
Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +             ++A+++G EG GL  +    A  +  + M   + +LNV
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252


>gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 271

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 13/266 (4%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I ++ +++  +LR  H    + +    +       +     G  T+SA L++       L
Sbjct: 5   IITIDETNDPRLRDYHNI--REKDLVGR------QQQFIAEGKITLSALLHSKEFSALSL 56

Query: 72  LATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLD 127
           L     L  L        P  P+  VP + +D I G             +T P L   L 
Sbjct: 57  LIVAKRLPGLLPLLEKTQPPCPIYCVPQKVMDDITGFHVHRGILGIGKRKTLPSLQSFLK 116

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L++VL  +++  N+G+I R+A AF+  GII  K           + ++GA   +
Sbjct: 117 NLPEKALILVLCGISNHDNMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKV 176

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           PY + +++ D +  +H   F    LS  +   L Q  K  + ALI G EG GL P   + 
Sbjct: 177 PYTQNADINDIIAALHDENFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQ 236

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           +T+   + M     +LNV+ A+ +AL
Sbjct: 237 STA-LRIPMTDGFDSLNVATASGIAL 261


>gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 321

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 96/280 (34%), Gaps = 23/280 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I+    ++I                DY+ +     ++R           G   +  AL 
Sbjct: 57  QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 101

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                   L+  K    R++  A+L     PV    P  + +I G       LA      
Sbjct: 102 AGYPARSYLVDAK----RVEQIADLHTGEAPVYAATPDVLRQITGFHVHRGVLASFRRQR 157

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                + +  ++ +++L+ VN+  N+G+I R+      D ++ +   +        + + 
Sbjct: 158 QPTAAEVLGTARRVVILEDVNNHTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSM 217

Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           G   A+ +       +    ++                     +  +  + AL+LGAEG 
Sbjct: 218 GEVFAVPYATLGPWPDALAEVRAAGFSVLALTPAPDAVPIQRLEPGQRARAALLLGAEGS 277

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL  +  E +     + M   + +LNV+ A AVA +    
Sbjct: 278 GLTREAMEASDVRLVIPMRRSVDSLNVAAATAVACWELGR 317


>gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
          Length = 253

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 10/234 (4%)

Query: 53  GVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEA 109
           G + V   L          +     A  RL             +  +    +D++     
Sbjct: 3   GRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTANH- 61

Query: 110 VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +HQG+AL+  P      D        +   LL+ LD+++DP N+GAI+RS  AF   G++
Sbjct: 62  LHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVL 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+  
Sbjct: 122 IPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDDV 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              D + +++G+EGKGL    ++    +  + M    ++LN S AA V L    
Sbjct: 182 DGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIA 235


>gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
           ED99]
          Length = 248

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 107/277 (38%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI                      +  +K +   +     L G H +  A
Sbjct: 1   MEAITSIQNPKIK-------------------NYNKLKKKKERDKQGLAILEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +   K+ QL   + +    +          V  +  +  + + G              
Sbjct: 42  VES-QIKVTQLFMIEPSRVPTELIEAAE---EVYEITQKVAETLSGTVTPQG-----IFA 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           ++      V  ++ +++LD + DP N+G ++R+A A   D I+ TK  +      + +++
Sbjct: 93  IIEKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP   + +++  +       + T    +      +   + D  ALILG EG+G+
Sbjct: 153 QGSVFHIPIQYVDDMSAWMSSFKGPIYGTALQDA--TTYHQVASQQDTFALILGNEGEGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   T    + + G  ++LNV+ AA V ++  +
Sbjct: 211 AMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLMFYLK 247


>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
           carolinensis]
          Length = 406

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 89/324 (27%), Gaps = 62/324 (19%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  Y K     +   K+ +  +      +   + L G   +  AL   +       ++  
Sbjct: 72  EPRYEKAGPGDKRLSKVVTLAKSRAFREKHGKILLEGRRLILDALEAGAAPQTLFFSSTE 131

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNS 132
            L  L   A       +  V  + +                   + A +  P +      
Sbjct: 132 HLKELP--AAKLRGASLIKVNSKDLKDWSDVVTSQGAIGIFSRPDHAKMTYPEVPEEHQL 189

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ D++ DP N+G ILRSA    C  ++  K    +    + ++  GA   +P +  
Sbjct: 190 PLSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLPIVSN 249

Query: 193 SNL----------------------------------------------------TDALQ 200
                                                                       
Sbjct: 250 LEWDLVPNYLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHGWVSRSSGLKPWADWD 309

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHM 256
           +      +     +   +       +  +A+++G E  G+  +    A         + +
Sbjct: 310 RDLDSQEEGEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAMRLAQDTGGRRLLIPI 369

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              + +LN + AA++ L+  +   
Sbjct: 370 APGVDSLNAAMAASILLFEAKRQL 393


>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
          Length = 1306

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 98/287 (34%), Gaps = 26/287 (9%)

Query: 18   SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70
            SH   +   ++   K        S +     +  + G   +            R +    
Sbjct: 1008 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 1067

Query: 71   LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
            LL    A      D        V ++  + +  +   E+V     +          D   
Sbjct: 1068 LLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDDTY 1127

Query: 128  ------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                    ++   ++VLD + DP N+G +LRSA+AF   G+          +    +++ 
Sbjct: 1128 EKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASR 1187

Query: 182  GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------KIALI 232
            GA   +P +  S +     K         G    ++K       +           + L+
Sbjct: 1188 GASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLV 1247

Query: 233  LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            LG+EG GL  K+ +    +  + M G  ++LNVS A  + LY+ Q  
Sbjct: 1248 LGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 1293


>gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
 gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
          Length = 267

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 85/236 (36%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  AL+     +  L   K+         +   
Sbjct: 17  FSTLTEAQLRNRIEPDKGLFIAESPKVIRVALDAGYEPLALLCEQKHITGDAADIISRCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      D  R+++ ++V+D V D  NIGA
Sbjct: 77  DVPVYTGGRELLATLTGYVLTRGVLCAMRRPAPRTVEDTCRDARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G++  +P+  +      L +        
Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +             ++A+++G EG+GL P T   A  +  + M   + +LNV
Sbjct: 197 ALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNV 252


>gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
 gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
          Length = 292

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDA 85
           Y  +     ++R               +  AL      +  L+         +     D 
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAAGREPLSLLVEEPWLEGMTETFDFIDD 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L       L    +  ++++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKDARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   +   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     +K+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIEKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 268

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 14  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKEDLA-G 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V P  + ++VG       LA  +  +       V  ++ + VL+ VND  N+ 
Sbjct: 72  VGAPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLS 131

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A       +I     +        + + G    +PY R ++    L  +   GF+
Sbjct: 132 SIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 191

Query: 209 TIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+              + +  +AL++GAEG GL       +     + M     +LN
Sbjct: 192 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 251

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 252 VATAAALAFYERAR 265


>gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 361

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +     ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L+LG E  GL      ++     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
 gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
          Length = 361

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +     ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L+LG E  GL      ++     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 290

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 20/271 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----AN 86
           ++            P          +  AL    R    L+  K     L         N
Sbjct: 20  RLNEAQLFHAFEPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAIN 79

Query: 87  LPHPF---PVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMV 137
                   P+  V  + + ++ G    + +G       +  P+LD        +   + +
Sbjct: 80  QTRGLEQTPIYVVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLDNFLATMPSDHPRIAI 139

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V +P NIGAI RSA A   DG+I T   +       ++ A G +  +P+  +     
Sbjct: 140 LESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKAW 199

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSM 251
             + +          ++ + +    +I +      D++A+ILG+EG GLR +T   +   
Sbjct: 200 RSEGIDLLHRFGYKTAAMALRHNTVDIDDPQLAEADRLAIILGSEGPGLREETITQSDFT 259

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M   + +LNV+ A+A+A +   N   K
Sbjct: 260 IKIPMAAGVDSLNVAAASALAFWELGNRKVK 290


>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
 gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
          Length = 246

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI                    + +  +K +   +     + G+H +  A
Sbjct: 1   MEQITSTQNNKIK-------------------LANKLKKKKERDKTGLALIEGIHLIDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +           +           +  +  + + G              
Sbjct: 42  FKSNIMIKQLFVIEPERTDSRLLEYAKEA----YEINMKVAESLSGTITPQ--GFFAVIE 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +   +    +++LD + DP N+G ++R+A A   D ++  K  + +    + +++
Sbjct: 96  KPKHDISKAKQ---VLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +         Q         +  +   K    Q+I     AL+LG EG+G+
Sbjct: 153 QGSVFHIPIVTTELNKFIEQFDGPVYGTALENAVSYKNIESQDIF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +     +    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 255

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 27/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I+  ++  I  +K     K                   +  + +     G       
Sbjct: 1   MDYINSLENSTIKKIKKLKIKK-------------------YREEEQLFIAEGRK----F 37

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+ P      +      +                 V  +   ++  +E            
Sbjct: 38  LDFPFEPEIIIFRESYEITEEIQLKLKKFQCRKIVVSEKVFTQLTSQENSQGV----III 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                       + ++VLD + DP N+G I+R A A     I+ TK      +  + +S+
Sbjct: 94  YPYIKGALENLQKNVVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRSS 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++  I +                 +     +     Q    +K A++ G+EG G+
Sbjct: 154 MGSIFNMNIIYMEEEELIALLKKEEYKIVVTALEKNSVSYTQMKLAEKNAIVFGSEGDGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +       + + GI ++LNV+ A+ + LY
Sbjct: 214 SQNFLKVCDEKIIIPIYGIAESLNVAMASGIILY 247


>gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 278

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 19/272 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   +K++   +K+    +  +L L G H +  AL         +   +      + 
Sbjct: 4   SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  V    ++  +          +     L  +  A ++   ++ LD + D
Sbjct: 63  LKKIASRTLLTLVNKNVLETSLSTVTPDGVATIFPMQGLPKSGKAPKH---ILALDRIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---------- 193
           P N+G + RS +A   + +       P    VL  SA   L                   
Sbjct: 120 PGNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLV 179

Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              N+                ++    KP  +   +    L+LG EG G+    +   T 
Sbjct: 180 SKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTD 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              L    ++ +LNV++AA   L        K
Sbjct: 240 FVTLPHSSLVDSLNVASAAVPLLLE--RQRVK 269


>gi|149187261|ref|ZP_01865559.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148838797|gb|EDL55736.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 246

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 90/252 (35%), Gaps = 14/252 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++ +QK +         + G   V   L   S  I  + AT      L  +      
Sbjct: 8   KLLRALSQK-KQRKAHGLFLVEGEKNVLELLET-SMVIKHVFATSEF---LASNREALQR 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                   + + K     + +  +A+   P      +      +++ LD V+DP N+G I
Sbjct: 63  VECIEASLEELTKASSLVSNNAAVAVVAIPQT----EIPAAKGMMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +    ++  G+   +    +   +   Q         +
Sbjct: 119 IRIADWYGIKHIVASTDCADPYNPKTIRATMGSFGRVQVTLLDLPSYLEQASLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +  K        + +  L++G+E  G+RP   +  T    +   G  ++LNV+ A  
Sbjct: 179 EGENVHKMT-----FSPEGILLMGSESHGVRPDAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNHFAK 282
           + L   +   ++
Sbjct: 234 IILDNFRRQHSE 245


>gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 237

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YGV+ V+ AL      + ++ A K    R                  +     + K  
Sbjct: 2   VVYGVNPVAEALRAGY-PVLKIYAEKTFRDREKILPFARKRGIKIVKVGKKKLFELAKTE 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            HQG+    +P+     + +    L     L+ LD + DPHN+GAI RSA AF   GI+ 
Sbjct: 61  KHQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGIVL 120

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  S + +  + K+++GA+ +IP+  +S+      K        +       K +    
Sbjct: 121 PKDRSATITNTVVKASTGAVFYIPFSIVSSF-RLALKKFKEAGGWLIGLESGGKSISNYS 179

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + L+ G+EGKGL   T +       + M G + +LNVSNA A+ LY+     +K
Sbjct: 180 FPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQSK 237


>gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 13/264 (4%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++           S+   + + G   V   L +    +  +  +  A      
Sbjct: 3   DNPRSDRVRRVAGLSGRSARSRASAVLVEGPQAVRELLVHRPASVRDVYISAAARLAHPG 62

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            A         V TV  +    +              A   +   +   +    +++   
Sbjct: 63  IAGAARSATRWVHTVTDEVAAALSADCQ----GVCAVASADAIVREWPADGGFYVIIAQG 118

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A     ++T    +   S  + ++++G++ H+P I       A+  
Sbjct: 119 RDPGNVGTIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVIPHPAFGAAVDA 178

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-----KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +H+ G + +G S   +      +          A  LG E +GL          +  + M
Sbjct: 179 LHARGARVLGTSGGPRAVPLPAVEEEGALAGPHAWALGNEARGLDADEVAACDLLVAIPM 238

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G+ ++LNV++AAAV LY +Q   
Sbjct: 239 TGLAESLNVASAAAVCLYASQRAR 262


>gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 265

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRFEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G +  +P+  +    D L ++       
Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +             ++A+++G EG GL  +    A  +  + M   + +LNV
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252


>gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 280

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P        + +  ALN     +  L+  K A   +          PV T     +
Sbjct: 30  NEPKPGIFIAESPNVIERALNAGYEPLAVLIEEKQADDLIPKLFFAYPELPVYTAKFDLL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             + G       L      +L    +       + VL++V +P NIGAI RSA A   D 
Sbjct: 90  TNLTGFALTRGLLCAMKRKILPSVAEICEGKHRIAVLENVMNPTNIGAIFRSAAALGMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ T   S       A+ + G +  IP+       D               ++      +
Sbjct: 150 VLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNADLSCGGLEALRSLGFQTAAMALKED 209

Query: 222 QEIKNDK-------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +D        +A+ILG EG GL   T         + M   + +LNV+ A+AVA +
Sbjct: 210 SVSIDDPKLLAAEKLAVILGTEGDGLASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFW 269

Query: 275 ITQNHFA 281
               +  
Sbjct: 270 ELTKNRK 276


>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 335

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 10/220 (4%)

Query: 70  QLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           Q     +   R             +   P   +D++      HQGL L+  P      + 
Sbjct: 116 QQFIDNDERVREALQLAAERGGINLMEAPRPELDRMTNGL-NHQGLVLQVPPYEYAHPED 174

Query: 129 -------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++
Sbjct: 175 LADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSA 234

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGL 240
           G     P  R +NLT AL++    G   +GL++D +  L         + +++G+EGKGL
Sbjct: 235 GTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDLDALEGPVVIVVGSEGKGL 294

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ET      + MPG  ++LN   AA + LY      
Sbjct: 295 SRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRR 334


>gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
 gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
          Length = 271

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 28/265 (10%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-------------------- 84
                +++G H VSA ++       +L    +  +  D                      
Sbjct: 7   NHNRSWIWGRHLVSATIHAKYWIPLELHYDSHRFSPHDPLGDPIVGDFPLGDSIEEAHST 66

Query: 85  --ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMV 137
              NL     ++ V      + +++ +   HQGLA           +     +   LL++
Sbjct: 67  SLKNLCEAVGIQLVASTADQLSRLI-RAEDHQGLAARMPEFPYADFEGLFQAQLPALLVI 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + D  N+GAI+R A A    GI+  ++     ++  A+S++GA+  +P  R+  L  
Sbjct: 126 LDGIQDSFNLGAIIRCAEALGAGGIVLPEKGQSGVNSQAARSSAGAVNFLPIYRVPALDR 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+ ++ S G + +  +  S++ L   +    + LI+G EGKG+             + M 
Sbjct: 186 AIDQLKSRGMKILAATEKSEQSLWNVVIPAPLCLIIGNEGKGVSSALLSACDIQVRIPMA 245

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G   +LN + AA + L   Q    K
Sbjct: 246 GQTSSLNAAVAAGILLAEIQRQSLK 270


>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
          Length = 388

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 98/306 (32%), Gaps = 30/306 (9%)

Query: 1   MNLISKKKSEKIFSLKDS--HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           +  ISK +   I + K+    + KL         M +  +  +   +   + + G   + 
Sbjct: 77  LEKISKSE---IINDKELGFEFTKLSLTDSRLTTMMTTVRSKKRRDKNRQIVIEGRRLIL 133

Query: 59  AALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            AL    R    L + ++ LA +  +           +  VP   +            LA
Sbjct: 134 EALECGLRLKTILFSQRDQLAAIKEEVTVLQKAKQTEIYKVPHHDLKIWSTLTTPPGVLA 193

Query: 116 LETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +   P                 + +V D++ DP+N+G+I+R+  A  C  ++ T      
Sbjct: 194 IFERPCSQHVRKTLSKVPPPLPITVVCDNIRDPNNLGSIIRTCAALPCLQVVITIGCCDP 253

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---- 227
             +   +   G    I      +  +    + +       +        +     +    
Sbjct: 254 WESKSLRGGCGGHFRIQIHDDVHWEEVPLVIPAELADNCWVFIAENNISKSAGLTNVLDY 313

Query: 228 --------KIALILGAEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVAL 273
                      +I+G E  G+  +  +            H+ +   I +LNV++A  + L
Sbjct: 314 TNIEQTGSHSVVIIGGESHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLIL 373

Query: 274 YITQNH 279
           Y  + H
Sbjct: 374 YELRKH 379


>gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 357

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 84/271 (30%), Gaps = 11/271 (4%)

Query: 17  DSHYAKLRRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
                 L+ +H     K      Q  R   +     +YG +   A   N    I +    
Sbjct: 87  RPEEESLKPDHGGISGKSYIDPEQLRRQRLEETR--IYGENACLAMFQNRPDAIVRAWFV 144

Query: 75  KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128
           ++   R          +      V  Q + K  G E  H G+               L  
Sbjct: 145 QSVTPRFRNALKWMAANRKAYHVVDDQELAKASGTE-HHGGVCFLIKKRNGLGVETYLQQ 203

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ L++V +PHN+GAI+RS   F   G++          A +  +  GA     
Sbjct: 204 APAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVVLQDTAMLESGAAVRTAEGGAEHIKG 263

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                      +  +         S      L Q    +K+ L+LG E  GL     E  
Sbjct: 264 IDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVLVLGQESDGLSDSIWEDG 323

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   G +++LNVS A  + L      
Sbjct: 324 DIRLSIGGTGRVESLNVSVATGILLAEWWRQ 354


>gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 253

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 13/252 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKT 95
           K    +  +  F+YG +    +L   +++I ++      ++ +              ++ 
Sbjct: 2   KREQGTADQAEFVYGHYASVESLK-GTQEINKVWLQTGLQDKIRNEITQLAKKRGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D           +   ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G           + K    AL++G EGKG+ P  ++   SM  + M G +++LN S A
Sbjct: 180 VFGTDMSGDDYRRWDAK-GPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVA 238

Query: 269 AAVALYITQNHF 280
           A++ +Y   N  
Sbjct: 239 ASLLIYQGFNSR 250


>gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 269

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 101/277 (36%), Gaps = 18/277 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S++          +   K      Q  R   Q     + GV  +  AL      + 
Sbjct: 3   ERITSVQ----------NPRIKAASKLRQ-RRARQQQGRTIIDGVREIDRALATG-FPLL 50

Query: 70  QLLATKNALARLD-----WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
           +L      L   +        +      +  +     +K+   E     +A+   P    
Sbjct: 51  ELFVCDELLVGEEAAALRQRISQDRELNLFEITRDVCEKLSFGERAEGVIAVANYPDTML 110

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             D + +  L++VL+ V  P N+GAILR+A A   D +I     +   +    +++ G +
Sbjct: 111 DHDQLSDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRASLGTI 170

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                   +   + L  + + G Q      +     EQ       ALILG+E +GL  + 
Sbjct: 171 F-AVPTFEATTAETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSEAEGLSDRW 229

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +   L M GI  +LNVS  AAV LY      A
Sbjct: 230 LADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQRA 266


>gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
 gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
          Length = 262

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 26/255 (10%)

Query: 50  FLYGVHTVSAALNNPSRK------IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + G H V   +   + +      +    A      +    A      P K      +DK
Sbjct: 5   IVTGFHAVEEYVRRAAVQEKQPAALQLFYAAPGPRVKKILAAAEKAGIPCKKTESGELDK 64

Query: 104 IVGKEAV----HQGLALETAPLLSPTLDAVRN--------------SQLLMVLDHVNDPH 145
           +    +V    H+G+ L  +     TL+ +                 Q ++VLD V DPH
Sbjct: 65  LTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAERQTVVVLDSVTDPH 124

Query: 146 NIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIGAILRS         +  +R      + + +   AS        I I++         
Sbjct: 125 NIGAILRSCDQLGVSLAVLPERRGVKNVDGSEVISRASAGASAWVPISIASNLVRAVGQL 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 I  +     P+       +  LI+G+EG G+     E    +  +   G + +L
Sbjct: 185 KAAGFWIYGADSGGTPVTDVDFPPRTVLIMGSEGSGISRLLAEQCDRIVSIPTCGKLDSL 244

Query: 264 NVSNAAAVALYITQN 278
           NVS AA + LY    
Sbjct: 245 NVSVAAGILLYDIYR 259


>gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 242

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 89/252 (35%), Gaps = 21/252 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +Q  + K ++ ++     + G  +++  L         L+AT+     +       
Sbjct: 6   QVKLIQKLHHK-KYRNELNLFIVEGKKSINEFLQAGYTP-QLLIATEAFTTSVPQHL--- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V    + K+   +   +GLA+   P     L       +++ LD+V DP N+G
Sbjct: 61  ----ITPVSKDELRKVSTLQNPDEGLAVFQQPKHKGIL----QEGVIVALDNVQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F  + ++   +     +  + ++  G+L  +    +           +    
Sbjct: 113 TIIRLCDWFGVETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYLDL-----AAFLTTTAL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNV 265
            +       + L          LILG E  G+  + +  +  +  +         ++LNV
Sbjct: 168 PVYTMDLEGENLYTATFPKDCILILGNEANGISSEVRALSNEVITIPRFSQHQRTESLNV 227

Query: 266 SNAAAVALYITQ 277
           + A A+ L    
Sbjct: 228 AMAGAIILSEVM 239


>gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
          Length = 339

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 12/270 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
            K  K    K+   A          + +  + +S+         L G + V  AL    P
Sbjct: 54  PKKTKWKQEKERRAAAAEGRAPKAGRPKRPSTQSKRRDSDGVDVLVGRNPVVEALRAHVP 113

Query: 65  SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
              ++ +  T+ +   R            +  V    +D++  + A+HQGL L+  P   
Sbjct: 114 GTALYVVNGTELDDRIRESIRLAGNRGISILEVSKSELDRLC-QGALHQGLGLQVPPFHY 172

Query: 124 PTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                            LL+ LD V DP N+GA +RSA AF   G++  +R +   +A  
Sbjct: 173 EEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRSAAAFGAHGVVVPQRRAAGMTATA 232

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGA 235
            ++++GA   +P  + +NLT A+Q+    G    GL +D +  L       D + L++G+
Sbjct: 233 WRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLDADGEIDLFDLPAAVDPLMLVVGS 292

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           EG+GL     E+      + +   +++LN 
Sbjct: 293 EGRGLSRLVGESCDLRVRIPIASAVESLNA 322


>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
 gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
          Length = 348

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 130/295 (44%), Gaps = 27/295 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++++           R+ R   ++ +  + ++ TS  ++L + G + V  AL   
Sbjct: 38  TPKAEDRVYHKAYKAKKAAERHTRADPRLAARRRVAKFTSDSDDLVI-GRNAVLEALRVS 96

Query: 64  --PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
              S          +   R            +       +D+I  K   HQG+ ++  P 
Sbjct: 97  VPASTLYVAARLEHDDRTREIMRLAGIQGLHILEADRLEMDRIA-KGGHHQGVIMKAQPF 155

Query: 122 LSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L+                      +    L + LD V DP N+GA++RSA AF  +
Sbjct: 156 QYSSLNELADRAERKARAMQEASNESARINARPLFIALDGVTDPQNLGAVIRSAAAFGAN 215

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+  +GL     K +
Sbjct: 216 GVILPERRSASVTAAAWKVSAGAAAHMPIARVVNLTKAIEGLKERGYYAVGLDGSGSKEV 275

Query: 221 EQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     D + ++LG+EGKGL   T+E    +A + M  ++++LN S AA + LY
Sbjct: 276 GQTGFETDPLIVVLGSEGKGLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330


>gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 197

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 74/153 (48%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  +++LD V DPHN+GA +R+A     D +I  K  +   +  +   + G   +   
Sbjct: 44  KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDTVMSVSCGGASNTAI 103

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ N+   ++K+   G    G S  + + L        +AL++G+EGKG+R  T+E   
Sbjct: 104 FRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGSEGKGMRRLTEEKCD 163

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  + M G +  LNVS A  V LY      A+
Sbjct: 164 FLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAE 196


>gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 253

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++  +       G   V   L         L AT   L          
Sbjct: 8   RVKYIRSLELK-KNRKEERVFLAEGPKLVGDLL--GHFPCKFLAATSEWLREHSAVKA-- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V P+ + +    ++  Q LAL   P      + +RNS L + LD + DP N+G
Sbjct: 63  --VEVIEVGPEDLSRASLLKSPQQVLALFEQPKYEIDTEVIRNS-LCLALDDIQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +    ++  G +  +    I+      + +H  G  
Sbjct: 120 TIIRLADWFGIEHIFCSPNTVDVFNPKAIQATMGGIARVKVHYIALP----ELIHVLGNV 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +    K + ++  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 176 PVYGTFLDGKNMYEQPLSKNGIIVMGNEGNGIGAEVEKLVNRKLYIPNYPQERETSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 236 VAIATAIVCAEFRRQ 250


>gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105]
 gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105]
          Length = 273

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 91/285 (31%), Gaps = 28/285 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I   ++E++ +        L  NH                         G+H     L+
Sbjct: 9   QIESAQNERLKAAIKL----LSSNHAL--------------RNSGLAAAEGLHLAETLLH 50

Query: 63  NPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            P   I  +   ++ L + +W       D           +      K+         + 
Sbjct: 51  LPGAHIESVWIPQSLLNKPEWLTMSALSDVLENGEVRCLVLSDTLYSKLSKLNTPTGPMI 110

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                  S T+D  ++  LL   D + DP N+G +LR+  A     +  +   +   S  
Sbjct: 111 FFKPVNASATIDLKQDIALL---DGIQDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDK 167

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++  GA   +      +L  AL    S     +         L           + G+
Sbjct: 168 VLRAGMGAQFGLQLYTELDLLQALSAAKSKIPVRVTSLHPKSVDLFNADLKPAGVWVFGS 227

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG+G+     + A+    +     I++LNV +++AV L+      
Sbjct: 228 EGQGVSQAWLDRASEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272


>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 248

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI                      +  +K +   +     L G H +  A
Sbjct: 1   MEAITSIQNPKIK-------------------NYNKLKKKKERDKQGLAILEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +    + QL   + +    +          V  +  +  + + G              
Sbjct: 42  VES-QIMVTQLFMIEPSRVPTELIEAAE---EVYEITQKVAETLSGTVTPQG-----IFA 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           ++      V  ++ +++LD + DP N+G ++R+A A   D I+ TK  +      + +++
Sbjct: 93  IIEKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP   + +++  +       + T    +      +   + D  ALILG EG+G+
Sbjct: 153 QGSVFHIPIQYVDDMSAWMSSFKGPIYGTALQDA--TTYHQVASQQDTFALILGNEGEGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   T    + + G  ++LNV+ AA + ++  +
Sbjct: 211 AMDLLAHTTQNLIIPIYGQAESLNVAVAAGILMFYLK 247


>gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 260

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++  Y++++     S    +     L G+H   + L +    +  +++  +       
Sbjct: 6   SKDNPQYRELKQLASSSAARRKSGQSVLDGIHLCQSYLEHIDVPLLCVVSEASQHHPEVA 65

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                          +       +   E     L L   P+     D    +Q  ++LD 
Sbjct: 66  AIMGECERRGGECLLLTDSLFHPLSQVENGIDILFLIVTPVHE---DCPELTQTGVLLDR 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A     +  +   +   S  + ++  GA   +      +L   ++
Sbjct: 123 IQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFLLEVFEDVSLEKLIE 182

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     I  +  +KK +     N  +A +LG EG+G+  +    A+    +   G +
Sbjct: 183 ---TAKIPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDERLMVMASDKLVIPHMGAM 239

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+  AAV  +     
Sbjct: 240 ESLNVAACAAVCFFEQVRQ 258


>gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
 gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
          Length = 251

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 96/256 (37%), Gaps = 16/256 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT N L       +  
Sbjct: 6   KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL----KMNHSA 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   + LA+   P      + +++S L + LD V DP N+G
Sbjct: 59  TANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +     S      Q + S    
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +  +   +  E  +    +++G EGKG+ P+ ++      ++          ++LN
Sbjct: 174 PVYGTFLNGNIIYTESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2]
 gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2]
          Length = 243

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 89/254 (35%), Gaps = 23/254 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++            E   + G H V  AL         +L    +  +     
Sbjct: 9   QNPKIKQLRKIFND----KNSEFFIVEGYHLVEEALKEN-----IVLELYESDYKTAIYD 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N         V    ++ +   +     +AL         L        ++ LD+V DP 
Sbjct: 60  NS------ILVSQNVLEALTKTKNPEGIVALCRKKPNFEQL-----GNKVVFLDNVQDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A +F  D +++   +   +    ++ A   +  + Y   +     L+   + 
Sbjct: 109 NVGTIIRVAKSFGFDTVVSNVNFYNDKVIRSSQGALFTVNLVNYNYDNLTNILLKYKQNG 168

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                     S   +E+    +DK  ++ G EG G+     + A  + ++ +    ++LN
Sbjct: 169 FKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSALADIADMLIYVPI--NFESLN 226

Query: 265 VSNAAAVALYITQN 278
           V+  A + LY    
Sbjct: 227 VAICAGIVLYEANK 240


>gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
 gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
          Length = 147

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 76/144 (52%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D + DPHN+GAILR+      DG+I TK  S   +  + K+++GA   +P   ++NL+ 
Sbjct: 1   MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+ +   G+  +G      +   + + +    L++G+EG+G+    ++    M +L M 
Sbjct: 61  TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
           G I +LN S AAA+ +Y   N   
Sbjct: 121 GSITSLNASVAAAILMYEVYNQRN 144


>gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 24/256 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQT 100
            QPE   ++G+H V+  L      + +L       +       +    H  P   +    
Sbjct: 41  DQPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIP---LDRAG 97

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-----------------DHVND 143
           +      E  HQG+A   AP    +L  +      +                   D + D
Sbjct: 98  L-PPAAAELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQD 156

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA+LRSA AF  DG+I  K  S   S  + K+A+G    +   R +NL  AL  + 
Sbjct: 157 PHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTLK 216

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF   G S ++   L +        L+LG E KG+RP  ++    +  + +   +++L
Sbjct: 217 KHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVESL 276

Query: 264 NVSNAAAVALYITQNH 279
           NVS AA + L   +  
Sbjct: 277 NVSVAAGIMLVEIRRR 292


>gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40]
 gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 226

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L     K+  +   K+ + +  ++  +     +  V  +   + + +  
Sbjct: 2   IIYGKQLFLHLLEKHKEKLINIYLAKD-IEKDIFNKIVKSGVKIHKVDNKK-AQALARGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E       +L+ ++    L+VL  ++D  NIG+I+R+  A    G+I   + +
Sbjct: 60  NHQGFLAEVCEFEFASLNEIKKQDFLVVLYGLSDVGNIGSIVRTTYALGGGGVIMISKSA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E       AS A  +   I + +   +L          I  S    K   +     K 
Sbjct: 120 SME---GIIRASSAAAYELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNPSECKFGKKT 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L++G+EG+G+  K  E       ++M     +LNVS A  +  
Sbjct: 177 VLVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGILF 220


>gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 270

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   L      +  LL  +  +  L  D   P
Sbjct: 20  DFRDLSTADRRPDRPGGRGLVIAEGV-VVVERLVASPYPVRALLGVRRRIEALA-DLLAP 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P     P  +  +VG       LA+            V  S+ L VL+ V D  N+G
Sbjct: 78  LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 137

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   GF+
Sbjct: 138 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 197

Query: 209 TIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L+  +     +E    +  +A++LG+EG GL  +    A     + M G + +LNV+
Sbjct: 198 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 257

Query: 267 NAAAVALYIT 276
            A A+A +  
Sbjct: 258 TAGAIAFHAM 267


>gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 287

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   L      +  LL  +  +  L  D   P
Sbjct: 37  DFRDLSTADRRPDRPGGRGLVIAEGV-VVVERLVASPYPVRALLGVRRRIEALA-DLLAP 94

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P     P  +  +VG       LA+            V  S+ L VL+ V D  N+G
Sbjct: 95  LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 154

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   GF+
Sbjct: 155 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 214

Query: 209 TIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L+  +     +E    +  +A++LG+EG GL  +    A     + M G + +LNV+
Sbjct: 215 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 274

Query: 267 NAAAVALYIT 276
            A A+A +  
Sbjct: 275 TAGAIAFHAM 284


>gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 266

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 10/262 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            +      ++  N+  +  S    +   G H V + L +    +  ++   NAL      
Sbjct: 6   PHDPRLDDIRDLNKSDK--SGEGLVIAEG-HLVVSRLVSSRFPVRCIVGFANALKHYVET 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              P   P+  V   T+ ++VG +     +A           +A+ +++ ++VL+ V D 
Sbjct: 63  YGEP-GCPMYEVDRATLAEVVGFDMHRGLVAAADRVAPLEVSEAISDAKTVVVLEGVGDH 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG++ R+A     D ++     +        + + G +  +P+ R        Q+   
Sbjct: 122 ENIGSLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDGGFTTWQRNLD 181

Query: 205 WGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                           E          +DK+AL++GAEG GL           A + M  
Sbjct: 182 LLADAGFHLVSLTPDNEAVHLAEALAGHDKVALMVGAEGPGLTEHAMRATHVRARIPMAE 241

Query: 259 IIKALNVSNAAAVALYITQNHF 280
              + NV+ AAA+A Y  Q   
Sbjct: 242 GTDSFNVATAAAIAFYERQRSL 263


>gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 273

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 8/258 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   ++ +   ++ R   +     + GV  V  AL       + L   + A      +
Sbjct: 10  PKHALVRQARELARERRAREESGLAHMEGVRLVEEALAAGVEVAYLLYTPELAERPRGAE 69

Query: 85  A---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                     P+  V P+ +++          +       LS TLD +    L++VLD +
Sbjct: 70  LLRTAAARGVPLHPVTPEALERAADTRTPQGVVG--VFRPLSRTLDDLGPG-LVLVLDGL 126

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G  +RS  A    G +                 +        +    + DAL  
Sbjct: 127 QDPGNLGTAIRSLEAMGGGGAVVAG--GVDPYNPKVVRGAMGSLFRLPVVKRPIGDALAG 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G +     +               A+++G+E  G  P+ +  A  +  + M G  +
Sbjct: 185 LRAAGRRIYLAEAGGALAPWAVDLARGAAVVVGSEAAGPSPEARALADGVVSIPMAGPTE 244

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN   AA++  Y     
Sbjct: 245 SLNAGVAASLLAYEAMRQ 262


>gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 312

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 147/303 (48%), Gaps = 40/303 (13%)

Query: 1   MNLISKKKSEKIFSL-KDSHYAKLRRN-HRDYKKMQSFNQKSRHTSQ------------- 45
           M+  S KK  K+ S  K+  +  ++R      +   +  ++                   
Sbjct: 1   MSAKSSKKRPKVKSQGKNPLFDPVKRAADASGRSASNAPRRGAPRRGAPARQNDDSQIKA 60

Query: 46  -----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---------DANLPHPF 91
                    FL+G H V+AAL NP R+I  L  T ++    D           A LP   
Sbjct: 61  APKPPQGGYFLWGRHAVAAALVNPDRRIAALYVTDDSRDSFDEMWQTLAMDRQAELPDAR 120

Query: 92  PVKTVPPQTIDKIVGKEA---VHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVND 143
           P++    + +D I G ++   VHQG+A    PL +P LD            +++LD ++D
Sbjct: 121 PIE---RRRLDGIGGHDSEKVVHQGMAAAVWPLDAPHLDDFIADIADKPVRIIMLDQISD 177

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA AF CD IITT+R++P E+  LA++A+GALEHIP IR+ NL  A++ + 
Sbjct: 178 PRNVGAILRSARAFGCDAIITTQRHAPEENGALARTATGALEHIPIIRVVNLARAVESLQ 237

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                  GL+ D    +       ++A++LGAEG GLR  ++E    +  + +     +L
Sbjct: 238 DHDITVAGLAGDGTMDVGALADFPRLAIMLGAEGPGLRRLSREHCDHLVRIDIAPDADSL 297

Query: 264 NVS 266
           NVS
Sbjct: 298 NVS 300


>gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 257

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 16/258 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K +++   K +H          G   V   L     K+        A         L
Sbjct: 6   AKIKYIRALEAK-KHRDAEGVFVAEGPKVVGELLATMPAKLLVATPQWQAP------VAL 58

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPH 145
                + TV    + K+    A  Q +A+         +  D V  ++L ++LD V DP 
Sbjct: 59  HASTELITVNDDELQKLSFMRAPQQVMAVFPKFSQQGDVLKDCVETNELTLMLDGVQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F    ++ +   +   +  + ++  G++  +                  
Sbjct: 119 NLGTIVRLADWFGIRHVVCSLDTADVYNPKVVQATMGSIARVKVSYTPLE---PLLDALP 175

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261
               +  +      +  +       +++G EGKGL    ++       +          +
Sbjct: 176 PSFPVYGTLLDGDNIYGQQLCAHGIIVMGNEGKGLSTSVRQRVNHKLLIPHFATGEQRAE 235

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 236 SLNVAIATAIVCAEFRRQ 253


>gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+GA++RS  
Sbjct: 177 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGTDDCVLALEDVGNPHNLGAMMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ DA+++    G+  +  SS 
Sbjct: 236 HFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQFRKAGYSIVTTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L+LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 AGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 265

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 9/254 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83
           +    K++    Q+ ++  +       G+ TV   L     +  +  L+ T   LA    
Sbjct: 10  SRALLKRIARLQQR-KYRDREGLFIAEGLRTVRELLGQMAGADMLDCLICTAEGLAFFPE 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142
            +                +++ G  +    L +   P+     +       LL+ LD V 
Sbjct: 69  SSIYSGSL--FLASEDDFNRVAGTSSPQGVLGVFRQPVFPLPYERPYSGRALLVALDEVQ 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G ILR+A     DG++         +A   +S++G+L  +P+ R  +L  AL+++
Sbjct: 127 DPGNAGTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSAGSLLGMPHTRAGDLPAALRQL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGI 259
              GF+ I  S + +         ++  L++G E  G+ P+ +  A  +  +     P  
Sbjct: 187 QKAGFKVICSSLEGEDFRSGGAWPERTVLVVGNEANGVGPEVRVLADRLVKIPHGRGPAR 246

Query: 260 IKALNVSNAAAVAL 273
           +++LN + +AA+ +
Sbjct: 247 VESLNAAVSAAILM 260


>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 246

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 96/277 (34%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI                    + +  +K +   +     + G+H +  A
Sbjct: 1   MEQITSTQNNKIK-------------------LANKLKKKKERDKTGLALIEGIHLIDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +           +           +  +  + + G              
Sbjct: 42  FKSNIMIKQLFVIEPERTDSRLLEYAKEA----YEINMKVAESLSGTITPQ--GFFAVIE 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +   +    +++LD + DP N+G ++R+A A   D ++  K  + +    + +++
Sbjct: 96  KPKHNISKAKQ---VLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +         Q         +  +   K    Q+      AL+LG EG+G+
Sbjct: 153 QGSVFHIPIVTTELNKFIEQFDGPVYGTALENAVSYKNIESQDTF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +     +    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHLK 245


>gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
          Length = 263

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 14/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           + G++ V  AL      I  L+    AL      + + +    P   VP  T+D++    
Sbjct: 26  IVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTLDRLTDL- 84

Query: 109 AVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             HQG+AL          +           L +  D V DP N+GAI+RSA AF    ++
Sbjct: 85  -PHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAAFRASAVL 143

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   + ++ K+++GA+  +P   + NLT  + +   +G   +GL S+SK P+++ 
Sbjct: 144 IGKNRSARVTPMVWKASAGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNSKTPIDKS 203

Query: 224 IKNDK-----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   K     + LI+G+EG G+    ++    +  +     + +LNVS A ++ALY  Q 
Sbjct: 204 VFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIPTDASVDSLNVSVAVSIALYELQR 263


>gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
 gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
          Length = 352

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 108 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 167

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+GA++RS  
Sbjct: 168 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 226

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ +A+++  S G+  +  SS 
Sbjct: 227 HFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLEAIEQFRSAGYTIVTTSSH 285

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL +     K+ L+LG E  GL      +A     ++  G +++LNVS A  V L  
Sbjct: 286 EGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSINGTGNVESLNVSVATGVLLAE 345

Query: 276 TQNH 279
               
Sbjct: 346 WWRQ 349


>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 331

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 29/304 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++        +  +  R   ++ +  + +  TS  ++L + G ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKQAEKRQRSDPRLAARRRAAHFTSNSDDLVI-GRNSVLEALRVG 83

Query: 65  SRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        H   +       +D+I  +   HQG+ L+  P
Sbjct: 84  -VPASVLYVANRIEHDDRTREIVRLAGQHGLNLLEADRLEMDRIA-RSGNHQGVILKADP 141

Query: 121 LLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L                       +    L + LD + DP N+GA++RSA AF  
Sbjct: 142 FQYSSLHELVERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAFGV 201

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ +IGL     K 
Sbjct: 202 NGVILPERRSASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKERGYYSIGLDGGGSKL 261

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +     D + ++LG+EGKGL   T+E   ++A + +   +++LN S AA +ALY T N
Sbjct: 262 VGETGFETDPLVVVLGSEGKGLSRLTREACDAIASIPITSAVESLNASVAAGIALYATVN 321

Query: 279 HFAK 282
              K
Sbjct: 322 ARRK 325


>gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 325

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 17/261 (6%)

Query: 34  QSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLP 88
           Q    + R+      ++  ++G + V  A        R        K+            
Sbjct: 61  QRAAARDRYRPNTAADSEIIFGRNPVVEAAAAGVPLKRLFVSASLMKDERLSKVVQRGAA 120

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMV 137
               ++   P  +D+I          A   A   +  +D              +  LL+V
Sbjct: 121 SGAKLQECSPADLDRITAGGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPLLIV 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  NLT 
Sbjct: 181 LDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTH 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           ALQ++ + G   IGL       L      +  + ++ G+EGKG+    +ET   +  + +
Sbjct: 241 ALQQLQAEGAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALYITQ 277
              +++LN + A  +ALY   
Sbjct: 301 DKRMESLNAAVATGIALYQIA 321


>gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly]
 gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly]
          Length = 244

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 101/237 (42%), Gaps = 11/237 (4%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP----------QTIDKI 104
           +++  ++ N    +   ++  +            H   +  +            +     
Sbjct: 7   NSIIESIKNNKG-LELYISKTSPKTISIEQLARQHNIKIIKINDLTKILGNNNHRGFALK 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +     +  +               +N+ L+++LD + DP N GAILR+A  F+ D +IT
Sbjct: 66  LQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVIT 125

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R S  ++  + +++SGA +++  + + N+ + ++ +   GF         +     +I
Sbjct: 126 NQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINNTKI 185

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ++KIALI+G EGKG+    +  +  +  +   G I +LNVS +  + ++  +    
Sbjct: 186 TDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 325

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 17/261 (6%)

Query: 34  QSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLP 88
           Q    + R+      ++  ++G + V  A        R        K+            
Sbjct: 61  QRAAARDRYRPNTAADSEIIFGRNPVVEAAAAGVPLKRLFVSASLMKDERLSKVVQRGAA 120

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMV 137
               ++   P  +D+I          A   A   +  +D              +  LL+V
Sbjct: 121 SGAKLQECSPADLDRITAGGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPLLIV 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  NLT 
Sbjct: 181 LDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTH 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           ALQ++ + G   IGL       L      +  + ++ G+EGKG+    +ET   +  + +
Sbjct: 241 ALQQLQAEGAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALYITQ 277
              +++LN + A  +ALY   
Sbjct: 301 DKRMESLNAAVATGIALYQIA 321


>gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
          Length = 290

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 22/269 (8%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++  ++    +   +     + G  +V   L      +  L     +       
Sbjct: 10  NPKSERVRRVSELADRKGRKRSGRFMVEGPQSVRELLTYHPGLVEDLYVEVESAQPDASF 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           A           +     V  V    + ++    + V     ++     S  LD      
Sbjct: 70  ATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADAQGVLAVADMQAFLDSSAVLDDFDGHA 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH------- 186
           ++     V DP N G ++RSA A  C  ++         +  + +S +G+L H       
Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAGSLFHLPILTMG 189

Query: 187 --IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +        A+     +G  +    S +      E      A++ G E +GL  + 
Sbjct: 190 TDDFFAWCDTHELAVYAADVYGTDSRQPESLTDVIAMPETLAGAKAVLFGNEARGLTKEV 249

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E    +  + + G  ++LN+  +++V L
Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSSVML 278


>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 270

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +       + R                    +     + G+H +  A
Sbjct: 25  MEQITSAQNNKIKNANKLKKKRDR-------------------DKTGQALIEGIHLIEEA 65

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +   +       +           +  +  + + G     QG       
Sbjct: 66  QQSGITIQQLFVIEPDRTDEALLNYANET----YEINMKVAEALSG-TVTPQGFFAVIDK 120

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  A +    ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 121 PQYDVSKAQQ----VLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRAS 176

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +     T             +  +   K+   Q       AL+LG EG+G+
Sbjct: 177 QGSIFHIPVVTEDLATYMNNFDGPVYGTALENAVSFKEIEAQSTF----ALLLGNEGEGV 232

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 233 NQELLQQTTKNLIIPIYGKAESLNVAIAGSILLYQLK 269


>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
 gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
          Length = 329

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 31/297 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62
           + K   +++    ++ AK   + R     +   ++   +  S+ ++L + G + V  AL 
Sbjct: 25  TPKAENRVYH--KAYKAKKVADRRKMADPRLAARRRVAKFASESDDLVI-GRNAVLEALR 81

Query: 63  NP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                S          +   R        H   +       +D+I  + + HQG+ ++  
Sbjct: 82  CGVPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQ 140

Query: 120 PLLSPTL---------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 141 PFQYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFG 200

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ +IGL      
Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDA 260

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +     D + ++LG+EG GL    + T   +A + M  ++++LN S AA + LY
Sbjct: 261 LVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317


>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
 gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 246

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 32/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI +       + R                    +     + G+H +  A
Sbjct: 1   MEQITSAQNSKIKNANKLKKKRDR-------------------DKTGQALIEGIHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +        +   N       D           +  +  + + G     QG       
Sbjct: 42  YQSGIAIKQLFVIEPNRTDEALKDYAEET----FEINMKVAESLSGTI-TPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    + ++ ++++D + DP N+G ++R++ A   D I+  K  +      + +++
Sbjct: 97  PKYDV----KQAKQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I     T             +  +   K+   Q+I     AL+LG EG+G+
Sbjct: 153 QGSVFHIPVITADLKTFIAGFNGPVYGTALENAQPYKEVASQDIF----ALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +    + + G  ++LNV+ A ++ LY  +
Sbjct: 209 NKALLNETSQNLTIPIYGKAESLNVAIAGSILLYHLK 245


>gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
          Length = 288

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 97/269 (36%), Gaps = 20/269 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++           QP          +  AL    +    LL  K AL R   D +   
Sbjct: 18  YVRLNEAQLFHALEPQPGLFIAESPKVIERALRAGYQPA-SLLIEKKALDRDLADLDHEM 76

Query: 90  PF---------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLM 136
                      P+  V  + + ++ G   +   LA                  +    + 
Sbjct: 77  AINQTSGLGQTPIYVVSSELLSQLSGYNLLRGALAAMHRVKRPDLASFLATMPKAHPRIA 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ V +P NIGAI RSA A   DG++ T   +       ++ + G +  +P+  +    
Sbjct: 137 VLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVPWTYVDAKL 196

Query: 197 DAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                     ++           +       Q  + DK+A+ILG+EG GLR KT   +  
Sbjct: 197 WQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQVDKLAIILGSEGPGLREKTIAQSDF 256

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   + +LNV+ A+A+A +   N 
Sbjct: 257 TIKIPMAPGVDSLNVAAASALAFWELGNR 285


>gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 300

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 91/281 (32%), Gaps = 30/281 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--------PSRKIFQLLATKNALAR 80
             K +     +    ++       G   V  AL           +  + ++ A++  L R
Sbjct: 20  RVKDVAKLAGRPS-RTRRRQFLAEGPQAVREALRAHRDCLAAGGNAVVDEVYASRGCLDR 78

Query: 81  LDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                 L    P ++      +  +         +A+     +          QL+ +L 
Sbjct: 79  YPDFEELTESGPQIRIASELVLSAMADTVKPQGIIAVCRFVDVPLQEVLAAKPQLIAMLC 138

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G +LR+A A   D +I +       +    +S  G+L H+P +  ++  +  
Sbjct: 139 RVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKAVRSTVGSLFHLPVVLGADPAEVA 198

Query: 200 QKMH------------------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++                        ++   S D + P              G E +GL 
Sbjct: 199 RQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPLEQPTLWFFGNEAQGLS 258

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN--HF 280
            +  E A     + + G  ++LNV  AA V LY +      
Sbjct: 259 TEELEAADHRVAVPVHGSAESLNVGTAATVCLYASARAQQR 299


>gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus
           castenholzii DSM 13941]
          Length = 248

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
                      PV+ +  + +D+ +  +A HQG+ALE        LD             
Sbjct: 39  EIVRLAGEIGVPVERIDRRELDRRL-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPA 97

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LDH+ DP N+G +LR+A      G+I   R +   +  +  +++GA+EH+  + +S
Sbjct: 98  LLLMLDHIQDPQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVS 157

Query: 194 N-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           N      +  H+  +       +  +  ++   +  + L+LGAEG GL   T+E    + 
Sbjct: 158 NLAATIERVQHAGVWVVGVEDDERARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLV 217

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            L M G I +LNV+ A ++ LY       +
Sbjct: 218 RLPMRGRIASLNVAVAGSIVLYHAWRVRVR 247


>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
 gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
          Length = 305

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 33/277 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---- 84
            +K++   + + +   +     + G   V   L      +  L    ++           
Sbjct: 18  RFKRIMELSNR-KRREKANRFIVEGPQAVRELLQWMPSVVLDLYVAVDSTEPDAAFINPT 76

Query: 85  ------ANLPHPFPVKTVPPQTIDKIVG-------------KEAVHQGLALETAPLLSPT 125
                   +     V     + +  + G                +  G            
Sbjct: 77  IGQCAGLAMQAGAYVHKATVEVMHHVSGDCQGIFAIADLNQCRELMTGNEQADVLDDEQL 136

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + L+     V DP N G ++RSA A  C+ ++         +  + +S +G+L 
Sbjct: 137 DRGTARAPLIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLF 196

Query: 186 H---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           H                     L     +G +     +      ++        ++ G E
Sbjct: 197 HLPILTMDESTFAQWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTCVLFGNE 256

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +GL     E A  +  + + G  ++LN++ +A++ L
Sbjct: 257 ARGLETGMLEQADDIVSIPIYGKAESLNLATSASIML 293


>gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1]
 gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1]
          Length = 244

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 104/238 (43%), Gaps = 13/238 (5%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPP----------QTIDK 103
           +++  ++ N      +L  +K +   +        H   +  +            +    
Sbjct: 7   NSIIESIKNNKG--LELYISKTSPKAISIEQLARQHNIKIIKINDLTKILGNNNHRGFAL 64

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            +     +  +               +N+ L+++LD + DP N GAILR+A  F+ D +I
Sbjct: 65  KLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDLVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T +R S  ++A + +++SGA +++  + + N+ + ++ +   GF         +     +
Sbjct: 125 TNQRKSVKDNATVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINNTK 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           I ++KIALI+G EGKG+    +  +  +  +   G I +LNVS +  + ++  +    
Sbjct: 185 ITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 294

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 26/261 (9%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP----------- 90
              +P          +  AL+     +  L+  K+   +                     
Sbjct: 30  FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCEKLQSRDLTQKSL 89

Query: 91  --------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    PV     + + KI G +     L     P L       +N++ + +L++V 
Sbjct: 90  VYREDEHVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKNARRVAILENVV 149

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+GAI RSA A   D ++ T   +       ++ + G +  IP+             
Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209

Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    ++             E+ +  +K+A++LG EG GL   T         + 
Sbjct: 210 MDVLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           M   + +LNV+ A+AVA +  
Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290


>gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 88/274 (32%), Gaps = 27/274 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I+  ++  I  +K     K                   +  + +     G       
Sbjct: 1   MDYINSLENNTIKKIKKLKIKK-------------------YREEEQLFIAEGRK----F 37

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        +      +A    +           V  +   ++  +E            
Sbjct: 38  LDFTFEPEIIVFRENYEIAGEIEEKLEKFQCRKIIVSEKVFGQLTSQENSQGV----IVV 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    +  + ++VLD + DP N+G I+R A A     II TK      +  + +S+
Sbjct: 94  YPYIKGSLEKLQKNIVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDCYNEKVVRSS 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++  + +                 +           +    ++ A++ G+EG G+
Sbjct: 154 MGSILNMNILYMEEEELITFLKREGYKIEVTALDKDSVSYTEMKLTERNAIVFGSEGDGV 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +       + + GI ++LNV+ A  + LY
Sbjct: 214 SQNFLKMCDEKIIIPIYGIAESLNVAMACGIILY 247


>gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 279

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 100/277 (36%), Gaps = 16/277 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  L+D    +L      Y  M     +    S            +  AL    R +  L
Sbjct: 3   IIHLEDLDDPRL----AAYSGMTDAQLRDCPDSANGLFIGESRKVIERALAAGVR-MRSL 57

Query: 72  LATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
              +  L +    +D   +    FPV     +    + G E     LA    P L    D
Sbjct: 58  FMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVED 117

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + +++ + VL+ V +  NIGA+ RSA A   D ++ T           A+ + G +  +
Sbjct: 118 LLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQV 177

Query: 188 PYIRISNLTDALQKMHSWGFQTIG-------LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           P+ RI +      +                          E+    DK+AL+LG EG GL
Sbjct: 178 PWTRIGSERAWAAEGVPLLRSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDGL 237

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P T         + M   + +LNV+ A+AVA +  +
Sbjct: 238 APSTIANCDYTVKIPMDHEVDSLNVAAASAVAFWELR 274


>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
 gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
          Length = 274

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 41/272 (15%)

Query: 50  FLYGVHTVSAALNN--------------------------PSRKIFQLLATKNALARLDW 83
            + G H +   L                            PS ++    A +    +   
Sbjct: 3   IITGFHAIEELLRAVEAQLEKNFSGTKSSQIGKKAGGGKTPSVRLKLFYAKQGPRVKKIL 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------ 131
                   P++      +DK+V     +         +     +                
Sbjct: 63  AQAEKLSVPIERRTDAELDKLVAPLPEYLQNHRGIILIDERPQEQSPKLSSDALLAELAS 122

Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++VLD + DPHN GAI+RSA  FS D ++  +R S  +   ++K ++GA   +P 
Sbjct: 123 REKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWVPL 182

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  +NL   ++++   GF   G  +  +         DK  LI+G+EG G+    + +  
Sbjct: 183 LYTANLVRTVEELKRNGFWVFGADAQGEPLP-HTKFPDKTLLIMGSEGSGISRLLKTSCD 241

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           S   +   G + +LNVS AA + +Y  +    
Sbjct: 242 SFTAIPTSGKLDSLNVSVAAGILMYEVRRQQN 273


>gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae R3021]
 gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 22.4-21]
          Length = 189

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            + + LL+VLD V DPHN+GA LR+A A     +I  K  S   +++  K A GA E +P
Sbjct: 34  NKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVP 93

Query: 189 YIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR++NL+        +     +G + ++ + + Q      +AL++GAEG+G+R  T+E 
Sbjct: 94  LIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREH 153

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + M G + +LNVS A  V L+      
Sbjct: 154 CDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 186


>gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 289

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    L        RL    +   
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 77

Query: 90  PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV         + ++VG       LA           + +  S+ + VL+ VND  N+
Sbjct: 78  GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGF 197

Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++               + D++A+++GAEG GL P     +     + M     +L
Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257

Query: 264 NVSNAAAVALYITQN 278
           NV+ AAA+A Y    
Sbjct: 258 NVATAAALAFYERSR 272


>gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 269

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 6/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           + +    K   +  +K     Q       G  T+SA L++       LL   N L+ L  
Sbjct: 10  KTDDPRLKAYHNIREKDLVGRQH-QFIAEGKVTLSALLHSKDFSAISLLIVANRLSGLLP 68

Query: 84  DANLPHP-FPVKTVPPQTIDKIVGKEAVHQ---GLALETAPLLSPTLDAVRNSQLLMVLD 139
                 P  P+  VP + +D I G             +T P L   L  +    L++VL 
Sbjct: 69  LLEKTQPLCPIYCVPQKVMDNITGFHVHRGVLGIGKRKTLPSLQSFLQHLPEKALILVLC 128

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +++  N+G+I R+A AF+ +GII  K           + ++GA   +PY + +++ D +
Sbjct: 129 GISNHDNMGSIFRNAAAFASNGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDII 188

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +    F    LS  +   L+Q  K  ++ALI G EG GL     + +     + M   
Sbjct: 189 AALKDKNFHLYALSPSASHTLKQANKTKRMALIFGTEGDGLPTHILQQS-KTLRIPMTNG 247

Query: 260 IKALNVSNAAAVALYITQN 278
             +LNV+ A+ +AL    N
Sbjct: 248 FDSLNVATASGIALAHFIN 266


>gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 297

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I+    ++I                DY+ +     ++R           G   +  AL 
Sbjct: 29  QITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALR 73

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                   L+  K    R+D  A+L     PV    P  +++  G       LA      
Sbjct: 74  AGYPARSFLVDAK----RVDQLADLDTGDAPVYAATPDVLERATGFHVHRGVLASFRRKP 129

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L      + +++  ++L+ VN+  N+GAI R+  A   D ++ +   +        + + 
Sbjct: 130 LPDAAGVLADARRAVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRVSM 189

Query: 182 G---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           G   A+ +            ++                        +  + AL+LGAEG 
Sbjct: 190 GEVFAVPYARLEPWPEALAGVRAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGA 249

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL     + + +   + M   + +LNV+ A AVA +    
Sbjct: 250 GLTRAALDASDARVVIPMRRGVDSLNVAAATAVACWELGR 289


>gi|255635868|gb|ACU18281.1| unknown [Glycine max]
          Length = 324

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 102/288 (35%), Gaps = 27/288 (9%)

Query: 16  KDSHYAKLRR----NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPS 65
           + SH  K +     ++   K        S +     +  + G   +         + + S
Sbjct: 34  RTSHEEKPKPITSVSNPFVKHCLKLRNSSSYRRSHASAIVVGATPIREICRFRESIQDGS 93

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE-------T 118
             +  L+    A      D +      V +V  + +  +   E++     ++        
Sbjct: 94  VLMDCLILPDKADIPDGLDKSTASVVRVSSVVMRKLSGLQTTESLDAIALMKIPASFFSV 153

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  L    +   ++VLD + DP N+G +LRSAVAF  DG+          +    +
Sbjct: 154 DDHQKNCLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALR 213

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---------KKPLEQEIKNDKI 229
           ++ GA   +P +  S       K         G                     + +  +
Sbjct: 214 ASRGASFQLPVVSGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPL 273

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            L+LG+EG GL  K+ +T   +  + M G  ++LNVS A  + LY+ Q
Sbjct: 274 CLVLGSEGSGLSEKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320


>gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
 gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
          Length = 233

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 3/230 (1%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V   L +     K+      K    +   +        +     +T +   G  
Sbjct: 4   IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASRRNIKIFYTDRRT-ENSQGVV 62

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+                   +   +++VLD V DP N GAI+RSA  F  DGII   R 
Sbjct: 63  ALVSEFDYYVDFSAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRN 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  + KS++GA+EH+  ++++N++D + K+  +G+   G  +D +    +E   +K
Sbjct: 123 SVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYPEK 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             L+LG+EG G+R K +E    +  +H+ G I +LNVS A  + L     
Sbjct: 183 ACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIILAEMSK 232


>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 340

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +H       +   K        S +      + L G+  +    +     I  LL     
Sbjct: 54  NHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 112

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127
              L  +        V  V    + K+ G ++V    A+    +     D          
Sbjct: 113 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 170

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
              + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA  
Sbjct: 171 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 230

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235
            +P +  +          S      G    S    E+             ++ + L+LG+
Sbjct: 231 QLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 290

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           EG GL   T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 291 EGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 331


>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
 gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
          Length = 329

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +H       +   K        S +      + L G+  +    +     I  LL     
Sbjct: 43  NHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 101

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127
              L  +        V  V    + K+ G ++V    A+    +     D          
Sbjct: 102 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 159

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
              + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA  
Sbjct: 160 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 219

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235
            +P +  +          S      G    S    E+             ++ + L+LG+
Sbjct: 220 QLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 279

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           EG GL   T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 280 EGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320


>gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
 gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
          Length = 278

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+     E ++L+G+H V  AL NP R+  +L+ T NA A+L  DA        +  
Sbjct: 30  KEQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKL-EDAIAAGGIEPEIH 88

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL    L+ V          L++LD V DPHN+GAIL
Sbjct: 89  DPRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAIL 148

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D ++ +   G+  +G
Sbjct: 149 RSAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLG 208

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  ++   +E     +++  +AL+LGAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 209 LDGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267


>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
 gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
          Length = 361

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 11/244 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQ 99
                + F+ G + V  AL         L+      +                V  V   
Sbjct: 108 RRGETDEFVVGRNAVVEALRAGVPASSLLIAGGLEFDERVADARRLAGRAGLTVVDVGRV 167

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
            +D++    A HQGLAL   P      D            L++ LD V DP N+GA++RS
Sbjct: 168 ELDRLC-PNAPHQGLALSVPPFEYAHPDDVLAATQSAAPGLVVALDGVTDPRNLGAVVRS 226

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  +G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL+
Sbjct: 227 AAAFGANGVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 286

Query: 214 SDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D +  ++      D + L++G+EG+GL     E       + M G +++LN   A  +A
Sbjct: 287 ADGEVDIDDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIA 346

Query: 273 LYIT 276
           L   
Sbjct: 347 LAEI 350


>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
          Length = 329

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 101/282 (35%), Gaps = 26/282 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +H       +   K        S +      + L G+  +    +     I  LL     
Sbjct: 43  NHKQVASVANPLVKHCVRLRLSSVYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDG- 101

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------- 127
              L  +        V  V    + K+ G ++V    A+    +     D          
Sbjct: 102 -IELPEELYGFSG-NVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVL 159

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
              + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA  
Sbjct: 160 DEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASL 219

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGA 235
            +P +  +                 G    S    E+             ++ + L+LG+
Sbjct: 220 QLPVVSGNWSDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGS 279

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           EG GL  +T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 280 EGNGLSAETLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320


>gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 268

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I  LL  +  L  L  D +  
Sbjct: 17  DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFEPI-SLLGVERRLLELADDLD-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA    P      D +++++ ++VL+ VND  N+G
Sbjct: 75  VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L ++   GFQ
Sbjct: 135 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 194

Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ + +     + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERVR 265


>gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 283

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 103/265 (38%), Gaps = 10/265 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83
            +  +++ QS+       ++     + GV  ++ AL +    I  LL   +   L+    
Sbjct: 20  RNARFQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALEHDW-PIESLLHRIDGPPLSDWAR 78

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141
           +           V  + + ++  K        +  A   +P L  +R     L++V D  
Sbjct: 79  ELLETRSVEQIGVSAELMAELGEKTTTTAPELIAIAKTRTPRLKDLRLQSVPLIVVFDRP 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S++ + L  
Sbjct: 139 ASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILAF 198

Query: 202 MHSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +          +G        ++         L++G E +G+    ++   ++ ++ +
Sbjct: 199 RDARRASGTDLHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRDGCDTVVNIPI 258

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
            G   +L   +A AVALY       
Sbjct: 259 GGAASSLGAPSAGAVALYEIARQRK 283


>gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 339

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 79/244 (32%), Gaps = 7/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    ++   R          +      V  +
Sbjct: 94  RRQRLEETRIYGENACQAMFKNRPEAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVDDE 153

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L++V +PHN+GAI+RS  
Sbjct: 154 ELVKASGTE-HHGGVCFLIKKRNGLDVETYLQQAPAKDCVLALENVGNPHNLGAIMRSCA 212

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G+I          A +  +  GA            T   Q   +        S  
Sbjct: 213 HFGVQGVILQDVAMLESGAAVRTAEGGAEHIKGIDADGFTTTLNQFRCAGYTIVTTSSHK 272

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +    +K+ L+LG E  GL     E       +   G I++LNVS A  + L  
Sbjct: 273 GSTTLAKADLPEKMVLVLGQESDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIMLAE 332

Query: 276 TQNH 279
               
Sbjct: 333 WWRQ 336


>gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 289

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    L        RL    +   
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 77

Query: 90  PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV         + ++VG       LA           + +  S+ + VL+ VND  N+
Sbjct: 78  GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 197

Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++               + D++A+++GAEG GL P     +     + M     +L
Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257

Query: 264 NVSNAAAVALYITQN 278
           NV+ AAA+A Y    
Sbjct: 258 NVATAAALAFYERSR 272


>gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
 gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
          Length = 432

 Score =  102 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 10/255 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    L        RL    +   
Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPHALL----GTERRLAELRDDLA 220

Query: 90  PFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV         + ++VG       LA           + +  S+ + VL+ VND  N+
Sbjct: 221 GVPVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 280

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 281 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 340

Query: 208 QTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++               + D++A+++GAEG GL P     +     + M     +L
Sbjct: 341 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 400

Query: 264 NVSNAAAVALYITQN 278
           NV+ AAA+A Y    
Sbjct: 401 NVATAAALAFYERSR 415


>gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 292

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L       L    +  ++++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Ciona intestinalis]
          Length = 326

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 102/321 (31%), Gaps = 47/321 (14%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLY 52
           +LIS  +       KDS   K+ +     K+  + N  ++   Q           N FLY
Sbjct: 10  SLISSCRHILRKYGKDSKPIKISKQ----KRKTNLNHNTKARHQRFDKIETSDFGNEFLY 65

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWD--------ANLPHPFPVKTVPPQTIDKI 104
           G    + AL +  R IF++        +   D               P++ V    + +I
Sbjct: 66  GRSVCNLALLSSRRPIFKMFINSKWEVQEPEDPRVQTSLKEAEERNIPIEFVSVSDLFEI 125

Query: 105 VGKEAVHQGLALETAPLLSPTL----------DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                 HQG+ LE   L    L            +    + ++L  + DP N+G ILR+ 
Sbjct: 126 TQGF-PHQGICLEVGQLPVIPLTQDTITSLIHHKLEQCPVWVLLYDIIDPMNVGNILRTC 184

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I T + +P  S+    S+        Y                         
Sbjct: 185 HFLGVHAVIMTPQCAPLSSSACKASSGATEIMQIYSVRKPTQFIQDMSEKNWEILGTDIF 244

Query: 215 DSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK----- 261
                    +             LILG+EG G+    +E  T +  +  +    +     
Sbjct: 245 REDNNTHCPVLDVVEHKVTKPSLLILGSEGSGIPSDVKEICTKLLTIKPLKTNTENPQLS 304

Query: 262 --ALNVSNAAAVALYITQNHF 280
              LNVS A A+ L+    + 
Sbjct: 305 VPCLNVSAATAIILHQILLNR 325


>gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 278

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I   L   +       D    
Sbjct: 27  DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLTSRFDPI--ALLGVDRRLEELTDDLAH 84

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D + +++ + VL+ VND  N+G
Sbjct: 85  VDVPFYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHTRTVAVLEGVNDHENLG 144

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L  +   GFQ
Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204

Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ + +     + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 205 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 265 AAAMAFYERVR 275


>gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
 gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 292

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L       L    +  ++++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 82/152 (53%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            ++ LL++LD V DPHN+GAILR+A     D +I  +  S   +  + + + GA E +P+
Sbjct: 42  SSNPLLLILDCVQDPHNLGAILRTADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPF 101

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I+++NL   ++++ S G    G S    + L +       AL++GAEG+G+R  T+E   
Sbjct: 102 IQVTNLARTMKQLQSRGIWIFGTSDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCD 161

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + M G I  LNVS A  V LY      +
Sbjct: 162 FLLRIPMKGSIPCLNVSVATGVCLYEMVRQRS 193


>gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
          Length = 272

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
            +  ++++   A+LR        + S   K +   +       G   V A L +      
Sbjct: 4   PRHLTMQNPSKAQLR--------LWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQA 55

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLD 127
            L+  +       +   LP   P+  +  +    +    +    LA+   P       L 
Sbjct: 56  LLILEEKKDRWAAFCETLPVSLPLYGLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLM 115

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A      L++L  +N+P N+G ++R+A+ F   G++ ++      +  + ++A G++ H+
Sbjct: 116 AKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHV 175

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++  ++L+  L ++                P       +K AL+LG+E  GL     + 
Sbjct: 176 PFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHAC---GEKTALLLGSESHGLPETLLKL 232

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                H+   G+ ++L++  AAA+ +Y    
Sbjct: 233 TDEQWHIPRRGVGESLSLPQAAAILMYECVR 263


>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 233

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A+LRSA       I                ++        
Sbjct: 15  NRQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQI-HAVWPDDDMRVSGNTASGSQQWVDT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                    SDS     +       A+++G E  G+  +    A
Sbjct: 74  VKHYTFEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 DQHIIIPMRGMVQSLNVSVAAALVMYEAQRQR 165


>gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
 gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
          Length = 361

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEDDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +     ES    ++A G  E +  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAERVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L+LG E  GL      ++     ++  G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAINGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
          Length = 354

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 96/281 (34%), Gaps = 23/281 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+  ++ K+  ++  H                   K R       +   G   V   +  
Sbjct: 66  ITSAQNPKVKLMRSFH-------------------KRRTRDDGGKILAEGHRLVCDLIEG 106

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                  +++ +   A                V      ++V +           A +  
Sbjct: 107 GLTPTLVIVSPEALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVER 166

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L      Q +++ D + DP N+G ++R+A     D ++ T       +    +++ GA
Sbjct: 167 PVLPLPPTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGA 226

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P +R+ +  + ++ M + G +       ++            AL++GAE +GL   
Sbjct: 227 SFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDA 286

Query: 244 TQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +   + + G +++LN + A A+ L   Q   
Sbjct: 287 ARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQR 327


>gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 5/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    +    R          +      V  +
Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPEAIVRAWFLQEVTPRFREALKWMAANRKAYHVVEEE 181

Query: 100 TI---DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +    +      V   +           L        ++ L+ V +PHN+GAI+RS   
Sbjct: 182 EMVKAARTDHHGGVCFLIKKRVGHDAQTYLKDAPTKDCVLALEDVGNPHNVGAIMRSCAH 241

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G+I+         A +  +  GA         +      Q   +        S   
Sbjct: 242 FGVKGVISPDSSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSHKG 301

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL +    +K+ LILG E  GL   T +      ++   G I++LNVS A+ V L   
Sbjct: 302 SVPLAKAQLPEKMVLILGQEKDGLSDSTLKQGDMSIYIGGTGHIESLNVSVASGVLLAEW 361

Query: 277 QNH 279
              
Sbjct: 362 WRQ 364


>gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 250

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 9/245 (3%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPV 93
             Q+ ++  Q E     G+ TV   L +      +  L  + +A A L       +   V
Sbjct: 3   RLQRKKYRDQEEMFLGEGLRTVRELLLHLPGPDSLVALFLSPDAEALLPE--AEAYRGKV 60

Query: 94  KTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +V      ++ G E+     G   +        L      ++++ LD V DP N G IL
Sbjct: 61  FSVDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNAGTIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A  F  D +++        +    +S++G+L  +P+  + +LTD L+++   G+  + 
Sbjct: 121 RTAAWFGADALLSGPGTVDLYNPKTVRSSAGSLFSLPHYSVDSLTDELERLKQNGYGVLC 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNA 268
            S + +   E     ++  L++G E  G+       A  +  +        +++LN S +
Sbjct: 181 SSLEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRVESLNASVS 240

Query: 269 AAVAL 273
           AAV L
Sbjct: 241 AAVLL 245


>gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 281

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +  + I  LL  +  L  L  D +  
Sbjct: 30  DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFQPI-SLLGVERRLLELADDLD-G 87

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA    P      D +++++ ++VL+ VND  N+G
Sbjct: 88  VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 147

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L ++   GFQ
Sbjct: 148 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 207

Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ + +     + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 208 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 267

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 268 AAAMAFYERVR 278


>gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
          Length = 292

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L       L    +  R+++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCRSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 242

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 87/254 (34%), Gaps = 20/254 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S N+K +H  +       GV  +   L +P R         NAL  +    ++ 
Sbjct: 6   QIKLIKSLNKK-KHRLENGLFVAEGVKVIKEFLKSPFRL--------NALYSIADIFHIE 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +  + + +I   +     LA+   P  S   + V    L + LD + DP N+G
Sbjct: 57  EG-ESHIISEKDLQQISNLKTAQTALAVFEIPKSSVPDEKVE---LTLALDSIRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    +I +       +         A            TD    + S    
Sbjct: 113 TIIRMCDWFGVKQLICSLDTVDCFN----PKVVQATMGSLTRVNVIFTDLESYLLSTSNF 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
             G   D +   E  +K     ++LG E  G+  +      +   +   G     ++LNV
Sbjct: 169 KYGAFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAKISIPRHGVIKSAESLNV 228

Query: 266 SNAAAVALYITQNH 279
           + A A+ L   +  
Sbjct: 229 AMAGAIMLSEFKRR 242


>gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
 gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
          Length = 264

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 8/260 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79
            R +   K+  +     R   +       GV     A          L  T++       
Sbjct: 8   SRENPAVKQYTALASSRRRRREDGRFTTEGVKLTLEAFTAGYTP-EALFLTQDLTDSVRR 66

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           RL   A          + P    K+ G  +      +            + ++   ++L 
Sbjct: 67  RLMPVAAACRRL--YEISPSVAAKLAGAVSPQGVFGVFMMLDNRTQPVKIGSNGKYLLLS 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+A AF  DG+I +       +  + +++ G +         +L+ ++
Sbjct: 125 SLQDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVFRARACVSDDLSASI 184

Query: 200 QK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                +       + ++    L     +   A+++G EG G+ P+          + M  
Sbjct: 185 AALRAAGVPVWAAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELAALCDGALTIPMEP 244

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LN + AA V L+    
Sbjct: 245 GCESLNAAMAAGVILWEMYR 264


>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 253

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 28/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSA 59
           M +I+                   R +   +K++  +   R    +       G+  +  
Sbjct: 2   MEIITS------------------RKNPLMQKIRQLSSGGRSVREKAGEYLGDGIKLLEE 43

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL       + +  T   +        LP    +  VP   ++ I   +     L L   
Sbjct: 44  ALK------WDVPLTTVVVTPEVTPPALPAGVRLVQVPRDVMETISPMKTPQGALFLAQL 97

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +P         L++  D V DP N+G I RSA A   DG++     +   S  + ++
Sbjct: 98  SSTTPPQRLEGKRYLVL--DGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRA 155

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +P    +          S          +    + Q     + A+++G+EG+G
Sbjct: 156 TMGACFRLPVWETTVEELEGLLKTSQIPLYATALREDTVDVRQADL-GRAAVVIGSEGRG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + A     + M    ++LN ++AA V L+  
Sbjct: 215 VSQALLDRAEQTVKIPMRERCESLNAASAAVVVLWEM 251


>gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
 gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 100/263 (38%), Gaps = 10/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
                   +++ N+  +  S    +   G   V+A L      +  L+     L     +
Sbjct: 6   PRDPRLDDIRNLNKSDK--SGEGLVIAEGP-LVAARLMESRFPMRCLVGFPQKLEAFFAE 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              P   PV  V  +T+ ++ G +     +A           + +  ++ + VL+ V D 
Sbjct: 63  YGEPE-CPVYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVGEILEQARTIAVLEGVGDH 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--- 201
            NIGAI R A   + D ++     +        + + G +  +P+  +       Q+   
Sbjct: 122 ENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSMGHVLRVPFAHLEGGFTTWQRSLQ 181

Query: 202 ---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                S+   ++  +  +    E     DK+A+++GAEG GL     +     A + M  
Sbjct: 182 ALADASFTLISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LNV+ AAA++ Y  Q   +
Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264


>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
 gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
          Length = 257

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 14/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++  +       G   V+  +N+       L+ATK  L          
Sbjct: 6   KIKYIRSLELK-KNRKEEHAFLAEGNKLVNDLINH--FSCQLLVATKEWLQSHPHLQAA- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +    +   + LA+   P      +    S L + LD V DP N+G
Sbjct: 62  ---EIIEVTHEELSRASLLKTPQEVLAVFEQPHYEFDANVTEQS-LCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GA+  +     +               
Sbjct: 118 TIIRIADWFGIEHIFCSSGTADVYNPKTIQATMGAIARVKLHYCNLPDFLKSASQKNTPI 177

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
                       ++        +I+G EG G+  +  E  T    +          ++LN
Sbjct: 178 FGTFLDGENIYTQE--LPANGIIIMGNEGNGISKQIAEMVTHRILIPNYPQGCETSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 236 VAVATAIVCAEFRRR 250


>gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 251

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 95/256 (37%), Gaps = 16/256 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT N L       +  
Sbjct: 6   KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL----KMNHSA 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   + LA+   P      + +++S L + LD V DP N+G
Sbjct: 59  TANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +     S      Q + S    
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +  +   +  E  +    +++G EGKG+ P+ +       ++          ++LN
Sbjct: 174 PVYGTFLNGNIIYAESLSAHGLIVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
 gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
          Length = 265

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +  AL+     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRLEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T+      +    + + G +  +P+  +    D L ++       
Sbjct: 137 IFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGELGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +             ++A+++G EG GL  +    A  +  + M   + +LNV
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLNV 252


>gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 250

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 36/281 (12%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +IS K++EKI  LK                     Q  ++  +     + G H +  AL
Sbjct: 3   KVISSKENEKIKHLKKL-------------------QNKKYRQKFNEFLIEGDHLIDEAL 43

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            N      Q+ +TK                    +  + +  +       Q +A      
Sbjct: 44  KNNFE--CQIYSTKPNEKHD------------FLITKEVLKHVSLLVNSEQKIAKVKIKE 89

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            S     +     ++ L+++ DP NIG +LRSA++F+   II       +   + A    
Sbjct: 90  TSNDFLNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKNIIYDNLDIYNPKIIRASQG- 148

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                  +   ++                         L Q   + KI LILG EG G+ 
Sbjct: 149 AIFALNFFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTNLYQNSFDKKIVLILGNEGLGIE 208

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          + +    ++LNV+ A ++ +   +N  +K
Sbjct: 209 KEILTLIDKNVIVPI--NFESLNVAIAGSIIMSYVENKGSK 247


>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 264

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 9/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K++++  +  R       + + G H ++ AL +    +  +   ++A   L  
Sbjct: 14  SKTNPRVKQLRAAFEGRRK-LAEGQIAMEGPHLMAEALRSGME-LKAIFVREDARELLSQ 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  +  +     V  E+                    R+  L +VL+ + D
Sbjct: 72  LDLAEENAVV--LSREVFASAVATESSQGIA---ALAYPPEARMPKRSDGLFLVLERLQD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RSA AF    ++     +   +    ++++G+   IP I +        +  
Sbjct: 127 PGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFRIPVIAVEIERLFALQNA 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F             E        A+++G EG GL  +    +   A +  PG +++L
Sbjct: 187 GMRFIAAVARE--GGTPEAIDLRGGCAVMIGNEGAGLSVELLALSDERATIPCPGAVESL 244

Query: 264 NVSNAAAVALYITQNHF 280
           N + A ++ LY      
Sbjct: 245 NAAVAGSLLLYAASVQR 261


>gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2]
 gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2]
          Length = 248

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 30/266 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H                     +  ++     + G H V  A
Sbjct: 1   MKRIESAKNQKVKDWKKLHAK-------------------KERTKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L  P   + +++    A      D ++        +       I   E          A 
Sbjct: 42  LKTPG-VVKEIMVADEADFPAMIDESVAR----YVLSADAFSAIAETETPQA-----VAA 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +           + L++ D V DP N+G I+R+A A   D ++  +      +A   +SA
Sbjct: 92  VCRMPESGPFQYEKLLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP ++        +                  P  +   +   AL++G EG G+
Sbjct: 152 QGSHFHIPILKRELSELIEELKGKSVPVYGTA-LQGAVPFREAEPSQSFALLIGNEGSGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVS 266
            P          ++ + G  ++LNV+
Sbjct: 211 DPALLAQTDQNLYVPIYGKAESLNVA 236


>gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 260

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 104/256 (40%), Gaps = 12/256 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
            FN K ++  + E L L+G + V   L N   KI ++   K     L            +
Sbjct: 8   QFNNKHQNKHKKERLCLFGYNAVYEGLINN-LKIKKVYLHKE--DHLLLKLIKQKGIEYE 64

Query: 95  TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               +  D      + HQG   E                       +++VLD ++DP N 
Sbjct: 65  LHTIKWFDNQYRDLSNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNF 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWG 206
           G ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++     +G
Sbjct: 125 GGILRSCLAANVLGVIFKKDNQASINNTVIKTSLGACFYLNLIEVANLSYAIKDLQDKYG 184

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265
           F +   +   +         +K  LI+G E KG+  +  + A     + M    I++LNV
Sbjct: 185 FWSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNV 244

Query: 266 SNAAAVALYITQNHFA 281
           S A  + L+  +    
Sbjct: 245 SVATGIMLFNMKQKIK 260


>gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 251

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT N L R++  A   
Sbjct: 6   KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GHFPCKLLIATSNWL-RMNHSATAN 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   + LA+   P      + +++S L + LD V DP N+G
Sbjct: 62  ---EIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +     S      Q + S    
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLTDI 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +  +   +  E  +    +++G EGKG+ P+ +       ++          ++LN
Sbjct: 174 PVYGTFLNGNIIYAESLSAHGLIVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 269

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 6/242 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  +     + R   +           +  AL    R     L  +  L  L      
Sbjct: 14  ADYVSLTDVALRRRTEPERGLYIAESEKVIRRALAAGHRP-RSYLMAERWLTDLGDLVAQ 72

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV       I+   G       LA    P L    + V +++ ++V++ V D  
Sbjct: 73  AEQDGIPVFVADHDVIEGFTGFHLHRGTLASMQRPELKSVEEVVADARRVLVIEDVVDHT 132

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ RSA A   D ++ T R +        + + G +  +P+ RI      +  +   
Sbjct: 133 NVGAVFRSAAALGMDAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINLLRDS 192

Query: 206 GFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF                      +++AL+LG EG GL  +T E A  +  + M G + +
Sbjct: 193 GFTVAALALSDDAVGLDELAANPPERLALVLGTEGDGLSRRTVEGADVVVKIPMAGGVDS 252

Query: 263 LN 264
           LN
Sbjct: 253 LN 254


>gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 257

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 87/283 (30%), Gaps = 28/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LIS                   R++   K +     ++     P  L L GVH   A 
Sbjct: 1   MKLISS------------------RDNPTVKTLHRLLDQAGRRGAP--LLLEGVHLCEAW 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L         +   +                         + + +      QG+A     
Sbjct: 41  LQRHGLPEQAVFDYERLDRPELAHLAREVSEARCIALESRLMRGLASVESDQGVAFVVRA 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + V  + +L+  D + DP N+G +LR+  A            + + S  + +S 
Sbjct: 101 PQLSLPERVGTNCVLL--DRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSG 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA      + I    D               + D    L        +A + G EG+G+
Sbjct: 159 QGAHF---AMDIHEHVDLHALSARLDVPLAVTTLDDATSLYDTALPASLAWVFGHEGQGV 215

Query: 241 RPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNHFA 281
            P  Q  A     +   M   +++LNV  AAA+ L+  +    
Sbjct: 216 DPALQAQAALRLRIPHDMQ-AVESLNVGAAAAICLFEQRRQRI 257


>gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 292

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L      LL    +  R+++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
 gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 9/209 (4%)

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131
            ++       +   ++  P + +D++V  E  HQG+  + A      L+           
Sbjct: 1   MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNE 58

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R
Sbjct: 59  DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+  + ++   G    G  +  K        N  I L++G+EGKG+     E    +
Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFL 178

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
            HL M G + +LN S AA++ +Y      
Sbjct: 179 IHLPMVGKVTSLNASVAASLLMYEVYRKR 207


>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 428

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 23/292 (7%)

Query: 4   ISKKKSEKIFSLKDSHYA-----KLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGV 54
           I   +   + S +    +         ++    +  S N   +    P       +++G 
Sbjct: 135 IKSNEYSYLKSKEKPRNSFNQSQTRFSSNAQQTENYSENSSKKFQLSPNERNYEDWIWGK 194

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAV 110
           H+V AAL N  R I ++  T    +   +   L         ++ VP   + ++    AV
Sbjct: 195 HSVFAAL-NSERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQLTS-GAV 252

Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+AL+ A   S +L+          ++ +++ LD V DPHN GAI+RSA AF C GII
Sbjct: 253 HQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEAFDCKGII 312

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R S   +  +AK A+GALEHIP  R+ NL  A+ ++   GF  IGLS D + P+ + 
Sbjct: 313 VPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDGQVPISEF 372

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALY 274
            +   + +I+GAE KG+    Q+    +  + + G   +LN S AAA+   Y
Sbjct: 373 KEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCY 424


>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 237

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 22/248 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+++S +QK ++  +       G+  V   L++    +                  LP  
Sbjct: 8   KRIRSLHQK-KYRIREGQFLAEGMKLVGELLDSGLEPVGLYSTAPE---------ELPGS 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+     +    +V    V             P  + +      + LD V DP N+G +
Sbjct: 58  QPITEGELRKASALVRPSGV-------LGVFPIPDPEPLTFEGWTLALDGVRDPGNLGTL 110

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F    ++ +       +  + ++  G++  +  +                  ++
Sbjct: 111 IRLCDWFGIGELLCSPDTVDCYNPKVLQATMGSIARVRVVYKDLAETLDASGLPVYGASM 170

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +   +            L++G+E  GL    ++  +    +   G  ++LNV+ AAA
Sbjct: 171 EGEAIGGEQPL-----SPGILVMGSESHGLSGPVRDRLSQTWAIPSFGRAESLNVATAAA 225

Query: 271 VALYITQN 278
           + LY  + 
Sbjct: 226 ILLYEIRR 233


>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 235

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 93/253 (36%), Gaps = 24/253 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K     ++K ++  +   + + G H +  A                 + +     
Sbjct: 7   QNDFVKHCTKLSKK-KYRDEHNEVLIEGEHLIQEA-------------NTAGIVKKTIGL 52

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +     Q +   +     HQ   +          D        ++ D V DP 
Sbjct: 53  TESDDVQITEHIAQKLSNTIS--GSHQFAIISKPQRELKEADRY------LICDGVQDPG 104

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A +F  D +I ++      +  + +S  G++ HIP IR+     A+ ++ +W
Sbjct: 105 NLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMPLD-VAIAQIKAW 163

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                           Q+IK   IA+++G+EG G+     +       +      ++LNV
Sbjct: 164 NIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCDGTVKIETS-QFESLNV 222

Query: 266 SNAAAVALYITQN 278
           + A+A+  Y  + 
Sbjct: 223 AIASAIICYTLRK 235


>gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
 gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
          Length = 212

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131
            ++       +   ++  P + +D++V  E  HQG+  + A      L+           
Sbjct: 1   MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R
Sbjct: 59  DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+  + ++   G    G  +  K        N  I L++G+EGKG+     E    +
Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFL 178

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M G + +LN S AA++ +Y      
Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207


>gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 292

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L       L    +  ++++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+ALI G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 383

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   +    L +  + G+  +  SS 
Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 276 TQNH 279
               
Sbjct: 377 WWRQ 380


>gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 267

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----L 81
           ++   K ++S  +  +H  +       G+  ++ A     R    LL  +   A      
Sbjct: 10  SNPTVKFVRSLRE-KKHRRRERKFLAEGLRLLTDA-REGGRLPEILLMAEGREAHPLLDE 67

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              A       V  +P   + K+ GKE       +      S  L     + + +V   +
Sbjct: 68  LEQAVDAAGGEVIELPLDILSKVTGKENPQAVAGVFAEWDTSIRLIDRNAAPIWLVAHAM 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+A A    G+I         S    +++ GA+      +     + +  
Sbjct: 128 RDPGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGAIFTEKLAQARWD-EFIAW 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +   Q +  S     P           +++G E +GL    +        + M G   
Sbjct: 187 LRAGEGQLVAASLRDAVPYRGAPYVAPCFVMVGNESRGLPEDYELACDLRVTMPMKGRAD 246

Query: 262 ALNVSNAAAVALYIT 276
           +LN + A AV  Y  
Sbjct: 247 SLNAAVAGAVLAYEV 261


>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 280

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 109/299 (36%), Gaps = 38/299 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  +S+++                  K ++S + +    S+     + G   V  A
Sbjct: 1   MTEITSTRSDRV------------------KMVRSLSGRP-ARSRTGRFLVEGPQGVREA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIV----GKEAVHQGL 114
           + +    +  +  T  +  R            V      P+ I+ +     G  AV    
Sbjct: 42  VRHRPEAVRDVYLTAESRDRYREIVADAEAARVYFHVTTPEVIEAMSPDSQGVLAVLDLP 101

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A    P  +      R  +L+ VL +V DP N GA++R+A A   D ++ T       S 
Sbjct: 102 APGDGPEAALDAALARAPRLVAVLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSP 161

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQ 222
            + +S +G+L H+P +    L   +  + + G QT+                    P   
Sbjct: 162 KVVRSTAGSLFHLPVVTGVPLDQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGV 221

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
                  A + G E  GL    +  A ++  + + G+ ++LN++ AA V LY +     
Sbjct: 222 PDLAAHSAWVFGNEAWGLTEDERGLADAVVRVPIRGLAESLNLATAATVCLYASSRAQR 280


>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 274

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 16/267 (5%)

Query: 24  RRNHRDYKKMQSFN----QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            + +  +K++++      +  +         L G+H V   +      +  LL ++  L 
Sbjct: 8   SKENPLFKEIRNLQATGSKGQKSRMASGQALLEGIHLVQTWV--GDPALKTLLTSEVGLK 65

Query: 80  RLD------WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRN 131
            L+          +     V  +     D +    +     GL       L+        
Sbjct: 66  NLEISQAVYEHLEICPSTKVFQLDGALWDLLSDLVSAPHIAGLLDLPKSTLTTPQSIATL 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              +++L  V D  N+G+ILR+A A      I     +   S  + ++  GA   +  + 
Sbjct: 126 DGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLWSTKVLRAGMGAH-KLLDLY 184

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                  +    +         ++      ++     +A ++G+EG+G+       A   
Sbjct: 185 EGWSNQQVLSAITAPLLAATADAEQDLYSLKKDLLHPVAWVMGSEGQGISEDLLAQAKG- 243

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             + +   +++LNVS AAA+ L+ T  
Sbjct: 244 VSIPIDPRVESLNVSTAAAICLFETLR 270


>gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri
           ES114]
 gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114]
          Length = 248

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           N +++G+H   A L     +  ++   K     RL    N      F ++ +P +T+D  
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+                 + +   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGK-GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + Q      +A+++GAE +     K  +T   +  + M G + +L VS A+ + L+   
Sbjct: 182 DVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAV 241

Query: 278 NHFA 281
              A
Sbjct: 242 RQRA 245


>gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 279

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 100/277 (36%), Gaps = 16/277 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  L+D    +L      Y  M     +    S            +  AL    R +  L
Sbjct: 3   IIHLEDLDDPRL----AAYSGMTDAQLRDCPDSTHGLFIGESRKVIERALAAGVR-MRSL 57

Query: 72  LATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
              +  L +    +D   +    FPV     +    + G E     LA    P L    D
Sbjct: 58  FMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVED 117

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + +++ + VL+ V +  NIGA+ RSA A   D ++ T           A+ + G +  +
Sbjct: 118 LLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQV 177

Query: 188 PYIRISNLTDALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGL 240
           P+ RI +      +                          E+    DK+AL+LG EG GL
Sbjct: 178 PWTRIGSERAWAAEGVPLLRSLGFSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGL 237

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P T         + M   + +LNV+ A+AVA +  +
Sbjct: 238 APSTIANCDYTVKIPMDHDVDSLNVAAASAVAFWELR 274


>gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
 gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
          Length = 249

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 92/245 (37%), Gaps = 10/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +++ +QK ++  Q +  F+ G  +V   +N+       L+  +          NL 
Sbjct: 6   TVKFIKTLHQK-KYRIQSQKFFVEGEKSVLEVINSGFLIDMILVTERFYERHEGKLKNL- 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +       ++ I    +     AL    +      +   ++L++ LD V DP N+G
Sbjct: 64  -NAEILHATQNQLENIGQYRSNE--TALAVVNMKPNDRFSFPENELVIALDDVRDPGNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    ++ + + +   +  + +S+ G+   + +          +        
Sbjct: 121 TIIRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNFYYGDLKEVFEEWGVPIYGA 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G S+  +             L++G E  G+  + +   +    +   G  ++LNV+ A
Sbjct: 181 YLGGSNIHELKSPAAG-----VLLMGNESNGISKELEPFVSKKLTIPGSGEAESLNVAIA 235

Query: 269 AAVAL 273
            A+  
Sbjct: 236 TAILC 240


>gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7]
          Length = 234

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 8/224 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVS 230


>gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074]
 gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074]
 gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074]
          Length = 267

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 5/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A+      +  LL ++  L  +  D    
Sbjct: 17  DYTDLTDVALRRRREPAEGLFIAEGEKVIRRAVEAGYT-LRSLLLSEKWLD-VMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V P+  +++ G       LA      L    D +  ++ + VL+ + D  N+G
Sbjct: 75  ADAPVHLVTPELAEQVTGYHVHRGALAAMERKPLPDPADILTTARRVAVLEDIVDHANVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A  R+A A   D ++ + R +        K + GA+  +P+ R+ +       +   GF 
Sbjct: 135 AAFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGAGLLGRHGFL 194

Query: 209 TIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           T       +          + +K+AL+ G EG GL P     A +   + M   I +LNV
Sbjct: 195 TAAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWVRIPMDAGIDSLNV 254


>gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
 gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
           Enzyme
 gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
          Length = 211

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++  D+V + HN  AI+R+  A     +                +          
Sbjct: 22  RQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIE 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              + +   L+  +          S       +        L++G E +G+ P+  E A 
Sbjct: 82  KVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIAD 141

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G+ ++LNVS A  + LY  Q    +
Sbjct: 142 KKIVIPMYGMAQSLNVSVATGIILYEAQRQREE 174


>gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 78/244 (31%), Gaps = 7/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 127 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDDE 186

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L    ++  ++ L+ V +PHN+G I+R+  
Sbjct: 187 ELTKASGTE-HHGGVCFLIKKRNGLDARSYLKTAADTDCVLALEDVGNPHNLGGIMRTCA 245

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++          A +  +  GA                +   +        S  
Sbjct: 246 HFGVKGLMVQDASMLESGAAVRTAEGGAEHIQAIDADGFDGALDEFRRAGYTIVTTSSHK 305

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL +     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 306 GTTPLTKATLPKKMVLVLGQERDGLSETVMQQGDLSLSIGGTGQVESLNVSVATGILLAE 365

Query: 276 TQNH 279
               
Sbjct: 366 WWRQ 369


>gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 275

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 92/262 (35%), Gaps = 16/262 (6%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           ++    +++      +     +     + G   VS  L +  +  +  L  T+   A   
Sbjct: 9   DNPGSDRIRKVAGLSRRSARLRSGMTRVEGPQAVSELLRSAPQGAVTDLYVTEAGAATRP 68

Query: 83  WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
                           + TV PQ    +       QG          P++       L +
Sbjct: 69  ELLEFAQSTVSAGGLHIHTVSPQVEKTLSDA---AQGWIAVARFEAFPSVTGSPEGNLAL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           +L    DP N G ++R A A     +   +  + + S  + +++ G++ H+P  R  +  
Sbjct: 126 ILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             +     +  +    ++               N K+A ++G E  GL    +     + 
Sbjct: 186 AVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LNV++AA + L+
Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267


>gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
 gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 12/249 (4%)

Query: 42  HTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKT 95
              QP     +LYG + V+ AL    R+  +L                +A      PV  
Sbjct: 2   RRLQPGRPSEYLYGRNAVAEALR-GRRRHRRLFVASGIETHGRIVALMEAARVRGIPVIV 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +P   +D++VG    HQG+ LET+P        L       ++++LDH+ DP NI  +LR
Sbjct: 61  IPRSELDRMVG-SVNHQGVVLETSPYPYVDFATLLDPAPESIVLLLDHLQDPQNIATLLR 119

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    G++  +R +   +  +  +++GA+EH+    ++NL  A+  +   G+  + L
Sbjct: 120 TAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTLREHGYWIVAL 179

Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
               + + L +      + L++GAEG GL P   + A     + M G I++LN + A ++
Sbjct: 180 EPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSI 239

Query: 272 ALYITQNHF 280
           ALY      
Sbjct: 240 ALYEIVRRL 248


>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 263

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   +      +      +     L G   +  AL +  R +  +  T  A  +   
Sbjct: 6   SRDNPLVRDYVRLRENRAFRRETGRFVLEGARLLGDALESGVR-METVFFTGEACEKHPA 64

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V  V      K+    A     A       +  LD +        L+++
Sbjct: 65  LLASARDGGARVCLVGDAVAAKLADTAAPQGVFAAAFMLDKAFALDKINLGGAYAALENI 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA+LR+A A    G++ +   +   +  + +++ GA+    + +  +L  AL  
Sbjct: 125 RDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVFRTAFFQTEDLPAALSL 184

Query: 202 MHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   G QT+   +     L  Q      +   +G EG GL     +       + M G  
Sbjct: 185 LREKGLQTLAALAGGTTRLLTQLDLRGGVVAAIGNEGAGLSDACVDACD-PFTIPMKGRA 243

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + AAA+ L+      
Sbjct: 244 ESLNAAAAAAIILWEIMRSR 263


>gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 383

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGENDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   +    L +    G+  +  SS 
Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRHAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 276 TQNH 279
               
Sbjct: 377 WWRQ 380


>gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 278

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 7/253 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I  L        RL+  A   
Sbjct: 27  DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLASRFDPIALL----GVDRRLEELAGDL 82

Query: 89  HPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               V         + ++VG       LA    P      D + +S+ + VL+ VND  N
Sbjct: 83  DGVDVPYYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHSRTVAVLEGVNDHEN 142

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G++ R+A     D ++  K  +        + + G +  +P+  ++     L  +   G
Sbjct: 143 LGSMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERG 202

Query: 207 FQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           FQ I L+ +       + +  +K+AL+LGAEG GL           A + M     +LNV
Sbjct: 203 FQLISLTPNPGAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNV 262

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 263 ATAAAMAFYERVR 275


>gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
 gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
          Length = 250

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 7/230 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           LYG + V   L + S ++ +L        +   +            +      ++ +I  
Sbjct: 20  LYGRNVVVEVLQDSSVEVHKLHMASSNKPDGAIKTILALAKTRKIEITYHEKSSLSRISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                QG+A++       +   +++     L+ LD + +P N+G I+RS  A + DGII 
Sbjct: 80  NAKQDQGVAVDIIAQTYKSAHEIKDMKSFRLIALDGIQNPQNLGMIIRSCAAGNVDGIIL 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+ S   S ++ K++SG L  +P    + L +    + +       LSS +K  +   +
Sbjct: 140 PKKSSAKISPLVIKASSGTLFKLPIYYCNTLDEIFPDLDADTRIYS-LSSHAKTSIYDVV 198

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +K   +LG E  G+ P+ ++       + M   +++LNV+  A++  +
Sbjct: 199 PTEKSIFVLGNESDGVSPEVEKLCNDSISIPMQRGVESLNVAVTASLLAF 248


>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 249

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 17/256 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            H   K +    + SR+  + + L L G   +   L+     + +++ T      L ++ 
Sbjct: 10  QHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLS----FVKKIIYTSAYAPYLTFE- 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                F    V    + KI G  +  +G+  E       +L   + +Q ++VLD +NDP 
Sbjct: 65  ----GFEKWQVTEGIMKKISG-NSTPEGVIAEIQMPPFSSL---KQAQNILVLDGINDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A+AF  +GI          +  + +SA GA  H          + L+ +   
Sbjct: 117 NLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGA--HFKIPLRRGNINELELLAKQ 174

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G     ++    + L+  +   +  LI+G E  G  P+  + A     + M G +++LNV
Sbjct: 175 GNFQTLVADLKGQILKSTVSKKRKILIMGNEAHGPSPEVFKFA-EPICIPMSGEMESLNV 233

Query: 266 SNAAAVALYITQNHFA 281
           + A  + LY   N   
Sbjct: 234 AVAGGILLY-ALNQMN 248


>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
 gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
          Length = 285

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 11/266 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDW 83
           +   K +++   K ++  +       G      AL+        L A     +   R   
Sbjct: 18  NPRVKSIRALAMK-KNRDREGLFIAEGEKLARDALDGGWHIDTLLYAKSATDDERRREGL 76

Query: 84  D----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +            V     + +  I  ++     +++  +          +     +VLD
Sbjct: 77  ETLAVKVRARGGDVLLTNAKVLTAITKRDNSQAVVSVLKSQTTDAAKITPQGDTCWLVLD 136

Query: 140 HVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            V DP N+G I+R+A A    G++    T      E+      +  A   +   R   L 
Sbjct: 137 RVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRATMGSLFAKPLVRLSRADYLV 196

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A       G       + +      +     + L++G E +GL  +   +   +A + M
Sbjct: 197 LAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPLLLLMGNEQQGLDDEMAASCDHLALIAM 256

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G   +LN++ A  +  +  ++H  K
Sbjct: 257 GGAADSLNLAVATGIVTFAARSHALK 282


>gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 330

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 32/306 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62
           + K  ++++    ++ AK     R     +   ++   +  S   +  +YG ++V  AL 
Sbjct: 25  TPKAEDRVYH--KAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALR 82

Query: 63  NPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                   L        +   R        +   +       +D+I  +   HQG+ L+ 
Sbjct: 83  VG-VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKV 140

Query: 119 APLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L+                      +    L + LD V DP N+GA++RSA AF
Sbjct: 141 DPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAF 200

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     
Sbjct: 201 GANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGD 260

Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K + +    +D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY  
Sbjct: 261 KLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAV 320

Query: 277 QNHFAK 282
            N   K
Sbjct: 321 SNARRK 326


>gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 333

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 32/306 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALN 62
           + K  ++++    ++ AK     R     +   ++   +  S   +  +YG ++V  AL 
Sbjct: 28  TPKAEDRVYH--KAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALR 85

Query: 63  NPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                   L        +   R        +   +       +D+I  +   HQG+ L+ 
Sbjct: 86  VG-VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKV 143

Query: 119 APLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L+                      +    L + LD V DP N+GA++RSA AF
Sbjct: 144 DPFQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAF 203

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     
Sbjct: 204 GANGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGD 263

Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K + +    +D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY  
Sbjct: 264 KLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAV 323

Query: 277 QNHFAK 282
            N   K
Sbjct: 324 SNARRK 329


>gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043]
 gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   +    L +  S G+  +  SS 
Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRSAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 276 TQNH 279
               
Sbjct: 377 WWRQ 380


>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
 gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
          Length = 278

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 89/272 (32%), Positives = 145/272 (53%), Gaps = 5/272 (1%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQL 71
              + +   K     RD++     N K          +++G H V AAL+NP+R    +L
Sbjct: 3   SHSERNDRKKPSSPGRDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKRL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--V 129
           LAT +   RL  +        +  +    I + +   AVHQG+AL+     + ++     
Sbjct: 63  LATADRAKRLAPNLAKAPFLTI--MEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLGT 120

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL++LD + DP NIGAI RSA AF   G+I   R++P+ + VLAK+A GA++ I Y
Sbjct: 121 PAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIAY 180

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ NL+ AL+++   G++ + L+ ++++ L+Q +      L+LG+EG+G+R    E   
Sbjct: 181 ARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHCD 240

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +M  + MPG  ++LNVS AAAVALY      +
Sbjct: 241 AMGKIAMPGGFESLNVSAAAAVALYEASKVRS 272


>gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 266

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW- 83
           +++   K+  +   K   + + E   + GV  +  AL+        LL T N     +  
Sbjct: 6   KHNPKIKE--ALALKRTKSRKGEFFLVEGVREIRKALDAGY-PFQHLLCTANLSEEEESL 62

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMVLD 139
                     +     +++ ++  KE     +A+                      ++++
Sbjct: 63  CQEAAKRSIAIFFFHEESLSELSYKENSGHVIAVVRKTFLSTQEFLASRRNPVPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GA+LR+      DG+I         +  + +S+ G +  +P +  S      
Sbjct: 123 QVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRSSLGTVFTLPVLCASLPEVLQ 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                     +     +KK   +E      A++ G+E  GL             L M G 
Sbjct: 183 LIRKESWEVYVTS-PRAKKLYFEETFLAPTAIVFGSEKDGLMQPWFHERFKEITLPMRGK 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S + A   Y      
Sbjct: 242 ADSLNLSTSVAAIAYEVLRQR 262


>gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 251

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 22/259 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT N          + 
Sbjct: 6   KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKIN 55

Query: 89  HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           HP     +  V  + + +   ++   + LA+   P      + +++S L + LD V DP 
Sbjct: 56  HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPFYDLNPEVIKSS-LCLALDDVQDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + I  +   +   +    ++  GAL  +     S      Q + S 
Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESL 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261
               +  +  S   +  E  +    +++G EGKG+ P+ ++      ++          +
Sbjct: 171 ADIPVYGTFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A AV     +   
Sbjct: 231 SLNVAIATAVVCSEFRRRL 249


>gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 253

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 9/247 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + +  QK +  S+ +     G   V   +  P  ++  +LA    L          
Sbjct: 6   KIKYITAL-QKKKFRSELQCFLAEGDKIVRELVAFPQWELECILAVPEWLENHRGLFA-G 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               + ++    ++KI   +  +Q +A+          +   ++ L + LD + DP N+G
Sbjct: 64  RKIEIISITTAELEKISTLQTPNQVMAI-VKMPSEFDWNTHFSTDLALYLDGIQDPGNLG 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR A  F    +  +       +  + ++  G+   I    +      +       + 
Sbjct: 123 TILRIADWFGILQVFLSPDCVELYNPKVIQATMGSFLRIKTAIVELPALKVGIPGLTTYG 182

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVS 266
            +    +  +            LI+G EGKG+R +          +     G  ++LN  
Sbjct: 183 ALLSGENVFETKV----QHPALLIIGNEGKGIREEYISLIDRAISIPRHADGGAESLNAG 238

Query: 267 NAAAVAL 273
            A  +  
Sbjct: 239 VATGIIC 245


>gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
 gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131
            ++       +   ++  P + +D++V  E  HQG+  + A      L+           
Sbjct: 1   MQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + DPHN+G+I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R
Sbjct: 59  DPFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVAR 118

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+  + ++   G    G  +  K           I L++G+EGKG+     E    +
Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFL 178

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M G + +LN S AA++ +Y      
Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207


>gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803]
          Length = 291

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 91/294 (30%), Gaps = 30/294 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I++ + E I S          R +   K+++S   K+      + + L   H V   
Sbjct: 1   MPVIARAEGEPISS----------RRNPLIKRIRSLQSKA-GRESEQCVLLEVTHQVQEL 49

Query: 61  LNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L         +  L+         D  A LP P  V+ + P+ +              + 
Sbjct: 50  LAQGEAWTDPLSVLVTPLWLQRHRDLLAQLPGPVQVQLMTPEALG---AALTTVHPDGVA 106

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS------ 171
               L     A  +   ++ LD + DP N+G +LR+A+A   + +       P       
Sbjct: 107 CLWPLKSLPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSKVVR 166

Query: 172 -------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                           + A                             +    +P  Q  
Sbjct: 167 SAAGALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPYWQLD 226

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 L+LG EG GL P+     +    L     +++LNV+ AA   L   + 
Sbjct: 227 WCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVAAAAVPLLLERRR 280


>gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 245

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 95/254 (37%), Gaps = 22/254 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S + K ++  +     + GV  +S  L N   ++ +L  T     +L ++A+  
Sbjct: 6   QIKLIKSLSLK-KNRQELGLFIVEGVKGISEFL-NSDFQLEKLFTT-----KLIFEASSD 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V    + KI   +  +  LA+   P  +   +      L++ LD + DP N+G
Sbjct: 59  QTI---EVSETELKKISSLKNPNTALAIFKTPKPTLPENVG----LIIALDAIRDPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    +    ++ +       ++ + ++  G+L  +    +       +        
Sbjct: 112 TIIRLCDWYGVKDLVCSTNTVDCYNSKVVQATMGSLTRVNVNYLDL-----ESYLESTKV 166

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
            +  +  + + +      ++  +ILG E  G+             +   G     ++LNV
Sbjct: 167 DVFGAFMNGENIYATNLPNEGVIILGNEANGISEIIASKVDRQITIPQFGENKSTESLNV 226

Query: 266 SNAAAVALYITQNH 279
           +NA A+ L      
Sbjct: 227 ANATAIILSEFSRR 240


>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 276

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 18/272 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               +N+   K+ ++F ++       +   + G H +   L +      ++L T+  L +
Sbjct: 2   KITSKNNNLVKRFRTF-KRGSSPKHQDFFCIEGTHLIEELLKSGKNP-SKILVTEKWLRK 59

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               +   H   +  V  + +   +       G+A        P          ++VLD 
Sbjct: 60  NQNLSRKFHQSLINIVTEEVLASAISTI-NPDGIAALVEISTIPNYKFDTKDDFVLVLDR 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSP-------------SESAVLAKSASGALEHI 187
           + DP N+G++ R+A+A   D I       P                  L    +      
Sbjct: 119 IQDPGNMGSLFRTALAAGVDAIFLAGGAHPLGQKVLRASSGAVFHLPFLRFDGTEEEILN 178

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             ++  +    +             S    KP  +   +   ALILG EG+G+  K QE 
Sbjct: 179 SLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQGIHKKIQEA 238

Query: 248 ATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
                 +    ++++LNV+  A  + L   + 
Sbjct: 239 FNETITIPHSELVESLNVACVAVPLLL-ERKR 269


>gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
 gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
          Length = 258

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 33/266 (12%)

Query: 37  NQKSRHTSQPENL---FLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPF 91
            ++     +PE      + G + V  AL       KIF      +A       +      
Sbjct: 2   REQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIFLARGETDATLGHIASSAREKGI 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V     + +D +    A HQG+    A     T+D +           L++V D ++DP
Sbjct: 62  VVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLIVVCDELSDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA++R+A      G+I  KR S   +AV+AK+++GA+ ++P  R+ NLT  L+++  
Sbjct: 121 HNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNLTALLKELKD 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
            G    G ++D    L         A+++G+EG G+     E       + M G      
Sbjct: 181 EGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIPMKGKLNSLN 240

Query: 260 -----IKALNVSNAAAVALYITQNHF 280
                           + LY      
Sbjct: 241 ASAAAA----------ILLYEAVRQR 256


>gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1]
          Length = 269

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 4/236 (1%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
                    +  AL +    I  L   K    +           PV T   Q +  + G 
Sbjct: 33  MFIAESPKVIRTALGSGYEPISLLTERKYIDGQAKDIIEKCGDIPVYTASSQQLTALTGY 92

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +     L       L      +  S  + VL+ V +  NIGA+ RSA A   D ++ T  
Sbjct: 93  KLTQGVLCAMKRKRLPKAEYILAKSVRVAVLEDVMNQTNIGAVFRSAAALGFDAVLLTPS 152

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226
            S        + + G +  +P+  + N +                 +  +  ++      
Sbjct: 153 SSDPLFRRSVRVSMGTVFQLPWTYLENGSPDYIGELRNAGFVTAAMALRRDTIKINDPRL 212

Query: 227 ---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              D++A++LG EG+GL+ +T ++      + M   + +LNV+ A+AVA +    H
Sbjct: 213 ASVDRLAVLLGTEGEGLKDETIDSCDYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268


>gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
 gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +  +L G HTV+ AL N +  IF++  +            L     +     Q IDK+  
Sbjct: 8   KEFWLGGKHTVNHALKNENNAIFKVFLSSKNNINEIPKKYLN---LISIKSHQEIDKLFS 64

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +  HQG A++     +     +R + +    +++L++V D  NIG+I+RS VAF    +
Sbjct: 65  TKINHQGYAVKIKERKTFQFSELRKNIIKYDEIIILNNVFDDRNIGSIIRSCVAFDVKCL 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K    + S ++ KSASG +E+I    +SNL + ++ +    +    L  +S K +  
Sbjct: 125 IVEKNNFRAGSELMNKSASGGMEYIDIYLVSNLNNVIKVLQQNAYWVYSLDGESNKNIFD 184

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              N K A I G+EG G++   ++ +  +  + +   I++LN+SN+ ++ L   +   
Sbjct: 185 IKFNKKSAFIFGSEGDGIKSLVKKNSDEIISIPINKKIESLNLSNSVSIVLSNIKKAR 242


>gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 268

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+  ++     L K           
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          ++A+++G EG GL  KT   A  +  + M   + +LNV
Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252


>gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 188

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 74/157 (47%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L    ++ L+++L+ V DPHN+GA LR+A       ++   + S   +  +   + G 
Sbjct: 31  FNLIEQTDNPLILLLEGVQDPHNLGACLRTASGAGVTALLAPMKGSCGITHTVRDVSCGG 90

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            + +P+++I N +  L+K    G Q IG S    + L          +ILG+EG GLR  
Sbjct: 91  ADEVPFLKIKNTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGSEGWGLRKV 150

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T +    +  + M G +  LNVS +A V LY      
Sbjct: 151 TGDLCDQLVSIPMAGKVDCLNVSVSAGVCLYEAVRQR 187


>gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 294

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 8/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
                  G   V  AL      + +L  T  AL R    A        PV  V    +  
Sbjct: 39  AGRFLAEGPQAVREALARAGTVV-ELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    A    +A+     +       R  +L+ VL  + DP N G +LR+A A     +I
Sbjct: 98  LTETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVI 157

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKKP 219
                    +    ++++G+L H+  +R ++   A++ +          T    SD    
Sbjct: 158 FAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDL 217

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN- 278
            +        A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +   
Sbjct: 218 ADAGRLAAPTAWLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSARA 277

Query: 279 HFA 281
             A
Sbjct: 278 QRA 280


>gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
 gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
          Length = 267

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 107/250 (42%), Gaps = 23/250 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR--------LDWDANLPHPFPVKTVPPQTI 101
            +YGV  V   L   +R+I  L    +  +R           +        V+ +  + +
Sbjct: 6   LVYGVGPVEELLGRRAREIAVLYVNPSRRSRQRAGDPVAAVAEQARRRGVSVEELSREQL 65

Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148
           D +V        G    HQG+           L+       +   L + LD V DPHN+G
Sbjct: 66  DALVAGRGDAEDGGRVHHQGVVALVGAFEYAALEDLIAAPRQRPALFVALDSVTDPHNLG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGF 207
           AI+RSA     DG+I  K  +   S V+ K ++GA E I   +++NL  AL++   +  +
Sbjct: 126 AIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVTNLARALEQLKQAEVW 185

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVS 266
                + +    L        + L+LGAEG GLRP    T   +  + M G  + +LNVS
Sbjct: 186 IAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLIEIPMLGAGVGSLNVS 245

Query: 267 NAAAVALYIT 276
            AA VALY  
Sbjct: 246 VAAGVALYEV 255


>gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda
           FL6-60]
          Length = 393

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 9/246 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 146 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFREALRWMAANRKAYHVVDDA 205

Query: 100 TIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G +  H G+                   A      ++ L++V +PHN+G I+R+
Sbjct: 206 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIMRT 264

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GII  +  +    A +  +  GA                    +        S
Sbjct: 265 CAHFGIRGIIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSAALDTFRRAGYTIVTTSS 324

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L +     KI L++G EG GL   T +       +   G +++LNVS A  + L
Sbjct: 325 HKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLQQGDLSVSIGGTGSVESLNVSVATGIML 384

Query: 274 YITQNH 279
                 
Sbjct: 385 AEWWRQ 390


>gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae]
 gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae]
          Length = 421

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + L G   +  AL    +    L + K+
Sbjct: 119 NLEFVRLTLQDPLTSTLLTTVRSKKRRDKNRQIILEGRRLIQEALQCGLKMQTLLFSQKD 178

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA +  +           +  VP   +            +A+   P        +   +
Sbjct: 179 QLALVKEEVGKAQQGTGSKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLESNLAEQE 238

Query: 134 LL--------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            +        +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 239 RVGTKPLPVTVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 298

Query: 186 HIPYIRISNLTD-----------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            IP +      +             +   +        S ++    +      +  LI+G
Sbjct: 299 RIPILDDVTWEELSNIIPPEVSSDCRVFIAENNLEKRESHETIDYADISDVGAQNFLIIG 358

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+                  ++ +   I +LNV++A  + L+  +    +
Sbjct: 359 GESHGVSEAAYRFKHLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKINQ 412


>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
 gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
          Length = 238

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 97/251 (38%), Gaps = 19/251 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +    QK ++  + +   + G H V+ AL     ++       ++   +   + 
Sbjct: 7   NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALKANQVELLISTKHIDSELEVLEVSE 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                         + K+   ++    +A           +  R     ++LD + DP N
Sbjct: 66  E------------VMAKLAFTKSPQSIMAKCRMQKEIQLKEGRRY----LLLDDLQDPGN 109

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A+AFS D +I +       +  L +S  GA  H+  I  +      Q      
Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIYGNLTQLISQLQEKGV 169

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                   + K   +    + K+A ++G EG G+ P+       + ++ +   I++LNV+
Sbjct: 170 VVIGSALENGKNIAQINRYS-KMAFVVGNEGNGMNPEVLAKCDDIGYIPIN-TIESLNVA 227

Query: 267 NAAAVALYITQ 277
            A  + +Y  +
Sbjct: 228 IAGGIMMYHFK 238


>gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
 gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
          Length = 266

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 102/249 (40%), Gaps = 19/249 (7%)

Query: 45  QPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKT 95
           + +  F     L+G   V   L +P   ++++  +++   +       +        V  
Sbjct: 13  RKKQFFNQVITLFGRKPVLEVLQDPKLTVYRVHLSESNKPQGIISEILEIAKKREIEVLY 72

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPH 145
              Q + +I       QG+ ++       + +              +  L+ LD + +P 
Sbjct: 73  HSKQALSRISKNAKQDQGVCIDILCPKHQSYEDFLASVSLSQSPDKTIRLIALDRITNPQ 132

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RS  A   DG++   +   +  +++ K+++G L   P +   +LT AL +    
Sbjct: 133 NLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGTLFKAPLLHCESLTGALHESKKQ 192

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    GLSS + + +  +  +  +  +LG E +G+  +          + M   +++LNV
Sbjct: 193 GATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQEISTLCDKRISIPMNNGVESLNV 252

Query: 266 SNAAAVALY 274
           +  A++  +
Sbjct: 253 AITASLLAF 261


>gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 267

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 104/262 (39%), Gaps = 13/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  YK+   + +        +   L G+     A+    +   + +   +A  R + 
Sbjct: 8   SKTNPSYKRWLKYCEHP--EKNRDIYLLEGLRLCRDAVEAGEKWRIREVCFNDAALRHET 65

Query: 84  DANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
                             V    +   +      QG+ +  +P          N + +++
Sbjct: 66  GHAFYQLCVNRFGASTVNVFADNLFAKLADTVSSQGIMMAVSPEGERP---TANWRRVLL 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V DP N+G+I RSA AF  D +I     +   +    +SA G++ H+P +  S+   
Sbjct: 123 LERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVPVLPFSDTEA 182

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLH 255
           A   +    F     + D +   E   ++D  KIAL +G EG GL    ++ A +  ++ 
Sbjct: 183 AYTFLKQENFWIAAATLDGRPLAEIARRHDLPKIALAIGNEGNGLSSYARKEADATVYIP 242

Query: 256 MPGIIKALNVSNAAAVALYITQ 277
           + G  ++LN + AA +  Y  +
Sbjct: 243 ISGKAESLNAACAAGILCYEFR 264


>gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19]
          Length = 290

 Score =  101 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D+   +L     D++ +   + +         +   G   V   L +    +  L
Sbjct: 12  IVHIADAEDTRLD----DFRDLNHSDNRPDLPGGKGLVIAEGPLVVGRLLQS-RFPVRCL 66

Query: 72  LATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +     L     D  +       PV ++  +T+  + G +     LA           +A
Sbjct: 67  IGFPAKLESFLSDPAMAELVRDIPVYSLDRETLASVAGFDMHRGLLAAADRVAGLSIEEA 126

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  ++ + +L+ V D  NIG++ R+A     D I+     +      + + + G +   P
Sbjct: 127 VSTARTVAILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRTP 186

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEG 237
           +          Q+                   E                DK+AL++GAEG
Sbjct: 187 FAHFGGKRTTWQRELEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAEG 246

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            GL           A + M     +LN++ +AA+A Y      
Sbjct: 247 PGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDRSL 289


>gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           HTCC2601]
          Length = 259

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++     E ++L+G+H V  AL NP R+  +L+ T NA A+L            +  
Sbjct: 11  KEQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLADAVAEA-GIAPEIH 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL    LD V          L++LD V+DPHN+GAIL
Sbjct: 70  DPRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + +S  E+  LAK+ASGALE  PY+R  NL D ++ + + G+  +G
Sbjct: 130 RSAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLG 189

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  +++  +EQ +   ++  +AL+LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 190 LDGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248


>gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi]
 gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi]
          Length = 246

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE------ 108
           +++  ++ N        ++ K++  +            +  +    +DKI+  +      
Sbjct: 7   NSIIESIKNNKG-FELYISKKSSKTKEIERLAKTQNIKIIKISINELDKILKSKDHRGFA 65

Query: 109 ------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                     G                +    +++LD + DP N GAILR+A  FS D +
Sbjct: 66  LKLKLEKNKNGKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSIDLV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   + 
Sbjct: 126 VTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYFLKKHGFWIYAGDIKGQDINKI 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +I + KIALILG E KG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 186 KINDKKIALILGNESKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 244


>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
           leucogenys]
          Length = 353

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 28/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100
                L+G+     AL    R + +LL                        PV     Q 
Sbjct: 47  SRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +   + VHQG+ +E +PL                  QL +VLD + DP N GA+LRS
Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
                              + + +    L+LG EG GL  + Q +   +  +     +P 
Sbjct: 226 GCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LNVS AA + L+   N   
Sbjct: 286 GLESLNVSVAAGILLHSICNQRK 308


>gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 275

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +      + +   +       D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFTP--RAMLGTDRRLAELRDDLTG 78

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + + VG       LA  +          V  ++ ++VL+ VND  N+G
Sbjct: 79  STAPYYRASAEVMARAVGFHLNRGVLASASRLPELTVAQVVDGARTVVVLEGVNDHENLG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAADWPADLLMLQQLGFR 198

Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++              ++   IAL++GAEG GL       +     + M     +LN
Sbjct: 199 LLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 258

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 259 VATAAALAFYERAR 272


>gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 282

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 102/263 (38%), Gaps = 9/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83
            +  +++ QS+       ++     + GV  ++ AL++    I  LL   +   L+    
Sbjct: 20  RNARFQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALDHDW-PIESLLHRIDGPPLSDWAR 78

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVN 142
           +           V  + + ++  K      L       +    +   +++ L++V D   
Sbjct: 79  ELLASRSVEQIGVSAELMAELGEKTDTAPELIAVAKTRVPRLKELRLQSAPLVVVFDRPA 138

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S++ + L   
Sbjct: 139 SPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILAFR 198

Query: 203 HSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +          +G        ++         L++G E +G+    +    ++ ++ + 
Sbjct: 199 DARRASGTELHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRNACDTVVNIPIG 258

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G   +L   +A AVALY      
Sbjct: 259 GAASSLGAPSAGAVALYEIARQR 281


>gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 8/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  + +     G       L+        +L                       V  +  
Sbjct: 23  YREEEKKFLAEGRK----FLDFTYIPDLIILKENFEDFENITTKLERFDCRKIVVNDKIF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +  +E                  +  + +  ++VLD + DP N+G I+R+A A     
Sbjct: 79  KDLTSQENSQGV----ILVYPYCETNIGKINNNIIVLDKIQDPGNLGTIIRAADAAGFKD 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II TK      +    +S+ G++ ++  + +  L              +    ++     
Sbjct: 135 IILTKGSVDCYNEKCVRSSMGSIFNMNIVYMEELQLIQFLKEKKYKFLVTALENNSIEYT 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ++K A+I G+EG G+     + A     + + G  ++LNV+ A+ + LY  +    
Sbjct: 195 DITLSEKNAIIFGSEGNGVSDNFLKVADETVIIPIYGSAESLNVAMASGIILYKVRELMN 254

Query: 282 K 282
           K
Sbjct: 255 K 255


>gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 226

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +F L    +   +       P    V+     +++K+ G    HQG+     P  +    
Sbjct: 4   LFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLP-FHQGVVAAVRPHPTLNEK 62

Query: 128 A------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       LL+ LD V DPHN+GA +R+A A     +I  +  S S +    K A+
Sbjct: 63  DLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAA 122

Query: 182 GALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           G  E + +I+++NL       K  +       +  ++  P+++   +  + +++GAE  G
Sbjct: 123 GGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTG 182

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LRP TQ      A++ M G +++LNVS A  +ALY      ++
Sbjct: 183 LRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQRSE 225


>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
 gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
           longum F8]
 gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. longum JDM301]
 gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
          Length = 330

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 28/304 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84

Query: 65  SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L        +   R        +   +       +D+I  +   HQG+ L+  P
Sbjct: 85  -VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDP 142

Query: 121 LLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L+                      +    L + LD V DP N+GA++RSA AF  
Sbjct: 143 FQYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGA 202

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     K 
Sbjct: 203 NGVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKL 262

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +    +D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY   N
Sbjct: 263 VGETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSN 322

Query: 279 HFAK 282
              K
Sbjct: 323 ARRK 326


>gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
 gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266]
          Length = 269

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    +  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
 gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
          Length = 278

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 8/245 (3%)

Query: 43  TSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100
             +    L  +G +     L      + ++   +   A  +     L     ++ V    
Sbjct: 29  RDESDGLLLCWGRNPSLEQLERSGESVERVWLARGVEAEFEAQVVRLAGRTALERVDRLA 88

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +D++ G  AVHQG+AL        +LD           L+++LD   DPHN+G+++R+A 
Sbjct: 89  LDQMTG-GAVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTAE 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +  + K+++GA    P I + N+  AL  +   GF  +GL+ +
Sbjct: 148 AAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAGE 207

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S +PL +   + +  L +GAEG GL   T+++   +A + M G  ++LN   AAA+  Y 
Sbjct: 208 SSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYE 267

Query: 276 TQNHF 280
               F
Sbjct: 268 WARRF 272


>gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
 gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
          Length = 251

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 22/259 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V   L         L+AT N          + 
Sbjct: 6   KIKYIRSLELKKK-RKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKIN 55

Query: 89  HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           HP     +  V  + + +   ++   + LA+   P      + +++S L + LD V DP 
Sbjct: 56  HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + I  +       +    ++  GAL  +     S      Q + S 
Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTVDVYNPKTVQATMGALARVKVHYCSLP----QLIESL 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261
               +  +  S   +  E  +    +++G EGKG+ P+ ++      ++          +
Sbjct: 171 ADIPVYGTFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A AV     +   
Sbjct: 231 SLNVAIATAVVCSEFRRRL 249


>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 333

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 40/286 (13%)

Query: 27  HRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
           H+ YK+ Q+ N++              + +S+ ++L + G + V  AL      S     
Sbjct: 34  HKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCGVPASTLYVA 92

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126
                +   R        H   +       +D+I  + + HQG+ ++  P    +L    
Sbjct: 93  ARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPFQYSSLAELV 151

Query: 127 -----------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                              +    L + LD V DP N+GA++RSA AF  +G+I  +R S
Sbjct: 152 ERADKKSRAMEAANSASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDK 228
            S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       + +     D 
Sbjct: 212 ASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDP 271

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ++LG+EG GL    +ET  S+A + M  ++++LN S AA + LY
Sbjct: 272 LVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
          Length = 333

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 40/286 (13%)

Query: 27  HRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP---SRKIFQ 70
           H+ YK+ Q+ N++              + +S+ ++L + G + V  AL      S     
Sbjct: 34  HKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCGVPASTLYVA 92

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL---- 126
                +   R        H   +       +D+I  + + HQG+ ++  P    +L    
Sbjct: 93  ARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPFQYSSLAELV 151

Query: 127 -----------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                              +    L + LD V DP N+GA++RSA AF  +G+I  +R S
Sbjct: 152 ERADKKSRAMEAANSTSARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDK 228
            S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       + +     D 
Sbjct: 212 ASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDP 271

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ++LG+EG GL    +ET  S+A + M  ++++LN S AA + LY
Sbjct: 272 LVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 278

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 9/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   + +         +   G   V+  L      +  L+  +  L     +  + 
Sbjct: 19  DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V  + + ++ G +     LA             +  ++ ++VL+ V D  NIG
Sbjct: 77  GDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIG 136

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +      + + + G +  +PY  ++      Q+  +    
Sbjct: 137 SMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELAD 196

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                       E     D      K+AL++GAEG GL           A + M     +
Sbjct: 197 AGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDS 256

Query: 263 LNVSNAAAVALYITQN-HF 280
           LN++ +AA+A Y       
Sbjct: 257 LNLATSAAIAFYERDRSQR 275


>gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 382

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 138 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 197

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+G I+RS  
Sbjct: 198 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTADEHDCVLALEDVGNPHNLGGIMRSCA 256

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   GI+  +  +  ES    ++A G  EH+  I   +    L +    G+  +  SS 
Sbjct: 257 HFGVKGILV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRRAGYTIVTTSSH 315

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 316 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 375

Query: 276 TQNH 279
               
Sbjct: 376 WWRQ 379


>gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
          Length = 301

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 9/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   + +         +   G   V+  L      +  L+  +  L     +  + 
Sbjct: 42  DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 99

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V  + + ++ G +     LA             +  ++ ++VL+ V D  NIG
Sbjct: 100 GDIPVYEVTREVLAEVAGFDMHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIG 159

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +      + + + G +  +PY  ++      Q+  +    
Sbjct: 160 SMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELAD 219

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                       E     D      K+AL++GAEG GL           A + M     +
Sbjct: 220 AGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDS 279

Query: 263 LNVSNAAAVALYITQN-HF 280
           LN++ +AA+A Y       
Sbjct: 280 LNLATSAAIAFYERDRSQR 298


>gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 257

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 11/236 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  + +     G       L       + L         ++         P+ ++  +  
Sbjct: 26  YREEAKLFLAEGRK----FLEYSENASYVLFRED---IPIEETILEKFNCPIISLSSKCF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +K+     V +             +   R+++ L++LD + DP N+G I+R   A     
Sbjct: 79  EKVS----VQENSQGVIILYSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II TK      +  + +S+ G++ H+    +  +              +    +   P  
Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYM 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   +++ A + G EG G+  +  E A     + + G  ++LNV+ A  + L+ ++
Sbjct: 195 EMSLDERNAFVFGNEGHGVSKEFLEIADEKVIIPISGQAESLNVAMALGILLFYSR 250


>gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 104/276 (37%), Gaps = 25/276 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             +K+ +   +S    +     + G   V + L++      ++ AT+           L 
Sbjct: 17  RVRKVAALAGRS-ARRKQGRFRIEGPQAVRSLLSHRPDLAREVFATERTAGDHPELITLA 75

Query: 89  HPFPV--KTVPPQTIDKIV--------------GKEAVHQGL--------ALETAPLLSP 124
               V  + V  Q +  +V              G     QG+        A   A   + 
Sbjct: 76  RDAAVALRIVDEQIVRALVREPAGEGADDGTAAGTLVSPQGVVAVGTLPEADAAAATGAL 135

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +   ++VL  V DP N+G ++R+A A   D ++ T+  +   S    ++A+G+L
Sbjct: 136 RALPGEDPATVVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSL 195

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H+P +  + + D L  + + G      S  +   L       +IA I G E  GL   T
Sbjct: 196 FHLPVLTGAEIGDVLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGNEAHGLDRAT 255

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + + G  ++LNV  AA V L+ T    
Sbjct: 256 LDAAPLRVRIPLAGRAESLNVHTAATVCLFETLRRR 291


>gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 256

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 87/254 (34%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             +++ YK ++  ++K ++  +       G   +            +++  ++    L+ 
Sbjct: 7   SPDNKFYKILRKLDKK-KYRDKNNIFKAEGEKFLKE-----KINFTKIIIKESKYEYLEN 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  +     D+I  +E                          +++LD V D
Sbjct: 61  KYKITQFNNLTILKDDLFDEISEQENSQGV----IVLYSKLLTSIEEIDGDVVILDDVQD 116

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG I+R+  A     +I TK      +    ++  G +     I  +          
Sbjct: 117 PGNIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGGIFKSNIIYETPERITEFLKD 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +       L   +          +K A I G EG G+     E+    A + + G + +L
Sbjct: 177 NNYQVISTLLDKNSIDYRDVELKEKNAYIFGNEGHGISDIFIESTDIKAIIPIYGDVDSL 236

Query: 264 NVSNAAAVALYITQ 277
           NVS A+ + LY  +
Sbjct: 237 NVSVASGIFLYKMR 250


>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
 gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
          Length = 269

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 25/279 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+ K                  N+R  +      QK ++  + +   + G+      
Sbjct: 1   MEHITSK------------------NNRWIRLAIRLKQK-KYRDKNKMFLMEGLRNAED- 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVGKEAVHQGLALE 117
           + N        L                    +  +     + + +++      QG+ L 
Sbjct: 41  VQNQEISDIVCLVQSERAENGSVQHIFERGENLHWLFCEVEEPLMRLISGTENGQGIILL 100

Query: 118 TAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                               ++LD V DP N+GAI+R+A A  C G++ TK  +   S  
Sbjct: 101 VKQPYVMDYPQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEK 160

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S+ G++  +P     ++    +         IG S  + +         +   I G 
Sbjct: 161 VVRSSMGSILRLPIYHDLDIEFLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIFGN 220

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG G+ P+  +       + M G +++LNVS+ AA+ L+
Sbjct: 221 EGSGISPEILDLTDWNVFIPMAGTVESLNVSSTAAIILF 259


>gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
 gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
          Length = 212

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRN 131
            ++       +   ++  P + +D++V  E  HQG+  + A      L+           
Sbjct: 1   MQIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNE 58

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R
Sbjct: 59  DPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVAR 118

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+  + ++   G    G  +  K           I L++G+EGKG+     E    +
Sbjct: 119 VTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFL 178

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M G + +LN S AA++ +Y      
Sbjct: 179 ITLPMVGKVTSLNASVAASLLMYEVYRKR 207


>gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 250

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 21/250 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +Q  +QK +H S+     + G  ++   +     K   + AT    A L         
Sbjct: 8   KLVQKLSQK-KHRSETGLFVVEGKKSIVEFVEAGY-KAEVIYATDTFSASLGQQ------ 59

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+  V  + + K+   +   +G+A+   P     L       L++ LD++ DP N+G +
Sbjct: 60  -PLTLVSKEELSKLSTLKHPDEGVAIFRQPKRKGIL----QEGLILALDNIQDPGNLGTL 114

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F  + ++ +++     +  + +++ G+L  +    +      +         T+
Sbjct: 115 IRLCDWFGIETLLCSEQTVDCYNPKVVQASMGSLSRVEVHYLPLAGFLVTCDLPVYVATL 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
                           +   ++LG E  G+ P+    A     +   G     ++LNV+ 
Sbjct: 175 AGEDLYT-----TTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKRQQAESLNVAM 229

Query: 268 AAAVALYITQ 277
           A A+ +   +
Sbjct: 230 AGAIIVSQIK 239


>gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
 gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
          Length = 255

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 113/247 (45%), Gaps = 9/247 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP 92
           + +S   ++ + L +YG + V  AL++P+    +L       K+   +    A+      
Sbjct: 2   SDRSSLENRHQILTIYGRNAVFEALSDPTIACLRLHWATSNQKSPATKRILQASEARGID 61

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNI 147
           V+    +T+ +I       QG+AL+       + D +++S       ++ LD + +P N+
Sbjct: 62  VREHTRKTLSRISRNGKQDQGVALDITCEKFSSFDELKDSLSTSSLRILALDGITNPQNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+RSAVA   D I+  K+   +   ++ K+++G +   P I   +L  AL+++   G 
Sbjct: 122 GMIIRSAVAGGIDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDSLAPALEQLQIGGA 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               L  +S   L        +  +LG E  G+  +    A    H+ M   +++LNV+ 
Sbjct: 182 AIATLEGNSATSLFTYRPAKSVVYVLGGESDGVSSQVSNLADIKLHIPMGSGVESLNVAV 241

Query: 268 AAAVALY 274
           AA++  Y
Sbjct: 242 AASLVAY 248


>gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 230

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 7/226 (3%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG +    ALN+   KI +    K+   +   D  +      + +      +  GK+A  
Sbjct: 7   YGKNPFFEALNSN--KIIKAYIRKDDRIK---DLLIRKKILFEELTADKHKEKFGKDAQG 61

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                E        L     +  + +LDH+ DPHN GAI+R+   F     I  K     
Sbjct: 62  YAFEFEVEYCDLDELGQNSGN--ICILDHIQDPHNFGAIVRAGHCFGVRNFIIAKDNQSP 119

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + V+ KS++GA  +  +  + N+  +++++   G+       + +  L     N+   +
Sbjct: 120 VTPVVVKSSAGAAIYSRFYEVVNINRSIEELKEKGYWIYAADMNGETKLGDIRPNEPYVV 179

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           I+G+EG+G+R    + A  +  + M G+I +LN S +AA+A Y   
Sbjct: 180 IIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFYHFY 225


>gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
          Length = 269

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    +  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
 gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
 gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 269

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    +  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 256

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 16/256 (6%)

Query: 35  SFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHP 90
                 +          +YG   V  AL +P+  + +++     +         A     
Sbjct: 4   KQATSPKDR-----FLTVYGRKPVLEALRDPALDVDKVIMADTVRGPAIAEIQRAAEARG 58

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHN 146
            PV+      +  + G     QG+  +        L    +       L+VLD +    N
Sbjct: 59  VPVRRASAHRVKVLAGNGKQDQGVLADVVAPRMRPLAAALEGRTPPSPLLVLDGITTSAN 118

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ILR+A A    G++  +R   +   ++ K+++G     P +R +   +A++ +   G
Sbjct: 119 VGMILRTATAAGIPGVVVPRRGVAALDPLVVKASAGVAFRAPVLRCATAVEAVESLVEVG 178

Query: 207 FQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +    L + +          D   ++A +LG E +G+     +       + MPG +++L
Sbjct: 179 YTVYALGARADAESTSLFDTDVPSRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESL 238

Query: 264 NVSNAAAVALYITQNH 279
           NVS AAAV  +     
Sbjct: 239 NVSAAAAVVCFDLVRR 254


>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
 gi|48425869|pdb|1V2X|A Chain A, Trmh
 gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
 gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
          Length = 194

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++L++V+ PHN+ AILR+  A                +       S    ++  
Sbjct: 19  RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYLRV 78

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +      K   +      L  D  +   +       A++ GAE  G+  +    A 
Sbjct: 79  HPDLHEAFRFLKERGFTVYATALRED-ARDFREVDYTKPTAVLFGAEKWGVSEEALALAD 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G++++LNVS AAAV L+  Q    K
Sbjct: 138 GAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 170


>gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 267

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 78/246 (31%), Gaps = 9/246 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 20  RRQRAEETRVYGENACQALFASRPEAIVRAWFLQSVTPRFRDALRWMAANRKAYHVVDDA 79

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G +  H G+        S            +    ++ L++V +PHN+G I+R+
Sbjct: 80  ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLASQAEQAVDCVLALENVANPHNLGGIMRT 138

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GI+  +  +    A +  +  GA                    +        S
Sbjct: 139 CAHFGIRGIMAPESAALESGAAVRTAEGGAEHVQAIDAEDFAATLDTFRRAGYTIVTTSS 198

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L +     KI L++G EG GL   T         +   G +++LNVS A  + L
Sbjct: 199 HKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLRQGDLSISIGGTGSVESLNVSVATGIML 258

Query: 274 YITQNH 279
                 
Sbjct: 259 AEWWRQ 264


>gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 294

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 7/239 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
                  G   V  AL      + +L  T  AL R    A        PV  V    +  
Sbjct: 39  AGRFLAEGPQAVREALARTGTVV-ELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +    A    +A+     +       R  +L+ VL  + DP N G +LR+A A     +I
Sbjct: 98  LTETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVI 157

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH----SWGFQTIGLSSDSKKP 219
                    +    ++++G+L H+  +R ++   A++ +          T    SD    
Sbjct: 158 FAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDL 217

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +  
Sbjct: 218 ADAGRLAAPTAWLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSAR 276


>gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 93/263 (35%), Gaps = 10/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
                   +++ N+  +  S    +   G   V + L      +  L+     +     +
Sbjct: 6   PADPRLHDIRNLNKSDK--SGEGLVIAEGP-LVVSRLAESRFPMRCLVGFPKKVEAYISE 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              P   P+  V  +T+ ++ G +     +A           + V +++ + VL+ V D 
Sbjct: 63  YGEPE-CPIYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVSEIVDSAKTIAVLEGVGDH 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI R A     D ++     +        + + G +  +P+  +       Q+   
Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                           E           DK+A+++GAEG GL     +     A + M  
Sbjct: 182 ALADASFTLISLTPNPEAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LNV+ AAA++ Y  Q   +
Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264


>gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
 gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
          Length = 255

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 22/252 (8%)

Query: 50  FLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + G H++   L   + +    I    A      +                    +D + 
Sbjct: 3   IISGFHSIEERLRASTAEERSGITLYYAKSGPRVKKIIAQAGQLGVQCIQSTDAQLDSMA 62

Query: 106 G-----------------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                             K+   +G     +          + S L+++ D + DPHNIG
Sbjct: 63  SSLPESLRAHRGVLLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHNIG 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA  F  D +I  +R+S  +S ++AK ++GA   +P I + NL    ++    GF 
Sbjct: 123 AIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEGFW 182

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G  +  +    +     K  LILG+EG G+    +    S+  +   G + +LNVS A
Sbjct: 183 VYGADASGEPIG-KLSFPQKTLLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVSVA 241

Query: 269 AAVALYITQNHF 280
           A + LY  +   
Sbjct: 242 AGILLYEIRRSL 253


>gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 278

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 96/246 (39%), Gaps = 15/246 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
               G + V++ALN+ S  + ++  T++A  R     +     P+  +  +  D +    
Sbjct: 32  FLAEGENAVTSALNHGS--VIEIFVTESAAQRFSSLLDATSSTPISFISDRAADHLSETV 89

Query: 109 AVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 AL  + L         A +N  L+ V     +P N G ++R + A    G++  
Sbjct: 90  TSTGLFALCNSQLSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFA 149

Query: 166 KRYSPSESAVLAKSASGALEHIPY---------IRISNLTDALQKMHSWGFQTIGLSSDS 216
            +          ++++G++ H+P          I   +         +         + +
Sbjct: 150 GQSVDPLGGKAVRASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEAST 209

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +P E+ I     A + G E  GL    Q+ A     + M G  +++N++ AA++ LY +
Sbjct: 210 SEPGEKPILAQPTAWLFGNEAHGLG-HWQDLADLRISIPMRGRAESMNLATAASICLYQS 268

Query: 277 QNHFAK 282
            N  A+
Sbjct: 269 ANALAR 274


>gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 361

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +     ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 361

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +     ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 276 TQNH 279
               
Sbjct: 355 WWRQ 358


>gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 222

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 9/203 (4%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMV 137
               +   ++  P + +D++V  E  HQG+  + A      L+               ++
Sbjct: 17  LAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLI 74

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DPHN+G+I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R++NL+ 
Sbjct: 75  LDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSR 134

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            + ++   G    G  +  K        N  I L++G+EGKG+     E    +  L M 
Sbjct: 135 TIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMV 194

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G + +LN S AA++ +Y      
Sbjct: 195 GKVTSLNASVAASLLMYEVYRKR 217


>gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 32/258 (12%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
             + GV TV   L +       L+  +       W   +P   PV  +P +   +++G  
Sbjct: 32  FIVEGVRTVERLLASKFETASILVTQEKVA---AWAGLIPPEIPVYIMPTEMASQLIGFH 88

Query: 109 AVHQGLALETAPLLSPTLDA--------------------------VRNSQLLMVLDHVN 142
            +H G+        + +L+                                LL+V  + +
Sbjct: 89  -LHVGVMACGLRRRTASLEQLLGLPEPPKDQRLATTTSIEKYHELTAFQKPLLIVCPNCD 147

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQ 200
           +P N+GAI+R A AF   G++  K      S  + + + G +    I   R  +      
Sbjct: 148 NPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIFGLTIRESRHLDHDLQRL 207

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K          + S+S   L+   +  ++AL+LG E +GL  +  +    +  + MP  +
Sbjct: 208 KTEFGFETMGAILSESAVSLKNVQRPHRLALLLGNEAEGLTTEWMDHCNHLVTIPMPPDV 267

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV+ AA + LY   N
Sbjct: 268 DSLNVAVAAGIFLYQLTN 285


>gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
 gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
          Length = 257

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 11/246 (4%)

Query: 43  TSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVP 97
             +      +YG   V  AL +       L    +       R    A        +   
Sbjct: 9   RQERRRFLTIYGRKAVLEALQDEDMDCRILHMANSNRGGGIIRDIQRAAQERGLDCREHS 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILR 152
            + + +I       QG+AL+        LD          Q ++ LD V +P N+G ++R
Sbjct: 69  REELARISRNGRQDQGVALDVYCAAMGELDAYLRDMSDAPQRILALDGVTNPQNMGMVIR 128

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A    G+I   R +P+   ++ K+++G +   P +R   + D  +++   GF    L
Sbjct: 129 SAAAAGIQGLIYADRGNPALGPLVIKASAGTVFRAPLLRCQTVMDGARQLSDAGFTLYRL 188

Query: 213 SSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +D ++   + +    +   +LG E  G+    +        + M   +++LNV+ + A+
Sbjct: 189 QADGRRSLFDGQDFAQRALFVLGGESDGISEALRGLPGENLSIPMRNGVESLNVAVSGAL 248

Query: 272 ALYITQ 277
             YI  
Sbjct: 249 VAYIAA 254


>gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 254

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 11/256 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           +  ++R YK ++  N K ++  +       G   +     N   K+   +  ++     +
Sbjct: 6   VSTDNRYYKLIKKLNDK-KYRDESGVFLAEGEKFLEE--KNNFSKV---IVKESKYMYYE 59

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              N+     +  +  +  D I  +      L + +  L + +  +      L++LD + 
Sbjct: 60  EKYNISKYENLTILSDKLFDNISTQNNSQGILFIYSKHLSNLSELSGD----LIILDAIQ 115

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIG I+R+ VA +   +I TK      S  + ++  G + ++  I            
Sbjct: 116 DPGNIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVNIIYEEKENIIKFLK 175

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            +         S       +      K A I G EG G+  +  E +   A + + G I+
Sbjct: 176 ENGYNIISTALSKESIDYREVELKKDKNAYIFGNEGGGVSDEFLEISHQKAIIPIYGKIE 235

Query: 262 ALNVSNAAAVALYITQ 277
           +LNVS A  + LY  +
Sbjct: 236 SLNVSIALGIFLYKMR 251


>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 243

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +     ++  +     + GV  V   L +    + +L  T       + + +     
Sbjct: 8   KIITSLGSKKYRQKYNLFVVEGVKNVKEVLKSNIT-VKELYTT-------NQNFDAKGNL 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  + P  + KI      ++         + P         L +VLD +NDP N+G I+
Sbjct: 60  PVHYLSPNELKKISFLSTPNE---CLAVCEIPPQRSIAPVKGLTLVLDTINDPGNLGTII 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  F    II +K      +  +  S  G+   +             ++       I 
Sbjct: 117 RLADWFGITQIICSKESVDVYNPKVIMSTMGSFARVAVHYTDI-----LEVIENYKYPIL 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAA 270
            +    + + Q    +   L++G+E  G+    ++  T+   +   G   ++LNV+ A +
Sbjct: 172 GAFMEGESIFQFPFPENAMLVMGSEAHGISKAVEDKITNKISIPAIGKQTESLNVAMATS 231

Query: 271 VALYITQNH 279
           + +    + 
Sbjct: 232 IIVGEVFSQ 240


>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 239

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 87/248 (35%), Gaps = 19/248 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++++K +     K ++  +  +  +     V  A+ + + K+  +   +          
Sbjct: 7   SNQNFKFLNKLKMK-KYRDKENSFIIESKKLVDEAIASSA-KVDFIFLKEGVSYETSHKT 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +           +++   +       G+           + + +    +++LD  NDP 
Sbjct: 65  LIFC---------ESLFTKISSMTSPDGIGAVIKKKDPVEISSSK----ILLLDGTNDPG 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA AF    +I     +   +    +    A     +                
Sbjct: 112 NLGTMIRSAEAFGFKDVILMPGTADVYN----EKTLRASMGSIFRLNILNKTYDDIKKLK 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               I  +      +    K+ KI + +G E  GL  + +E       + M G I++LN 
Sbjct: 168 SCYRILSADMDGLDIRNYKKDSKIIIAIGNEANGLSQEMREITDEFIKIPMEGEIESLNA 227

Query: 266 SNAAAVAL 273
           + AA++ +
Sbjct: 228 AIAASIIM 235


>gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 127/336 (37%), Gaps = 60/336 (17%)

Query: 1   MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLF------- 50
           M +I   + +KI +   ++   K R    + ++        R T +   E+         
Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATESTIPKIVGEG 299

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQ 99
           +YGV  V AAL+   R+ + L   +                 +    L     +      
Sbjct: 300 IYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDLS 359

Query: 100 TID-KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             D  +V     HQGL L+ +PL         P L       L + LD V DP N+GAI+
Sbjct: 360 KHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAII 419

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G+Q +G
Sbjct: 420 RSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLG 479

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLH--------------- 255
            S   +     EI       L+LG+EG GLRP  + + T +  +                
Sbjct: 480 GSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVEDV 539

Query: 256 ----MPGI-----------IKALNVSNAAAVALYIT 276
               M              +++LNVS AA V L+  
Sbjct: 540 DTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLHHL 575


>gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617]
          Length = 344

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G I+RS   
Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAH 220

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS  
Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL       K+ L+LG E  GL   T +       +   G +++LNVS A  V L   
Sbjct: 280 GVPLSTAELPAKMVLVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAEW 339

Query: 277 QNH 279
              
Sbjct: 340 WRQ 342


>gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 275

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 16/262 (6%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           ++    +++      +     +     + G   V+  L+   +  +  L  T+   A   
Sbjct: 9   DNPGSDRIRKVAGLSRRSARLRSGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRP 68

Query: 83  WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
                           + TV PQ    +       QG          P++       L +
Sbjct: 69  ELLEFAQSTVSAGGLHIHTVSPQVEKALSDA---AQGWIAVARFEAFPSVTGSPEGSLAL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           +L    DP N+G ++R A A     +   +  + + S  + +++ G++ H+P  R  +  
Sbjct: 126 ILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             +     +  +    ++               N K+A ++G E  GL    +     + 
Sbjct: 186 AVVKALRSEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LNV++AA + L+
Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267


>gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 268

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 93/263 (35%), Gaps = 10/263 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
                   +++ N+  +  S    +   G   V + L      + +L+     +     +
Sbjct: 6   PADPRLDDIRNLNKSDK--SGEGLVIAEGP-LVVSRLAESRFPMRRLVGFPKKVEAYISE 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              P   P+  V  +T+ ++ G +     +A           + +  ++ + VL+ V D 
Sbjct: 63  YGEPE-CPIYEVSRETLAEVAGFDMHRGLVAAADRAPEPEVSEILETAKTIAVLEGVGDH 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI R A     D ++     +        + + G +  +P+  +       Q+   
Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                           +           DK+A+++GAEG GL     +     A + M  
Sbjct: 182 ALADASFTLISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LNV+ AAA++ Y  Q   +
Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264


>gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 271

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 6/257 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW- 83
                 +  +   ++     +       G   V + + +       LL  +  +  L+  
Sbjct: 10  PEDPRIEPYRDVRER-DLVGRDGLFIAEGAVVVRSLVQSSRTLARSLLVAEKRVTALEPM 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            A LP   PV T     +D+I G      +       + P  +  LDA      +++L  
Sbjct: 69  LAALPPGTPVYTATQPVLDRIAGFPLHRGILAVGERISIPSAADLLDACGPVARVVMLFG 128

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +  N+G I R+A AF  D +I              + + GA   +P  R+    D L 
Sbjct: 129 IGNHDNMGGIFRNAAAFGADAVILDPGCCDPLYRKAIRVSVGATLLVPTARLDAGEDPLA 188

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +  + F+ + LS    + L       + AL+ G+EG GL P     A     + M G  
Sbjct: 189 LLDRFRFEAVALSPAGAETLAALTPPRRAALLFGSEGPGLPPALLARA-RSVRIPMAGGF 247

Query: 261 KALNVSNAAAVALYITQ 277
            +LNV+  + + L+   
Sbjct: 248 DSLNVATTSGIVLHHVA 264


>gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581]
 gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae]
          Length = 229

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 12/228 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+ G H++  A+ N     F  L  K           L      + VP   ++++    +
Sbjct: 4   FICGKHSLLEAIENNIPFKFIYLTKK-------PTEALLAKQNYQIVPMSFLNQLT--TS 54

Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   +  P+    L+         L++LDH+ DP+N+GAI+RSA A     II   +
Sbjct: 55  NHQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNK 114

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKN 226
            +   + V  K +SG    I +I +++L+ A++K+  WGF     + D     ++    N
Sbjct: 115 RASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLN 174

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A+I+G+E KG+     + A  + ++ M G +++LNVS A  + L+
Sbjct: 175 TPAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222


>gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018]
 gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018]
 gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 229

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 3/230 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   L N  + + ++  +K    +L +   L     +  +  Q   + + K  
Sbjct: 2   IIYGKQIVLYVLENHPKLVEEVFLSKEIDNKL-FSKFLKLGKKIHRLDNQK-AQALAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRY 168
            HQG  L+ +      +  ++    ++VLD V D  NIGAI R+A +   D  I +  + 
Sbjct: 60  NHQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKT 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   V   + +           S    +      +      +     K   +  K+DK
Sbjct: 120 INNSGIVRTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIEKSDK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL LG+EG+G+ PK  +       + M     +LNVS AA + +Y  + 
Sbjct: 180 VALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229


>gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 275

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 16/262 (6%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           ++    +++      +     +     + G   V+  L+   +  +  L  T+   A   
Sbjct: 9   DNPGSDRIRKVAGLSRRSARLRSGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRP 68

Query: 83  WDANLPH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
                           + TV PQ    +       QG          P++       L +
Sbjct: 69  ELLEFAQSTVSAGGLHIHTVSPQVEKALSDA---AQGWIAVARFEAFPSVTGSPEGSLAL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           +L    DP N+G ++R A A     +   +  + + S  + +++ G++ H+P  R  +  
Sbjct: 126 ILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLA 185

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             +     +  +    ++               N K+A ++G E  GL    +     + 
Sbjct: 186 AVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGLDATEESWCDVLV 245

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LNV++AA + L+
Sbjct: 246 SIPMFGRAESLNVTSAATLCLW 267


>gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 269

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    +  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMALSGDSVTLDEVSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
 gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
          Length = 296

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 92/261 (35%), Gaps = 26/261 (9%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------------- 87
              +P          +  AL+     +  L+  K+   +                     
Sbjct: 30  FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCDKLQSRDLTQESL 89

Query: 88  -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 H  PV     + + KI G +     L     P LS      +N++ + +L++V 
Sbjct: 90  VYREDEHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVV 149

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+GAI RSA A   D ++ T   +       ++ + G +  IP+             
Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209

Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    ++             E+ +  +K+A++LG EG GL   T         + 
Sbjct: 210 MDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           M   + +LNV+ A+AVA +  
Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290


>gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 432

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 8/252 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-- 89
           +++     +            G    S AL+     +  +  T   L        L    
Sbjct: 177 RLRDL-GNAAGRRARGQFLAEGSLLASRALD--DLPVEDMFYTGELLRDPAGAPLLQRAG 233

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P   +    +  I     +   +      +            +++V + +++P N+
Sbjct: 234 DLGVPAYRISDGLMGLITPTRPLPAIVTAIWGRVRDVAAYRPGKQAVILVAEQISNPENL 293

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G  LR+A A      +     +        ++A GA+  IP    ++L   + ++ + G 
Sbjct: 294 GMTLRTADAAG-AEAVVVAGGADPLHRECVRAARGAVGRIPIYSCADLPAWIGQLRTQGI 352

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + + ++ L        +A+++G E  GL   T    +S+  + M     +LNV  
Sbjct: 353 PVVGATGNVERELYDVDLPIPLAIVVGNETDGLTDATLAACSSLVRIPMAPGQDSLNVGV 412

Query: 268 AAAVALYITQNH 279
           AA V LY     
Sbjct: 413 AAGVLLYDVVRR 424


>gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 103

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +       +G + ++   L Q     ++AL++GAEG+G+R  T+E    +  + M G
Sbjct: 21  MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAG 80

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            + +LNVS A  + L+      +
Sbjct: 81  SVSSLNVSVATGICLFEAVRQRS 103


>gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 345

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 102 RRQRLEETRVYGENACQALFQSRPDCIVRAWFVQEVTPRFREALKWMAANRKAYHVVDEA 161

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G ++RS   
Sbjct: 162 ELVKASGTEHHGGVCFLIKKRVGMPVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAH 221

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +  + L      G+  +  SS  
Sbjct: 222 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSHK 280

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL Q     K  L+LG E  GL   T +       +   G +++LNVS A  + L   
Sbjct: 281 GTPLAQAELPAKTVLVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEW 340

Query: 277 QNH 279
              
Sbjct: 341 WRQ 343


>gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
 gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 5/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    ++   R          +      V  +
Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPDAIVRAWFLQDVTPRFRDALKWMAANRKAYHVVEEE 181

Query: 100 TI---DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +    +      V   +           L        ++ L+ V +PHN+GAI+RS   
Sbjct: 182 EMVKAARTDHHGGVCFLIKKRVGHDAETYLKDAPEHDCVLALEDVGNPHNVGAIMRSCAH 241

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G+I+         A +  +  GA         +      +   +        S   
Sbjct: 242 FGVKGVISPDSAVLESGAAVRTAEGGAEYIQGIDADNFAQTLDKFKKAGYTLVATSSHKG 301

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL +     K+ LILG E  GL   T        ++   G +++LNVS A+ V L   
Sbjct: 302 SVPLSKAQLPAKMVLILGQEKDGLSESTLNQGDMSIYIGGTGHVESLNVSVASGVLLAEW 361

Query: 277 QNH 279
              
Sbjct: 362 WRQ 364


>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 238

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 98/251 (39%), Gaps = 19/251 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +    QK ++  + +   + G H V+ AL     ++       ++   +   + 
Sbjct: 7   NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALKANQVELLISTKHIDSELEVLEVSE 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                         + K+   ++    +A           +  R     ++LD + DP N
Sbjct: 66  E------------VMAKLAFTKSPQSIMAKCRMQKEIQLKEGRRY----LLLDDLQDPGN 109

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A+AFS D +I +       +  L +S  GA  H+  I  +      Q      
Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIYGNLTQLISQLQEKGV 169

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                   + K   +    + K+A ++G EG G+ P+       + ++ +   I++LNV+
Sbjct: 170 VVIGSALENGKNIAQINRYS-KMAFVVGNEGNGMNPEVLAKCDDIGYIPIN-TIESLNVA 227

Query: 267 NAAAVALYITQ 277
            A ++ +Y  +
Sbjct: 228 IAGSIMMYHFK 238


>gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 262

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 11/252 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           YK+++    +S       +        V+  L +  + I  +L T+           L +
Sbjct: 16  YKELRDNAFRSDR-----SFIADSPKVVNLLLQSDIQ-IKSILVTQEYYDEFMPLVALKN 69

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +     + + KIVG +  H         +    ++       +++LD++    N+G+
Sbjct: 70  IPKIYLTTKEEMGKIVGHKIHHN---CMAHGIRPDDIELSSAGDRIIMLDNITSSENVGS 126

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIPYIRISNLTDALQKMHSWGFQ 208
           I RSA A         K      +    + + G A     ++             +    
Sbjct: 127 IARSAAALGVKSYFLPKSSPHPFNRRALRVSMGYAHMLGIHVYKDIFETIEALKAAGYRV 186

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +    PL       K  LI+G EGKG+     +    +  + M   IK+ NV  A
Sbjct: 187 YAAEVTPDSTPLSSLHVTSKWVLIMGHEGKGISQDILDVCDEVVSIEMQEGIKSFNVGVA 246

Query: 269 AAVALYITQNHF 280
           A++ +Y      
Sbjct: 247 ASIMMY-AFRQR 257


>gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
 gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA    D      
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQDLA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
 gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
          Length = 244

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            + G+H V   L     ++  +L  K     +   D         + +P   +DK++   
Sbjct: 7   VVAGLHPVKELLERTPDRVETVLLQKGGRQQKEIKDLCQATGIRFQILPRAQLDKLIS-- 64

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           A HQG+A                        LL+ LD V DP NIG + R+  +    G+
Sbjct: 65  AHHQGIAARVFSPGFVDPQVLLETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGL 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLE 221
           +  K  S        K++SGAL ++P  +++NL   L++   +         +     + 
Sbjct: 125 VLPKNRSAPLGGGALKASSGALNYLPVAQVTNLGRFLEQATQAALPVIGTGLTPDSLSVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +    L+LG E KG+RP   +   ++  + +     +LNV+ A A+ +       
Sbjct: 185 KARLSTPAVLVLGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243


>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 276

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 98/250 (39%), Gaps = 12/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-----NLPHPFPV 93
           ++    +     + G ++V AA+      + ++  T  A  +          +      V
Sbjct: 27  RAAKRKKAGRFLVEGFNSVDAAIRA--EAVVEIFVTAPAAEQFCELLTGYLESGTQRKSV 84

Query: 94  KTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             +       +          A+      +  L   ++  + S  L++    NDP N+G 
Sbjct: 85  SLIDDSAARSLSETVTTTGLFAVCDTGAVSTSLEEAIEVGKQSGCLVIPVECNDPGNVGT 144

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R   A     +I         ++   +S++G++ H P  R  ++   ++++   GF T
Sbjct: 145 IVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGSVFHTPVARERDIDVVVERVREAGFTT 204

Query: 210 IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +  + D    L  +   D  +A + G E  GL  +   +A +   + + G  ++LN++ A
Sbjct: 205 LATAMDGALTLGVDALPDGPVAWLFGNEAHGLSEEITASAGASVAIPIKGEAESLNLATA 264

Query: 269 AAVALYITQN 278
           AA+ L+ T  
Sbjct: 265 AAMCLWETVR 274


>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
          Length = 349

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 30/286 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGVHTVSAA 60
           +   +K +  +   +  +  +  +    +                    +++G H+V A 
Sbjct: 62  NILRSKAKSRNNFIQPKRKISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFAT 121

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L N  R I ++  T    +   +   L         V+ V    + ++    AVHQG+AL
Sbjct: 122 L-NTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQLTS-GAVHQGVAL 179

Query: 117 ETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + A   + +LD          N+ + + LD + DPHN+GAI+RSA AF C GII  +R S
Sbjct: 180 QLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRS 239

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +  +AK A+GALEHIP  R+ NL  A+ ++   GF  +GLS D + P+ +  +   I
Sbjct: 240 AGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPI 299

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALY 274
            +++GAE KG+   TQ+    +  + + G   +LN S AAA+   Y
Sbjct: 300 VVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCY 345


>gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 247

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 9/242 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    ++ +   +     + G   V   L N    + QL AT + + +     N     
Sbjct: 8   KLIHALEQKKQRKKNGLFLVQGEKNVGE-LFNSDFTVKQLFATSSYINKNSRALNEFGLV 66

Query: 92  PV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            +        + K     + +  LA          L  ++  +L++VLD V DP N+G I
Sbjct: 67  SLTIEATEDELKKAGTLISNNSVLA--VVECKIMPLPQIQKDELILVLDQVGDPGNLGTI 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +  +  ++ G+   +            Q+  +     +
Sbjct: 125 IRVADWYGIKHIICSPDCADFYNPKVIAASMGSFARVQVSHTDLSEYLSQQSMAIYGAFL 184

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +  K        N    +++G+E  G+ P+ ++  +    +   G  ++LNV+ A  
Sbjct: 185 EGENIHK-----ANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATG 239

Query: 271 VA 272
           + 
Sbjct: 240 II 241


>gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 271

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 5/222 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+G H V AAL NP+R   +L  T+ A+     D DA LP   PV+      + ++V K+
Sbjct: 36  LWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKD 95

Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A HQGL L+ APL    LD V +    + ++VLD V DPHN+GAILRS  AF    ++T 
Sbjct: 96  APHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQ 155

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R++P ES  LAKSASGALE +P++R+ NL+ AL++M   G+  IGL  D K      + 
Sbjct: 156 DRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALP 215

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +  +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 216 SGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257


>gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 257

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 11/236 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  + +     G       L       + L         ++         P+ ++  +  
Sbjct: 26  YREEAKLFLAEGRK----FLEYSENASYVLFRED---IPIEETILEKFNCPIISLSSKCF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +K+     V +             +   R+++ L++LD + DP N+G I+R   A     
Sbjct: 79  EKVS----VQENSQGVIILYSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II TK      +  + +S+ G++ H+    +  +              +    +   P  
Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKIEIVDYLKKQQYNIVVTSLQEDSIPYM 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   +++ A + G EG G+  +  + A     + + G  ++LNV+ A  + L+ ++
Sbjct: 195 EMSLDERNAFVFGNEGHGVSKEFLDIADEKVIIPISGQAESLNVAMALGILLFYSR 250


>gi|270296788|ref|ZP_06202987.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480146|ref|ZP_07939256.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|270272775|gb|EFA18638.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903693|gb|EFV25537.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 253

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++    +     G   V   L         LLAT   L+R      L 
Sbjct: 7   RIKYIHSLEQK-KNRKADKVFLAEGPKLVGDLL--GHFPCQFLLATSEWLSRNRP---LS 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +    +   Q LA+   P     +  +    L + LD V DP N+G
Sbjct: 61  TVTDVTEVSEEELSRASLLKTPQQVLAVFRQPDEETDISVIS-HSLCLALDDVQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          + T   + + S    
Sbjct: 120 TIVRLADWFGIEHIFCSPNTVDIYN----PKTVQATMGGIARVRLHYTPLPEFIRSLKDI 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + +       ++          ++LN
Sbjct: 176 PVYGTFLDGENMYGQPLSKNGLIVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 236 VAIATAVVCAEFRRQ 250


>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 194

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +++++V+ PHN+ AILR+  A                +       S    ++   
Sbjct: 20  QPDLTVLMENVHKPHNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLEVH 79

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +       +   +      L     +   +       A++LGAE  G+  +    A  
Sbjct: 80  PTTEAAFRHLRERGFSVYATALKEG-ARDYREVDYTRPTAIVLGAEKWGVSEEALALADG 138

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + H+ M G++++LNVS AAAV L+  Q   
Sbjct: 139 LIHIPMLGMVQSLNVSVAAAVILFEAQRQR 168


>gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
 gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
          Length = 268

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLTTLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+  ++     L K           
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          ++A+++G EG GL  KT   A  +  + M   + +LNV
Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252


>gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
 gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
          Length = 275

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 105/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H   A L+   +    +  T  AL 
Sbjct: 16  KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLAGAYLDVAGQPEMCI-VTDGALR 74

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L    L +P  D V  + L++  
Sbjct: 75  HDEAQAIVARIEDHRVVTLPDALFGQLSNVVHGVGTLLLVEKLDTPLPDTVAQTCLVL-- 132

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +     +     
Sbjct: 133 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDAEAQAL 192

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++      T    +++    +    +  +A + G EG G+    ++  +    +  PG
Sbjct: 193 IERLAVPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDKVSLRVTIPQPG 249

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 250 GMESLNVAAAAAVCVFEQCRQ 270


>gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 193

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 85/183 (46%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            Q       K +               ++ A + + L++VLD + DPHN+GA LR+A A 
Sbjct: 3   RQENQARANKHSNPTASIRIYEEDDLASVLADKPNPLVLVLDCIQDPHNLGACLRTADAA 62

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
            CD ++  K  +   S  + + A G  E++P  R++NL  A+ K+   G   +G   + K
Sbjct: 63  GCDLVVMPKDKTAPISDTVIRVACGGAENVPIARVTNLARAMDKLKDLGVWFVGTEDEGK 122

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        I +++GAEG+G+R  T E    +  + M G +  LNVS A  V L+   
Sbjct: 123 QSIYDVDLKGPIGIVMGAEGEGMRRLTGERCDFLVKIPMTGQVPCLNVSVATGVCLFEVV 182

Query: 278 NHF 280
              
Sbjct: 183 RQR 185


>gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630]
 gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile]
          Length = 226

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 90/214 (42%), Gaps = 2/214 (0%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           I +    K    +L  D +      +     +   ++V  E     + + +      +  
Sbjct: 15  INEEFENKKEHVKLLEDLDK-KNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSES 73

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++   
Sbjct: 74  INKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIF-D 132

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I  ++  + +  + S  F  +    +++   ++     K+AL++G E  G+  +    
Sbjct: 133 MNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSK 192

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +  + + G  ++LN + ++A+ +Y  + +  
Sbjct: 193 SDILVKIPIYGKAESLNAAISSAILMYEIKKYLI 226


>gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 267

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 5/252 (1%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
                   ++   K ++S  +K +H  +       G+  ++ A  +       ++A+K  
Sbjct: 2   PRREITSYSNPTIKALRSLREK-KHRQRERRFLAEGLRLLTDARESGRVPEVLVMASKRD 60

Query: 78  LARLDWDAN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
              L              V    P  + KI GK+              S        + +
Sbjct: 61  PHPLIDALEHAVEAAGGDVIETTPDILSKITGKDNPQAVAGAFAEWDTSLDRIDRNAAPI 120

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +V   + DP N+G +LR+A A    G+I     +        +++ GA+      R   
Sbjct: 121 WLVAQALRDPGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASMGAIFTQNLARARW 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L  +     Q +  S     P           +++G E +GL    +        +
Sbjct: 181 E-EFLPWLRQGPGQLVAASLREAVPYRGAPYASPCFVMVGNESQGLPEAYETACDLRVTM 239

Query: 255 HMPGIIKALNVS 266
            M G   +LN +
Sbjct: 240 PMRGRADSLNAA 251


>gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G I+RS   
Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAH 220

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS  
Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVRAISGESFAAGLDAFRQAGYTIVTTSSHQ 279

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL       K+ L+LG E  GL   T         +   G +++LNVS A  V L   
Sbjct: 280 GVPLSTAELPAKMVLVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAEW 339

Query: 277 QNH 279
              
Sbjct: 340 WRQ 342


>gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
           mitochondrial-like [Pongo abelii]
          Length = 353

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 28/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100
                L+G+     AL    R + +LL                        PV     Q 
Sbjct: 47  SRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +   + VHQG+ +E +PL                  QL +VLD + DPHN GA+LRS
Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
                              + + +    L+LG EG GL  + Q +   +  +     +P 
Sbjct: 226 GCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LNVS AA + L+   +   
Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308


>gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 252

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  AL+   P  KI+     ++ + +   +       PV  + P++ + +    
Sbjct: 11  IEGRNAVLEALSASMPLNKIYIKKGERHGVMQKIRELARSSGIPVVELDPKSFEHMARTR 70

Query: 109 AVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                +         +   +  T +  R +  + VL+ + DP N+G+ILR+A      G+
Sbjct: 71  NPQGVIALSSPKEYVSVDDILETAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +  + K + GA  ++   R++N+  +  +        +  +    +P  +
Sbjct: 131 IIPKRRACGVTPAVVKVSEGAAGYVNVARVTNI-ASTLECLKEKGLWVVGADMDGEPYHR 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +AL++G E KGL    +E    +  L M G + +LN + AAAV  Y      
Sbjct: 190 VDLTGPVALVIGGEDKGLGRLVREKCDLLVKLPMRGHVPSLNAAVAAAVLGYEILRQR 247


>gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210]
 gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905
 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           bovis AF2122/97]
 gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 288

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++              + +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           S4-171]
          Length = 190

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 83/158 (52%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               +A       ++LD + DPHN+G+I+R+A +    GII  KR +   +  +AK+++G
Sbjct: 28  FNAAEAKGEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTG 87

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A+E++P +R++N+   ++++   G    G  +           +  +A+++G+EG G+  
Sbjct: 88  AMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSR 147

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +E    + HL M G + +LN S AA++ LY      
Sbjct: 148 LVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 185


>gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 217

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 11/223 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL +     + +              ++P          + I K +      Q +   
Sbjct: 1   MEALKSDFEIEYIV-------MGEGVKIDIPKGDFEIAHTTERIFKKISDTVTPQMVMAI 53

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                      ++   + ++ D++ DP N+G I+R+A AF    I T        +  + 
Sbjct: 54  IKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVL 113

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++ G++ HIP I  ++      K          L +           +DK+A +LG E 
Sbjct: 114 RASMGSIFHIPVIATTSQILLKLKRRGIKVFATHLKAQKLVHECNI--SDKVAFVLGNEA 171

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 172 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 212


>gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
 gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
          Length = 244

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVHHIFATAEFLAEHAQALA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
 gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
          Length = 225

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G +++  A+ N    I ++      L ++  + NL + + V  V    +DK+     
Sbjct: 4   YICGKNSLLDAIKNN-VPIKKIY-----LTKIVPNLNL-NTYQVHIVEKSFLDKLAKGI- 55

Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E   +    ++     N + ++VLDH+ D HN+GAI+RSA A     II  K 
Sbjct: 56  NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
                +  + + +SG    I +I +++L    +K+    F     S S + KPL+Q + N
Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIVFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 357

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 78/246 (31%), Gaps = 9/246 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 110 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFRDALRWMAANRKAYHVVDDA 169

Query: 100 TIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G +  H G+                   A      ++ L++V +PHN+G I+R+
Sbjct: 170 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIMRT 228

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GII  +  +    A +  +  GA                    +        S
Sbjct: 229 CAHFGIRGIIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSATLDTFRRAGYTIVTTSS 288

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L + +   KI L++G EG GL   T +       +   G +++LNVS A  + L
Sbjct: 289 HKGTTQLHRAVLPAKIVLVVGHEGDGLSDGTLQQGDLSISIGGTGSVESLNVSVATGIML 348

Query: 274 YITQNH 279
                 
Sbjct: 349 AEWWRQ 354


>gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
 gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
          Length = 272

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 90/243 (37%), Positives = 135/243 (55%), Gaps = 21/243 (8%)

Query: 40  SRHTSQPE--------NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           SRH               +  G H V AAL NP R + ++  T+ AL +LD    LP   
Sbjct: 22  SRHRRPSGGNQRGQTVRFW--GRHAVLAALANPDRAVRRIWGTREALGQLD----LPPVI 75

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
           P+       + ++V ++A HQGL +E  PL    L           + + L++LD V DP
Sbjct: 76  PISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPLVILDQVTDP 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HNIGA+LRSA AF    I+T  R+SP ES V+A+SASGALE +P++R+ NL+ AL+++  
Sbjct: 136 HNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNLSRALEEIAE 195

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +  IGL  D++  L + +   K+AL+LG+EG G+R    E    +A L +   +++LN
Sbjct: 196 AQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLPISPRMESLN 255

Query: 265 VSN 267
           +SN
Sbjct: 256 ISN 258


>gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 147

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 66/145 (45%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD V D  N GAI R+    + D +I   R S S +A   K+++GAL  +P  R  NL 
Sbjct: 1   MLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLR 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             LQ +   GF+ +  +        +      + +I+GAE  G+  +          + M
Sbjct: 61  STLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPM 120

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
            G I++LNVS AA + +Y       
Sbjct: 121 LGTIESLNVSVAAGILIYEAVKQRN 145


>gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 317

 Score =   99 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 33/281 (11%)

Query: 31  KKMQSFNQKSRHT-----SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----- 80
           ++     ++             +  L+GV   S AL+   R +F+L   ++   +     
Sbjct: 32  REASKGRRRPEGRALPIERTRGSEILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTS 91

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----------V 129
                      PV  V  + +D + G   VHQG+ LE  PL    L+             
Sbjct: 92  EFVLQAAARGVPVLHVGRRELDTLCG-GRVHQGVCLEATPLRFKRLEEAEEPGLGDGESP 150

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L + L+ + DP N+GA+LRSA     D ++T++R S   +  ++K++SGA+E    
Sbjct: 151 NRQLLWLALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDV 210

Query: 190 IRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               +L   L+   + G+       Q+  + +       +   N  I L++G+EG GL  
Sbjct: 211 YSTDDLRSFLKAKAAEGWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSL 270

Query: 243 KTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279
           +TQ     M  +     +   I++LNVS A  + L+   + 
Sbjct: 271 ETQLLCHQMLVIPSGRALHPGIESLNVSVATGILLHSICSQ 311


>gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G +++  A+ N    I ++      L ++  + NL + + V  V    +DK+     
Sbjct: 4   YICGKNSLLDAIKNN-VPIKKIY-----LTKIVPNLNL-NTYQVHIVEKSFLDKLAKGI- 55

Query: 110 VHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E   +    ++     N + ++VLDH+ D HN+GAI+RSA A     II  K 
Sbjct: 56  NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
                +  + + +SG    I +I +++L    +K+    F     + S + KPL+Q + N
Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIVFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 288

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 18/272 (6%)

Query: 18  SHYAKLRR--NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
             + K +R  +    K + +   K +           G   V   L++   +   ++AT+
Sbjct: 21  PQHIKTKRMISKAKLKYINALQTK-KGRLAHGTFVAEGPKVVHDLLSS--FQPELIVATE 77

Query: 76  NALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             L R + +            +  V P  + KI      H    L               
Sbjct: 78  QWLERHEDEILKGNQGDRRPQIIAVSPDELQKIS--LLQHPQEVLAVFEQRHMPAHIDPT 135

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L++ LD + DP N+G I+R A  F    +I ++  +   +  + ++  G++ H+    
Sbjct: 136 HELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMGSIAHVDVTY 195

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++          S       L  +               +I+G EG G+    +      
Sbjct: 196 LNLCDFVDALPASTPVYGTLLDGEDIYQQ---TLTATGIIIMGNEGNGISKDLRARINHA 252

Query: 252 AHLH----MPGIIKALNVSNAAAVALYITQNH 279
             +     +P   ++LNV+ A A+A    +  
Sbjct: 253 LLIPNFSTLPNKAESLNVAIATAIACSEFKRR 284


>gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A]
 gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A]
          Length = 268

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 85/233 (36%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTETQLRQRMEPGKGVFIAESPNVISRALDAAYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+  ++     L K           
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNCRAVRVSMGSVFLVPWTWLNGTIGDLNKFGFRTAAMALT 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          ++A+++G EG GL  KT   A  +  + M   + +LNV
Sbjct: 200 DDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNV 252


>gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
          Length = 277

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    S  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 242

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 89/253 (35%), Gaps = 21/253 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++  Q +  F  G   +   L +    +  L  TK   + +       
Sbjct: 6   QIKLITSLVQK-KYRKQYQLFFAEGAKVIQELLQSNFE-LEHLYCTKPMFSDVSELKK-- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +    + KI      +       A    P    + NS L++ LD + DP N+G
Sbjct: 62  -----TIISDSDLKKITALTTAND----CLAVFKIPQEKQIENSGLIVALDDIRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    I+ +++     +  + ++  G++  +    +       +   +    
Sbjct: 113 TIIRLCDWFGIAQIVCSEQTVDVYNPKVVQATMGSITRVNITYLDL-----ETYLAEAKT 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
            +  +    K + +        ++LG E  G+    +E  T    +   G     ++LNV
Sbjct: 168 AVFGTFMDGKDIYKTQLPPSGIIVLGNEANGISKIIEEKVTQKITIPRFGDLQRTESLNV 227

Query: 266 SNAAAVALYITQN 278
           + A A+ L   + 
Sbjct: 228 ATATAIVLSEFKR 240


>gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1]
 gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1]
 gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 290

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 90/269 (33%), Gaps = 22/269 (8%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++   +  + +   +     + G  +V   L      +  L             
Sbjct: 10  NPKAERIRRVAELAERKGRKRAGRFLVEGPQSVRELLTWHPDIVRDLYVEAIGTEPDAPF 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133
                       +     V  V    +  +    + V     ++     +  +++  ++ 
Sbjct: 70  LTDTVAQMAGKAMQAGAYVHKVTHAVMRHMSSDAQGVLAVADMQGFLDAAGNVESFGDNA 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP---YI 190
           ++     V DP N G ++RSA A  C  ++         +  + +S +G+L H+P     
Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLPVLTMG 189

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGLRPKT 244
             +      ++  +     +  +         ++  +   L      I G E +GL  + 
Sbjct: 190 TEAFFAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGAKTMIFGNEARGLTREV 249

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +    +  + + G  ++LN+  +AAV L
Sbjct: 250 LDRTDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1]
 gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii
           RW1]
          Length = 247

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G H V AAL NP R + +L  T+ A++ L+    LP   PV       + ++V  +A H
Sbjct: 18  WGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTYADAADLGRLVPHDAPH 73

Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QGL +E  PL    L         + + L+VLD V DPHN+GA+LRSA AF   GI+T  
Sbjct: 74  QGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAVLRSAAAFDAVGIVTQD 133

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES  LA+SASGALE +P++R+ NL  AL ++   GF  IGLS  ++  L Q + +
Sbjct: 134 RHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRIGLSGHARGTLAQVMGD 193

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +IA++LGAEG+G+R  T+     +A L +   +++LN+SN
Sbjct: 194 SRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234


>gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 383

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V   
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEED 198

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTAGEQDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   +    L +  + G+  +  SS 
Sbjct: 258 HFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 276 TQNH 279
               
Sbjct: 377 WWRQ 380


>gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
 gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
          Length = 264

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++   Q      +   ++L G H   AAL    R    +     +      
Sbjct: 12  SRDNPLLKELRKLAQDPGAYRRLGRVWLEGDHLCRAALARGIRPAVAVF--SESFWPSAP 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +  + G E+      +   P     L    +    +VLD + D
Sbjct: 70  AEWASSAIKTVVVDDDLLRAVSGLESPAPMGFVLDLPARPELLPDAPS----VVLDRLQD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G+ILRSA AF    +I  K  +   +  + ++  GA                  + 
Sbjct: 126 AGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGMGAHF----GLRLIEGVEADALD 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     L +       A +LG EG+G+    +  A+    +  PG  ++L
Sbjct: 182 ELKVPLVATSSHRGDWLHEARLPHPCAWLLGHEGQGVSAALEARASHHIRIAQPGGEESL 241

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 242 NVAAAAAICLHA 253


>gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
 gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
          Length = 244

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV---- 110
           +++  ++ N      +L  +K    +      +   +  + +    + KI+G        
Sbjct: 7   NSIIESIKNNKG--LELYISK-ISPKSINIEKIAREYNTQIIKVNDLAKIIGNNNHRGFA 63

Query: 111 --------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                   +     +            +N+  +++LD + DP N GAILR++  F+ D +
Sbjct: 64  LKLKISKSNNTNKQDKNLEEFLEKFQYKNNVFILILDGIEDPQNFGAILRTSEQFNIDLV 123

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           IT++R S  ++A   +++SGA +++  + + N+ + ++ +   GF         K     
Sbjct: 124 ITSQRRSAKDNATTLRTSSGASQYVNKLIVPNINNVIKDLKKNGFWIYASDIKGKAINTI 183

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +I + KIALI+G EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 184 KINDTKIALIMGNEGKGIHKLIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
          Length = 308

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 30/278 (10%)

Query: 32  KMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDA 85
            + S  +K     +      LYG+H +S AL    R I  +   ++ L      +   + 
Sbjct: 26  DLMSLEKKQSPGREEFYFDILYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILER 85

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----------QL 134
                     +P   ID IV K   HQGL  +T  L        ++             +
Sbjct: 86  CWEENIKTLPIPSSKIDTIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPV 145

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------VLAKSASGALE 185
            ++L+ + DP N G+ILRSA    CD I  T   S S +          +        + 
Sbjct: 146 WLLLNEIQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMN 205

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              + ++   +                ++    P+     ++   +ILG EG+GL  +  
Sbjct: 206 TTEFCQLLKESKWDVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELV 265

Query: 246 ETATSMAHL----HMPGIIKALNVSNAAAVALYITQNH 279
           +  T   ++    ++   + ++NVS AAAV L+   N+
Sbjct: 266 DLCTHQIYVESRSNLNKNVDSMNVSAAAAVILHSVLNN 303


>gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 265

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 5/249 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPH 89
           +    Q+ +   +       G  TV   L +       L+     ++             
Sbjct: 6   LARDLQRRKGRERQHRFVAEGTRTVEGLLASGLPVTGVLVSASGLEDGRTAALVAQARDR 65

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V  V    +      E+   G+              +     ++VLD + DP N+G 
Sbjct: 66  GVQVLEVGDAELMGAADTESPQ-GILAVAPIPDHRLPTPMPPCARILVLDALQDPGNVGT 124

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHSWGFQ 208
           ++R+A A      I         +A + + + GAL H P          A   + ++   
Sbjct: 125 VIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAMSWEDCAAQLGLAAFVIM 184

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                  +   L      D++AL+   EG GL        T    + M   +++LNV  A
Sbjct: 185 AADTDGVNIADLRPGQVPDRVALVASNEGAGLSAHLASAVTQRVAIAMEPTVESLNVGVA 244

Query: 269 AAVALYITQ 277
             + L+  +
Sbjct: 245 TGILLHALR 253


>gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 66

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + Q      +AL+LGAEG G+R  T +T   +  + M G +++LNVS A+ + LY     
Sbjct: 1   MYQADLKGPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQ 60

Query: 280 FA 281
             
Sbjct: 61  RT 62


>gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 288

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 93/278 (33%), Gaps = 13/278 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I      ++   +D +    R +                      +   GV      + +
Sbjct: 20  IVDPSDPRVDDFRDLNSVDRRPDVPAL---------PGGRVGKGLVIAEGVLVAQRMIAS 70

Query: 64  PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                         +  LD D   P     P      + + +++G       LA    P+
Sbjct: 71  RFAP-HAFFGVDRRMGELDADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPV 129

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
               +D + +++ + VL+ VND  NIG+I R+A     D ++     +        + + 
Sbjct: 130 ERTVVDVIEHARTVAVLEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSM 189

Query: 182 GALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G    +P+ +  +          S          +   PL   +   K+A ++GAEG GL
Sbjct: 190 GHALLVPFAKSQDWPGDLDVLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGL 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              T       A + M     +LNV+ AAAVA Y    
Sbjct: 250 AEHTMRRCDVRARIPMSRGTDSLNVATAAAVAFYERAR 287


>gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
 gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
          Length = 221

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 1/162 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L   R + L +V+D+VN PHN+ AI+RS  A     +    R S         +
Sbjct: 7   FQKIHQLLERRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAISRRSSI-RTKQHTA 65

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A  +      +  S +    +   +     +                   A+++G E  G
Sbjct: 66  AGASRWVKVGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGEELTG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +    A    ++ M G++++LNVS AAA+ L+  Q    
Sbjct: 126 PSEEAMNLADHFVYIPMFGMVESLNVSVAAALILFEAQRQRK 167


>gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 262

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 11/250 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85
            + ++++S  +K +H        + G   V+  L                      DA  
Sbjct: 5   AEIQRLRSLREK-KHRETLGLFVIEGEKVVAELLAVGFPFEEIFATHAWNRPGPAEDATP 63

Query: 86  --NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    +  +    + +I          A+          DA+    L + LD V D
Sbjct: 64  SPLRDARPRIVRLDAADMARISHFPTPSSVFAVGRLQRQPLPPDALN-HGLTLALDGVQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G +LR A  F+ D ++ +   +      +  ++ G+   +    +   T       
Sbjct: 123 AGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARVQVHSVELPTALAGVRV 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +   +    P   +       +++G+EG+GL P   E  +    +   G  ++L
Sbjct: 183 PVLGCDLTGENVHALPPLAD-----AVIVIGSEGRGLSPAVAELVSRRVTIPRYGQAESL 237

Query: 264 NVSNAAAVAL 273
           N + AAA+  
Sbjct: 238 NAAIAAAIVC 247


>gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
          Length = 277

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++  N +    ++       G   +  A          LLA +      D    L
Sbjct: 16  ADYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  +T+ + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-ETLAEQVTGFQVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    +    S  +   +      K+AL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 236

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
             G   V+ A+      + ++ AT+ AL+R              V  V    +  +    
Sbjct: 2   AEGPQAVAEAVRAGG--VTEVFATEAALSRHTGLLAEAESFGARVFAVADSGLAALTDTV 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                     A             +L +VLD + DP N G ILR+A A     ++     
Sbjct: 60  HPQG----IVAVCGYVDTTLPETVRLAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGS 115

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---- 224
               +    +++ G+L H+P +R  +  + L  + + G + +      +  L+  I    
Sbjct: 116 VDPYNGKCVRASVGSLFHLPVVRGGDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGL 175

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                A + G+E  GL     E A     + + G  ++LN++ AAAV LY +  
Sbjct: 176 LRQPTAWLFGSEAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLYASAR 229


>gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1]
 gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1]
          Length = 265

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 6/234 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + + G   +  A  +    + +L       +    +   P       +     +K+ G
Sbjct: 33  GVMLIEGARELMRA-ESAGVTVPELFVCPELFSPEAREL-FPEVTGATELSRAAFEKVSG 90

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E       L  APL +P L    +  +++VL  +  P N+GAILR+A A    G++   
Sbjct: 91  RENP--DGVLGVAPLPAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAGVLVLG 148

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +      + +++ GA+       +     AL  +    F+T+  + D+          
Sbjct: 149 RGADPYGPNVIRASQGAVF-SVPTAVLGEDAALGWLAEHNFRTVACTPDAPADYWDTPLT 207

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++AL+LG E  GL  + +  A     + M G   +LNV+ AAA+ LY      
Sbjct: 208 GRVALLLGTEHAGLPAEWRA-AHQAVRVPMHGQADSLNVATAAALVLYEALRQR 260


>gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 28/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP 88
           Y  +     ++R               +  AL      +  L+        +  +D    
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPLSLLVEEPWLEGMKDTFDFIDG 76

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L      LL    +  R+++ + V++++ D  
Sbjct: 77  RWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   +   +
Sbjct: 137 NVGALMRSAAALDVDAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKHY 196

Query: 206 GFQT------------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                         L+     P E     DK+A+I G EG GL 
Sbjct: 197 WPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLAMIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 257 HHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 270

 Score = 99.5 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   + +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  N+G
Sbjct: 75  VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +P+ R +   D L  +   GFQ
Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDKGFQ 194

Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D            +  +K+A ++GAEG GL  +    +     + M     +LN
Sbjct: 195 LLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERVR 268


>gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
 gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
          Length = 259

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 26/280 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K+                  +  YK ++     ++ T       L G H V   
Sbjct: 1   MEIITSKE------------------NLYYKNLKKALSNNKCT----QTVLEGPHLVKQW 38

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L++   + F        L     +    +      V    + K + +   +QG+ L    
Sbjct: 39  LDSG--RAFNKFVMSETLYNKGGNDFEGYTISNPIVLSDNLFKSLSEVVTNQGILLLIDI 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                ++ +     +++LD + DP N+G +LR+ VA     +   K  S + S+ + +SA
Sbjct: 97  PTY-NINNLSMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSA 155

Query: 181 SGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            G+   +      +L   ++                S K L +   N KIA I G EG G
Sbjct: 156 QGSHAFLKIYHHVDLIGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGNG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +          + +   I++LNV  AA++ LY     
Sbjct: 216 VSSEILSLGLEKCIIPINQNIESLNVGVAASICLYEQYRQ 255


>gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 345

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++       +    ++ L+++ +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTSVKQWVGNAQAQDCVLALENIANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ + L      G+  +  S D
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVNVLDDFRQAGYTVVTTSGD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL      +K+ L+LG E  GL    ++       +   G +++LNVS    + L  
Sbjct: 279 RGKPLFATALPEKMVLVLGQEADGLPDAARDPDDLCVKIDGTGNVESLNVSVVTGILLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
 gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 257

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           + +I+  K+E+I                            ++    +   + G   +  A
Sbjct: 2   LKIITSNKNEEIIH------------------FYRLIHDKKYREANKLFIIEGFKLLDEA 43

Query: 61  LNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L N    +  ++     N      +   L     +  V    I K+         LA+  
Sbjct: 44  LQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYKVSGNIIKKLSVNIEPSPILAVVK 103

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  ++       +++LD++ DP N+G ILR+  AF+   +I            +  
Sbjct: 104 IKQEMCDINDN-----ILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKA 158

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S     +        +       + +  +    +   +   L +     K  L++G EG 
Sbjct: 159 SMGAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGH 218

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL     + A     + M    ++LNV+ AAA+ LY    
Sbjct: 219 GLVQTFIDHAHIKTMIKMN-QTESLNVAVAAAIFLYELNK 257


>gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 124

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +       +G + ++   L Q     ++AL++GAEG+G+R  T+E    +  + M G
Sbjct: 42  MRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAG 101

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            + +LNVS A  + L+       
Sbjct: 102 SVSSLNVSVATGICLFEAVRQRT 124


>gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 75

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 7   YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 66

Query: 281 A 281
           +
Sbjct: 67  S 67


>gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 129

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 61  YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 120

Query: 281 A 281
           +
Sbjct: 121 S 121


>gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 138

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 70  YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 129

Query: 281 A 281
           +
Sbjct: 130 S 130


>gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 224

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V+D+VN  HN+ AI+RS  A     I              A  A        
Sbjct: 4   HRQPDLSLVMDNVNKAHNLSAIIRSCDAVGIHEIHAVSYRKNIFDRQTAA-AGTTRWVEV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S  +                 S               ALILGAE  G+  +  E A
Sbjct: 63  TLHQSITSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGAEWDGVSTEALEAA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G+I++LNVS AAAV L+  +    
Sbjct: 123 DHHISIPMHGMIESLNVSVAAAVILFEAERQRT 155


>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 313

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++    +++AK     R +   +   ++         +  + G +    AL  
Sbjct: 7   TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 64

Query: 64  PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                 QL        +   R            +       +D+I      HQG+ ++  
Sbjct: 65  G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQ 122

Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 123 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 182

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K
Sbjct: 183 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 242

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   
Sbjct: 243 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 302

Query: 278 NHF 280
           N  
Sbjct: 303 NAR 305


>gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
 gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
          Length = 331

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++    +++AK     R +   +   ++         +  + G +    AL  
Sbjct: 25  TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 82

Query: 64  PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                 QL        +   R            +       +D+I      HQG+ ++  
Sbjct: 83  G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQ 140

Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 141 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K
Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 260

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   
Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320

Query: 278 NHF 280
           N  
Sbjct: 321 NAR 323


>gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 345

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E +     ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPSDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
 gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
          Length = 258

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 13/249 (5%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPF 91
             +KS +      + +YG   V   L + S +IF+L    +                   
Sbjct: 10  LARKSAYDR---LITVYGRKPVYEILADRSLEIFRLHLADSNRGGGIVEQIKSLAAQRNI 66

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPH 145
            +     + + +I       QG+A +                   + + L+ LD + +P 
Sbjct: 67  EICYHSREQLARISRNSKQDQGVACDIHSAGYQPYKKALEKLPSADQRPLIALDGITNPQ 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RS  A    G++   +     SA++ K+++G +     +R  +L  AL      
Sbjct: 127 NLGMIIRSITASPAYGLLLPSKGCADISALVIKASAGTVFKGNILRCESLAKALPAFIEK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF+   LSS    PL +      I  +LG E +G+  +    +     + M   +++LNV
Sbjct: 187 GFEVCTLSSHQATPLAEFKPQAPIIYVLGNETEGVSKEIAALSKHRVGIPMANGVESLNV 246

Query: 266 SNAAAVALY 274
           +  AA+  +
Sbjct: 247 AITAALIAF 255


>gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 252

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  F+ G H   A+L +     K+F     K+                ++ V    +D 
Sbjct: 8   QQPDFVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAKKQGLVIQRVTKSKLDT 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+ L  A      LD              +++LD + DPHN+G+ILR+A A
Sbjct: 68  LSNGQ-NHQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGSILRTADA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   ++ +AK+++GA+E +P +++SNL +A++++   G    G     
Sbjct: 127 AGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWIFGTDMKG 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 + K   + LI+G EGKG+   T++    M  + M G I++LN S AA + +Y  
Sbjct: 187 TDYRRWDAK-GAVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQG 245

Query: 277 QNHF 280
            N  
Sbjct: 246 YNSR 249


>gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 257

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 21  KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 76  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPYYLAKANLPVYGAFL 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 192 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 247 IILDNIRRQ 255


>gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
 gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
          Length = 262

 Score = 99.1 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPEMCI-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  D V  + +++  
Sbjct: 61  HDEAQAIVSRIDEQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPDTVAQTCIVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++      T    +++    +    + ++A + G EG G+    ++  T    +  PG
Sbjct: 179 IERLAVPVVITDSHGAEAIYDCD---LSAELAWVFGNEGAGVSQAWRDAVTLRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256


>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 332

 Score = 99.1 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++    +++AK     R +   +   ++         +  + G +    AL  
Sbjct: 25  TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGSDSDELVIGRNAALEALRV 82

Query: 64  PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                 QL        +   R            +       +D+I      HQG+ L+  
Sbjct: 83  G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 140

Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 141 PYQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K
Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQSLRERGWYAIGLDGGGDK 260

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   
Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320

Query: 278 NHF 280
           N  
Sbjct: 321 NAR 323


>gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 290

 Score = 99.1 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 87/269 (32%), Gaps = 22/269 (8%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++  ++    +   +     + G  +V   L      +  L     +       
Sbjct: 10  NPKSERVRRVSELADRKGRKRSGRFMVEGPQSVRELLTWHPGLVEDLYVEVESAQPDASF 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           A           +     V  V    + ++    + V     ++     S   D      
Sbjct: 70  ATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADAQGVLAVADMQAFLDSSAAPDDFDEHA 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH------- 186
           ++     V DP N G ++RSA A  C  ++         +  + +S  G+L H       
Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVGSLFHLPILTMG 189

Query: 187 --IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +        A+     +G  +    S +      E      A++ G E +GL  + 
Sbjct: 190 TDDFFAWCDTHELAVYAADVYGTDSRQPESLTDVIAAPETLAGAKAVLFGNEARGLTKEV 249

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E    +  + + G  ++LN+  ++AV L
Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSAVML 278


>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 265

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 10/247 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             K ++    + +            + L+G H V AAL NP+R+  +L AT+  +  LD 
Sbjct: 6   RKKALRGRAGRMKGGRGSGKGTAGHVRLWGRHPVEAALKNPARQHRKLWATREGIDSLDG 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDH 140
           +  LP  F V+      + ++V K+A HQGL LE  PL    LD       ++ ++VLD 
Sbjct: 66  E--LPPDFAVEYAEVTDLARLVAKDAPHQGLVLECEPLEDVFLDDVANGDPARPVVVLDQ 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAILRSA AF    I+T  R++P E  VLAKSASGALE +P++R+ NL  AL 
Sbjct: 124 VTDPHNVGAILRSAAAFGAACIVTQDRHAPPEGGVLAKSASGALETVPWVRVVNLARALD 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G+  IGL+ +++  L   +    +AL+LGAEG+G+R    +   ++A L +   I
Sbjct: 184 ELADLGYWRIGLAGEAEATLSGSLTTGALALVLGAEGEGMRHNIAQHCDTLAKLPITSAI 243

Query: 261 KALNVSN 267
           ++LNVSN
Sbjct: 244 ESLNVSN 250


>gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
 gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
          Length = 244

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 14/251 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNHFA 281
           + L   +    
Sbjct: 234 IILDNIRRQHN 244


>gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 215

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V+D+VN  HN+ AI+RS        +     Y  S       +A  +     
Sbjct: 16  HRQPDLTVVMDNVNKAHNLSAIIRSCDTVGIGELHAVS-YRKSIYTEQDAAAGASKWTTL 74

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++     T   +         +  SS               AL++GAE  G+       A
Sbjct: 75  HLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGAEWDGISEAALHGA 134

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS A A+ L+  Q   +
Sbjct: 135 DQTIAIPMFGMVESLNVSVATALILFEAQRQRS 167


>gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 242

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           + ++     + G  ++   L     K   + AT      L          P+  V P+ +
Sbjct: 18  YRNELGLFVVEGKKSIIEFLKAGY-KAKAIYATNAFSPHLV-------GHPLILVSPEEL 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   +   +G     A         +    L++ LD+V DP N+G ++R    F  + 
Sbjct: 70  QRLSTLKHPDEG----VAIFQQHERKEILQEGLILALDNVQDPGNLGTLIRLCDWFGIET 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +++     +  + +++ G+L  +    +       +   +     + +++   + L 
Sbjct: 126 LLCSEQTVDCYNPKVVQASMGSLSRVEVHYLPL-----EGFLATCALPVYVANLEGENLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVAL 273
                +   ++LG E  G+ P+    A     +   G     ++LNV+ A  + +
Sbjct: 181 TTTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKLQQAESLNVAMAGGIII 235


>gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 296

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 26/261 (9%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------------- 87
              +P          +  AL+     +  L+  K+   +                     
Sbjct: 30  FEPKPGIFIAESPKVIERALDAGCVPMSFLMEKKHVETQAKEILARCDKLQSRDLTQESL 89

Query: 88  -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                 H  PV     + + KI G +     L     P LS      +N++ + +L++V 
Sbjct: 90  VYREDEHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVV 149

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+GAI RSA A   D ++ T+  +       ++ + G +  IP+             
Sbjct: 150 NPTNVGAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGA 209

Query: 203 HSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    ++             E+ +  +K+A++LG EG GL   T         + 
Sbjct: 210 MDVLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIP 269

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           M   + +LNV+ A+AVA +  
Sbjct: 270 MTHGVDSLNVAAASAVAFWQL 290


>gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
 gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
          Length = 261

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 107/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  D V  + L++  
Sbjct: 61  HDEAQAIVSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLDTPLPDEVAQTCLVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++ +    T    +++    +    +  +A + G EG G+    ++  +    +  PG
Sbjct: 179 IERLAAPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256


>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 235

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 106/274 (38%), Gaps = 43/274 (15%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ K+       + K R +HR                      +   H +  A
Sbjct: 2   MESITSLQNRKVKIWTSLQHKKGRDSHR-------------------LFLVETEHLIEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                         + A       ++      V     + +   + +  +H+    +   
Sbjct: 43  --------------QKAQILQTIISDQKGDILVTEAILKKLK--ISQSTIHRIGLCQMPH 86

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +        +++LD + DP N+G I+R+A +F  + +  ++    + +    +++
Sbjct: 87  FEKKEVKK------VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQAS 140

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA+     +   +L + +  +   G + +G S     PL++  K D IA++LG EG+G+
Sbjct: 141 QGAIF-SIPVFREDLKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAILLGNEGQGV 199

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    E    +  + M G  ++LNV+ A A+ +Y
Sbjct: 200 KGNLLELCDEITRIEMSG-FESLNVAVAGAILMY 232


>gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
 gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
          Length = 262

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPELCV-VTDGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  + V  + L++  
Sbjct: 61  HEEAQAIVSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPPPERVEQNCLVL-- 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +S  GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIEHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDA--- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +           S   + +     +  +A + G EG G+    ++  +    +  PG
Sbjct: 176 SALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNEGAGVSQVWRDAVSLRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 236 GMESLNVAAAAAVCVFEQCRQ 256


>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 325

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 105/301 (34%), Gaps = 42/301 (13%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I      ++   ++ +++  R +    K                 +   G+  V   + 
Sbjct: 18  YIEDPSDPRLDDFRNLNHSDKRPDMPGGK---------------GLVIAEGLLVVPRLIR 62

Query: 63  NPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +    +  ++ T+  L  L  DA+L         PV  V  + + +IVG + +H+GL   
Sbjct: 63  S-RFPVRAIMGTEAKLHSLLDDADLAATLAQANIPVWCVSREVMAEIVGFD-MHRGLLAS 120

Query: 118 TAPLLSPTL--------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
              +  P++              D    S  + VL+ V D  NIGA+ R+A     D + 
Sbjct: 121 ANRVDVPSISDVLDELDARRDRPDQPPVSGTIAVLEGVGDHENIGALFRNAAGLGVDAVF 180

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +      + + + G +  +P+          Q+  S   Q            +  
Sbjct: 181 FGAGCADPLYRRVVRVSMGHVLRVPFAYFDGNRSTWQRGLSELQQRGYRCVALTPSDDAV 240

Query: 224 IKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +         + ALI+GAEG GL       +   A + M     +LNV+ AAA+  Y   
Sbjct: 241 MLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTDSLNVATAAAMGFYERA 300

Query: 278 N 278
            
Sbjct: 301 R 301


>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 27/255 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             ++   K+++   +K R   +       G   ++AA     R + +             
Sbjct: 6   SPHNERLKELRRLARK-RGRDESGRFVAEGEDLLAAADEAGWRPVERYC----------- 53

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   V    +  +        G       +            L + L  + D
Sbjct: 54  --AAGSGLPGTEVEADVLAHVS-----QLGSGTRALAVYEQRWADAPAGPLCVYLHGIAD 106

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA+AF    +      +        +++ GA+          L  A   + 
Sbjct: 107 PGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVF------QVPLARASGDVA 160

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +    TI L + +          +   L++GAE  GL     E     A + +    ++L
Sbjct: 161 ALPGTTIALDAHAGSGPLHGPLGEPATLLIGAERAGLPEALLEACDRTARIPIRS--ESL 218

Query: 264 NVSNAAAVALYITQN 278
           N + AA +ALY    
Sbjct: 219 NAAMAATIALYEATR 233


>gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 326

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 24/297 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----PENLFLYGVHTVSAA 60
           + K  ++++    +H  KL       ++     + +R   +    P +  + G + V  A
Sbjct: 33  TPKAEDRVYHP--AHKRKLAAE-AARREQARLEKANRLRPELSLAPGHELIAGRNAVLEA 89

Query: 61  LNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           + +    + ++  +     +               P+       +D++    AVHQG+A+
Sbjct: 90  VRSGI-PLSRVFVSGGVASDERLGEVVRTATALGAPLFEASRTELDRMTD-GAVHQGVAI 147

Query: 117 ETAPLLSPTLD----------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           E  P     ++                L++ LD V DPHN+GA++RSA AF  DG++  +
Sbjct: 148 EVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFGADGVVVPE 207

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   +A + K ++GA   +P  R+ NL  AL K+ + G+  +GL       +E     
Sbjct: 208 RRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDTAIEDISFA 267

Query: 227 D-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           D  I L+ G+EGKGL   T+ET  ++A + +   +++LNV+ A  +ALY      A+
Sbjct: 268 DAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRAR 324


>gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv0881/MT0904
 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
          Length = 288

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++              + +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 271

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 9/263 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78
              +   K ++   +  R      +  + G   +  AL    R   +L   +      A 
Sbjct: 10  SPANPRIKALRELRR-RRAREATGSTLVEGYEELQIALAGGVRP-RELYLCEELMADPAA 67

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV 137
            +   +        + T+     +K   +E        + T  +    L       L +V
Sbjct: 68  QQDVVELASQRGAGIVTLSRAVFEKAAYREGPDGFLAVVPTPGVALADLPQPDGPGLYVV 127

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            +H+  P N+GAILR+A A   D +I                 S        +  +   +
Sbjct: 128 AEHLEKPGNLGAILRTADAAGVDAVIA-ADPVTDWGNPNVVRGSKGTVFSVPVATAPTPE 186

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +   G   +  +  ++    Q      +A+ +GAE  GL     E AT    + M 
Sbjct: 187 VLDFLAGRGMTLVATTPHTEVLHTQVDLTGPVAIAVGAEKTGLTASALEGATHRVRIPMV 246

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G   +LNV+ +AA+ +Y      
Sbjct: 247 GRANSLNVATSAAIVVYEAVRQR 269


>gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 330

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDAN 86
             K+++    + R         + G + V+ A       I ++    +  +  RL     
Sbjct: 65  RTKQLEKI--RRRFDVPEGYEIVCGRNAVAEAARAG-VPISRVFMAVSAESDDRLGAVVR 121

Query: 87  LPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMV 137
                  PV       ++ +    AVHQG+A+E       +         AV ++ LL+ 
Sbjct: 122 RATLIGCPVLETTKLDLEALTD-GAVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GA+LRS  AF  DG+I  +R S   +A + K ++GA   +P  R +NL  
Sbjct: 181 LDQVTDPHNLGAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVARETNLVR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256
            L+ +   G   +GL    +  +E     D  + L+ GAEG GL    +ET   +A + +
Sbjct: 241 TLETLKKEGCFVVGLDGGGETLMEDLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPI 300

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              +++LN + A  ++LY      
Sbjct: 301 SQTVESLNAAVATGISLYEVDRLR 324


>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 243

 Score = 99.1 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 18/253 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K ++  +     + G      A+ +       ++             
Sbjct: 6   SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREGENFIDE---- 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        +T + +       +G+    + +    + + +    ++ L+++NDP 
Sbjct: 61  -------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEQKDVKSDQ----ILFLENINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + I+ +       ++   +SA G+L  +     +       K + +
Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISYENINVLEKYKSNGF 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L  +S+  LE + K +K  LI+G E  G+  + ++ A     + M  + ++LN 
Sbjct: 169 KIYETSLEKNSRSILEIKNK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNA 227

Query: 266 SNAAAVALYITQN 278
           S AA+++++    
Sbjct: 228 SIAASLSMFYLSK 240


>gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
 gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
          Length = 367

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 123 RRQRQEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVEDD 182

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L++V +PHN+G I+RS  
Sbjct: 183 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQTAPAKDCVLALENVGNPHNLGGIMRSCA 241

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +  +  +  +  ES    ++A G  EH+  I   N  + L+     G+  +  SS 
Sbjct: 242 HFGIN-GMMVQDPAQLESGAAVRTAEGGAEHVKAISADNFLEVLETFRKAGYTIVTTSSH 300

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K+ L+LG E  GL     +       +   G +++LNVS A+ + L  
Sbjct: 301 KGTALGKAQLPAKMVLVLGEESDGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAE 360

Query: 276 TQNH 279
               
Sbjct: 361 WWRQ 364


>gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
 gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
          Length = 231

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 10/230 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V  A  N +  I ++        +   +A     FPV+ +  + +++   +   HQ
Sbjct: 8   GKNSVVDAY-NNNWPIEKVFLLHEQNKKFFKNA----KFPVEVIRKEKMEEWTNE--NHQ 60

Query: 113 GLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           G       +    L+   +   +L++VLDH+ DPHN+GAI+RSA A     II  +  S 
Sbjct: 61  GFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIILPRDRSA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             ++ + K +SG    I +IR+++++  +    ++  +          +   Q   ++++
Sbjct: 121 EINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQVSYSEQV 180

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ALI+G EG G+   T   A    ++   G +++LNVS A  + L+    +
Sbjct: 181 ALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFEIIKN 230


>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 344

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 42/293 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86
             + +     ++   ++     + G   V  AL    +K  +  +  T+ A  R +  A 
Sbjct: 49  RVRDIAKLRTRA-ARTKKGQFLVEGPQAVREALKAHLQKPILDAVYVTEAAFDRHEDIAE 107

Query: 87  LP------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---N 131
           L                 ++ V  + ++ +    +    +A+      S +L       N
Sbjct: 108 LLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGDGALN 167

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L+ VL  V DP N G ILR A A   D +ITTK      +    +S +G+L H+P I+
Sbjct: 168 PKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 227

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-----------------------QEIKNDK 228
              L D  + + S G   +         L+                           +  
Sbjct: 228 GVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKP 287

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
              + G E +GL  + +  AT    + + G  ++LNV  AAAV LY       
Sbjct: 288 TMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQR 340


>gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
 gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
          Length = 159

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 76/156 (48%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            LDA     LLMVLD++ DP N+G ILR+  A    G+I +       +  + +S  G++
Sbjct: 3   DLDAQGRKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSV 62

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P++ + +L + L+ +   G  +       K   +QE      A ++G EG GLR + 
Sbjct: 63  YRMPFVYVEHLPETLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGLRDEV 122

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + M G +++LN + A++V ++      
Sbjct: 123 ADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158


>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 242

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 94/254 (37%), Gaps = 21/254 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S +QK +     +  F  GV  +   L +    +  L  T N    +       
Sbjct: 6   QIKLISSLHQK-KQRFANQLFFAEGVKVIQELLQSNFE-LEHLYTTLNDFEEVQSSKRTL 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +  Q + KI      +  LA+   P+ +  +++     L++ LD + DP N+G
Sbjct: 64  -------INEQELKKISALTTPNSCLAVFKMPVENQIINSG----LILALDDIRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    I+ +K      +  + ++  G++  +    +       +   S    
Sbjct: 113 TIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYVDL-----KAFLSQTKL 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
            +  +      + Q        +I+G E  G+  + ++  T+   +   G     ++LNV
Sbjct: 168 PVFGTFMDGDTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNV 227

Query: 266 SNAAAVALYITQNH 279
           + A A+ L   + +
Sbjct: 228 ATATAIILSEFKRN 241


>gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 290

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 20/260 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPF---PVK 94
              P          +  AL    R    L+  K     L         N        P+ 
Sbjct: 31  EPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAINQTRGLEQTPIY 90

Query: 95  TVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148
            V  + + ++ G    + +G       +  P+L+        +   + +L+ V +P NIG
Sbjct: 91  VVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLNNFLATMPSDHPRIAILESVVNPTNIG 150

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKM 202
           AI RSA A   DG+I T   +       ++ A G +  +P+  +              + 
Sbjct: 151 AIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRA 210

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      +       Q  K D++A+ILG+EG GLR  T   +     + M   + +
Sbjct: 211 GYKTAAMALRHNTVDIDDPQLAKVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDS 270

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A+A+A +   N   K
Sbjct: 271 LNVAAASALAFWELGNRKVK 290


>gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 250

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 17/259 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K ++S   K ++  Q       G   V   L    ++   ++AT         + + 
Sbjct: 5   AKIKFIKSLQLK-KNREQTHLFLAEGYKLVGELLA--KQRAHTIVATHEW----IENQSC 57

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  + + K+   +   Q L     P      D +  S L ++LD V DP N+
Sbjct: 58  VQANEVIEVTQEELKKVSLLQHPQQVLG--VFPFFQTGNDTIDISALTLMLDGVQDPGNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F  + I  +   +   +  + ++  G++  +    +S +            
Sbjct: 116 GTIIRIADWFGINDIFCSHETADLYNPKVVQATMGSITRVRLHYVSLV---SVLKQLPED 172

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKAL 263
             I  +      +  E  +    +I+G EG G+  + ++  +    +          ++L
Sbjct: 173 YPIYGTLLEGNNIYDEQLSTNGLIIMGNEGNGISTEIRQLVSHPLRIPNYPPDAATAESL 232

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ A A+     +   +K
Sbjct: 233 NVAIATAITCAEFRR-LSK 250


>gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
 gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
          Length = 128

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+   
Sbjct: 62  HDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 121

Query: 278 NHF 280
              
Sbjct: 122 RQR 124


>gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
          Length = 257

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 21  KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 76  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 192 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 247 IILDNIRRQ 255


>gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
 gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
          Length = 244

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 257

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 21  KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 76  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 192 EGVSVHQ-----TAFQAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 247 IILDNIRRQ 255


>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 333

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 42/293 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDAN 86
             + +     ++   ++     + G   V  AL    +K  +  +  T+ A  R +  A 
Sbjct: 38  RVRDIAKLRTRA-ARTKKGQFLVEGPQAVREALKAHLKKPILDAVYVTEAAFDRHEDIAE 96

Query: 87  LP------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---N 131
           L                 ++ V  + ++ +    +    +A+      S +L       N
Sbjct: 97  LLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADSVSPQGIIAVSFMVDASFSLLWGEGALN 156

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L+ VL  V DP N G ILR A A   D +ITTK      +    +S +G+L H+P I+
Sbjct: 157 PKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 216

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-----------------------QEIKNDK 228
              L D  + + S G   +         L+                           +  
Sbjct: 217 GVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKP 276

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
              + G E +GL  + +  AT    + + G  ++LNV  AAAV LY       
Sbjct: 277 TMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQR 329


>gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 306

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 25/280 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +++  K+  + +++  H AK RR  +      +                      + A  
Sbjct: 42  MLTSTKNPLVKAIRKLHTAKGRREEQLLLLEGTHLL-------------------AEACA 82

Query: 63  NPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                +  L  T +        W    PH   V+ V    +  +       Q   +    
Sbjct: 83  VNY-PLVTLCCTPDWQQSHPQLWQDATPHCQRVELVSASVLKAMA---TTVQPDGVVVTA 138

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S          L +VL+ + DP N+G I+R+A A   DG+  +      E+  + +++
Sbjct: 139 KSSFLAPPQIPCSLGLVLETLQDPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRAS 198

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P    +NL+  +++  + G Q +     +     +        ++LG E  GL
Sbjct: 199 AGQWFRLPISANANLSQVVRQSQAQGVQVVATLPKAPLSYWEIDWRIPTLILLGNEAAGL 258

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    A     + +   +++LNV+ AAA+ +Y      
Sbjct: 259 SSELTVLADQAVQIPLGQDVESLNVAIAAALIVYEALRQR 298


>gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
 gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
          Length = 244

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +         + K     + +       A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 63  YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   Q         +
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TTFSAQGILLMGSESHGVREQASKLVTDKITIPTFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 190

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 57/151 (37%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++V+DPHNI A+LRS  A     +                SAS        
Sbjct: 8   RQPDLTVVIENVHDPHNISAVLRSCDAVGLLTVHLVYTIEEWPELSRVSSASAVKWLDIV 67

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    S + + L        +AL+ G E +G+  +    A 
Sbjct: 68  RHESIEACYQALRAQGFTIYATHLSAASRDLYDLDLTGPVALVFGNEHRGVSDEAVANAD 127

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LN+S A AV+LY      
Sbjct: 128 GSVVIPMMGMVQSLNISVACAVSLYEALRQR 158


>gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 270

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   + +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  N+G
Sbjct: 75  VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +P+ R +   D L  +   GFQ
Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDKGFQ 194

Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D            +  +++A ++GAEG GL  +    +     + M     +LN
Sbjct: 195 LLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERVR 268


>gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400]
 gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400]
          Length = 275

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 106/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 16  KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 74

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  D V  + L++  
Sbjct: 75  HDEAQAIVSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLATPLPDEVAQTCLVL-- 132

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 133 DGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQAL 192

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++      T    +++    +    +  +A + G EG G+    ++  +    +  PG
Sbjct: 193 IERLAVPIVITDSHGAEAIYDCD---LSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPG 249

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 250 GMESLNVAAAAAVCVFEQCRQ 270


>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 276

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 17/263 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K + S   K ++          G   V   L      +  L AT+    +    ++ 
Sbjct: 11  AKIKYIHSLELK-KNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSS 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDH 140
              + V     + I  +   + V     +       P++     +        L++ LD 
Sbjct: 68  TEKYEVTEEELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASAAWDSSLILALDG 127

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F    I+ ++  + + +    ++  G++     +          
Sbjct: 128 VQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTDLSAYLES 187

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259
             +        L                  +I+G EGKG+  +          +      
Sbjct: 188 LPNETPVYGTMLDGTDIYEQS---LTHHGVIIMGNEGKGISKEITRHINHRLFIPGYPKD 244

Query: 260 ---IKALNVSNAAAVALYITQNH 279
               ++LNV+ A A+     +  
Sbjct: 245 RPSAESLNVAIATAITCAEFRRR 267


>gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 288

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 97/269 (36%), Gaps = 20/269 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---- 85
           Y ++           QP          +  AL    R    LL  +  LAR   D     
Sbjct: 18  YVRLNEAQLFHARGPQPGLFIAESPKVIERALRAGYRPA-SLLMEEKVLARDLADLDHEM 76

Query: 86  -----NLPHPFPVKTVPPQTIDKIVGKE----AVHQGLALETAPLLSPTLDAVRNSQLLM 136
                      P+  V  Q I ++ G      A+     +    L             + 
Sbjct: 77  AANQTAGLGQTPIYVVNNQLISQLAGYNLLRGALAAMYRVPRPDLNHFLATLPAAHPRIA 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + +P N+GAI RSA A   DGII T   +       ++ A G +  +P+  I   T
Sbjct: 137 VLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVPWTYIDAHT 196

Query: 197 DAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                     ++           +  +    Q  + DK+A+ILG+EG GL  +T   +  
Sbjct: 197 WQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVDKLAIILGSEGPGLAEQTIAQSDF 256

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   + +LNV+ A+A+A +   N 
Sbjct: 257 TIKIPMAAGVDSLNVAAASALAFWELGNR 285


>gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 257

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 21  KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 76  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 192 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 247 IILDNIRRQ 255


>gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
 gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
          Length = 257

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 16/261 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K + S  QK +H  +       G   V   L   +  +        A  +   + N+
Sbjct: 5   AKIKYIHSLEQK-KHRKEEGVFVAEGPKIVGDLLKLLNPTLIV------ATQKWLLENNV 57

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPH 145
            H   V     + + K+   +   Q LA+           L ++   +L + LD V DP 
Sbjct: 58  SHNCEVIEATAEELRKVSFLQHPQQVLAVFPQFKNETDKNLVSLPTQKLTLALDDVQDPG 117

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + I+ +   +   +  + ++  G++  +            Q   S 
Sbjct: 118 NLGTIIRIADWFGIENIVCSMDTADIYNPKVIQATMGSIARVKITYTDLKQYLKQIDKST 177

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261
                 L   +    E    +    +I+G EGKG+ P      T    +           
Sbjct: 178 PIYGTLLDGKNIYQQE---LSSHGLIIMGNEGKGISPDIAAMVTHKLLIPNYPEGKDTAD 234

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNV+ A A+     + +  +
Sbjct: 235 SLNVAIATAITCSEFRRYGNR 255


>gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 309

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85
             +++       +H  +     + G   V  AL    + I  +    +        A   
Sbjct: 32  RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 90

Query: 86  -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                   +     V  +  +   ++         +A   +               L   
Sbjct: 91  LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 150

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      
Sbjct: 151 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 210

Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                          +G +     S       +E+     A++ G E +GL  +  +   
Sbjct: 211 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 270

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + + G  ++LN+  +AAV L
Sbjct: 271 MSVSIPIYGKAESLNLGTSAAVML 294


>gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 292

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85
             +++       +H  +     + G   V  AL    + I  +    +        A   
Sbjct: 15  RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 73

Query: 86  -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                   +     V  +  +   ++         +A   +               L   
Sbjct: 74  LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 133

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      
Sbjct: 134 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 193

Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                          +G +     S       +E+     A++ G E +GL  +  +   
Sbjct: 194 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 253

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + + G  ++LN+  +AAV L
Sbjct: 254 MSVSIPIYGKAESLNLGTSAAVML 277


>gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 301

 Score = 98.8 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--- 85
             +++       +H  +     + G   V  AL    + I  +    +        A   
Sbjct: 24  RIRRISEL-TNRKHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTA 82

Query: 86  -------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                   +     V  +  +   ++         +A   +               L   
Sbjct: 83  LGKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVADLNSCRDLLGRVPQTPHPFLAAF 142

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      
Sbjct: 143 WQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFF 202

Query: 199 LQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                          +G +     S       +E+     A++ G E +GL  +  +   
Sbjct: 203 DLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECA 262

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + + G  ++LN+  +AAV L
Sbjct: 263 MSVSIPIYGKAESLNLGTSAAVML 286


>gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 271

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 94/259 (36%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81
            R++  Y+K++     S  + + E   L G+H   A L +    +  + +  +       
Sbjct: 6   SRDNPQYRKLRQLASNSAASRKGEYAILDGIHLCQAYLGHVGIPVLCVASQTSQHHPEVS 65

Query: 82  -DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                          +       I     V  G+ +                Q  ++LD 
Sbjct: 66  AIVQECKSGGAKCLLLTDSLYRPISQ---VENGVDIVFVISKPAVQTCPVLRQTAVLLDR 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A     +  +   + + S  + ++  GA   +  +    L D ++
Sbjct: 123 IQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAGMGAHFLLEIVENVVLEDVME 182

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                   T   +  +    +       +A +LG EGKG+R    + A+    +   G +
Sbjct: 183 ASEIPVIATTPYTETTIYDCD---LRLPVAWLLGHEGKGIRESLLDKASDRVVVPHQGAM 239

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+  AAV  +     
Sbjct: 240 ESLNVAACAAVCFFEQVRQ 258


>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
           carolinensis]
          Length = 382

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 100/284 (35%), Gaps = 24/284 (8%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--R 80
           LR +    KK               +  L+G+   S AL    R   +L           
Sbjct: 97  LRNDDFPRKKRVRAQVVLPVERSDGSEMLFGIAPCSLALATSKRSFSRLFLKAGVTPTTE 156

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEA-----------VHQGLALETAPLLSPTLDAV 129
                      PV+TVP + +D++                   G     A  L       
Sbjct: 157 AFSRQAEDRKIPVQTVPRKVLDRLSHGGVHQGVCLEATPLHPTGWTQAPAHRLEGATTEE 216

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L + L+ + DP N+GA+LRSA     DGI+ +++ S   + V++K++SGA+E +  
Sbjct: 217 APQLLWLALEGIQDPMNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDV 276

Query: 190 IRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               +L   L+     G+                              L+LG EG GL P
Sbjct: 277 FSADDLPGFLKVKSKEGWEVLGTVAHAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSP 336

Query: 243 KTQETATSMAHL-HMP---GIIKALNVSNAAAVALYITQNHFAK 282
           +T+     M  +         I++LNVS AA + L+       K
Sbjct: 337 ETKSLCRRMLTIAPGRELEPGIESLNVSVAAGILLHSICAQKVK 380


>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
 gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
          Length = 252

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 80/257 (31%), Gaps = 14/257 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V+  L         L+AT   L          
Sbjct: 6   RIKYIRSLEMK-KYRKAEKAFLAEGNKLVNDLL--GHFSCKLLIATAQWLETHPLLLAQE 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + +        Q +            D++    L + LD V DP N+G
Sbjct: 63  T----IEVSAEELAR-ASLLKTPQEVLAVFDLPSYTYDDSLPGHSLCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  ++  + + +    ++  GAL  +             +       
Sbjct: 118 TIIRIADWFGIEDIFCSQGTADAFNPKTVQATMGALARVRLHYCDLKEFIRVQTERNVPV 177

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
                       ++        +++G EG G+  + +   +    +          ++LN
Sbjct: 178 FGTFLDGKNIYSQKLSAQG--VIVMGNEGNGVCKEIENLVSQKLLIPNYPQGKETSESLN 235

Query: 265 VSNAAAVALYITQNHFA 281
           V+ A A+     +   +
Sbjct: 236 VAVATAIVCAEFRRRLS 252


>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
 gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
          Length = 244

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT+     L  + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATQEF---LAQNQSELSG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDDLTKASTLVSNNA----AIAVVEIPSVETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++   +   Q         +
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQSNLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFAAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNLRRQ 242


>gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
          Length = 257

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 21  KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 75

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 76  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 132 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 192 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 246

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 247 IILDNIRRQ 255


>gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 266

 Score = 98.8 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 11/256 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++   T     +   GV  V   L +         A      +LD  A   
Sbjct: 17  DFRDLSTADKRPDTTR--GVVLAEGVPVVERMLASRFAP----HAIMGTAPKLDRLAGQA 70

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V    + ++VG       LA    P        +  +++++VL+ VND  N+G
Sbjct: 71  PAVPRYAVTADLMAEVVGFHLNRGVLAAAERPAPLDPARLLDEARIVVVLEGVNDHENLG 130

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPYIRISNLTDALQKMH 203
           +I R+  A   D ++   R S        + + G        H+P         AL    
Sbjct: 131 SIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMGHVLLVPFAHLPAAGWPGDGLALLAER 190

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +    +  S +S        + +++AL++GAEG GL  +    A   A + M     +L
Sbjct: 191 GFRTVALTPSGESTVAQALAGRPERVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSL 250

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A AVALY   + 
Sbjct: 251 NVATATAVALYECMSQ 266


>gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
 gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
          Length = 292

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 26/273 (9%)

Query: 26  NHR---DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--------- 73
           ++      +++     +++   +     + G  +V  A+      +  L           
Sbjct: 9   DNPKSDRVRRITDLA-RAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVAQALDHP 67

Query: 74  -TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAV 129
              ++      +A+      V       I +I         +    A         LD  
Sbjct: 68  RIVSSTLERIVEASQDATIYVHQCTGDVIRRISADAQGILAVGNAQAMQSDVDDLALDTA 127

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--- 186
             +  +     V DP N G ++R+A A  CD +I         +  + +S +G+L H   
Sbjct: 128 DYAPRIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPV 187

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGL 240
                                  +  +   K      +  DK A+      + G E +GL
Sbjct: 188 FTMRTNEFFDWTSDHHVDVWAADVYGTEKRKPESLPAVLADKAAVSMSQAVLFGNEARGL 247

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            P+  E    +  + + G  ++LN+  +AAV L
Sbjct: 248 EPEILERCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 238

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 2/230 (0%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAV 110
           YG H++ + +NN    I +L    +   +       L   F +K      + K   +  V
Sbjct: 9   YGFHSIESIINNNPHTIKKLFIPSSRDDKRIHQLISLAEKFEIKYEISNKLKKD-PEAIV 67

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                     L     D+   +  +++LD++ DP N+G+ +RSA  +  D +I  K +  
Sbjct: 68  ANSETGSLKDLKVFIEDSSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIINKHHCA 127

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             + V    ++G  E I    +SNL + L+ +        GLS  ++K        +  A
Sbjct: 128 PLNEVAHNVSAGGAELINIFYVSNLINCLKYLRKSNIDIYGLSEHAQKIYTSCDFTNSSA 187

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ILG+E  G+R KT E+   +  L++    K+ NVS A  + L       
Sbjct: 188 IILGSEESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIILSEISRQR 237


>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 263

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 9/247 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH 89
           ++    QK +H          G+ TVS  L +      +  L+  + A  +LD       
Sbjct: 16  RLARLGQK-KHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAG 74

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                   P    ++    +   G+        S           ++ LD V DP N+G 
Sbjct: 75  KA--WLAGPNEFKRLAQTTSPQ-GVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGT 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A  F  + +I  +  +   +A   +S++G++  +      +L   L+++ + GF  
Sbjct: 132 IIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTPDLAKTLRRLQADGFTV 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVS 266
              + D +          +  L++G E  G+  +    A     +   G    +++LN S
Sbjct: 192 AASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAGARPAVESLNAS 251

Query: 267 NAAAVAL 273
            +A + +
Sbjct: 252 VSAGILM 258


>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 270

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 17/263 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              K + S   K ++          G   V   L      +  L AT+    +    ++ 
Sbjct: 5   AKIKYIHSLELK-KNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSS 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDH 140
              + V     + I  +   + V     +       P++     +        L++ LD 
Sbjct: 62  TEKYEVTEEELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASDAWDSSLILALDG 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F    I+ ++  + + +    ++  G++     +          
Sbjct: 122 VQDPGNLGTIIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVYTDLSAYLES 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259
             +        L                  +I+G EGKG+  +          +      
Sbjct: 182 LPNETPVYGTMLDGTDIYEQS---LTHHGVIIMGNEGKGISKEITRYINHRLFIPGYPKD 238

Query: 260 ---IKALNVSNAAAVALYITQNH 279
               ++LNV+ A A+     +  
Sbjct: 239 RPSAESLNVAIATAITCAEFRRR 261


>gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 259

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 94/254 (37%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++  +Q +    +   ++L G H   AAL    + +  +     +      
Sbjct: 14  SRDNALIKDLRRLSQDNTAYRKQGRVWLEGDHLCRAALARGLKPVMAVF--SESFWPFAH 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       +    + +I G E+  +   +   P   P    V +    ++LD V D
Sbjct: 72  AEWAQAAIKNIVISDALLPEISGLESPARMGFVLELPTAPPLQANVAS----VILDRVQD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    II  K  +   S  + ++  GA   +  +   +         
Sbjct: 128 AGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHFALRLVEGVDPEALAALTV 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                +    S   +           A  +G EG+G+       A+    +  PG  ++L
Sbjct: 188 PIVVTSSHHGSFLHQQPI----PMPCAWAMGHEGQGVSDDLMARASLKVRIDQPGGEESL 243

Query: 264 NVSNAAAVALYITQ 277
           NV+ AAA+ LY + 
Sbjct: 244 NVAAAAAICLYASA 257


>gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 324

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 40/304 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I      ++ SL D   A        Y ++     ++R               +  A
Sbjct: 23  MQII------RVDSLDDGRLA-------LYTQLTEIQLRNRLEPDKGIFIAESPKVIDRA 69

Query: 61  LNNPSRKIFQLL--ATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L      +  L+  A  + +       +       PV     + + ++ G       L+ 
Sbjct: 70  LAAGVEPVSFLVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSA 129

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               +L    +  + ++ + VL+++ D  N+GAI+RSA A   D ++ T   +       
Sbjct: 130 MHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRA 189

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------------ 218
           A+ + G +  +P+ RI                     +                      
Sbjct: 190 ARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYD 249

Query: 219 -----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   ++ + DK+ALI G EG GL  KT  +      + M   + +LNV+ ++AVA 
Sbjct: 250 PDAAADATRDQRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAF 309

Query: 274 YITQ 277
           Y T 
Sbjct: 310 YATM 313


>gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 302

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 40/304 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I      ++ SL D   A        Y ++     ++R               +  A
Sbjct: 1   MQII------RVDSLDDGRLA-------LYTQLTEIQLRNRLEPDKGIFIAESPKVIDRA 47

Query: 61  LNNPSRKIFQLL--ATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L      +  L+  A  + +       +       PV     + + ++ G       L+ 
Sbjct: 48  LAAGVEPVSFLVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSA 107

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               +L    +  + ++ + VL+++ D  N+GAI+RSA A   D ++ T   +       
Sbjct: 108 MHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRA 167

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------------ 218
           A+ + G +  +P+ RI                     +                      
Sbjct: 168 ARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYD 227

Query: 219 -----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   ++ + DK+ALI G EG GL  KT  +      + M   + +LNV+ ++AVA 
Sbjct: 228 PDAAADATRDQRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAF 287

Query: 274 YITQ 277
           Y T 
Sbjct: 288 YATM 291


>gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 275

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLAGL 79

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + +  +VG       LA  +          +  ++ + VL+ VND  N+G
Sbjct: 80  -DAPFYRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGARTVAVLEGVNDHENLG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     DG+I     +        + + G    +P+ + +N    L+ +   GF+
Sbjct: 139 SVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAANWPGDLELLRDQGFR 198

Query: 209 TIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D       +  +     ++A+++GAEG GL+  T   +     + M     +LN
Sbjct: 199 LLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSRGTDSLN 258

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 259 VATAAALAFYERDR 272


>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
 gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
          Length = 244

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 92/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N    + Q+ AT   LA+   + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSELTVKQIFATGEFLAQHAQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNNA----AIAVVEIPSVEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++       Q         +
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPAYLEQANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHR-----TEFSAQGILLMGSESHGVREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNLRRQ 242


>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
           troglodytes]
          Length = 353

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 28/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100
                L+G+     AL    R + +LL                        PV     Q 
Sbjct: 47  SRLELLFGMSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +   + VHQG+ +E +PL                  QL +VLD + DP N GA+LRS
Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
                              + +      L+LG EG GL  + Q +   +  +     +P 
Sbjct: 226 GCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LNVS AA + L+   +   
Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308


>gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 244

 Score = 98.4 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 5/241 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M   N+   + ++ + + +YG   V   L     KI  +   K                P
Sbjct: 1   MSKINKYKNNENRIKLMVVYGKRIVELILAQHQEKIINIYLAKEVDKTFFNRLKKTQK-P 59

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  +  +    +  K   HQG  LE   L       +++   ++VL  ++D  N+G++ R
Sbjct: 60  ILRLDAKKAQAMA-KGGNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA     DGI+    ++  +  VL  S+      +                      + L
Sbjct: 119 SAYGLGVDGIVICGIHNFKQEGVLRASSGA---MLGMPFCVVYNPLDVFHELKQADFVLL 175

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +          K AL+LG EG+GL  K          + M     +LNV  A A+ 
Sbjct: 176 GTSLQGQNLPISLESKKALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 235

Query: 273 L 273
           +
Sbjct: 236 I 236


>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 243

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 18/253 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K ++  +     + G      A+ +       ++             
Sbjct: 6   SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNINIKQVIIREGENFLDE---- 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        +T + +       +G+    + +    + + +    ++ L+++NDP 
Sbjct: 61  -------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEKKDVKSDQ----ILFLENINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + I+ +       ++   +SA G+L  +     +       K + +
Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISYENINVLEKYKSNGF 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L  +S+  LE + K +K  LI+G E  G+  + ++ A     + M  + ++LN 
Sbjct: 169 KIYETSLEKNSRSILEIKNK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNLTESLNA 227

Query: 266 SNAAAVALYITQN 278
           S AA+++++    
Sbjct: 228 SIAASLSMFYLSK 240


>gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
 gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
          Length = 216

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A R   L +++D+VN PHN+ AI+RS  A   + +         ++   A   S    
Sbjct: 13  LLAYRQPDLTVLMDNVNKPHNLSAIIRSCDAVGIETVHAVSEEKIIKNRQRAARGSSKWV 72

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           ++          A  +             +              A+++GAE  G    T 
Sbjct: 73  NLELHETIEHAFACLRAQGMQVLVAHHHEE-SVDFRTLDYTLPTAIVMGAELFGPSATTL 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A    H+ M G++++LNVS AAAV L+  Q    +
Sbjct: 132 SGADHCIHIPMQGMVESLNVSVAAAVILFEAQRQRTE 168


>gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 250

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 16/243 (6%)

Query: 45  QPENLF-----LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKT 95
           + +  F     LYG +     L + + +I +L  +K+       +  L         +K 
Sbjct: 9   EKKRFFDSVITLYGRNVAVEVLRDDAVQIHKLHLSKSNRIDETIEEILALAEMRGIEIKY 68

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAIL 151
              +++ +I    A  QG+A++       +   +     +S  L+ LD +N+P N+G I+
Sbjct: 69  HTKESLSRISKNSAQDQGVAIDVVSQNYRSASNIATDLPSSFRLLALDGINNPQNLGMIV 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   DGI+  +R S   S ++ K+++G    +  I I    D  + +       I 
Sbjct: 129 RSAAASKIDGIVLPRRNSTKLSPLVMKASAG---TLFKIPIYYCEDLSEILGIKDTAIIT 185

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LSS +K  +       +   +LG E +G+       +T    + M   +++LNV+  A +
Sbjct: 186 LSSHAKDDIHTLKIPSRAIFVLGNETEGVSDAVMRASTHSVSIPMYRGVESLNVAVTAGI 245

Query: 272 ALY 274
             +
Sbjct: 246 VSF 248


>gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703]
 gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 349

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A  N+    I +    +    R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFNSRPDAIVRAWFLQEVTPRFREALRWMAANRKAYHVVDND 164

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + +  G      V   +       +   L        ++ L+ V +PHN+G I+RS   
Sbjct: 165 ELTRASGTEHHGGVCFLIKKRRGLDVQTYLPHAPEKDCVLALEDVGNPHNLGGIVRSCAH 224

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  +G++  +  S  ES    ++A G  EH+  I+  NL DAL +    G+  +  SS  
Sbjct: 225 FGVNGVLV-RDASQLESGAAVRTAEGGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSHK 283

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L       +  ++LG E  GL     +       ++  G +++LN+S A  + L   
Sbjct: 284 GTALYDTQLPARTVIVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILLAEW 343

Query: 277 QNH 279
             H
Sbjct: 344 WRH 346


>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 287

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 24/291 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN +     E I S + S     RR             K     +       G      A
Sbjct: 1   MNRMPTP--ELI-SPRSSRVLAARR-----------LAKRNFRGKERLFLAEGPQAAREA 46

Query: 61  LNN---PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLA 115
             +    S  + +L AT  A  R              V     Q +  I         + 
Sbjct: 47  AEHRAGGSATLVELFATPEAAERYADIVGAARDAGARVHLASEQVVADISTTVTPQGLVG 106

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +                +L+ +L +V DP N G +LR A A   + ++ T       +  
Sbjct: 107 ICRFLDTPFEEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPK 166

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIAL 231
             +++ G+L H+P     ++  A++ + + G + +       + L+ E          A 
Sbjct: 167 AVRASVGSLFHLPVAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTMGGPTAW 226

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
           + G E  GL  +T+    ++  + + G  ++LN++ AAAV LY +     A
Sbjct: 227 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRA 277


>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 244

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   +    R + Q+ AT++ L R          
Sbjct: 8   KLIRALGQK-KQRRAHGLFLVQGEKNVLELVKTDYR-VQQVFATQDFLDRYSQCLI---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +       + + K     + +       A +  P L        ++ LD V+DP N+G I
Sbjct: 63  YECIEATLEDLTKASTLVSNNA----AIAIVEIPQLIEPEAEGFMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ ++  +   S     +  G+   +   +++                I
Sbjct: 119 IRLADWYGIKHIVASEDCADPYSPKTISATMGSFARVTVTQLNL-----PDYLKHAHLPI 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             +    + +     + +  L++G+E  G+R +  +  T+   +   G  ++LNV+ AA 
Sbjct: 174 YGAFLDGENVHNVSFSAQGILLMGSESHGIREQASQHVTNKITIPSFGGAESLNVAMAAG 233

Query: 271 VALYITQNH 279
           + +   + H
Sbjct: 234 IIIDNIRRH 242


>gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT
           98-5491]
 gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 228

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   L     KI  +   K                P+  +  +   + + K  
Sbjct: 2   VVYGKRIVELILAQHQEKIINIYLAKEVDKTFFNRLKKTQK-PILRLDAKK-AQAMAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  LE   L       +++   ++VL  ++D  N+G++ RSA     DGI+    ++
Sbjct: 60  NHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHN 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +  VL  S+      +                      + L +  +          K 
Sbjct: 120 FKQEGVLRASSGA---MLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNLPISLESKK 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL+LG EG+GL  K          + M     +LNV  A A+ +
Sbjct: 177 ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220


>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           ATCC 14018]
          Length = 331

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++    +++AK     R +   +   ++         +  + G +    AL  
Sbjct: 25  TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGTDSDELVIGRNAALEALRV 82

Query: 64  PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                 QL        +   R            +       +D+I      HQG+ L+  
Sbjct: 83  G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 140

Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 141 PYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFG 200

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K
Sbjct: 201 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 260

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   
Sbjct: 261 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 320

Query: 278 NHF 280
           N  
Sbjct: 321 NAR 323


>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 360

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 31/303 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++    +++AK     R +   +   ++         +  + G +    AL  
Sbjct: 54  TPKAEDRVYH--KAYFAKKAAIKRTFADPRLAARRRVDKLGTDSDELVIGRNAALEALRV 111

Query: 64  PSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                 QL        +   R            +       +D+I      HQG+ L+  
Sbjct: 112 G-VPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQ 169

Query: 120 PLLSPTLD---------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           P    +L                       +    L + LD V DP N+GA++RSA AF 
Sbjct: 170 PYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFG 229

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K
Sbjct: 230 ANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDK 289

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   
Sbjct: 290 LVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVA 349

Query: 278 NHF 280
           N  
Sbjct: 350 NAR 352


>gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b]
 gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b]
          Length = 359

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 116 RRQRQEETRVYGENACQALFQSRPESIVRAWFVQSVTPRFRETLRWLAANRKAYHVVEDA 175

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ V++PHN+G I+RS   
Sbjct: 176 ELAKASGTEHHGGVCFIIKKRMGMAVSEWLSQAEAKDCVLALEDVSNPHNLGGIMRSCAH 235

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   + +  L+     G+  +  SS  
Sbjct: 236 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGESFSAGLEAFRKAGYTIVTTSSHE 294

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL +     K+ L+LG E +GL     +       +   G +++LNVS A  + L   
Sbjct: 295 GTPLAKAELPAKMVLVLGQEREGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEW 354

Query: 277 QNH 279
              
Sbjct: 355 WRQ 357


>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 216

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185
             +   L ++LD V+   N+ AILR+  A     +  T   +         +        
Sbjct: 22  CCKQPTLKVMLDDVHSSQNLSAILRTCDAVGVQHLYYTTSDNRDLRIHKTITQGAHRWVE 81

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                         +K        +    +   P  +        +++G E  G+  +T 
Sbjct: 82  RTRISTEEQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKDGVSSETV 141

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E A ++  + M G++++LNVS AAA+ LY  +   A+
Sbjct: 142 ELADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAE 178


>gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 277

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 8/257 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +       LL T   L  L  D +  
Sbjct: 19  DFRDLNSVDRRPDLPTGKALVIAEGVLVVQRMLASRFIP-RALLGTDRRLGELAADLDRY 77

Query: 89  ---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P      + + + +G       LA           D + +++ + VL+ VND  
Sbjct: 78  PQYADVPFYRASAEVMAEAIGFHLNRGVLASAPRAAELTVDDVIADARTIAVLEGVNDHE 137

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A   + D +I     +        + + G    +P+ R S+    L+ +   
Sbjct: 138 NLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARASSWPTDLELLRDK 197

Query: 206 GFQTIGLSSDSK----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GF+ + ++ D           +++ D++A+++GAEG GL  +T   +     + M     
Sbjct: 198 GFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRASDVRVRIPMSRGTD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ AAA+A Y    
Sbjct: 258 SLNVATAAALAFYERAR 274


>gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
 gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
          Length = 370

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 83/254 (32%), Gaps = 7/254 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88
           K      Q  +   +     +YG +   A   N    I +    ++   R          
Sbjct: 115 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDGIVRAWFLQSVTPRFRDALKWMAA 172

Query: 89  HPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +      V  + + K  G      V   +           L+   ++  ++ L+ V +PH
Sbjct: 173 NRKAYHVVDEEELAKASGTEHHGGVCFIIKKRGGMAAEVYLENAVDTDCVLALEDVGNPH 232

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RS   F   G+I          A +  +  GA            T   +   + 
Sbjct: 233 NLGGIMRSCAHFGVKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGFTTTLDKFRQAG 292

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  S    + + +     K+ L+LG E  GL   T +      ++   G +++LNV
Sbjct: 293 YTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNV 352

Query: 266 SNAAAVALYITQNH 279
           S A  + L    + 
Sbjct: 353 SVATGIMLSQWWSQ 366


>gi|160888268|ref|ZP_02069271.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
 gi|156862214|gb|EDO55645.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
          Length = 253

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++    +     G   V   L         LLAT   L+R    + + 
Sbjct: 7   RIKYIHSLEQK-KNRKADKVFLAEGPKLVGDLL--GHFPCQFLLATSEWLSRNRPLSTVA 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + +    +   Q LA+   P     +  +    L + LD V DP N+G
Sbjct: 64  ---DATEVSEEELSRASLLKTPQQVLAVFRQPDEETDISVIS-HSLCLALDDVQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          + T   + + S    
Sbjct: 120 TIVRLADWFGIEHIFCSPNTVDIYN----PKTVQATMGGIARVRLHYTPLPEFIRSLKDI 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + +       ++          ++LN
Sbjct: 176 PVYGTFLDGENMYGQPLSKNGLIVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 236 VAIATAVVCAEFRRQ 250


>gi|307565244|ref|ZP_07627738.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346057|gb|EFN91400.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 252

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 82/257 (31%), Gaps = 28/257 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K   S   K +   +       G   V   L         +      + ++ +  +  
Sbjct: 20  KIKIYSSLGTK-KGREKSCLFIAEGPKVVDDLLQAGFEA-EDIFEDIEDIKKISFLQHPQ 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  +                    +    L+  L      +L + LD + DP N+G
Sbjct: 78  SKLGVFKL-------------------RQNHYSLNDVLGLFSTQKLSLALDGIQDPGNMG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       S  + ++  G++  +    I+      +  +     
Sbjct: 119 TIIRIADWFGIENIYCSIDTVDCWSPKVVQATMGSIARVNIYYINLPAFIDKVPNDCPIY 178

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264
           T  L+  +    +    +    +++G EGKG+  + ++      ++          ++LN
Sbjct: 179 TTLLTGCNIYNQK---LSQNGIIVMGNEGKGISEELRQKVNKSLYIPNYSLKESSAESLN 235

Query: 265 VSNAAAVALYITQNHFA 281
           V+ A A+     + +  
Sbjct: 236 VAVATAIICAEFRRNRN 252


>gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 290

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 97/266 (36%), Gaps = 15/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----- 83
           D + +   + +         +   G   V   + +    +  +  T+  LA L       
Sbjct: 25  DIRNLNKSDSRPDLPGGKGLVIAEGTLIVPRLVRS-RFPLRAVFGTRQKLASLADGLTAS 83

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVN 142
           +A +    P   +  + +    G + +H+GL          ++D V   +  L V++ V 
Sbjct: 84  EAAIAETVPWFELDREVLAAAAGFD-LHRGLLATADRAPELSVDQVLSGATTLAVMEGVG 142

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  NIGA+ R+A     DG++     +        + + G +  +P+  +   T   Q+ 
Sbjct: 143 DHENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMGHVLTVPFATLPGTTTTWQRS 202

Query: 203 HSWGFQTIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                +               L   +  DKIA+++GAEG GL           A + M  
Sbjct: 203 LDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAMAATDVRARIPMSP 262

Query: 259 IIKALNVSNAAAVALYITQN---HFA 281
              +LNV+ +AA+A Y         A
Sbjct: 263 GTDSLNVATSAAIAFYERLRVQSQRA 288


>gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
 gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
          Length = 270

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 83/236 (35%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +S A++   + +  L   K+             
Sbjct: 17  FSTLTEAQLRNRIEPTKGIFIAESPKVISVAIDAGYKPLALLCEQKHITGDAATIIGRSG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      +  R ++ ++V+D V D  NIGA
Sbjct: 77  DIPVYTGTRELLATLTGYTLTRGVLCAMRRPTPLSLEEVCREARRIVVIDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+  +      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDAPIGRLSDLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +             K+A+I+G EG GL  +T   +  +  + M   + +LNV
Sbjct: 197 ALTDNSIPIDNPALTAEPKLAIIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLNV 252


>gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 368

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 7/254 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88
           K      Q  +   +     +YG +   A   N    I +    ++   R          
Sbjct: 112 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDGIVRAWFLQSVTPRFRDALKWMAA 169

Query: 89  HPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +      V  + ++K  G      V   +           L    ++  ++ L+ V +PH
Sbjct: 170 NRKAYHVVDAEELEKASGTEHHGGVCFIIKKRGGMQAEAYLQEAADTDCVLALEDVGNPH 229

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RS   F   G+I          A +  +  GA                +   + 
Sbjct: 230 NLGGIMRSCAHFGIQGVILQDAGMLESGAAIRTAEGGAEHVKAIDADGFTPTLEKFRQAG 289

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  S    + + +     K+ L+LG E  GL   T +      ++   G +++LNV
Sbjct: 290 YTIVTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNV 349

Query: 266 SNAAAVALYITQNH 279
           S A  + L    + 
Sbjct: 350 SVATGIMLSQWWSQ 363


>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 268

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 106/265 (40%), Gaps = 8/265 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +       R++  +K +++    ++   +     L G+H   A L++  +    +L T++
Sbjct: 8   EPMKTITSRDNPLFKHLKALTVPAQQRKR-GQALLEGLHLAEAYLDSVGQPAHCVL-TES 65

Query: 77  ALARLDWDANLPHPFPVKTV-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           ALA++     +    P + V     +   +       G+A        P  + V  + ++
Sbjct: 66  ALAQVQTAQIVARLDPSRVVRFSDVLFSQLSTLVNGIGIAFVVDVRPRPLPERVEATCVV 125

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +  D V D  N+G+ILRSA A     +  +   + + S  + ++  GA   +        
Sbjct: 126 L--DGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLRAGMGAQFLLRVHEQVEA 183

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L ++    F      S   + L     +  +A + G EG G+  + +   +    + 
Sbjct: 184 ADLLARLAVPVFV---TDSHDAQALYDVDLSGPLAWVFGNEGAGVSAEWRAAVSRRVTIP 240

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
            PG +++LNV+ AAAV  +      
Sbjct: 241 QPGGMESLNVAAAAAVCFFEQCRQR 265


>gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 267

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 1/221 (0%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKI 104
                +     +  AL      +  L   K+ +           +  PV T   + + K+
Sbjct: 33  KGLFIVESPKVIKRALEAGYEPLAILCEHKHIIGDASDVIERYSNDLPVYTGSRELLSKL 92

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G       L     P+L    +    ++ ++V+D V D  NIGAI RSA A   D ++ 
Sbjct: 93  TGYVLTRGVLCAMHRPILRRVEEICHEARRIVVIDGVVDATNIGAIFRSAAALGMDAVLL 152

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +      +    + + GA+  IP+  +      L  +           +         +
Sbjct: 153 RRNSCDPLNRRAVRVSMGAVFCIPWTWMDGSLSDLSNLGFRTAAMALTDNSVSIDDPILM 212

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              K+A+++G+EG GL  +T   A  +  + M   + +LNV
Sbjct: 213 AESKLAIVVGSEGDGLAHETIAEADYVVRIPMSYGVDSLNV 253


>gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 293

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 92/266 (34%), Gaps = 16/266 (6%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++  +         +   + + G   V   + +  R +  +   ++       
Sbjct: 13  DNPRADRVRRVSGLVGRSARIRSGLMLVEGPQAVRELVRHRPRTLRDVYVREDLWDSSPE 72

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V  V       +          A+ +   L   L      + L+V+   
Sbjct: 73  LIASARAATRWVHPVSQAVSAALSSDA--QGVCAVASLDALRRELPDAEVGETLVVIAQG 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A AF    +I       + S  + +S++G++ H+P   + +  +A   
Sbjct: 131 RDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLPVCLVPSFAEARDL 190

Query: 202 MHSW----------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +H                       +    +   +   A   G E +GL  +       +
Sbjct: 191 IHGRGAALLGTSGGSGSLDLADLLVEGISSRSRLSQSHAWAFGNEARGLSAEEMRACDGL 250

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M G  ++LNV++AAA  L+ +Q
Sbjct: 251 VAIPMTGRAESLNVASAAATCLFASQ 276


>gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
 gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
          Length = 141

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%)

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           + +   G   +G   +S++ L +      +A + G+EG GLR  T+ET   +  +   G 
Sbjct: 50  RWLQEQGVWIVGTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGK 109

Query: 260 IKALNVSNAAAVALYITQNHF 280
           IK+LNVS A  + LY      
Sbjct: 110 IKSLNVSVATGICLYEAVRQR 130


>gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti]
 gi|108874927|gb|EAT39152.1| conserved hypothetical protein [Aedes aegypti]
          Length = 462

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 97/304 (31%), Gaps = 32/304 (10%)

Query: 7   KKSEKIFSLKDSH----YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           K+ EK   + D H    Y KL +N   +  MQ      +       L + G   ++ A++
Sbjct: 159 KRKEKSLEITDKHSGIKYLKLLKNDPMFGDMQLLMTSRKRRELKSKLVVEGKRLINDAID 218

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                   +    +    LD          +  +P   + +          + +   P  
Sbjct: 219 AGLLLETVIF---SESCHLDDIRAELATLKLIQLPNHVLQEWSDLVTSPGVIGIFQKPSD 275

Query: 123 SPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              +     +     + +V D+V +P+N+G+ILRS  +   D +I  K  +        +
Sbjct: 276 MSKIVIRNRTAESLPITVVCDNVREPNNLGSILRSCASIPVDRVILLKGCTHPWDPKCLR 335

Query: 179 SASGALEHIPYIRISNL---------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +GA      +    +                 +   +       S+         + +
Sbjct: 336 GGAGAHFRTSVVGPVVMDELAELLPSNPTFLVADNRSERDEESFVLSRYDKANYFDMEHM 395

Query: 230 ALILGAEGKGLRPKTQETATSM------------AHLHMPGIIKALNVSNAAAVALYITQ 277
            L++G E  G+    +     +             H+ +   +++LN ++A +V L   +
Sbjct: 396 VLVIGGETHGVSSDVRRYIRQLQEDSNVGNSLYLVHIPLENGVESLNTASAISVILCEIR 455

Query: 278 NHFA 281
               
Sbjct: 456 RQLN 459


>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 329

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 26/254 (10%)

Query: 46  PENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +  + G + V  AL      S          +   R        H   +       +D
Sbjct: 65  ESDDLVIGRNAVLEALRCGVPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMD 124

Query: 103 KIVGKEAVHQGLALETAPLLSPTL---------------------DAVRNSQLLMVLDHV 141
           +I  + + HQG+ ++  P    +L                       +    L + LD V
Sbjct: 125 RIA-RSSNHQGIVMKAQPFQYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGV 183

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ 
Sbjct: 184 TDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIES 243

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   G+ +IGL       + +     D + ++LG+EG GL    + T   +A + M  ++
Sbjct: 244 LKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMV 303

Query: 261 KALNVSNAAAVALY 274
           ++LN S AA + LY
Sbjct: 304 ESLNASVAAGITLY 317


>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 223

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 14/237 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G      A+   +     +        + +   +L         P    
Sbjct: 1   YRYEENLFLVEGPIVFKEAIKYMAPSYIAI-----RDDKEEQYKDLLGDRDYFIFPSHLF 55

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +KI   ++    ++            + +     + LD ++D  N+G I+R+A AF+  G
Sbjct: 56  NKISDSQSPQGIISYFPMVHKKFQEKSGK----FLYLDKISDAGNMGTIIRTADAFNLSG 111

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I ++      +    ++   ++  +P   +                        +    
Sbjct: 112 VIISEDSCDIYNPKTIRATMASIFRVPIYFLKEDELIKNNFKIIVSALEDSKPIKECD-- 169

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  + L++G E  G+  K  E A     + +   + +LN   AA +  Y  + 
Sbjct: 170 ---LSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSLNAGVAAGIFAYEMRK 223


>gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
 gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
          Length = 250

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 9/241 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTI 101
            + L LYG   V  AL + S     L    +  +    +   D        ++    + +
Sbjct: 7   EKLLVLYGRKPVLEALMDASLDCRTLHLASSNRSAGILKEIVDYAKSRDILIREHTREAL 66

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVA 156
            ++   +   QG+AL+       +++   ++ +     ++ LD V +P N+G I+RSAVA
Sbjct: 67  GRLSKNKKQDQGVALDIRCPSFMSIEQFLSAPIDSATRVLALDGVTNPQNVGMIIRSAVA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GI+  ++   S   ++ K+++G L   P I    L  AL++    G   + L   +
Sbjct: 127 SGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCETLAPALRQCLENGLDIVALDGAA 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L  +  +     +LG E  G+   T+  AT    + M G +++LNV+  AA+  Y  
Sbjct: 187 PDSLFGDRPSRAAVYVLGGETHGVSDATRSLATRSLSIPMAGGVESLNVAVTAALIGYAA 246

Query: 277 Q 277
           Q
Sbjct: 247 Q 247


>gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 290

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 20/260 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPF---PVK 94
              P          +  AL    R    L+  K     L         N        P+ 
Sbjct: 31  EPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAINQTRGLEQTPIY 90

Query: 95  TVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIG 148
            V  + + ++ G    + +G       +  P+L+        +   + +L+ V +P NIG
Sbjct: 91  VVNSKLLRQLAGGGYNLLRGALAAMHRVKRPSLNNFLATMPSDHPRIAILESVVNPTNIG 150

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   DG+I T   +       ++ A G +  +P+  +       + +      
Sbjct: 151 AIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRA 210

Query: 209 TIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               ++ + +    +I +      D++A+ILG+EG GLR  T   +     + M   + +
Sbjct: 211 GYKTAAMALRHNTVDIDDPQLAEVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDS 270

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A+A+A +   N   K
Sbjct: 271 LNVAAASALAFWELGNRKVK 290


>gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
 gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
          Length = 233

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 5/228 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V+ A+      I  +    N                              +     
Sbjct: 8   GKNSVTDAIKA-KLPIEAVYVMSNF---HAEKIKEFSNIKTVVKDANFFKDYNSENHQGY 63

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            L L+        +    N + +++LDH+ DPHN GAILR+A A     II  K  S   
Sbjct: 64  LLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIIIPKDRSTDV 123

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ++ + K +SG    +  I++SN+  ++ K+ SW  +    L   +  P  +   N+  AL
Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKVEYNEHCAL 183

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++G E KG+      T     ++   G ++++NVS A  + L+   N+
Sbjct: 184 VVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFELVNN 231


>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
 gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
          Length = 242

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 22/254 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R  K + S +QK ++          G   +   L N   ++  L +    L         
Sbjct: 5   RQIKIITSLHQK-KYRKSTGLFVAEGKKVIQEFL-NSKFELDSLFSVDANLF-------- 54

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +   V  +    + KI   +  ++ LAL            V    L++ LD V DP N+
Sbjct: 55  ANNSKVTLISEAELKKISFLKTPNKALALF----KIAENAVVNAEGLIVALDDVRDPGNL 110

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R    F    ++ ++      +  + ++  G+L  +  +  +      +   S   
Sbjct: 111 GTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLTRVNVVYANL-----ENYLSETK 165

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALN 264
             +  +    K + +        L++G E  G+  K     T    +   G I   ++LN
Sbjct: 166 LPVFGAFMDGKNVYKTNLPKDGILVMGNEANGVSEKISTLITEKIAIPRFGEIQQTESLN 225

Query: 265 VSNAAAVALYITQN 278
           V+ A  + L   + 
Sbjct: 226 VAMATGILLNEFKR 239


>gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans
           SSM1]
 gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans
           SSM1]
          Length = 223

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 10/230 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG + V  AL +  +K+ ++   +  +  +          P + V     DK   K A
Sbjct: 2   IIYGKNPVKEALKS--KKVRKVFFREQKIFDV-------GNTPFEIVSKSEFDKKFSKHA 52

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                 ++        + + +   + + VLD + DP N GAI+R+   F  +  I  K  
Sbjct: 53  QSVAAEVDFRYYDFDEVYEDIVLEENVAVLDKIQDPQNFGAIVRAGHCFGINYFIIPKHG 112

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S +  + K+++G++ +   ++++N+   L K+   GF       + KK L +     +
Sbjct: 113 SSSVTPAVFKASAGSIIYSKIVKVTNIAKTLDKLLDAGFFITAADINGKKELSEIKTTKR 172

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +ILG+EG+G+R    + A     + M G I +LNVS +AA+  Y    
Sbjct: 173 NCIILGSEGEGIRSNVLKRAHITFKIEMTGKIDSLNVSQSAAITFYHFFK 222


>gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 233

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 5/228 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V  A+      I  +     +               +         +   +     
Sbjct: 8   GKNSVIDAIKA-KLPIEAVYVLSKS---HADKLKEFSNIKIVVKDASFFKEYNSENHQGY 63

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            L L+        +    N + +++LDH++DPHN GAI+R+A A     II  K  S   
Sbjct: 64  LLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDV 123

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ++ + K +SG    +  I++SN+  +++K+  W  +    L  ++  P  +       AL
Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYTGNCAL 183

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++G E KG+            ++   G ++++NVS A  + L+   N 
Sbjct: 184 VVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231


>gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 157

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R++   +VL +   P N G I R+  A      +            L ++      ++P
Sbjct: 1   MRSTMPQLVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVP 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +++ D        G + +G S+  K+        +   L+ G+E +GL P+     
Sbjct: 61  LKYHTHIEDFQAFHQPLGGRWVGFSARGKQNYVSFQFQENDWLLFGSETEGLPPEVLALC 120

Query: 249 TSMAHLHM-PGIIKALNVSNAAAVALYITQNHF 280
            +  ++ M    +++LN+S +AAV L+  +   
Sbjct: 121 QATVYIPMCQPNVRSLNLSVSAAVGLFEARRQL 153


>gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
 gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
          Length = 372

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A  N+    I +    ++   R          +      V  +
Sbjct: 127 RRQRAEETRVYGENACKALFNSRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVDEE 186

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+GAI+R+  
Sbjct: 187 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQAPKQDCVLALEEVGNPHNLGAIMRTCA 245

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++  +  +  ES    ++A G  EHI  I   +    L    + G+  +  SS 
Sbjct: 246 HFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRNAGYTIVTTSSH 304

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 305 KGTSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAE 364

Query: 276 TQNH 279
               
Sbjct: 365 WWRQ 368


>gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS]
 gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS]
          Length = 261

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q      +   ++L G H   AAL    +    + A   +      
Sbjct: 12  SRDNPLLKDLRKLAQDPGAYRKLGRIWLEGDHLCRAALARGVKPAIAVFA--ESFWPTAP 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V    +  + G E+      +   P+    +    +    +VLD + D
Sbjct: 70  AEWGASAIKTVVVADDLLRGVSGLESPAPMGFVLDQPVRPELIPDAPS----VVLDRLQD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G+ILRSA AF    +I  K  +   +  + ++  GA                  + 
Sbjct: 126 AGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGMGAHF----GLRLIEGVEADALD 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  SS   + L Q       A ++G EG+G+    +  AT    +  PG  ++L
Sbjct: 182 ALKIPLVATSSHRGEWLHQARLPHPCAWLMGHEGQGVSAALEARATHHIRIAQPGGEESL 241

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 242 NVAAAAAICLHA 253


>gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
 gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
          Length = 244

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 87/251 (34%), Gaps = 14/251 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N +  + Q+ AT      L         
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSTLSVKQVFATAEF---LAEYRAELGG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNNA----AIAVVEIPSVEIPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++       Q         +
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQLDLPRYLEQSNLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TDFAAEGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNHFA 281
           + L   +    
Sbjct: 234 IILDNLRRQHN 244


>gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
 gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
          Length = 244

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQALA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K+    + +  +A+   P     ++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEATLDDLTKVSTLVSNNAAIAVVAIPH----IEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 258

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 10/243 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKT 95
            +   +     + G H V  A+ +  R +  ++    A      DA L         V  
Sbjct: 8   KKTRVEEGRFLIEGWHLVDEAVKSG-RALHAVVFDPEAKREAAEDALLKRVSRMAEEVFE 66

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAIL 151
                +  +    +    +AL +   +  +             L++LD V DP N G+++
Sbjct: 67  ASGSQLSALSDTRSSQGVVALVSRVGMDFSELLKGLPEAGPARLLLLDEVGDPGNCGSMV 126

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTI 210
           R+A  F  DG++  K  +  E+   +++  G L ++P     +L  A+ +   S      
Sbjct: 127 RAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVDLAAAVSELRRSGVQVFT 186

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +S   L      ++ AL++G E +G+     E A     +   G  ++LN + AAA
Sbjct: 187 TELDESAVSLRDFEFPERCALVIGNEARGVSAAISELADGKLFVERFGSGESLNAAVAAA 246

Query: 271 VAL 273
           V L
Sbjct: 247 VFL 249


>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
 gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
          Length = 266

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----R 80
           +++   K +    QK +   +     + G H V+ AL +   K+  L  T    +     
Sbjct: 7   KHNPRVKALLRLAQK-KGREKAGEFLVEGPHLVAEALRHG--KVRALYLTPEFASSPEGE 63

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       V  + PQ + +          LA+   P  S          LL+++D 
Sbjct: 64  ELIRKAEARKVEVFGLAPQLLARAADTATPQGVLAVVEMPSASLPSLLQVELPLLVIVDG 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+A A +  G++  K           ++ +GA+  +P ++  +  + L 
Sbjct: 124 LQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAIFRLPVVKGPSAEEVLP 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + + G + +      + P          AL++G+EG G  P     A    ++ MPG  
Sbjct: 184 LLRTAGIELVVADPRGEVPFYAHSFLGPTALVIGSEGGGPGPVWSTLA-RRVYIPMPGKT 242

Query: 261 KA 262
           ++
Sbjct: 243 ES 244


>gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 269

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 101/259 (38%), Gaps = 13/259 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            + D+H  +L     D+ +++  N +    ++       G   +  A     +    LLA
Sbjct: 6   QIDDAHDERL----GDFVRLRDVNLRKSLEAEHGLFIAEGDKIIHRAAQAGYQPRSFLLA 61

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            +        D       PV  V     ++I G   VH+G       +++ ++  +    
Sbjct: 62  PRWIDG--LRDVLDATDAPVYVVSEDLAEQITGFH-VHRGALASFKRIIAWSMHDLLAMD 118

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+V + + D  N+GAI+R A     DG++   R +        K++ G++  +P+ R+ 
Sbjct: 119 RLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWARMD 178

Query: 194 NLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +  D L  +   GF               +       +  K+A+++G EG GL       
Sbjct: 179 DWRDGLATLQRAGFTVAALALRDDAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWISQ 238

Query: 248 ATSMAHLHMPGIIKALNVS 266
           A +   + M   I +LNV+
Sbjct: 239 ADAAVRIPMAHGIDSLNVA 257


>gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
 gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
          Length = 363

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 236 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 295 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLS 354

Query: 275 ITQNH 279
                
Sbjct: 355 EWWRQ 359


>gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 196

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 62/147 (42%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +V+D+V+DPHN+ AILRS  AF    +      S         SAS     +      
Sbjct: 24  LTLVIDNVHDPHNVSAILRSCDAFGVPSVHLYYTTSAFPVLGQKSSASARKWVMRTRHSD 83

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             +                 S+  KPL     +   A+ILG E  G  P+  + A    +
Sbjct: 84  ATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGNEHNGASPELAQVADGEIY 143

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G++++LNVS AAA+ LY      
Sbjct: 144 IPMMGMVQSLNVSVAAAIILYEAWRQR 170


>gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 289

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 108/280 (38%), Gaps = 23/280 (8%)

Query: 20  YAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +A LR + R  DY +++    +SR   +           +  A+    R     L +   
Sbjct: 7   HADLREDPRLTDYTRLKDVKLRSRIEPERGLYMAESATVIERAIAAGHRP-RSFLVSARW 65

Query: 78  LARLDWDANLPHP------FPVKTVPPQTIDKIVGKE------AVHQGLALETAPLLSPT 125
           L  L                PV   P + ++++ G        A  Q   L +   L  +
Sbjct: 66  LPTLRPLIAAATGSFEDGEVPVFVAPEEVLERMTGFHLHRGALAAMQRPQLPSVVQLLTS 125

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
               + ++ ++VL+++ D  N+GA  RSA A   D ++ T   +        + + G + 
Sbjct: 126 AQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVF 185

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------KNDKIALILGAEG 237
            +P+ R+ +    +  +   GF    L+         +          + ++A+++G EG
Sbjct: 186 QVPWTRLESWPGDIALLRDAGFTLASLALCEDSISLDDFAALPALRGPDARLAIVMGTEG 245

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL   T   +     + M   + +LNV+ A+AV  + T+
Sbjct: 246 HGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 268

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTV 96
           +      +       G   + A + +   ++  LL       +L    + LP   PV  V
Sbjct: 22  KERDLVGRQGLFIAEGETVLRAFVRDAPERVLSLLIDGKRADKLGEVFDGLPDGVPVYVV 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
               +D I G       LA+   P        L       +++VL  + +  N+G I R+
Sbjct: 82  GQAVLDAIAGFHLHRGVLAVGAKPQPLSADALLARAGERAIVLVLMGIANHDNLGGIFRN 141

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  DG+I              + + GA   +P   ++   D +  +    FQ + LS
Sbjct: 142 AAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAWLAPGEDVVALLERHDFQALALS 201

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   L +     + A++LGAEG GL P     A     + M G   +LNV+  + + L
Sbjct: 202 PAADLTLARLDPPARAAVLLGAEGPGLSPAVMARA-RTVGIPMAGGFDSLNVATTSGIVL 260

Query: 274 YITQ 277
           +  +
Sbjct: 261 HHLR 264


>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
 gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
 gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 353

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 28/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100
                L+G+     AL    R + +LL                        PV     Q 
Sbjct: 47  SRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +   + VHQG+ +E +PL                  QL +VLD + DP N GA+LRS
Sbjct: 107 LDTMCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 214 SDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
                              + +      L+LG EG GL  + Q +   +  +     +P 
Sbjct: 226 GCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LNVS AA + L+   +   
Sbjct: 286 GLESLNVSVAAGILLHSICSQRK 308


>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
          Length = 240

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 21/252 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWDANL 87
            ++  +QK ++ +Q  +  + G H V      A  +P+    QLL T             
Sbjct: 5   DIKKLHQK-KYRNQFGHFLVEGEHLVLELQKAAQLSPALLHSQLLVTDKYQHWQSP---- 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F  + +  + + +I   +     +A+   P +   L     +   + L  + DP N+
Sbjct: 60  ---FETRVISDKQMAQIADTQTPPGIVAVAPVPDIPGALVDGERA---IYLHEIQDPGNL 113

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+   F     + +       +  + +S+ GA+ H+P     +         +  F
Sbjct: 114 GTILRTLAWFGGFRCLLSPGSVDPYNPKVVRSSMGAIFHVPLELDVS-----LAHLAERF 168

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVS 266
             I         +  +        + G E +G+  +  +     M ++   G I++LN++
Sbjct: 169 ARIACLDMDGVAVRNDAFAGHRCYVFGNEARGVPREQLQNFDLHMFNIPGSGAIESLNLA 228

Query: 267 NAAAVALYITQN 278
            A  + +Y    
Sbjct: 229 TAVNICVYELMR 240


>gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
 gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
          Length = 332

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 15/291 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNN 63
           + +   ++   K    A+         + +   + K R     ++  L G + V+ A   
Sbjct: 38  TPRAENRVGHPKARAKARAESRAAQPTRAKQLEKIKRRFDVPEDHEILCGRNAVAEA-AY 96

Query: 64  PSRKIFQLLATKNAL--ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
            S  I ++    +A    RL            PV       +D +    A HQG+A+E  
Sbjct: 97  ASVPITRVFMAVSAQSDDRLGAVVRRAALLGAPVLETTKLDLDALTD-SATHQGVAIEVP 155

Query: 120 PLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                T         A+ ++ LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   
Sbjct: 156 AYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGV 215

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIAL 231
           +A + K ++GA   +   R +NL   L+++   G   +GL       +E     D  + L
Sbjct: 216 NATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVEDLTLADSPLVL 275

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + GAEG GL    +ET   +A + +   +++LN + A  ++LY       +
Sbjct: 276 VTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDRLRRR 326


>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 314

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 50/317 (15%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNL+ +  S  + S  + H  ++R        +   + + R  ++ +   + G   V  A
Sbjct: 1   MNLLERISSPTVMS--NPHADRVR-------DIAKLSTR-RGRAKKKQFMVEGPQAVREA 50

Query: 61  LNNPSR--KIFQLLATKNALAR---LDWDANLPHPFP---------VKTVPPQTIDKIVG 106
           L    +   +  +  T++A  R   +       H  P         ++ V  + +  +  
Sbjct: 51  LKAHLQSPVLDAVYVTESAYERHPDIAELLEQAHGTPTPEEGRRVFMRVVTDEVLAAMAD 110

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                  +A+      S ++    N    +L+ VL  + DP N G ILR A A   D +I
Sbjct: 111 SVTPQGIIAISFMVDTSFSVLWGENALNPKLIAVLSRIQDPGNAGTILRVADAAGADLVI 170

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
           TTK      +    +S +G+L H+P I+   L +  + + S G   +         L+  
Sbjct: 171 TTKGSVDLYNPKTVRSTAGSLFHVPIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQDL 230

Query: 223 ----------------------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                                    +     + G E +GL  + +  AT    + + G  
Sbjct: 231 IDHAAVLRAGLDGEAPAGVKGAFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAA 290

Query: 261 KALNVSNAAAVALYITQ 277
           ++LNV  AAA+ LY + 
Sbjct: 291 ESLNVGTAAAICLYASA 307


>gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 288

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 19/273 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----- 78
             ++   K + +  +  R   +     + G   +  AL+        L   +        
Sbjct: 11  SPSNPRLKALVALRR-RRVREETGQTIVEGHEEIRLALDAGVTP-RTLYVAEELFSPSGR 68

Query: 79  --------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPTLDA 128
                        +        +  + P    K+  +E    GL      +     +L  
Sbjct: 69  AGSQEIGTQPELVERLRAAGVEIVRLSPAAYAKVSYREG-PDGLLAVVDDVGVPLASLTV 127

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S L +V   +  P N+GA+LR+A A   D ++                AS       
Sbjct: 128 DGPSWLGLVAQRIEKPGNLGAMLRTADAAGVDAVVAAD-PVTDWGNPNVVRASKGTLFAV 186

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +     ++ L  +       +  + ++     +     ++A+ +G+E  G+       A
Sbjct: 187 PVASGTTSETLAWLAHGAVTLVVTTPETDLLHTEVDYTGRVAIAVGSEKHGVDDALLVAA 246

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           T    + M G   +LNVS AAAV LY      A
Sbjct: 247 THRVRIPMHGRANSLNVSVAAAVVLYEAVRQRA 279


>gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 225

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 1/161 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                     R + L +V+++V+ PHN  AI+RS  A                      +
Sbjct: 6   HQRFIDTLKRRQTSLTVVMENVHKPHNFSAIVRSCEAVGVHRAHAVY-PEGGIGNNAGTT 64

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                        +  T   Q              ++     +       A+++G+E  G
Sbjct: 65  VGAHKWVQVDTHRNIQTPFQQLKAQGFQLLTAHLDETAVDFREVDYTQPTAVVMGSELHG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +  + A     + M G+ ++LNVS A A+ L+  Q   
Sbjct: 125 ISEEAAQLADHSIVIPMLGLTESLNVSVATALILFEAQRQR 165


>gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 228

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSES 173
             +T       + + R + L + L+ V+  HN+ AI+RSA A  C  +           +
Sbjct: 1   MQQTRYQRIEDVLSRRQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPEKQKWLT 60

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
              +  +   LE   +  I +   A+++ +          S+      +       A+I+
Sbjct: 61  NNTSGGSKNWLETHLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTKPTAIIV 120

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G E  G+  K  E A     + M G++++LNVS AAA+ L+  Q   
Sbjct: 121 GQEKTGISEKALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
 gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
          Length = 106

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 47  LDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 102


>gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 281

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 6/252 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFHP-HALLGTDRRLTELKDDLAGS 79

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA           + +  ++ + VL+ VND  N+G
Sbjct: 80  T-VPFYRTSADIMARVVGFHLNRGVLAAARRVGEPSVAEVIAGARTVAVLEGVNDHENLG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D ++     +        + + G    +PY R +     L  +   GF+
Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATCWPAELMTLKENGFR 198

Query: 209 TIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++               + +++A+++GAEG GL P T   +     + M     +LN
Sbjct: 199 LLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVRVRVPMSRGTDSLN 258

Query: 265 VSNAAAVALYIT 276
           V+ AAA+A Y  
Sbjct: 259 VATAAALAFYER 270


>gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 198

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 9/196 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146
           +  P + +D++V  E  HQG+  + A      L+               ++LD + DPHN
Sbjct: 2   QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G
Sbjct: 60  LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G  +  K           I L++G+EGKG+     E    +  L M G + +LN S
Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179

Query: 267 NAAAVALYITQNHFAK 282
            AA++ +Y       +
Sbjct: 180 VAASLLMYEVYRKRNE 195


>gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
 gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
          Length = 281

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 14/268 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARL 81
            +   +++ S  ++SR       + + G      A+       +    +   +++A    
Sbjct: 14  QNAAVRRIVSL-RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKLSESAGPPD 72

Query: 82  DWDANLPHPFPV-----KTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQ- 133
             +  +     +     + V  +   KI    +  + +A   AP       L+    +  
Sbjct: 73  MPEQAVARQHAIDSGVHRWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLERSSWNDG 132

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V  P N+GA+ RSA A     ++ +   S   +    + + GA+  +P    S
Sbjct: 133 LILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASGS 192

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                   + + G++   +  +  +PL       K+A++LG+E  GL  +    +     
Sbjct: 193 ES-QMEAFLKTHGYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPVA 251

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M G + +LNVS +AA+  +      +
Sbjct: 252 LPMAGHVDSLNVSVSAAIVAFEAVRQRS 279


>gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
 gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399
 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 224

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           V+++  AL             +N       +       P+     +     V        
Sbjct: 6   VNSIKEALLEGKVVRIYHSGERNPKISEILEIARKKGVPIYRKDGERFSAEVSPIKYAD- 64

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                         A+     ++ LD+V D  NIGA +R+A  F   G++  KR   S  
Sbjct: 65  -------FEFIVKKALTGGSFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQ 117

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               K+++GA+ HIP  R+ N   A++K+   GF T+    D +      +     A+++
Sbjct: 118 EGAVKASAGAVFHIPIARVENFASAIKKLKKLGFTTLAADLDGEDLEAVSLL-LPAAVVI 176

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G E +G+    ++    +  +   G + +LN+S AA + LY     
Sbjct: 177 GGEDRGVSRPVKKQCDFVVKIPGVGKVNSLNLSVAAGIFLYTLSRQ 222


>gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 380

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V  +
Sbjct: 136 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDE 195

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+               L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 196 ELARASGTE-HHGGVCFLIKKRRGLDVTAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 254

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 255 HFGVKGVLV-NDASQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 313

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 314 KGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 373

Query: 276 TQNH 279
               
Sbjct: 374 WWRQ 377


>gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 345

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
 gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
          Length = 364

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 88/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEE 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 237 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 296 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 355

Query: 275 ITQNH 279
                
Sbjct: 356 EWWRQ 360


>gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 233

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 5/228 (2%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V  A+      I  +     +               +         +   +     
Sbjct: 8   GKNSVIDAIKA-KLPIEAVYVLSKS---HADKLKEFSNIKIVVKDASFFKEYNSENHQGY 63

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            L L+        +    N + +++LDH++DPHN GAI+R+A A     II  K  S   
Sbjct: 64  LLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDV 123

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ++ + K +SG    +  I++SN+  +++K+  W  +    L  ++  P  +       AL
Sbjct: 124 TSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYAGNCAL 183

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++G E KG+            ++   G ++++NVS A  + L+   N 
Sbjct: 184 VVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231


>gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 371

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 112/295 (37%), Gaps = 26/295 (8%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKS---RHTSQPENLF-------------LYGVHTV 57
           S  DS         +  +  ++F ++    +  +  EN               + G+  V
Sbjct: 76  SRFDSDRPSFGDRPKRIEGERNFGERREFDKSRANQENFVPAVGDADAAPQVAVGGIKEV 135

Query: 58  SAAL-NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK------- 107
              L  NP +    L   K+   +L     L       V+ V  + +D            
Sbjct: 136 EELLNKNPLQVHRVLFMHKSGNPKLYELQKLAKRAHVHVQQVDSKILDSYARPNHGVVAL 195

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               + L                  +L+ V  ++ DP N+GA +RS++A   D ++   +
Sbjct: 196 MNEKELLNWMDVREEFFKARDTGEKKLIAVATNIEDPRNLGACIRSSLALGVDILLLPAK 255

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +  +A++++GALE +   R  NL  A+ ++   G+Q +GL +D++  L      D
Sbjct: 256 GMCGITPSVARTSAGALEKLRICRPDNLEGAIGELKMAGYQILGLDADTETNLAGFDFAD 315

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + L +G E  GL P  ++   ++  + M     + N S A ++ LY       K
Sbjct: 316 HVVLAVGGEDVGLPPFIKKQCDAVLRIPMKPEAHSYNASVALSLGLYEYARLRIK 370


>gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 239

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 95/259 (36%), Gaps = 26/259 (10%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + +N R  K++    QK ++          G   +   L+     ++      +   +  
Sbjct: 2   VSKNQR--KQILQLKQK-KYRLSTGLFVAEGEKVIEELLSASWDCVYLFSIAPHFHPQS- 57

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                      + + P  + ++   +     L +      SP L A+  S + + +D V+
Sbjct: 58  -----------EVIDPSVMKQLTHFKTPSPVLGVF----KSPDLKALSKSNITLAVDGVS 102

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R    +    +I +       ++ + +++ G++  +    + +L   L  +
Sbjct: 103 DPGNLGTLIRICDWYGLSDLICSSNTVDCYNSKVVQASMGSIVRVQCHYVDDLHSTLINL 162

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GI 259
           +   +     +  + + L +    ++ + + G+E  GL     +       +        
Sbjct: 163 NKPIY----GADLNGQSLYKTDFEEQASFVFGSESHGLSAAVSKIINHKITIPNFRSGRG 218

Query: 260 IKALNVSNAAAVALYITQN 278
            ++LNV+ A A+ L     
Sbjct: 219 AESLNVAVAGAIFLSEIFR 237


>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 276

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 10/257 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++        T +         H +  AL++    +  +LA+++A   LD  + 
Sbjct: 25  NPLLKDVRRAISHGALT-EQGWCVAETPHLLEEALHSQCE-VKTVLASESA---LDGASA 79

Query: 87  LPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                P+K V  P  +   +      QG+     P         +   L++VLD + DP 
Sbjct: 80  HLRSLPLKLVSLPDALFAGIAGTETTQGVIALVQPPAWKLEQLFQRPALVVVLDGLQDPG 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMH 203
           N G I+R+A AF   G++  K      +    ++++G+L  +P++   +  +       H
Sbjct: 140 NAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRASAGSLFRVPFLHGVDAAVACTALAQH 199

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    +  S + L          L++G E  G+    +  A     +   G +++L
Sbjct: 200 QVELFAGVPAGASSRTLAAVDLARPCGLVIGNEAHGVSRGLRAAAHD-VSIPTVG-VESL 257

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ LY  +   
Sbjct: 258 NAAMAASILLYEARRQR 274


>gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 345

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +KI L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKIVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 256

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 103/267 (38%), Gaps = 18/267 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  LK +       +++ YK ++S  +K ++  +     + G      A+ +       +
Sbjct: 5   IRLLKQAIKMITSTSNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNLNIKQVI 63

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +                          +T + +       +G+    + +    + + + 
Sbjct: 64  IREGENFLDE-----------CVYFDSKTFNSLSEM-NNPEGIICVVSFIEQKDVKSDQ- 110

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++ L+++NDP N+G I+RSA AF  + I+ +       ++   +SA G+L     I 
Sbjct: 111 ---ILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFR-MNIS 166

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N+    +               + + + +    +K  LI+G E  G+  + ++ A   
Sbjct: 167 YENINVLEKYKSKGFKIYETSLEKNSRSILEIKNKEKHVLIIGNEANGISDEIKKYADEF 226

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             + M  + ++LN S AA+++++    
Sbjct: 227 LIIPMDNVTESLNASIAASLSMFYLSK 253


>gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
 gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
          Length = 363

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 236 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 295 HKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 354

Query: 275 ITQNH 279
                
Sbjct: 355 EWWRQ 359


>gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
 gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
          Length = 394

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100
              + E   +YG +   A   +    I +    +    R       L        V    
Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFVQEVTPRFREALRWLAANRKAYHVVEDA 210

Query: 101 IDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                     H G+       +       L        ++ L+ V++PHN+GAI+RS   
Sbjct: 211 EITKASGTEHHGGVCFLIKKRMGMAVSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCAH 270

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I  +  ++ L+     G+  +  SS  
Sbjct: 271 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQ 329

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL Q    +K+ L+LG E +GL     +       +   G +++LNVS A  V L   
Sbjct: 330 GTPLAQAQLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEW 389

Query: 277 QNH 279
              
Sbjct: 390 WRQ 392


>gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 246

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 17/254 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +     K +   Q       G   V   L        QL AT              
Sbjct: 6   QIKFVHQLELK-KFRKQEGLFIAEGHKVVGDLLKAGYTP-KQLFATAEW-------IAAN 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V    + K+  ++   Q LAL   P            QL ++LD+V DP N+G
Sbjct: 57  PVAGAIEVTNDELTKLSLQQHPQQVLALFPIPTPQH--QTPSTQQLSILLDNVQDPGNLG 114

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  D I  ++    + +  + ++  G++  +  I I  +         +   
Sbjct: 115 TIIRIADWFGIDTIFCSEGTVDAWNPKVVQATMGSIARVHLIYIDTMQLLDSLPKDFPVY 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GIIKALNV 265
              L  ++    E    + +  +++G EG G+    +   T    +          +LNV
Sbjct: 175 GTFLDGENIYTQE---LSQQGLIVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNV 231

Query: 266 SNAAAVALYITQNH 279
           + A A+     +  
Sbjct: 232 AIATAITCSEFRRR 245


>gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
 gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8801]
 gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
          Length = 152

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 1/150 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL H   P N G I R+  A   +  +            L ++      ++     
Sbjct: 1   MLKIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L +          + IG S   + P  Q    +   L+ G+E +GL     E   +  
Sbjct: 61  KDLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSVLENCDATL 120

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           ++ M    +++LN+S +  + L+  +   +
Sbjct: 121 YIPMSQSKVRSLNLSVSVTIGLFEARRQLS 150


>gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 273

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 91/250 (36%), Gaps = 9/250 (3%)

Query: 41  RHTSQPENLFLYGVHT-VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +H  +    F++G        L      +  ++  +  L     + ++    PV  V   
Sbjct: 20  KHADKSGEGFVFGEGPLCVERLLASRFPVRCIIGFEGKLDTFLANHDV-GDIPVYQVTRA 78

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           T+ ++ G +     +A           + +  ++ L +++ V D  NIG++ R+A     
Sbjct: 79  TLGEVTGFDMHRGLVAAADRAEAWTVDEVIEGARTLAIMEGVGDHENIGSLFRNAAGMDV 138

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGI+     +        + + G +  +P+ R        Q+      +           
Sbjct: 139 DGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLEQLREKGFRLVSLTPH 198

Query: 220 LEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +     D      K+AL++GAEG GL           A + M     +LNV+ +AA+A 
Sbjct: 199 PDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNVRARIPMAEGTDSLNVATSAAIAF 258

Query: 274 YITQN-HFAK 282
           Y  Q     +
Sbjct: 259 YERQRSQRLR 268


>gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 278

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALA 79
            ++   +   +  Q++        +     + GV  ++ AL         L       L+
Sbjct: 3   RRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQALAAGWPLETLLYRLGGPELS 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKI-----VGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                       P+  + P+ +  +        E V   ++ +         +   ++ +
Sbjct: 63  GWARQILDTTDVPLVGLVPELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAPV 122

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPY 189
           ++V D  N P N+G ++RSA +F    ++ T   +        ++++G+     +  +P 
Sbjct: 123 VVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVFRVPG 182

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                     Q         +G        +      D   L++G E  G+    Q+   
Sbjct: 183 PAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDACD 242

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + M G   +L   +A AVALY      
Sbjct: 243 ELVAIPMGGTASSLGAPSAGAVALYEISRQR 273


>gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 260

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 101/254 (39%), Gaps = 5/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  ++      +  ++     +  + G+  +  AL       + L+   N + + ++ +N
Sbjct: 8   NNIFQYFYKLQKIKKNILLNNSFSVEGLKEIKMALIANYIPEYILIY--NKICKYEFISN 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                    +      KI  ++     +A      L+     +  S L ++L+ +  P N
Sbjct: 66  FF--IKKYMITSFIYKKISYRKKTGGIIASFFKKKLNIKNIKISLSALFLILEGIEKPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHSW 205
           +GAILR+A A   D I+         +  + +S+ G +     +     +  +    +  
Sbjct: 124 LGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTIFTNKIVIANYKIIISWLNKNKI 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +  ++        ++IK   +A+I+G+E KGL     +   +M ++ + G I +LNV
Sbjct: 184 KIISTSVNKIYNNFFMKKIKKKSLAIIIGSESKGLSDIWFKNKKNMINIPIKGKIDSLNV 243

Query: 266 SNAAAVALYITQNH 279
           S + A+ LY     
Sbjct: 244 STSTAIILYEILRQ 257


>gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 153

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A      +            L ++      ++P    +++
Sbjct: 4   LVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRYLKRAGLDYWPYVPLKYHTHI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D        G + +G S+  K+        +   L+ G+E +GL P+      +  ++ 
Sbjct: 64  EDFRAFHQPLGGRWVGFSARGKQNYVSFPFQENDWLLFGSETEGLPPEVLALCQATVYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S +AAV L+  +   
Sbjct: 124 MSQPNVRSLNLSVSAAVGLFEARRQL 149


>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
 gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
          Length = 359

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 85/286 (29%), Gaps = 30/286 (10%)

Query: 19  HYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYG-------VHTVSAALNNPSRKIFQ 70
           H   +   ++   K      Q S +     +  + G       +H    +L    R +  
Sbjct: 70  HVKSITSTSNPFVKHCLKLQQNSSYRHSHASALVVGSTPIRWEIHRSQESLK--ERTVEL 127

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----------QGLALETAP 120
                   A +    +      V  V    + K+   ++                     
Sbjct: 128 EYLLLLDEAEVSQVLDDKSSARVVRVSSVVMKKLSQLQSTESVDAIALMKFPTTYFVVDN 187

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV----- 175
               +     +   ++VL+ + DP N+G +LRSA+A    G+          ++      
Sbjct: 188 HQDCSRKWFPSPHRILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRAS 247

Query: 176 ----LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
                         +            +   H          S   + L        + L
Sbjct: 248 RGASFQIPIVSGSWYHLEALKDEYQMKMLAGHPDCNDKSRPVSQLSQGLADCFARVPLCL 307

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +LG+EG GL  K Q     +  + M G  ++LNV+ A  + LY+ Q
Sbjct: 308 VLGSEGHGLSEKAQREC-ELLSIPMAGEFESLNVAVAGGIFLYMLQ 352


>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 269

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 10/247 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQ 99
             + + + L G   +  AL++  +  F L +    +   + D  L       P  +V P 
Sbjct: 22  RQEYQLVPLEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDPS 81

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +        QG+                  + +++L  V DP N+G ++RSA AF  
Sbjct: 82  -LFQKTAFTETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGF 140

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++ +K      +  + +S+ G+L HIP +  S +    Q +    +  +       KP
Sbjct: 141 QGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKP 200

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETA-----TSMAHLHMPGIIKALNVSNAAAVAL 273
           +      N  +AL +G E +GL+    +            + M G  ++LN   A ++ +
Sbjct: 201 IMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQVRHQKVEIPMFGKAESLNAGIAGSIMM 260

Query: 274 YITQNHF 280
           Y      
Sbjct: 261 YELSKKR 267


>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
 gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
          Length = 268

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+  + AT+     L+ +A+    
Sbjct: 32  KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATEAF---LEQNASALSG 86

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 87  FDCIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 142

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   +         +
Sbjct: 143 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEEANLPVYGAFL 202

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T+   +   G  ++LNV+ A  
Sbjct: 203 EGESVHK-----TEFAAEGILLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 257

Query: 271 VALYITQNH 279
           + L   + H
Sbjct: 258 IILDNMRRH 266


>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
 gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
          Length = 244

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 94/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+  + AT+     L+ +A+    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATEAF---LEQNASALSG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 63  FDCIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   +         +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEEANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T+   +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFAAEGILLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   + H
Sbjct: 234 IILDNMRRH 242


>gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
 gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
          Length = 244

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +         + K     + +       A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 63  YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +    +   +   Q         +
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S           + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHNMT-----FSAQGILLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 276

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 8/258 (3%)

Query: 25  RNHR---DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           R H    D++ + + +++         +   G   V   L +    +  LL  +  L  L
Sbjct: 13  RAHPGLDDFRDLSTADRRPDRPGGRGLVIAEGTVVVGRLLASRY-PVRALLGVERRLREL 71

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           + +       P      +T+  +VG       LA+   P        V  +Q+L VL+ V
Sbjct: 72  EDELA-GVDVPAYVTSAETMADVVGFHLNRGVLAVADRPEPPTVSQIVDGTQVLAVLEGV 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+GA+ R+A A    G++     S        + + G +  +P+    +    L  
Sbjct: 131 GDHENLGALFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFATFDSWPGGLDV 190

Query: 202 MHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + GF        +        +E     IAL+LGAEG GL  +  E A     + M  
Sbjct: 191 LRARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAIEAADVAVRVEMVS 250

Query: 259 IIKALNVSNAAAVALYIT 276
            + +LNV+ AAA+A +  
Sbjct: 251 GVDSLNVATAAAIAFHEV 268


>gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 230

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            ++G ++V  A+      I ++   K  +       N      V  +   ++DK+  +  
Sbjct: 4   IVFGKNSVLEAIEY-EFPIEEIYLQKGLVN------NNLKFKKVVYLDRNSLDKLT-ENG 55

Query: 110 VHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG A +        L       S  +++LDH+ DP N GAI+RSA  F    II  K 
Sbjct: 56  NHQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKN 226
            +   +  + K++SG  +++  I++++L DA+++  +   +      +   K L     N
Sbjct: 116 RACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALY 274
           +KIA+I+G EG G+     + +  + ++      +++LNVS A  + LY
Sbjct: 176 EKIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLY 224


>gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 231

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           TL + R   L + +D V+ PHN+ AI+R+A A     +          +     S S   
Sbjct: 14  TLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAVFPEDVKFTGHHTSSGSKRW 73

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                          +             SD+              L++G+E  G+  + 
Sbjct: 74  VTTHKHSNLKS-GIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLLVGSELVGVSDEA 132

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            E A     + M G++++LNVS A A+ LY  Q   +
Sbjct: 133 AEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQRS 169


>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 241

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 21/248 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +QS ++K +   +     + G   +    N+  +    L      L R        
Sbjct: 6   TIKVLQSLDKK-KFRQKYNLFLVEGNKIICELFNSNFKVKEILSTDPQKLDR-------- 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  +    + KI   +          A         + +  + +VLD + DP N+G
Sbjct: 57  TDIPVTHISENELKKISFLKTP----KDSVAVCYLAEEKKLEDKNIQLVLDGIQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + +I ++      +  + ++  G+   +  +          +  S    
Sbjct: 113 TIIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVNVVYTDL-----VEYLSKTEN 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
               +    + +    K +KI LILG EG G+RP+T++       +   G     ++LNV
Sbjct: 168 VNIGTDMEGENIYTFEKPEKINLILGNEGNGMRPETEKLLQKSISIPRFGKSQSTESLNV 227

Query: 266 SNAAAVAL 273
           S AA + L
Sbjct: 228 SMAAGIIL 235


>gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
 gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
          Length = 244

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + + K+  + AT      L   AN+   
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEYANVLAG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +         + K+    + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  YECTEAALDDLTKVSTLVSNNA----AIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 264

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 18/261 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--- 89
           M+S   +S   S+       G   V  A+   +    +L AT  A  R            
Sbjct: 1   MRSLTGRS-ARSRHGRFLAEGPQAVREAVAGGA--ALELYATAEAAQRYPEVLAAAATAG 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                 V  + +  +         +A+      +         +L+ VLD V DP N G 
Sbjct: 58  GPRTWLVTDEVLAAMTDTVTPQGLVAVCPTTTSTLDDVLAARPRLVAVLDRVRDPGNAGT 117

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--------- 200
           +LR+A A   D ++ T+      +    +S +G+L H+P +    L DA+          
Sbjct: 118 VLRAADAAGADAVVLTEGSVDPFNPKCVRSTAGSLFHLPVVVGVPLADAVTALRRAGSTV 177

Query: 201 ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                           + ++  ++        A + G E  GL    +  A ++  + + 
Sbjct: 178 LAADGEGDLDLDDLADAAARGVVDGVDLRRPTAWVFGNEAAGLDAAGRGLADAVVRVPLH 237

Query: 258 GIIKALNVSNAAAVALYITQN 278
           G  ++LN++ AA V LY +  
Sbjct: 238 GRAESLNLATAAVVCLYASAR 258


>gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
 gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 279

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 86/243 (35%), Gaps = 9/243 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++    +     +       G   +  A          LLA +      D    L
Sbjct: 16  ADYVSLRDVTLRKSLEVEHGLFIAEGAKVIRRACEAGYLPRSFLLAPRWIDGLRDLFDGL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  + + + V    VH+G           +   +  ++ L+V + + D  N+
Sbjct: 76  --DVEVFVVS-EALAEQVTGFHVHRGALASMRRQTRWSAVDLMAARRLVVCEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GAI+R A     DG++   R +        K++ G +  +P+ R+ +             
Sbjct: 133 GAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGF 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +    + G  +  +   +      KIAL++G EG GL       A  +  + M G + 
Sbjct: 193 TVAAMAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWISQADVVVRIPMAGGVD 252

Query: 262 ALN 264
           +LN
Sbjct: 253 SLN 255


>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 296

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI 101
                    G   V  AL  P   + +L  T  AL R             PV TV    +
Sbjct: 37  EAAGRFLAEGPQAVREALARPHT-VLELFGTPAALDRHLDLVARATTADVPVSTVTDDAL 95

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +    A    +A+     L       R  +L+ VL  + DP N G +LR+A A     
Sbjct: 96  AGLAETVAPQGLVAVCQHLDLPLATVLARTPRLVTVLAGIRDPGNAGTVLRTADAAGAQV 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSK 217
           ++         +  + ++++G+L H+  +R S+    +  + + G      T   + D  
Sbjct: 156 VVFAGAAVDPYNGKVVRASAGSLFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDLD 215

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +        A I G+E  GL  +    A +   + + G  ++LN++ AAAV LY + 
Sbjct: 216 DLADAGRLAAPTAWIFGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLYASA 275

Query: 278 N-HF 280
               
Sbjct: 276 RAQR 279


>gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
 gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
          Length = 394

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100
              + E   +YG +   A   +    I +    +    R       L        V    
Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFIQEVTPRFRESLRWLAANRKAYHVVEDA 210

Query: 101 IDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                     H G+       +       L        ++ L+ V++PHN+GAI+RS   
Sbjct: 211 EITKASGTEHHGGVCFLIKKRMGMAVSEWLSQATTKDCVLALEDVSNPHNLGAIMRSCAH 270

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I  +  ++ L+     G+  +  SS  
Sbjct: 271 FGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQ 329

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL Q    +K+ L+LG E +GL     +       +   G +++LNVS A  V L   
Sbjct: 330 GTPLAQAKLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEW 389

Query: 277 QNH 279
              
Sbjct: 390 WRQ 392


>gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
 gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
          Length = 287

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 13/248 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           R   +     + G   V   L    R  +  L+ T +  ARL  +A LP   P   +P +
Sbjct: 38  RGRREDGRFIVEGALAVERLLEQAERFPVESLVCTPSHGARL--EAALPPGVPAFVLPRK 95

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILR 152
            I ++ G +     LA    P     L+      L       ++V   + DP N+GA++R
Sbjct: 96  RIAELAGFDFHRGVLACARRPPTRAVLEPWEIEALRRREQVTVVVASGLADPRNLGALIR 155

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP---YIRISNLTDALQKMHSWGFQT 209
           +A AF  D ++   R + + + +  +++ G +  +P      +    + L++        
Sbjct: 156 NAAAFGVDWVVVDGRGADAFARLTIRASVGNVFRVPLLVSEALPATVEQLRRELPATVVA 215

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              + + +       +  +  +++G EG GL       A     + +     ++NV+ A 
Sbjct: 216 ATPAGELELDALAVDRPARQIVLVGNEGAGLDEDALARADRRVRIPVVAGADSVNVAAAT 275

Query: 270 AVALYITQ 277
           A+ LY  +
Sbjct: 276 AILLYALR 283


>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 267

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 97/261 (37%), Gaps = 11/261 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + K +    +K  +   P    + GV     A+   +    ++   +      D   
Sbjct: 8   QNTEIKDLIKVYKKKNY---PNGFLVEGVKEFEMAIE-GNFLPQKIFICEKIFHEYDMIK 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVND 143
           +         +  +   K+  +E     +A      +   L  + + N+ L+++LD +  
Sbjct: 64  SYHTMT--CLISMKIFRKLAYRENSGGIIAFFREKSIIDKLINEKITNNSLILILDGIEK 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQ 200
           P NIGA+LR+A A     II     +   ++ + + + G++             ++   +
Sbjct: 122 PGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKIFIEKMGSIISWLQE 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                          +K   + ++    +A+I G+E KG+       A  +  + M G +
Sbjct: 182 NKVKIVGTGFYNHQKAKNLYKTKLNYSNLAIIFGSENKGISNIWFNIANKIITIPMFGNV 241

Query: 261 KALNVSNAAAVALYITQNHFA 281
            +LNVS+A ++ +Y       
Sbjct: 242 DSLNVSHAMSIIIYEIIRQRN 262


>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
 gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           R   L + LD V+  HN+ AI+RSA A     I           ++  +  +    E+  
Sbjct: 16  RQIDLTLCLDEVHKHHNLSAIVRSADAVGIHHIHSVWPEGGKRLTSSTSGGSKNWTENHI 75

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  + +    ++             S+              A+ILG E  G+  +    A
Sbjct: 76  HHTVEDAIATIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQALALA 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ LY  Q   
Sbjct: 136 DQHIIIPMVGMVQSLNVSVAAAIILYEAQKQR 167


>gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 165 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 283 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 274

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 30  RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 89

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 90  ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 148

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 149 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 207

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 208 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 267

Query: 276 TQNH 279
               
Sbjct: 268 WWRQ 271


>gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 345

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 345

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 345

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 265

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 94/256 (36%), Gaps = 11/256 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N       +       + +    L       V   L +   ++  LL   + L ++    
Sbjct: 10  NDPRLSPYRGLANSRAYRA-TGLLIAESRFLVERLLAS-ELEVESLLV--DDLTKVPTLP 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHV 141
                 P+  +P   + ++VG    H+G+       L   L  V         LMV   V
Sbjct: 66  AGREATPIYCLPRDQLQELVGF-NFHRGVMACARRPLLSDLQQVAWPDRERLTLMVAAQV 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDAL 199
            DP N+G+++R+  AF  D I+   R     S    + ++G    IP +  SN      +
Sbjct: 125 VDPENLGSLIRAGSAFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNV 184

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +   +      L   +    ++  ++D+ AL+ G EG GL       A     + M   
Sbjct: 185 ARSLGFQLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRCVTIPMSRG 244

Query: 260 IKALNVSNAAAVALYI 275
             +LNVS AA V LY 
Sbjct: 245 SDSLNVSMAAGVFLYH 260


>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
 gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
          Length = 244

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT + L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATADFLEQHSQELN---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +             +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFSAEGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 234

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 8/233 (3%)

Query: 58  SAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            AAL++   ++ +++  +    A+     +A       V+      +  + G     QG+
Sbjct: 2   LAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGNGRHDQGV 61

Query: 115 ALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             +        L     D     + +++LD +  P N+G ILR+A A   DGI+   R  
Sbjct: 62  LADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGV 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S   ++ K+++G   H P +R      A + +   G+    L + +++ + +     + 
Sbjct: 122 ASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYEADFGSRA 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +LG+E  GL    Q        + M G +++LNV++AAAV  +       K
Sbjct: 182 VFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 234


>gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 269

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 95/257 (36%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    KM+      +     +   + + G   +  AL      +  +  T+ A      
Sbjct: 9   DNPSSVKMRRIAGLSRRSARLKSSLIRIEGAQALREALRFAPDSVEDVYLTEAAGVSEPE 68

Query: 84  DANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +L    PV    V  +    +          A          L      ++ ++L   
Sbjct: 69  LLSLVEAAPVHGHWVSERVARVVAEAAQGWFATASFAVFPPLHEL----RGRVALILPET 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR A A     +   ++ +   S  + +++ G++ H+P  R S+L   +  
Sbjct: 125 QDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSVFHVPTPRFSDLAQLVST 184

Query: 202 MHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +H   +      +         +  +  + K+A ++G E  GL    +E    +  + M 
Sbjct: 185 LHESQWLVAGTALDAPLAWGFEVASQFADKKVAWMMGNEAHGLNAAQRELCDVLMAIPMF 244

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++ NVS AA +AL+
Sbjct: 245 GQAESFNVSQAATLALW 261


>gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis F11]
          Length = 288

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++              + +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
 gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
          Length = 244

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S K+ Q+ AT   L     +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLKVKQVFATAEFLTEHQGELGHFEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V   A         A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNNA-------AIAVVEIPSIEIPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++   +   Q         +
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQSNLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHR-----TDFAAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNLRRQ 242


>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
 gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
          Length = 244

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + + K+  + AT      L   AN+   
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEHANVLAD 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +         + K+    + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  YECTEAALDDLTKVSTLVSNNA----AIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHK-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
          Length = 225

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 5/229 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V  A+     +I  L   K  L + ++ + +   F +K +P +    +V K  
Sbjct: 2   IIYGKQPVYYAIERHRERIKVLYLAKE-LDKKEYSSLMKMGFEIKRIPEKAAQSMV-KGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E + ++      ++    ++VL  + D  NIG+++RSA A     ++ +    
Sbjct: 60  NHQGFIAEISQVVPYASPFLKKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVISGIKD 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P+  A++  S+  AL     + I +    +          I  +      + +     K 
Sbjct: 120 PNLEAMIRTSSGAAL--DLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFAAKR 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+LG EG+GL  + Q++      + M     +LNV  A A+ +     
Sbjct: 178 VLVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM-ERMR 225


>gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 268

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ + S +++         +   GV  V   L +       LL     L  L  D    
Sbjct: 17  DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D +R+++ + VL+ VND  NIG
Sbjct: 75  VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +        + + G    +P+ +I      L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194

Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +   P   + +  +++AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERIR 265


>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 235

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 9/232 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGK 107
             ++G +T+  A+ +  R + ++           +           +    Q ++++   
Sbjct: 3   FIIWGRNTLEEAVKSG-RTLEKVYLQYGHYFEPSFLNWLKEKGIKFQWAKKQQLERLAKT 61

Query: 108 EAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+    +P+   + +      +      +VLD V +P N+GAI R+  +F   GI
Sbjct: 62  KK-HQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEPQNLGAIARTVESFGGVGI 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  ++ S   + +  K++SGAL H+   R+ +L +           +I       K +  
Sbjct: 121 LLPEKNSAPINEIALKASSGALFHLMVSRVPSL-NESLITFKKLGGSIYAVETGGKDIRN 179

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + LILG+EGKG+     + +  +  +   G   +LNVS AA +A++
Sbjct: 180 INFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231


>gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
 gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
          Length = 229

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L   R + L +V+D+VN PHN+ AI+RS  A     +     Y  S       +
Sbjct: 20  FRKIRELLEKRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAIS-YRSSIKTKQHTA 78

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A  +     ++  S +    +   S     +                   A+++G E KG
Sbjct: 79  AGASRWLKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKG 138

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +    A +  ++ M G++++LNVS AAA+ L+  Q   
Sbjct: 139 PSQEALGLADNFIYIPMMGMVESLNVSVAAALILFEAQRQR 179


>gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 250

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S +QK +   +       G   V          I        A A    + +  
Sbjct: 6   KIKLINSLSQK-KFRDETGLFVAEGTKLVLDLAQAFQCSILA------ATAAWLEEYSRL 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  +    + KI  +++    LA+   P  S   D+++   L + LD V DP N+G
Sbjct: 59  EADEIIEIDENELSKISNQKSPQGVLAVFAKPNHSWDKDSLKEK-LSLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I  +   + + +    ++  GAL  +    +S +   L   H     
Sbjct: 118 TIIRIADWFGITDIFCSTHSADAYNTKTVQATMGALARVKVHTVSLVDFLLSVAHEIP-- 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +       +++G EG G+  + ++  T    L          ++LN
Sbjct: 176 -VYGTFMDGENIYDKTLTKHGIIVMGNEGNGISDEIEKLVTERLLLPNFPLGQATSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V  A A+     +  
Sbjct: 235 VGVATALVCAEFRRR 249


>gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 8/245 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++  Q     L G   V   L +    I  L+AT N L     +  L 
Sbjct: 11  KIKFIKSLCLK-KYRLQENKFILEGAKNVKLLLESDYE-INILVATSNFLHEYT-NLLLN 67

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + +  +   +  +   AL  A +   T  A+   Q  +VLD+++DP N+G
Sbjct: 68  RNIEIFQVNEKELSALGTFQENN--AALAVATIPDNTPFAIGEHQYGLVLDNISDPGNLG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +   GII +       +  +      ++      ++           +    
Sbjct: 126 TIIRVADWYGIAGIICSTNTVELYNPKV---LHASMGSFVNTKVYYTDLPTYLAQTNLPI 182

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               +        Q +   +  +I+G E KG+             +   G  ++LN + A
Sbjct: 183 IGTFTKGKNLHDPQTVWPSEGLIIIGNEAKGISETLLPYIHQKISIPKYGHAESLNAALA 242

Query: 269 AAVAL 273
            A+  
Sbjct: 243 TAIVC 247


>gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           ND132]
 gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans ND132]
          Length = 253

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 12/247 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQT 100
            +   +++ G   V   L +  +K+  +   K           D       P K+V  + 
Sbjct: 8   KKDSKIYVVGNKPVKELLLDSPQKVDFVAFRKGRRDQAMEEILDLCRTAQVPYKSVSAKE 67

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D +      HQG+A   A L    L+            L++ LD V D  N+G + R+ 
Sbjct: 68  LDYM--FRGNHQGVAARCAALDYTPLEQLLEEALQAPLPLIVALDQVQDTGNVGVLARTV 125

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213
            A    G+I  + +     A   +S++GAL  +P  ++ NL +A++   ++ +       
Sbjct: 126 YALGGAGLIVCQHHGAYIGAGAVRSSAGALNKLPVAKVGNLANAMKDCVNYDYTLYCARL 185

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     +          LILG E KG+RP   + A    H+       +LNV+ A A+ +
Sbjct: 186 APDSDNVYTADLQTPAVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVAQAGAIIV 245

Query: 274 YITQNHF 280
                  
Sbjct: 246 SEFARRL 252


>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
 gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
          Length = 191

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++L++V+ PHN+ AILR+  A                +       S    ++  
Sbjct: 16  RQPDLTVLLENVHKPHNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGSHKWVYLRV 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                   +  K   +      L  D  +   +       A++LGAE  G+  +T   + 
Sbjct: 76  HPSIQEAISFLKEKGFRVYATALRED-ARDFREVDYTQPTAILLGAEKWGVSEETLALSH 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G++++LNVS AAAV L+  Q    K
Sbjct: 135 GAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 167


>gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 268

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ + S +++         +   GV  V   L +       LL     L  L  D    
Sbjct: 17  DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D +R+++ + VL+ VND  NIG
Sbjct: 75  VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +        + + G    +P+ +I      L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194

Query: 209 TIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +   P   + +  +++AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERIR 265


>gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937]
 gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937]
          Length = 362

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 118 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+               L    ++  ++ L+ V +PHN+G I+RS  
Sbjct: 178 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 236

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 237 HFGVKGLLV-NDAAQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 295

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 296 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 355

Query: 276 TQNH 279
               
Sbjct: 356 WWRQ 359


>gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
          Length = 366

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 122 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 181

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+               L    ++  ++ L+ V +PHN+G I+RS  
Sbjct: 182 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 241 HFGVKGLLV-NDAAQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 299

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 300 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 359

Query: 276 TQNH 279
               
Sbjct: 360 WWRQ 363


>gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 196

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 57/152 (37%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RS  AF    +      +   S     SAS       
Sbjct: 19  WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPSLSGKTSASARKWVDT 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +       S         S   KP+         A+I+G E  G+  +  +  
Sbjct: 79  VRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDVV 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAA+ L       
Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170


>gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10]
 gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 393

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 146 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 205

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 206 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 264

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 265 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 323

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 324 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 383

Query: 275 ITQNH 279
                
Sbjct: 384 EWWRQ 388


>gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 390

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 143 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 202

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 203 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 261

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 262 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 320

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 321 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 380

Query: 275 ITQNH 279
                
Sbjct: 381 EWWRQ 385


>gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola]
 gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola]
          Length = 388

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 260 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378

Query: 275 ITQNH 279
                
Sbjct: 379 EWWRQ 383


>gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516]
 gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F]
 gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1]
 gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10]
 gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
 gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F]
 gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           YPIII]
 gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004]
 gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 388

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 260 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378

Query: 275 ITQNH 279
                
Sbjct: 379 EWWRQ 383


>gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47]
          Length = 275

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 16/269 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----------SRKIFQLLATK 75
            +   +++ S  ++SR       + + G      A+              +    +    
Sbjct: 8   QNAAVRRIVSL-RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKPSESVGPPD 66

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQ 133
                +     +      + V  +   KI    +  + +A   AP       LD    + 
Sbjct: 67  MPEQAVARQHAIDSGVH-RWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLDRSSWND 125

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD V  P N+GA+ RSA A     ++ +   S   +    + + GA+  +P    
Sbjct: 126 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 185

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S        + + G++   +  +  +PL       K+A++LG+E  GL  +    +    
Sbjct: 186 SES-QMEAFLKTHGYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPV 244

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L M G + +LNVS +AA+  +      +
Sbjct: 245 ALPMAGHVDSLNVSVSAAIVAFEAVRQRS 273


>gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 70

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     + L++G+EG+G+   T+     +  + M G + +LN SNAAA+  Y    
Sbjct: 6   NYYDANMTGPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAYEVLK 65

Query: 279 HFA 281
              
Sbjct: 66  QRT 68


>gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 1/167 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSES 173
             +T       + + R + L + L+ V+  HN+ AI+RSA A  C  +           +
Sbjct: 1   MQQTRYQRIADVLSRRQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPENQKWLT 60

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
              +  +   LE   +  I +   A++  +          S       +       A+I+
Sbjct: 61  NNTSGGSKNWLETHLHKNIDDAATAMRARNPDIQILATHLSTDAVDFREIDYTKPTAIIV 120

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G E  G+  +  + A     + M G++++LNVS AAA+ L+  Q   
Sbjct: 121 GQEKTGISEQALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 285

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L + + + N    
Sbjct: 49  KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLEQHNQELN---G 103

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 104 FECIEASLDDLTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 159

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +             +
Sbjct: 160 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 219

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 220 EGESVHK-----TEFSAEGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 274

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 275 IILDNMRRQ 283


>gi|218131049|ref|ZP_03459853.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
 gi|217986753|gb|EEC53086.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
          Length = 253

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V   L     +   L+AT   L+         
Sbjct: 7   RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHRQLPVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + +      +   Q LA+   P        V    L + LD V DP N+G
Sbjct: 63  ---DITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVA-HSLCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +     + +    ++  G +  +     S        + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----GLIGSLKDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALN 264
            +  +    + +  +  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQPLSAHGLIVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 196

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 57/152 (37%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RS  AF    +      +   +     SAS       
Sbjct: 19  WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPALSGKTSASARKWVDT 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +       S         S   KP+         A+I+G E  G+  +  +  
Sbjct: 79  VRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDVV 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAA+ L       
Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170


>gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST]
 gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST]
          Length = 378

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 28/289 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
              Y  L+ N   Y+ +       ++  +   L L G   +        R    + +   
Sbjct: 82  KLRYTILQSNDARYRDLMMLIGSRKNRERERMLVLEGRRLIMDGYQAGLRLEAIVTSDVK 141

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-----QGLALETAPLLSPTLDAVRN 131
            LA L + A L    P+  V  QT+ +              G     + L++      + 
Sbjct: 142 LLAELTFRAKL-KACPIFLVKRQTMMEWSSLTTSPGLIGIFGEPSNMSELVTRNATGSKR 200

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +V D++ +P+N+G+I+RS  A S   +I  K  +        +  +GA   +P   
Sbjct: 201 LPVTVVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLRGGAGAHFRVPIYG 260

Query: 192 ISNLTDALQK----------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                   +            +                       D + L++G E  G+ 
Sbjct: 261 PIEAYQLPEHVRAGSIFVVADNKKPTDERNGFRWKHYDRIDYGSADHVVLVIGGETYGVS 320

Query: 242 PKTQETATS------------MAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   T             +AH+ +   +++LN ++A +V LY  + 
Sbjct: 321 DDIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILYEMRR 369


>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
 gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
          Length = 244

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATAEFLEQHSHELN---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNNA----AIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +             +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        +    L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFSADGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
          Length = 260

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 12/256 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
            FN K ++  + E L L+G + V   L N   KI ++   K                  +
Sbjct: 8   QFNNKHQNKHKKERLCLFGYNGVYEGLINN-LKIKKVYLHKE--DHPLLKLIKQKGIEYE 64

Query: 95  TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               +  D        HQG   E                       +++VLD ++DP N 
Sbjct: 65  LHTIKWFDNQYRDLPNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNF 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++ +     
Sbjct: 125 GGILRSCLAANVLGVIFKKDNQVSINNTVIKTSLGACFYLNLIEVANLSYAIKDLQEKYG 184

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265
                 +   +         +K  LI+G E KG+  +  + A     + M    I++LNV
Sbjct: 185 FWSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNV 244

Query: 266 SNAAAVALYITQNHFA 281
           S A  + L+  +    
Sbjct: 245 SVATGIMLFNMKQKIK 260


>gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 267

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 4/239 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  AL    R    LL  K     +  D    
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALAAGFRMRSMLLTAK--WLGVMADVIEG 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V P   +++ G       LA      L    + +  ++ + VL+ + D  N+G
Sbjct: 75  TDAPVHLVDPVLAERVTGYHVHRGALASMERKPLPGAPEVLAGARRVAVLEGLVDHTNLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K++ GA+  +PY R+    DAL  +   GF+
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAGFE 194

Query: 209 TIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            + L+    +       +   K AL+LGAEG GL PK    A     + M   I +LNV
Sbjct: 195 LLALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNV 253


>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 254

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T   L       + P
Sbjct: 6   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGTAAMLR----AVSTP 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V  +P         + +         A    P         L ++LD V DP N+G
Sbjct: 59  HDAEVVELPES---FDFKRISTQTTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQDPGNVG 115

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWG 206
            ILR+A  F    +      +   S  + +++ GAL  +    + N  D     +     
Sbjct: 116 TILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIP 175

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIK 261
                L   S          +   L+LG+EG+G+ P+     T    +        G  +
Sbjct: 176 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 235

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 236 SLNVAIATAILCSEWRRR 253


>gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
 gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
          Length = 202

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 68/175 (38%)

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
              H     E        + A R   L +V+++++DPHN+ AI+RS  AF    +     
Sbjct: 4   PKSHPRPRTEAREKRIREVLARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLLYT 63

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +     SAS       +   S+   A               S S +PL +     
Sbjct: 64  SEAFPALGRRASASARKWVGRHHHTSSEALAGHLRDHGMRILSTSCSPSARPLPEWEFTS 123

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A++LG E +G+ P  +        + M G++++ NVS AAA+ LY       +
Sbjct: 124 PTAIVLGNEHRGVDPALRSHIDGELFIPMQGMVQSFNVSVAAAIILYEAWRQRNR 178


>gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 233

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 93/256 (36%), Gaps = 26/256 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ +K       K ++  Q +   +YG   V  AL      + +++ T   +     
Sbjct: 4   SKDNKKFKSWMKLKTK-KYRDQMDQYIVYGQTFVDLALKKG--VVEEIVTTNPNIEGTLI 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     V                                         ++VLD V +
Sbjct: 61  SEVLMKELKVTETSYDVFAVCKKVSTPIVSNQ-------------------ILVLDDVQN 101

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA+AF+   ++ +   +   +    +++ GA   +  + I  L        
Sbjct: 102 PDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGA---LFDLYIERLDIHEFITL 158

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                     +D+ K   +  K     L+LG EG+GLR KT E      ++     +++L
Sbjct: 159 KKQNGYQVFGADAHKSELEPDKTKPFILVLGNEGQGLRSKTIELLDGRLNIETH-HVESL 217

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A ++ +Y     
Sbjct: 218 NVTVAGSILMYEWSKQ 233


>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 257

 Score = 96.8 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 7/252 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
            R  K++   +++ +         + GV  ++AAL   +  +  L+              
Sbjct: 4   RRRLKELARLHRR-KDREALGQYLVEGVRLLAAALEAQAPLVEVLVTATARRRPEVQALL 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV  V  Q + ++   E     LA   A +       +   + ++ LD + DP N
Sbjct: 63  ARVAVPVAEVSEQEMARLSEVETSQGVLA--VARMQWQPEAHLLRCRRILALDGLQDPGN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ILR+A  F  + ++         +  + ++A G+   +  +R   L D L ++ + G
Sbjct: 121 AGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGALPDLLAQLQANG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKAL 263
           F   G   +           +   L+LG+E  GL+P  +E  T+   +         ++L
Sbjct: 181 FTCYGADLEGTPASRW-QPREPAVLVLGSEAHGLQPAVRERLTARVTVPGSPRRQATESL 239

Query: 264 NVSNAAAVALYI 275
           NV+ AA V LY 
Sbjct: 240 NVAMAATVLLYE 251


>gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
          Length = 227

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       ++ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGILARVELPIAISLKEIKKAQKLLVLCSITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             ++      ++ +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSPKEYLALKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223


>gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans']
 gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 367

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    ++   R          +      V   
Sbjct: 121 RRQRAEETRVYGENACQALFRNRPDAIVRAWFEQSVTPRFRDALRWMAANRKAYHVVEYD 180

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G E  H G+            D        +    ++ L+ V++PHN+GA+LRS
Sbjct: 181 ELAKASGTE-HHGGVCFLIKKRAGLDADGYLASAAAQQQDCVLALEQVSNPHNLGAMLRS 239

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F  + +      +  +S    ++A G  EH+  I+  ++   LQ+    G+  + L+
Sbjct: 240 CAHFGVNSV-MVSDSALLDSGAAVRTAEGGAEHVKAIKCDDVLQDLQRFQRAGYTVVTLA 298

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +S   L       +  L+LG EG  L       A     ++  G + +LNVS +A + L
Sbjct: 299 GNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQADIAVTINGSGRVPSLNVSVSAGILL 358

Query: 274 YITQNH 279
                 
Sbjct: 359 AEWWRQ 364


>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix
           jacchus]
          Length = 350

 Score = 96.4 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 28/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100
                L+G+     AL    R + +LL                        PV     Q 
Sbjct: 47  SRQELLFGLSPCLLALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRRQK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D +   + VHQG+ +E +PL                  QL +VLD + DP N GA+LR 
Sbjct: 107 LDAMCRYQ-VHQGVCMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRC 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D IIT+++ S   + V++K+++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 214 SDSKKPLEQ-----------EIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
                 + Q            + +    L+LG EG GL  + Q +   +  +     +P 
Sbjct: 226 GCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNVS  A + L+   +   
Sbjct: 286 GFESLNVSVVAGILLHSICSQRK 308


>gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 212

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +++D+VN  HN+ AI+RS      D I          +   A + +     + 
Sbjct: 4   HRQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEIHAVSYRKSIYAKQNAAAGASKWLTLT 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                        +           AL++GAE  G+  +  + A
Sbjct: 64  LHPDIASAYRKVSACGMQILVATGKEG-SRDFRAIDYTVPTALVMGAEWDGISEEAIKGA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS A AV L+  Q   A+
Sbjct: 123 DHAITVPMFGMVESLNVSVATAVILFEAQRQRAE 156


>gi|317477065|ref|ZP_07936307.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906858|gb|EFV28570.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 253

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V   L     +   L+AT   L+         
Sbjct: 7   RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATVEWLSAHRQLPVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + +      +   Q LA+   P        V    L + LD V DP N+G
Sbjct: 63  ---DITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVA-HSLCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +     + +    ++  G +  +     S        + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----GLIGSLKDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALN 264
            +  +    + +  +  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQPLSAHGLIVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 232

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D+VN PHN+ AI+RS  A     +        S       +A        +
Sbjct: 17  RQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLYAVS-SKKSIHTTQNAAAGAGRWTNLH 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R    T   +            +++  +           A++LGAE +G+  +  + A 
Sbjct: 76  LRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIVLGAEWEGVSAEAIQAAD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS AAA+ L+  +   +
Sbjct: 136 MAITIPMYGMVESLNVSVAAALILFEAERQRS 167


>gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 282

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVG 106
           + + G   V  AL    + +  +  ++ A  R              V  V  +       
Sbjct: 41  VLVEGPQAVREALRFCGKDLLDVYISEEAWERYPELVQEAKAATRWVHQVTNEV----SK 96

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             +                     +   ++VL    DP N G ++R A A   D +    
Sbjct: 97  AISTDSQGITAVVKDFRTDGLPKVDWDFIVVLAQTQDPGNAGTMIRIADAAGADAVFICS 156

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSKKP 219
                 S  + +S++G++ H+P I    L + L+   + G Q +G          D+   
Sbjct: 157 GSVDVTSPKVVRSSAGSVFHLPSIVNVGLPEVLEWARARGMQLLGADGNGSVDLFDAADC 216

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      +  A I G E  G              + + G  ++LNVS AAAV L+ +   
Sbjct: 217 MVDVDLAEPTAWIFGNEAHGFAQFDTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKA 276

Query: 280 F 280
            
Sbjct: 277 R 277


>gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 364

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 82/255 (32%), Gaps = 9/255 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88
           K      Q  +   +     +YG +   A   N    I +    ++   R          
Sbjct: 109 KSQIDPEQLRKQRQEETR--IYGENACQAMFKNRPDAIVRAWFLQSVTPRFRDALKWMAA 166

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDP 144
           +      V  + + K  G E  H G+          +    L     +  ++ L+ V +P
Sbjct: 167 NRKAYHVVDDEELSKASGTE-HHGGVCFIIKKRGGMSADAYLQQAAGNDCVLALEDVGNP 225

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G I+RS   F   G+I          A +  +  GA                +   +
Sbjct: 226 HNLGGIMRSCAHFGIKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRKA 285

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   S    + L +     K+ L+LG E  GL   T +      ++   G +++LN
Sbjct: 286 GYTIVTTSSHKGSQDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLN 345

Query: 265 VSNAAAVALYITQNH 279
           VS A  + L      
Sbjct: 346 VSVATGIMLAQWWQQ 360


>gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 345

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K+ G E  H G+          T+        +   ++ L+ + +PHN+G ++RS  
Sbjct: 161 ELAKVSGTE-HHGGVCFLIKKRNGMTVKQWVKQAADQDCVLALEDIANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFGATLPEKMVLVLGREYDFLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
 gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
          Length = 319

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 15/240 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95
             ++     L G + V  AL    P+  ++ +        +               P+  
Sbjct: 67  QRAEEAPELLLGRNPVVEALRAEIPATALYVVTGDARTATDERITEALHLANDRGLPLLE 126

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIG 148
           V     D++    A+HQG+ L+  P      D             L++ +D V DP N+G
Sbjct: 127 VGKAEFDRMS-NGALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNLG 185

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G++  +R S   +A   ++++GA   +P  R  NL  AL      G  
Sbjct: 186 AVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGLM 245

Query: 209 TIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           T+GL+ D    L       D +AL++GAEG GL    +E    +  + +    ++LNVS 
Sbjct: 246 TVGLAGDGDVDLHDFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVSV 305


>gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 265

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 97/248 (39%), Gaps = 6/248 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLP 88
            K+    +QK ++  +       G+ TVS  L   PS +    L        L       
Sbjct: 14  IKRFARLHQK-KYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERY 72

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  +  + + ++         + +           A     L++ LD V DP N+G
Sbjct: 73  RE-KLFLLEQEEMRRLAATTTSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGNVG 131

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A  F    +I+ +  +   +    +S++G+L  +      +L   L ++ + GF 
Sbjct: 132 TIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSADDLGVELGRLQARGFH 191

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALNV 265
            +  S         ++   ++ L++G E  G+    Q+ + SM  +        +++LN 
Sbjct: 192 IVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHGPASPHVESLNA 251

Query: 266 SNAAAVAL 273
           + +AA+ +
Sbjct: 252 AVSAAILI 259


>gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 327

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
                + G + V   + +    SR         +        A       +  V    +D
Sbjct: 75  EGYELVSGRNPVVEIVASGIPFSRVFVVGSLANDERVATVLRAATESGAELIEVTRFELD 134

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+   + VHQG+ALE  P     ++             L++ LD V DPHN+GA +RSA 
Sbjct: 135 KMTDGQ-VHQGIALEIPPYEYVDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSAS 193

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  DG++  +R S   +A + K ++GA   +P  R +NL  AL+ + + G+  +GL   
Sbjct: 194 AFRADGVLIPERRSAGVNATVWKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGG 253

Query: 216 SKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               ++     D  + ++ G+EGKGL    ++T   +A + +   +++LN + A  +ALY
Sbjct: 254 GDATVDTLDMADVPLVIVTGSEGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALY 313

Query: 275 IT---QNHF 280
                + +F
Sbjct: 314 QIDVKRRNF 322


>gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 252

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 28/254 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K  +S + K +   +       G   V+  L        ++      + ++ +  +  
Sbjct: 20  KIKLYRSLDTK-KGREKANLFIAEGPKVVNDLLQAGFEA-EEIFEDIEDIKKITFLQHPQ 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  +                    +   L         + +L + LD V DP N+G
Sbjct: 78  SMLGVFKL-------------------KQVPNLQEDVFTFFPSQKLSLALDGVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +  + ++  G++  +     S L             
Sbjct: 119 TIIRIADWFGIENIYCSPNTVDCWNPKVVQATMGSIARVNIHYTSLLEFVDS---LPLNY 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            I  +      + Q+   +   +++G EG G+  + ++      ++          ++LN
Sbjct: 176 PIYATLLDGNNIYQQDLTEYGVIVMGNEGNGISTELRQKINHKLYIPNYPADRSSAESLN 235

Query: 265 VSNAAAVALYITQN 278
           V+ A A+     + 
Sbjct: 236 VAIATAIVCAEFRR 249


>gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 230

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+NI AI+R+A A     +      +     +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNISAIIRTADAVGIHQVHAVWPKNSKMRTLGGTSAGARNWVDVV 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                +   S++     +       A+++G E  G+  +    A 
Sbjct: 76  THDNTPDAFAALKAKGMQILVTNLSETAVDFREIDYTKPTAIVMGQEKTGISQQALALAD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 136 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 166


>gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
 gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
          Length = 301

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 35/265 (13%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQL--------LATKNALAR------------------ 80
                   + +  ALN     +  L           K +  +                  
Sbjct: 34  GLFIAESPNVIQRALNAGYEPVSILIEKKQLDRWMQKESAMKSAMESMSDQIDLPAGNNG 93

Query: 81  ------LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                 L+    +    PV T   + + K+ G   +   L      +L        ++  
Sbjct: 94  DPADVVLEHIMAIGGDIPVYTAEYEVLKKLTGFALIRGLLCAMRRKVLPSPEGVCSDAHR 153

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL++V +P N+GAI RSA A   D ++ T   S       A+ + G +  IP+  I +
Sbjct: 154 IAVLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGD 213

Query: 195 LTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +T  +  +H+ GF+       +        +  + +K+A+ILG EG+GL+  T   +   
Sbjct: 214 MTAGMDILHAMGFKTASMALRNDTIDINDPRLKEVEKLAVILGTEGEGLKTSTIYASDFT 273

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M   + +LNV+ A+AVA +  
Sbjct: 274 IKIPMFHGVDSLNVATASAVAFWEL 298


>gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 368

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 14/250 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------LMVLDHVNDPHNIGA 149
            + K  G E  H G+            +     Q           ++ L+ V +PHN+G 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+   F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  
Sbjct: 237 IMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A 
Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGKVESLNVSVAT 355

Query: 270 AVALYITQNH 279
            + L      
Sbjct: 356 GILLSEWWRQ 365


>gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
 gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
          Length = 371

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 125 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 184

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 185 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAQDCVLALEDVGNPHNLGGIMRTC 243

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 244 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 302

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 303 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 362

Query: 275 ITQNH 279
                
Sbjct: 363 EWWRQ 367


>gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
 gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
          Length = 358

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 112 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 171

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 172 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 230

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 231 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 289

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 290 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 349

Query: 275 ITQNH 279
                
Sbjct: 350 EWWRQ 354


>gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 24/272 (8%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++      +++   +     + G  +V  A+      +  L    +       
Sbjct: 9   DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68

Query: 84  DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130
             +  L             V       + +I         +    +         L    
Sbjct: 69  IISSTLEKIVETSQDATIYVHYCTGDVMHRISPDAQGIVAVGNAESMHAGADDVELGKNG 128

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
               +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P  
Sbjct: 129 RGPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188

Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241
                   T             +  + + K      +  D        A++ G E +GL 
Sbjct: 189 AMSTDEFFTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|86141309|ref|ZP_01059855.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831868|gb|EAQ50323.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 237

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 92/252 (36%), Gaps = 23/252 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++  Q     + G+  +   L++    +  L A +             
Sbjct: 6   QIKLITSLAQK-KYRQQNALFVVEGIKGIREFLDSSY-VLHSLYALEGVF---------- 53

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V P  + KI   +   + LAL    +    L+     QL++  D V DP N+G
Sbjct: 54  EDQDTTEVSPAELKKISFLKTPQKALALF--EIPKQRLEIKSGFQLVL--DEVRDPGNLG 109

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R    +  + +I +++     +  + ++  G+L  +  +         +   S    
Sbjct: 110 TLIRLCDWYGIEHLICSEQTVDCFNPKVVQATMGSLTRVNLVYTDL-----ETYLSKQKL 164

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVS 266
            +  +    + + +    ++  L+LG E  G+     E       +   G    ++LNV+
Sbjct: 165 PVYGAFMDGENVYRSQLPEEAILVLGNEANGVSAAVSEKIQQKISIPQFGSSTTESLNVA 224

Query: 267 NAAAVALYITQN 278
            A A+ +   + 
Sbjct: 225 IAGAILVSEFKR 236


>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 244

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELA---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +         + K     + +       A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 63  YECIEASLDDLTKASTLVSNNA----AIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   Q         +
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEQANLPIYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TTFSAQGILLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 264

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 94/254 (37%), Gaps = 6/254 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q +    +    +  G H  +AAL         +     +   L  
Sbjct: 11  SRDNAFLKDLRRLAQDNTGYRKQGRFWAEGEHLGAAALARHVTPAIGVF--SESFWPLAP 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       +P      I G E+  Q           P + A++     ++LD V D
Sbjct: 69  AKYAQAAIKSIVIPDSLFAAISGLESPAQMG----FVFDLPLVAALQPVMASVILDRVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    +I  K  +   S  + ++  GA   +  I    L D      
Sbjct: 125 AGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGMGAHWGLQLIEGVALADLALLAV 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                +    S   + +  +      A  LG EG+G+  + +  A     +  PG  ++L
Sbjct: 185 PIVVTSSHRGSYLHQAIANQALPMPCAWALGHEGQGVSAELEALARLHVRIAQPGGEESL 244

Query: 264 NVSNAAAVALYITQ 277
           NV+ AAA+ L+ + 
Sbjct: 245 NVAAAAAICLHASA 258


>gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
 gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
          Length = 365

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 237 AHFGINGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 296 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLA 355

Query: 275 ITQNH 279
                
Sbjct: 356 EWWRQ 360


>gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 332

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 16/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----D 84
             K+++    K R      +  L G + V+ A    S  I ++    +A +         
Sbjct: 65  RAKQLEKL--KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVR 121

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137
                  PV       +D +    A HQG+A+E       T   +         + LL+ 
Sbjct: 122 RAALLGAPVLETTRLDLDALTDSAA-HQGVAIEVPAYEYTTARDLLDRARSLERTPLLVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GA+LRSA AF  DG+I  +R S   +A + K ++GA   +   R +NL  
Sbjct: 181 LDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256
           AL+++   G   +GL       +E     D  + L+ GAEG GL    +ET   +A + +
Sbjct: 241 ALEQVKREGCFVVGLDGSGSTDIEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPI 300

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              +++LN + A  ++LY       +
Sbjct: 301 SRSVESLNAAVATGISLYEVDRLRRR 326


>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 235

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L++V+ PHN+ A++R+  A     + T   +          +          
Sbjct: 16  RQTDLTVCLENVHKPHNVSAVVRTCDAVGIHRVHTV--WEKKYQFRRGTAMGSQQWVRQT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +         +   SD+             A++ G E  G   + +  A 
Sbjct: 74  NHDNINDAMAELKGQGMQVLVTHLSDTAVDFRDIDYTKPTAILFGQEKYGASDEAKAIAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS AAA+ LY  Q    
Sbjct: 134 QDIVIPMMGMVQSLNVSVAAALVLYEAQRQRT 165


>gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 298

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 33/273 (12%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + +   Q E   + G   V  AL    R I  +  T+ AL R      L       T   
Sbjct: 21  RRKMRVQYEQAIVEGPQGVREALLCYERGIRDVYVTQEALERHPDIDALLRRVDPYTHIL 80

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                           A+   P      D   + +L++      DP N+G I+R A A  
Sbjct: 81  PNELCSSVAPNSQGIFAVIAIPDEEDIRDIFAHGKLVVCALESVDPGNVGTIIRCADACG 140

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +    + +  + +S++G+  HIP +   ++ D +      GFQ +      + 
Sbjct: 141 ADAVILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAREAGFQILIADGRGEY 200

Query: 219 PLEQ---------------------------------EIKNDKIALILGAEGKGLRPKTQ 245
            L Q                                          ++G E  G   +  
Sbjct: 201 DLGQLADQALLESEGAQCGAAAQAGSAESAAEPGSAAIDLRRPTLWMVGNEAHGFTDEQY 260

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A  +  + M G  ++LNV+ A ++ L+ +  
Sbjct: 261 GYADGLVRIPMWGASESLNVAMATSICLFSSAR 293


>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
 gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
          Length = 288

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 24/261 (9%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-----DANLPHPF 91
            ++           L+GV     AL    R   +L   +   +R        +       
Sbjct: 19  RERLSKEEHRNYETLFGVSPCLLALTQGRRNAHRLFVKEGEASRRASVRQVCEEAHRQGV 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDP 144
           P++ V    ++K+     VHQGL L+ + L   T D          +  L +VLD V DP
Sbjct: 79  PIQRVSKNDLNKMCS-GGVHQGLCLQASCLGFLTDDKTSKPPRDSSHIPLWLVLDGVQDP 137

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILRSA     D + ++ R S   + V++K++SG +E +      +LTD L+   +
Sbjct: 138 MNLGAILRSAYFLGVDRVASSLRNSCPLTPVVSKASSGVMEVMRVYGYDSLTDMLKVKLA 197

Query: 205 WGFQTI-------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--- 254
            G+Q I         +        +        L++G EG+GL  + +     M  +   
Sbjct: 198 QGWQVIGTVGAEAENAHVPVMKCSKFQMTKPTLLLMGGEGEGLSRELRLQCEVMLTIIPR 257

Query: 255 -HMPGIIKALNVSNAAAVALY 274
             +   +++LNVS A  + L+
Sbjct: 258 RDLHPGVESLNVSVATGILLH 278


>gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
          Length = 290

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 24/270 (8%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++  ++    +   +     + G  +V   L+     +  L     +       
Sbjct: 10  NPRAERVRRVSELADRKGRKRSGRFMVEGPQSVRELLSWHPDIVEDLYVEVVSAEPDAAF 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133
                       +     V  V    +  +    + V     +      +          
Sbjct: 70  ITPTVAQMAGKAMQAGAYVHKVTHAVMQHMSSDAQGVLAVADMRAFLDSAVIDGDFDERT 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++     V DP N G ++RSA A  C G++         +  + +S +G+L H+P + + 
Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG 189

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----------ILGAEGKGLRPK 243
              +        G                E   D +A+          + G E +GL   
Sbjct: 190 TD-EYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQD 248

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E    +  + + G  ++LN+  +AAV L
Sbjct: 249 VLERVDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 228

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A+LR+A A     +                ++        
Sbjct: 15  NRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEV-HAVWSELEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S                    SD+              +I+G E  G+ P+    A
Sbjct: 74  RVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGNERDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS AAA+ +Y  Q    +
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTE 167


>gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 244

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + + K+  + AT      L   AN+   
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEF---LAEHANVLAG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                     + K+    + +       A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 63  NECTEAALDDLTKVSTLVSNNA----AIAVVEIPRIEVPKAQGLMIGLDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 332

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 26/250 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + V  AL      +   +      +   R            +       +D+I  
Sbjct: 69  LVIGRNAVLEALRVGVPSMQLYIATRIEHDDRTREIIKLAGAQSLHLLEADRLEMDRIA- 127

Query: 107 KEAVHQGLALETAPLLSPTLD---------------------AVRNSQLLMVLDHVNDPH 145
           + + HQG+ L+  P    +L                       +    L + LD V DP 
Sbjct: 128 RSSNHQGVVLKVQPYQYSSLAELADIAERKAKAMDVVNSPSARINARPLFIALDGVTDPQ 187

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA AF  +G+I  +R S S +A   K ++GA  HIP  R+ NLT A++ M   
Sbjct: 188 NLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHIPVARVVNLTKAIESMRER 247

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G+ T+GL     K + +     D + ++LG+EGKGL    +E+  ++A + +  ++++LN
Sbjct: 248 GYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKGLSRLVRESCDAIAGIPITSMVESLN 307

Query: 265 VSNAAAVALY 274
            S AA ++LY
Sbjct: 308 ASVAAGISLY 317


>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 244

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLGQHSKELNGFES 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V   A         A +  P L       L++ LD V+DP N+G I
Sbjct: 66  VEASLDDLTKASTLVSNNA-------AIAVVEIPELKVPEAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +             +
Sbjct: 119 IRVADWYGIQHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEDANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        +    L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFSADGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568]
 gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
          Length = 366

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 122 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 181

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+GAI+RS  
Sbjct: 182 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLKEAPAKDCVLALEEVGNPHNLGAIVRSCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 241 HFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSH 299

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL Q     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 300 KGTPLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLAD 359

Query: 276 TQNH 279
               
Sbjct: 360 WWRQ 363


>gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 248

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 33/280 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+                     +  Y+++    Q +R   + +   + G   V   
Sbjct: 1   MKLITSP------------------ANPTYRQLLRLLQ-ARGIRKYQQALVSGEKIVREL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + S ++  L+++         +    +      + P+   ++         + +  A 
Sbjct: 42  LASGSPEVLALVSSSRH-----ENIEGLNAVSRLVLEPELFRQLDVCGTDFPLVLVRCAQ 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +         + + +         N+G++LRS+VAF    I+  ++ +        +++
Sbjct: 97  PVEWAGSLPVGTCVALAFQDP---ENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRAS 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GA+ H    R           H      I   S   KPL + + +D   L+ G EG G+
Sbjct: 154 AGAVFH---CRFFAGPRLEDIFHLPYPGQIVSLSAEGKPLAETVFSDPTMLVPGIEGAGI 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + +E +     + M   +++LN + A ++ LY      
Sbjct: 211 PARWREQS---VSIPMDAGVESLNAAVATSIVLYHMAQRR 247


>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 263

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 8/248 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPH 89
           K+     + ++       F  G  TVS  L        +  LL  +   A   +  +   
Sbjct: 13  KLYGKLHQKKYRDSEGLFFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGSYSG 72

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              V T+  +   ++           +      L    +    S L++ LD V DP N G
Sbjct: 73  R--VFTLTEKECARLSQTATPSGIFGVFRQQSALPFEPERTDGSSLIVALDDVQDPGNAG 130

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+A  F  D +I +   +   +A   +S++G++  +P+  + +L   L ++   G+ 
Sbjct: 131 TILRTAAWFGADAMICSAGTADRYNAKAVRSSAGSIYALPHYGVDSLETELLRLAGRGYA 190

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
            I  S   +   E     +K  L++G E  G+    Q  A  +  +   G    +++LN 
Sbjct: 191 VIASSLAGQDFREFTSWPEKQVLVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLNA 250

Query: 266 SNAAAVAL 273
           S +AA+ +
Sbjct: 251 SVSAAILM 258


>gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 368

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 87/250 (34%), Gaps = 14/250 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------LMVLDHVNDPHNIGA 149
            + K  G E  H G+            +     Q           ++ L+ V +PHN+G 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+   F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  
Sbjct: 237 IMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A 
Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVAT 355

Query: 270 AVALYITQNH 279
            + L      
Sbjct: 356 GILLSEWWRQ 365


>gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 233

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 6/234 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+ G ++   A+ +        L       + +        F V+ +    + K+     
Sbjct: 5   FIGGKNSTLDAIESKLNLKRIYL-----SKKENLKYFKNTNFKVEILSNLELSKLTNNAN 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
               +A                 ++++VLDH+ D +N+GAI+RSA A     I+  K   
Sbjct: 60  HQGFVAELDFTYSDINKIYESKPKIVLVLDHIMDTYNLGAIIRSANAAGIKDIVMPKENC 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              ++ + K +SG    I + ++S+L   L K+    +   G     +         N  
Sbjct: 120 ADITSNVLKVSSGGFIGINFYKVSSLNAFLNKLKKHSYWIYGSMLDKNSTSYYSAKYNFP 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +A ILG E KG+            H+   G +++LNVS AA + L+  ++   +
Sbjct: 180 MAFILGNEEKGISKSALVEVDEKIHIPQSGSVESLNVSVAAGILLFDIKHKVNE 233


>gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
          Length = 239

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 10/233 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N  + I ++   +        +    +    + V  +   +        
Sbjct: 5   FGKKALLDAI-NNKQIISKVYLLEKNY--ELINLINKNQISYEVVNERWFKQFDHSLNHQ 61

Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                        T       L   + + L+++LD + DP N GAI+R+A AF  DGII 
Sbjct: 62  NIAFKLVKKSFQKTSLESFLKLIKKQENALILMLDEIEDPRNFGAIIRTANAFGVDGIIY 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K +  S + ++ K++ GA+ +I  I +SNL++A++ + + GF     S    +  E+  
Sbjct: 122 KKYHQASINDLVIKTSMGAINYIHMIEVSNLSNAIKNLQNEGFWVYATSLLKSQSYEKVD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +K   I+G E KG+ P   + A     + M G +++LNV  A  + L   +
Sbjct: 182 YANKSVFIVGNESKGVSPLILKNADQSVRIDMFGDVQSLNVGVATGIILAHYR 234


>gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
          Length = 307

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 16/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 89  H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222

Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               +         +   +               K+AL+ GAE  GL+  T   A  +  
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   + +LNV+ A AVA +    
Sbjct: 283 IEMAHGVDSLNVAGACAVACWAIAQ 307


>gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822]
 gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis]
          Length = 274

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K +               + L GVH   A L +    +  L     A      
Sbjct: 23  SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 78

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +         + G  +V  G  +             R  +  ++ D + D
Sbjct: 79  IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+  A     ++     + + S  + +S  GA      + I    D    + 
Sbjct: 139 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 195

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262
                 +  +      L       + A + G EG+G+       A    H+      +++
Sbjct: 196 RLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 255

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV  AAA+ L+  +   
Sbjct: 256 LNVGAAAAICLFEQRRQR 273


>gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS]
          Length = 257

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K +               + L GVH   A L +    +  L     A      
Sbjct: 6   SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +         + G  +V  G  +             R  +  ++ D + D
Sbjct: 62  IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+  A     ++     + + S  + +S  GA      + I    D    + 
Sbjct: 122 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262
                 +  +      L       + A + G EG+G+       A    H+      +++
Sbjct: 179 RLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV  AAA+ L+  +   
Sbjct: 239 LNVGAAAAICLFEQRRQR 256


>gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 264

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 16/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----D 84
             K+++    K R      +  L G + V+ A    S  I ++    +A +         
Sbjct: 3   RAKQLEKI--KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVR 59

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137
                  PV       +D +    A HQG+A+E       T   +         + LL+ 
Sbjct: 60  RAALLGAPVLETTRLDLDALTDSAA-HQGVAIEVPAYEYTTARDLLERARALGRTPLLVA 118

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHN+GA+LRSA AF  DG+I  +R S   +A + K ++GA   +   R +NL  
Sbjct: 119 LDQVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVR 178

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHM 256
           AL+++   G   +GL       +E     D  + L+ GAEG GL    +ET   +  + +
Sbjct: 179 ALEQLKKEGCFVVGLDGSGSTAVEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPI 238

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              +++LN + A  ++LY       +
Sbjct: 239 SRSVESLNAAVATGISLYEVDRLRRR 264


>gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 345

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDGA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 248

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 15/257 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARL 81
            +N+  YK ++   +K +H  + +   +     +  A      +I  L  +++A    + 
Sbjct: 5   SKNNNTYKFLKGLLEK-KHRQESKLFMVEKPVVIEEA---EGFEIKYLALSESAYRSNKF 60

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +          +          +              A       D  R S   + LD +
Sbjct: 61  EKIIKNLDQDKIFVFSDNIFKNLCDAVTSPG----IIAYYSYLRRDFDRTSGKFLYLDDI 116

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+RSA A   DG+I +       +    +S+  ++  +P   ++      + 
Sbjct: 117 REPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFRLPIYFMAR-----ED 171

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    F  +  S ++          DK  +++G E KG+       A    ++ +   + 
Sbjct: 172 LVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMTHAKGFLNIPISDKVD 231

Query: 262 ALNVSNAAAVALYITQN 278
           +LN + AA++ +Y    
Sbjct: 232 SLNANVAASIIIYEMMK 248


>gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Monodelphis domestica]
          Length = 425

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 27/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTI 101
           P    L+G+   + AL    R + +LL  K                    PV+ +  + +
Sbjct: 117 PRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAEALGIPVQLMRRREL 176

Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           D +           E              +   +   + +L ++L+ + DP N+GA+LRS
Sbjct: 177 DALCRGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGAVLRS 236

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--- 210
           A     D +IT++R S   + V++K+++G +E +      +L   L+     G+      
Sbjct: 237 AHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLVAGTV 296

Query: 211 --------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPG 258
                     S        + + +    L+LG EG GL  + +     +  +     +P 
Sbjct: 297 GCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTILPGRELPP 356

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LNVS AA + L+   +   
Sbjct: 357 EVESLNVSVAAGILLHSIISQRK 379


>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 245

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N   ++ Q+ AT      L  + +  + 
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LVNSELQVKQIFATGEF---LTANQSQLND 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDDLTKASTLVSNNA----AIAVVEIPSVKVPQAQGLIIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +K  +   +     +  G+   +   ++   +   Q         +
Sbjct: 119 IRVADWYGIKHIVASKDCADPYNPKTISATMGSFGRVTVSQLDLPSYLEQASIPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        N +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESIHK-----TEFNAEGILLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNLRRQ 242


>gi|88857415|ref|ZP_01132058.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820612|gb|EAR30424.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
          Length = 261

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 94/248 (37%), Gaps = 14/248 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++ NQK ++  Q +   + G   V   L +    + Q+ AT + +A         H 
Sbjct: 26  KLIRALNQK-KYRKQHQLFLVQGEKNVVELLGSDFE-VDQIFATHSFIAEHSDALRNQH- 82

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V     + ++K     + +  LA+      +          +++ LD V+DP N+G I
Sbjct: 83  --VIETDEEQLEKASTLISNNAALAIVKMKQKAVP----EPKGMMLALDGVSDPGNLGTI 136

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +   ++   +             +
Sbjct: 137 IRVADWYGITHIIASDDCADPYNPKTISATMGSFSRVHVSQVDLPSYLNNAALPIYGAYL 196

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G  +  +          +  +++G+E  G+RP   +  T    +   G  ++LNV+ A  
Sbjct: 197 GGENVHQ-----VSFAKEGIILMGSESHGIRPLAGQHVTQKITIPAFGQAESLNVAMATG 251

Query: 271 VALYITQN 278
           + L   + 
Sbjct: 252 IILDNVRR 259


>gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 228

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           R + L + L+ V+  HN+ AI+R+A A  C  +           +   +  +   L+   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRTADAVGCHHVHAVWPEKQKWLTNNTSGGSKNWLDTHL 75

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  I +   +++  +          S+      +       A+I+G E  G+  K  E A
Sbjct: 76  HKNIDDAAASIRAHNPDVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISEKALEYA 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ L+  Q   
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
 gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
          Length = 233

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 1/223 (0%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             ++ G H+V +A+ N   +I Q+L  +N   ++D                         
Sbjct: 3   KFWIAGKHSVISAVLNKHNEIHQILL-QNIEHKIDLPKEFHRIVKKIEKDEINKILDNYP 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +  HQG   +     S   + +   + L++LD + D  NIGAI+R+A AF+   II  K+
Sbjct: 62  DISHQGFFAQIERNYSNNKEELFKEKNLIMLDGLTDQRNIGAIIRTASAFNIKQIIINKK 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
              + + +L K+ASG ++ I   + SN+ +  +++    +   G   +SK   ++ + ++
Sbjct: 122 DIVTSNLLLNKTASGGMDLINIFQTSNIINLFKELKKKDYWFYGFDGNSKTIFKKNLLSE 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           K   I G+EGKGLR   ++    +  +++   + +LNVS + A
Sbjct: 182 KNVFIFGSEGKGLREIIKKNCDHLVRININNKVDSLNVSASVA 224


>gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
 gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
          Length = 244

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N +  +  + AT   LA           
Sbjct: 8   KLIRALGQK-KQRKAHGLFLVQGEKNVLE-LTNSTLNVQHIFATAEFLAEHAQALAGFES 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                     +  +V   A         A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 66  IEATLDDLTKVSTLVSNNA-------AIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II ++  +   +     +  G+   +   ++       +         +
Sbjct: 119 IRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  +          +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNIRRQ 242


>gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
 gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
          Length = 290

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 24/270 (8%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++  ++    +   +     + G  +V   L+     +  L     +       
Sbjct: 10  NPRAERVRRVSELADRKGRKRSGRFMVEGPQSVRELLSWHPDIVEDLYVEVVSAEPDAAF 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQ 133
                       +     V  V    +  +    + V     +      +          
Sbjct: 70  ITPTVAQMAGKAMQTGAYVHKVTHAVMQHMSSDAQGVLAVADMRAFLDSAVIDGDFDERT 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++     V DP N G ++RSA A  C G++         +  + +S +G+L H+P + + 
Sbjct: 130 MVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG 189

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----------ILGAEGKGLRPK 243
              +        G                E   D +A+          + G E +GL   
Sbjct: 190 TD-EYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVLFGNEARGLTQD 248

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E    +  + + G  ++LN+  +AAV L
Sbjct: 249 VLERVDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 2/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++++ V+ PHNI AI+R+  A     +    + +  +        +   E    
Sbjct: 16  RQPDLTVLMEDVHKPHNISAIIRTCDAVGVMAVHAMNQVADGDVLDTYSQVAQGSEKWVD 75

Query: 190 IRISNLTD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +           Q             SD              A+++GAE  G+     E 
Sbjct: 76  LNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGAERWGVSDTAAEL 135

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS AAAV L+  Q   
Sbjct: 136 VDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQR 168


>gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP
           31758]
          Length = 395

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 148 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVEED 207

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 208 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 266

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 267 AHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 325

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 326 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 385

Query: 275 ITQNH 279
                
Sbjct: 386 EWWRQ 390


>gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
          Length = 276

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D I G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus]
 gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus]
          Length = 446

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 30/300 (10%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           K S+   S +   Y KL+++   Y  +    +  +       + L G   +   +     
Sbjct: 150 KSSKAFDSKRKLEYLKLKQSDSLYGDLSLLVKSRKRRELKCKMVLEGKRLIKDGIEAGLS 209

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               +    N + +LD D  +     +  V    + +          + +   P     +
Sbjct: 210 TDIIVF---NDVTKLD-DLKIDKSVNLVQVERNVMQEWSSVTTCPGLIGIFRKPKDMNKI 265

Query: 127 DAVRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                S     + +V D++ +P+N+G+I+RS+ A     I+  K  +        + A+G
Sbjct: 266 VIQNRSLIPLPITVVCDNIREPNNLGSIIRSSAAIPTGRIVLLKGCTCPWDPKCLRGATG 325

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQ---------TIGLSSDSKKPLEQEIKNDKIALIL 233
           A   IP      + +  + +                 G  S  +       +   + L +
Sbjct: 326 AQFRIPISGPVAMDELEELIPPNATFLVADNKTGRIDGKFSFCRYDAANYREMQHVVLFI 385

Query: 234 GAEGKGLRPKTQETAT-------------SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G E  G+    +   T                H+ +   I++LN ++A +V LY  +   
Sbjct: 386 GGETLGISNDVRRFITGFTEKSLNDTSVCYNVHIPLANGIESLNTASALSVLLYEIKRQL 445


>gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 344

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G I+RS   
Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAH 220

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS  
Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL       ++ L+LG E  GL   + +       +   G +++LNVS A  V L   
Sbjct: 280 GVPLSSAELPARMVLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAEW 339

Query: 277 QNH 279
              
Sbjct: 340 WRQ 342


>gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
          Length = 344

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + K  G      V   +       +S  L        ++ L+ + +PHN+G I+RS   
Sbjct: 161 ELQKASGTEHHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAH 220

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS  
Sbjct: 221 FGAKGLLV-DDASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSHQ 279

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             PL       ++ L+LG E  GL   + +       +   G +++LNVS A  V L   
Sbjct: 280 GVPLSSAELPARMVLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAEW 339

Query: 277 QNH 279
              
Sbjct: 340 WRQ 342


>gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 260

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++       R       + + G    + AL          L            A
Sbjct: 9   QNPTVKRLVRLRSSRRLREGEGTVLIEGARETARALAAGWAAGELYLCPALFSPEAAELA 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  +  +   K+ G+E     L L   P        +    LL+VL  +  P 
Sbjct: 69  PQLPMSAVTELSAEAFAKVSGRENPDGVLLLSRPPQERWP--TLPPQALLVVLHGLEKPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+      DG++   R +   S  + +++ G++  +P  +     +AL  +   
Sbjct: 127 NVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQGSVFTVPLRQQDEA-EALAWLEEE 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF  +  + D+ +   Q     ++AL+LG E +GL    +    S   + M G   +LNV
Sbjct: 186 GFTLVACTPDAPRTFWQADLTGRVALLLGTEHEGLPEHWRRH-ESAVSIPMRGQADSLNV 244

Query: 266 SNAAAVALYITQNHF 280
           + AAAV LY      
Sbjct: 245 ATAAAVVLYEALRQR 259


>gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 271

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLDGL 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + + +G       LA  +        + +  ++ + VL+ VND  N+G
Sbjct: 76  A-APFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D +I     +        + + G    +P+ R +N    L  +    F+
Sbjct: 135 SVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFR 194

Query: 209 TIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D   P   +       ++IA+++GAEG GL+  T  +A     + M     +LN
Sbjct: 195 LLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERDR 268


>gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
 gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
          Length = 198

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 9/194 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHN 146
           +  P + +D++V  E  HQG+  + A      L+               ++LD + DPHN
Sbjct: 2   QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G
Sbjct: 60  LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G  +  K           I L++G+EGKG+     E    +  L M G + +LN S
Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179

Query: 267 NAAAVALYITQNHF 280
            AA++ +Y      
Sbjct: 180 VAASLLMYEVYRKR 193


>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 235

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L++V+ PHN+ AI+R+  A     + T   +          +          
Sbjct: 16  RQTDLTVCLENVHKPHNVSAIVRTCDAVGIHRVHTV--WEKKYQFRRGTAMGSQQWVRQT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                     +         +   SD+             A++ G E  G   + +  A 
Sbjct: 74  NHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDVDYTKPTAILFGQEKYGATDEAKALAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS AAA+ LY  Q    
Sbjct: 134 QDIVIPMMGMVQSLNVSVAAALVLYEAQRQRT 165


>gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 254

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 19/259 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T   L       + P
Sbjct: 6   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGTAAMLR----AVSTP 58

Query: 89  HPFPVKTVPPQ-TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           H   V  +P      +I  + +    +A+   P     +       L ++LD V DP N+
Sbjct: 59  HDAEVVELPESFDFKRISTQTSPQPLMAVFDLPAEPEPV----VEGLTLLLDGVQDPGNV 114

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSW 205
           G ILR+A  F    +      +   S  + +++ GAL  +    + N  D     +    
Sbjct: 115 GTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGI 174

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GII 260
                 L   S          +   L+LG+EG G+ P+     T    +        G  
Sbjct: 175 PVYGAFLEGQSLYEAPLPNFTEPAILVLGSEGHGISPEVAAEITDRLTIPASGLSVKGHT 234

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ A A+     +  
Sbjct: 235 ESLNVAIATAILCSEWRRR 253


>gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
          Length = 290

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 102/270 (37%), Gaps = 23/270 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +S+   +         + +  A+          L ++  L  L       
Sbjct: 18  DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76

Query: 89  HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135
                    P+       ++++ G   +H+G        + PTL            ++ +
Sbjct: 77  TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPTLADLLATARGGAPARRV 135

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+++ D  N+GA  RSA A   D ++ T + +        + + G +  +P+ R+ + 
Sbjct: 136 VVLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESW 195

Query: 196 TDALQKMHSWGF--------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +  +   GF               D       +  + ++A+++G EG GL   T   
Sbjct: 196 PGDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDARLAMVMGTEGDGLGRHTIAA 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     + M   + +LNV+ A+AV  + T+
Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 270

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 103/274 (37%), Gaps = 23/274 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           KI SL+D   A+ R              KS + +        G   V   L +       
Sbjct: 5   KIDSLQDDRLAQYR----------DLRNKSHYRT-TGYFVAEGWRVVERLLRSGLTVDSI 53

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
           L++ + A   +   A+      V  +P +  +++VG    H G+        +P+L    
Sbjct: 54  LVSERRAELMVPKFADRA---DVLILPQREAEELVGY-NFHGGVLASALKPDNPSLSALL 109

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               +  ++   H+  P N+G++ R A  F   GI+  +           + + G +  +
Sbjct: 110 NGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRRCVRVSMGTIFQM 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRP 242
           P     ++   LQ++ +     +  + DS++              +  L+LG E  GL  
Sbjct: 170 PIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATPGKRRVLLLGNEADGLGQ 229

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +   ++  + M   + +LN++NAA + LY  
Sbjct: 230 PFLKLVDAVYDIPMADGVDSLNIANAAGIFLYEL 263


>gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 228

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I      +     +   SA         
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHQI-HAVWPNEQMRTLSHTSAGARNWVEVQ 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S L        +     +   S+              A+I G+E  G+ P+  + A 
Sbjct: 75  THNSTLEAVSHLKETGMQILVTNLSEHAIDFRAIDYTQPTAIIFGSEKSGISPQALQLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 HDIVIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 345

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDFLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
 gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
          Length = 296

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 49  RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHVVEED 108

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +     Q      ++ L+ V +PHN+G I+R+ 
Sbjct: 109 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 167

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 168 AHFGINGVLL-QDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 226

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 227 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLA 286

Query: 275 ITQNH 279
                
Sbjct: 287 EWWRQ 291


>gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 228

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A+LR+A A     +                ++        
Sbjct: 15  NRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEV-HAVWSELEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S      +             SD+     +       A+ILG E  G+ P     A
Sbjct: 74  RVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGNERDGVSPAGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AAA+ +Y  Q    
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRT 166


>gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 239

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +        
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61

Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                        T       L   + + L+++LD + DP N GAI+R+A AF  D II 
Sbjct: 62  NIAFKLVKKNFQKTGLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIY 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +P E+  
Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +K   I+G E KG+ P   + A     + M G +++LNV  A  + L   +
Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234


>gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 260

 Score = 95.7 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 98/272 (36%), Gaps = 19/272 (6%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
            + + F    +  +K        K +++  QK +         + G   V   L + + K
Sbjct: 6   YNSRAFIWDSTMISKT-----QLKLIRALGQK-KQRKAHSLFLVQGEKNVLE-LASSTLK 58

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  + AT      L   AN+   +         + K+    + +       A +  P ++
Sbjct: 59  VQNIFATAEF---LAEHANVLAGYECTEAALDDLTKVSTLVSNNA----AIAVVEIPRIE 111

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   L++ LD V+DP N+G I+R A  +    II ++  +   +     +  G+   +
Sbjct: 112 VPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRV 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              ++       +         +   S  +          +  L++G+E  G+R +  + 
Sbjct: 172 QVSQVDLPDYLAKANLPVYGAFLEGVSVHQ-----TAFKAEGILLMGSESHGIREQAAQY 226

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            T    +   G  ++LNV+ A  + L   +  
Sbjct: 227 VTDKITIPAFGGAESLNVAMATGIILDNIRRQ 258


>gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
          Length = 257

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 6/250 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M S +++    +    +   GV  V   L +    +  L  T   LA L  D       P
Sbjct: 1   MNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAP 58

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
                   + +++G       LA             V  ++ + VL+ VND  N+G+I R
Sbjct: 59  YYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A   S D ++     +        + + G    +PY R ++    L  +   GF+ + +
Sbjct: 119 NAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAM 178

Query: 213 SSDSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +              + +++IAL++GAEG GL       +     + M     +LNV+ A
Sbjct: 179 TPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATA 238

Query: 269 AAVALYITQN 278
           AA+A Y    
Sbjct: 239 AALAFYERTR 248


>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
 gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
          Length = 246

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                + GVH +  A  +    I QL     +    D        F +     +++    
Sbjct: 27  TGLALIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSDLIEYANETFEINLKVAESL---- 81

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 QG                  ++ ++++D + DP N+G ++R+A A   D I+  
Sbjct: 82  SGTVTPQGFFAVIKKPDYDV----TTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVME 137

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +      + +++ G++ HIP I  S  +             +  +   K+   QE  
Sbjct: 138 KGTADPYQDKVLRASQGSVFHIPVISESLQSYINTFNGPVYGTALDNAVSFKEIEAQETF 197

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ALILG EG+G+ P   E  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 198 ----ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQLK 245


>gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum
 gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 239

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 10/233 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +        
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61

Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                        T       L   + + L+++LD + DP N GAI+R+A  F  D II 
Sbjct: 62  NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +P E+  
Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +K   I+G E KG+ P   + A     + M G +++LNV  A  + L   +
Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234


>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
          Length = 243

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L++V+ PHN+ A++R+  A     + T   +          +          
Sbjct: 16  RQTDLTVCLENVHKPHNVSAVVRTCDAIGIHRVHTV--WEEKYQFRGDTAMGSQQWVRQT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                +   SD+     +       A+I G E  G   +    A 
Sbjct: 74  NHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREVDYTKPTAIIFGQERYGATDEAIAMAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAA+ LY  Q   
Sbjct: 134 QDIIIPMAGMVQSLNVSVAAALVLYEAQRQR 164


>gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 250

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 8/230 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           LYG + +   L + S +I +L        +   +            +       + +I  
Sbjct: 20  LYGRNVIVEILQDKSIEIHKLHLADSNKPDGAVKKILLLAKERDIEIVKHDKAALSRISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                QG+A++        ++ ++      L+ LD + +P N+G I+RS  A + DGII 
Sbjct: 80  NAKQDQGVAIDIISKTYLHVNMLKELTKYRLIALDGIQNPQNLGMIIRSCAAGNIDGIIL 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+ S   S ++ K+++G L  +P    + L + L +       T+   + +     QE 
Sbjct: 140 PKKNSAKISPLVVKASAGTLFKLPIYFCNTLQEVLTEQQEAKIYTLSSYAKTTIYDIQE- 198

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++K   +LG E +G+  +  +   +   + M   +++LNV+  A++  +
Sbjct: 199 -SEKTIYVLGNENEGVSHEVAKLCNNSVSIPMNRGVESLNVAVTASLIAF 247


>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 246

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 130/221 (58%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG H V AAL NP R + ++  T+ AL  LD    LP   P+       + ++V  +A H
Sbjct: 18  YGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVYADGADLGRMVPSDAPH 73

Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QG+  E  PL    L         + + ++VLD V DPHN+GAILRSA AF    I+T  
Sbjct: 74  QGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  IGL  ++++ L + I  
Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
 gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 258

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 3   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  ++            
Sbjct: 40  LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKKIVVTRKIFEELSSQKNSQG----IIIL 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 96  YNKKTNDLKSPSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +  P  +    +K  +I G EG G+
Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNVIIFGNEGNGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 216 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252


>gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 221

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        ++ G E  G+  +  + A +   + M G++++LNVS AAAV L+  Q  
Sbjct: 104 YREVDYTRPTCVLFGNEKHGVSREAADAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQ 163

Query: 280 F 280
            
Sbjct: 164 R 164


>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
 gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
          Length = 302

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 105/289 (36%), Gaps = 41/289 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALAR---LDW 83
             + +   + + R  ++ +   + G   V  AL    +   +  +  T++A  R   +  
Sbjct: 8   RVRDIAKLSTR-RGRTKKKQFMVEGPQAVREALKAHLQSPVLDAVYVTESAYERHPDIAE 66

Query: 84  DANLPHPFP---------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131
                H  P         ++ V  + +  +         +A+      S ++    N   
Sbjct: 67  LLEQAHGTPTPEEGRRVFMRVVTDEVLAAMADSVTPQGIIAISFMVDTSFSVLWGENALN 126

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L+ VL  + DP N G ILR A A   D +ITTK      +    +S +G+L H+P I+
Sbjct: 127 PKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQ 186

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------------------EIKNDK 228
              L +  + + S G   +         L+                           +  
Sbjct: 187 GVELEEFAEDVKSQGTVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRP 246

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + G E +GL  + +  AT    + + G  ++LNV  AAA+ LY + 
Sbjct: 247 TMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASA 295


>gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
 gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
          Length = 253

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++    +     G   V   L         L AT   L++        
Sbjct: 7   RIKYIHSLELK-KNRKTEKVFLAEGPKLVGDLL--GHFPCRFLAATPEWLSQHPKLPVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +        Q +          T  +V +  L + LD V DP N+G
Sbjct: 63  ---DVSEVSDEDLSR-ASLLKTPQQVLAIFEQPEYETDASVISHSLCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          + T     + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTPLPDLIQSLKDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EGKG+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQKLSSNGLIVMGNEGKGIGKEVEQLINRKLYIPNYPAERETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 251

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 8/235 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G   V   L +    +  +  +++A   L           V+    +  D        HQ
Sbjct: 17  GRKPVLELLASRPHALDTVFLSEDATG-LGEVIGKCRELGVRFRKVRRPDLDRMFPGNHQ 75

Query: 113 GLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           G+           LD            L++ LD V DP N+G + R+ +A    G++  K
Sbjct: 76  GVVARLRGRQLIELDRLITQVCQSPFPLILALDQVQDPGNVGTLARTLLALGGAGLLFPK 135

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIK 225
             +       AK+A+GAL+ +P  ++ NL  A      +        +    + L Q   
Sbjct: 136 DRTAFIGPAAAKAAAGALDSLPLCQVVNLARALDTCAEAGLAIYGSGTGPDSRNLFQARL 195

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           N    L+LG E KG+RP   +  T M  + M G   +LNV+ A A+ +       
Sbjct: 196 NFPAVLVLGNEDKGMRPNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQR 250


>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 249

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 10/251 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALARLDWDANLP 88
            ++  +QK ++ ++     + G H +     A  +        +    +   L+  A   
Sbjct: 5   DIKKLHQK-KYRNEYGCFLVEGEHLILELAKAAKHNPALQASTVYLSESYGELEQSALNG 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + K+   +     +A+              +++  + L  V DP N+G
Sbjct: 64  LSLKQVRVTDKQMQKMADTKTPQGIVAVVPFNDERTQQAIASDNERTVYLYEVQDPGNLG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+   F     + +       +  + +++ GA+ H+P  +  ++ D   +   +   
Sbjct: 124 TILRTLAWFGGFRCVLSPNSVDPYNPKVVRASMGAIFHVPIEQNISIDDMQNRFDEFACL 183

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKALNVSN 267
            I     S      E  +++   I G E +G+   +  +  T+   +   G++++LN++ 
Sbjct: 184 DINGKPLSS-----EGFSEQRCFIFGNEARGVPHEELSKLKTTAYSIQGAGVVESLNLAT 238

Query: 268 AAAVALYITQN 278
           A  +  Y    
Sbjct: 239 AVNMCAYELNR 249


>gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 259

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 5/234 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +        V+  L++   ++  +LATK          N      +  V    +  I
Sbjct: 27  EDNSFIADSPKVVNMLLDS-EIEVKSILATKEYYNEFSELINSKKIEKLFLVDKDEMQNI 85

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           VG +  H  +   T P  +           +++LD +    N+G+I RSA A   D  + 
Sbjct: 86  VGHKIHHNCMMHGTRPDETSLE---ALGDNILMLDAITSTENVGSIARSAAALGVDSYLL 142

Query: 165 TKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            ++          + + G +     +I         +             +     L Q 
Sbjct: 143 PRQSPHPYGRRALRVSMGYVSKLKVHIYEDISQTIQELKKDGYRIYAAEVTPDATLLSQV 202

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               K  L++G EGKG+  +  +    +  + M   +K+ NVS AA++ +Y  +
Sbjct: 203 KSPQKWVLLMGHEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMMYQLK 256


>gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 268

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 84/244 (34%), Gaps = 5/244 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82
           ++   K +++  +K +H  +       G+  ++ A          +LA +     L    
Sbjct: 12  SNPTVKALRALREK-KHRKRERKFLAEGLRLLTDARECGHVPETLVLADRRDPHPLLSAL 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            ++       V    P  + KI GK+       +      S        + + +V   + 
Sbjct: 71  EESVEASGGEVIETTPDILAKITGKDNPQAVAGVFAEFDTSLAALDRSCADIWLVAQALR 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I     +   S    +++ GA+      +     +    +
Sbjct: 131 DPGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGAVFTQGIAQAEWS-EFESWL 189

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +   Q +  S    +P           +++G E +GL    +        + M G   +
Sbjct: 190 RAGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEDYEMACDLRVTMPMKGRADS 249

Query: 263 LNVS 266
           LN +
Sbjct: 250 LNAA 253


>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 244

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N    +  + AT +    L  +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHASLFE 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  PT +    + L++ LD V+DP N+G I
Sbjct: 63  FDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPEATGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   +        Q         +
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPAYLEQANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K             L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFTANGILLMGSESHGIREHAAKYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium
           HF10_12C08]
          Length = 228

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 63  NPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           N +R  +++  T  A  +L  +  L            + ID ++   + HQG+ +    +
Sbjct: 2   NKNRVKYEVYFTSEAERKLRSEVKLESYNIITIRKTREEIDLVLKGISNHQGICIRVEKI 61

Query: 122 LSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             P L     +  + + ++ +LD ++DP N+GAI RSA+AF  DGII T   S +E++ L
Sbjct: 62  QPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFL 121

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+AS A++ IP+ +I N++  ++ +   G+   GL  +++  +      +KI  ILG+E
Sbjct: 122 AKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGSE 181

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            KG+R  T         + M   +++LNVSNAAA+ ++   N
Sbjct: 182 SKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223


>gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8]
 gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8]
          Length = 227

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H ++  LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VVYGKHVITHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
 gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 292

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++      +++   +     + G  +V  A+      +  L    +       
Sbjct: 9   DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68

Query: 84  DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130
             +  L             V       + +I         +    +         L    
Sbjct: 69  IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 128

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
            +  +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P  
Sbjct: 129 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188

Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241
                   T             +  + + K      +  D        A++ G E +GL 
Sbjct: 189 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705]
 gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705]
          Length = 294

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++      +++   +     + G  +V  A+      +  L    +       
Sbjct: 11  DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 70

Query: 84  DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130
             +  L             V       + +I         +    +         L    
Sbjct: 71  IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 130

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
            +  +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P  
Sbjct: 131 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 190

Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241
                   T             +  + + K      +  D        A++ G E +GL 
Sbjct: 191 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 250

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 251 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 282


>gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
 gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
          Length = 289

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 89/264 (33%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----------NAL 78
             +K+     + R   +     + G  +V  A+      +  L                 
Sbjct: 15  RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAVDGPDGPRIAGET 73

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                + +  H   V       + +I         +    A   +     +     +   
Sbjct: 74  LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 133

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195
             V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP + +      
Sbjct: 134 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249
             A +K+       +  +   +     E+  D+       A+I G E +GL P       
Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEVLRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + + G  ++LN++ +AA+ L
Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277


>gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329]
          Length = 244

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   +         +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TDFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia]
 gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia]
          Length = 407

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 86/263 (32%), Gaps = 28/263 (10%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
            + + G   +  AL    +    L + K+ LA +  D   A L     +  VP   +   
Sbjct: 139 QIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEDVGVAQLETGTKIYKVPQHDLKTW 198

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLL--------MVLDHVNDPHNIGAILRSAVA 156
                    +A+   P        +   Q L        +V D++ +P+N+G+I+R+  A
Sbjct: 199 SSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAA 258

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-----------DALQKMHSW 205
             C  ++ T        +   +   G    +P                   D      + 
Sbjct: 259 LPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDDVTWEELALTIPPEAADDCHVFIAE 318

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT------SMAHLHMPGI 259
             Q    ++ +    + +       LI+G E  G+  +               ++ +   
Sbjct: 319 SNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVSEEAYRFLNLVGGKGKCIYIPLAAG 378

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           I +LNV++A  + L+  +    +
Sbjct: 379 IDSLNVASALTLLLFELRRKLNQ 401


>gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RS  AF    +      +P  +     SAS       
Sbjct: 73  HRQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPFPALGRKTSASARKWVES 132

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +                   S + +PL         A+I+G E  G+ P+  + A
Sbjct: 133 ARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVIMGNEHSGVEPELLQMA 192

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAA+ L       
Sbjct: 193 DGELYIPMYGMIQSFNVSVAAAIILSEAARQR 224


>gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
 gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
          Length = 257

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 82/258 (31%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K +               + L GVH   A L +    +  L     A      
Sbjct: 6   SRDNPAVKALHKLAAGGGRRD--GRILLDGVHLCQAWLAHQGTPLQALFDV--ARLDHPE 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L    P +         + G  +V  G  +             R  +  ++ D + D
Sbjct: 62  IRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+  A     ++     + + S  + +S  GA      + I    D    + 
Sbjct: 122 PGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF---ALHIHEHLDLEAVLP 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKA 262
                 +  +      L         A + G EG+G+       A    H+      +++
Sbjct: 179 RLDVPLVATTLARSGSLYDTDLPACCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV  AAA+ L+  +   
Sbjct: 239 LNVGAAAAICLFEQRRQR 256


>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
 gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
          Length = 244

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 14/252 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +  K +++  QK +         + G   V   L N    +  + AT +    L  +   
Sbjct: 5   KQLKLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHAS 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F         + K     + +       A +  PT +  + + L++ LD V+DP N+
Sbjct: 60  LFEFDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPKATGLMIALDGVSDPGNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  +    I+ +   +   +     +  G+   +   +        Q       
Sbjct: 116 GTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPEYLEQANLPVYG 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +   S  K             L++G+E  G+R    +  T    +   G  ++LNV+ 
Sbjct: 176 AFLEGESVHK-----TEFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAM 230

Query: 268 AAAVALYITQNH 279
           A  + L   +  
Sbjct: 231 ATGIILDNMRRQ 242


>gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 289

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80
             +K+     + R   +     + G  +V  A+      +  L                 
Sbjct: 15  RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAADGPDGPRIAGET 73

Query: 81  --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                + +  H   V       + +I         +    A   +     +     +   
Sbjct: 74  LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 133

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195
             V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP + +      
Sbjct: 134 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249
             A +K+       +  +   +     E   D+       A+I G E +GL P       
Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + + G  ++LN++ +AA+ L
Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277


>gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 251

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 82/256 (32%), Gaps = 19/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            D + +++   K R  ++       G   +   L      + ++ + +            
Sbjct: 4   ADIQLVRALADK-RGRTEHGLFVAEGEKLIGE-LRASHLSVRRIFSLEGVF--------- 52

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +   V+TV P+ ++++  +                         +L + LD V +P N+
Sbjct: 53  -NGPEVETVAPRDMERLS-QLKTPSNSLALVEIPRCDLKPERLRGRLTLALDDVQNPGNL 110

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F    I+ ++  +   +  + ++  GA+  +            +       
Sbjct: 111 GTIIRLADWFGITDIVCSEASADCFNPKVVQATMGAILRVRVHYTDLAALLSKAAALGLP 170

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKAL 263
                       + +        +++G EG+G+      T T    +          ++L
Sbjct: 171 VCGTFLE--GANIYETELKPAGIVVMGNEGRGITDAVARTVTQKLFIPPWPADRRGSESL 228

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A  +     +  
Sbjct: 229 NVAMATGIVCGEFRRQ 244


>gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 279

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80
             +K+     + R   +     + G  +V  A+      +  L                 
Sbjct: 5   RVRKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAADGPDGPRIAGET 63

Query: 81  --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                + +  H   V       + +I         +    A   +     +     +   
Sbjct: 64  LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATAQGTQLPEKPFVAAF 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195
             V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP + +      
Sbjct: 124 WQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 183

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249
             A +K+       +  +   +     E   D+       A+I G E +GL P       
Sbjct: 184 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 243

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + + G  ++LN++ +AA+ L
Sbjct: 244 DIVRIPLYGKAESLNLATSAAIML 267


>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 250

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 10/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YG+H +   + N S KI  +L     K+   +     +      +K V  + ++KI
Sbjct: 2   NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISNEKNIKIKFVDKKFLNKI 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              +     +A      +            + +   ++LD + DP N+G+ +RSA  F  
Sbjct: 62  TNNKKHQGIVAYIKNSKILKEPFLLKMLENKKNYFFLILDGIMDPRNLGSCIRSAYIFGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   S+ + K ASG+L+ IP I ++NL   +  +  +  Q IG S  ++  
Sbjct: 122 QAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKAQLD 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN- 278
           +  +     IA+++G+E  G+    +E   ++ ++        LN+S A  + ++     
Sbjct: 182 ICNKKLKQSIAVVMGSENLGISRLVKENCDNILNIPTVKNNLPLNISVATGICIFEIIRK 241

Query: 279 -HFAK 282
            +  K
Sbjct: 242 NYLNK 246


>gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103]
 gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103]
 gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355]
          Length = 377

 Score = 95.3 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 10/263 (3%)

Query: 24  RRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +  +     K +    Q  R   +     +YG +   A   +    I +    ++   R 
Sbjct: 116 KPENPGISGKGVVDVEQIRRQRLEETR--VYGENACQALFQSRPECIVRAWFVQSVTPRF 173

Query: 82  DWDAN--LPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
                    +      V    I K  G      V   +       ++  L+   +   ++
Sbjct: 174 RDALRWLAANRKAYHVVDDAEITKASGTEHHGGVCFLIKKRMGMDVAEWLNKAESKDCVL 233

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            L+ V++PHN+GAI+RS   F   G++     S  ES    ++A G  EH+  I  +   
Sbjct: 234 ALEDVSNPHNLGAIMRSCAHFGVKGLLV-NDASLLESGAAVRTAEGGAEHVQAISGATFN 292

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + L+     G+  +  SS     L   +   K+ L+LG E +GL   T +       +  
Sbjct: 293 EGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMVLVLGQEREGLSDSTFQQGDMSLSIGG 352

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
            G +++LNVS A  V L      
Sbjct: 353 TGNVESLNVSVATGVLLAEWWRQ 375


>gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
 gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
          Length = 244

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   +         +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 258

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 92/247 (37%), Gaps = 21/247 (8%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVP 97
           +   + +     G   V   L         L+AT N          + HP     +  V 
Sbjct: 24  KKRKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNW-------LKINHPVTANEIIEVT 74

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + + +   ++   + LA+   P      + +++S L + LD V DP N+G I+R A  F
Sbjct: 75  QEELSRASLQKTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLGTIIRLADWF 133

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + I  +   +   +    ++  GAL  +     S      Q + S     +  +  S 
Sbjct: 134 GIEHIFCSAGTADVYNPKTVQATMGALARVKVHYCSLP----QLIESLADIPVYGTFLSG 189

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVAL 273
             +  E  +    +++G EGKG+ P+ ++      ++          ++LNV+ A AV  
Sbjct: 190 NIIYAESLSAHGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVC 249

Query: 274 YITQNHF 280
              +   
Sbjct: 250 SEFRRRL 256


>gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU121]
          Length = 246

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                + GVH +  A  +    I QL     +             F +     +++    
Sbjct: 27  TGLALIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSSLIEYANETFEINLKVAESL---- 81

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 QG               +  ++ ++++D + DP N+G ++R+A A   D I+  
Sbjct: 82  SGTVTPQGFFAVIKKPDYD----ITTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVME 137

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +      + +++ G++ HIP I  S  +             +  +   K+   QE  
Sbjct: 138 KGTADPYQDKVLRASQGSVFHIPVISESLQSYINTFNGPVYGTALDNAVSFKEVEAQETF 197

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ALILG EG+G+ P   E  T    + + G  ++LNV+ A ++ LY  +
Sbjct: 198 ----ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQLK 245


>gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 303

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 20/253 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVP 97
            +           ++ AL+     +  L   +  LA+     +           PV  V 
Sbjct: 50  RERGLFIAESDKVINRALDAGVH-LRSLFLEEKWLAKTRPVLDRLGHEHTAKAIPVFIVT 108

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +    + G E     LA+    +L      ++N++ + +L+ + +  NIGA  RSA A 
Sbjct: 109 HEQFRAVTGYEVTRGALAVFERLVLPRPEALLKNARRVAILEDIVNYTNIGAAFRSAAAL 168

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           S D ++ T           A+ + G +  +P+ RI     +             L     
Sbjct: 169 SIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGSTGDWVESGIDLLHRFGF 228

Query: 218 K-------------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           K                +    +++AL+LG EG GL  +T+     MA + M   I +LN
Sbjct: 229 KTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMAPGIDSLN 288

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 289 VAAASAVAFWETR 301


>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
 gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
          Length = 262

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 96/241 (39%), Gaps = 10/241 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G + +  AL +    + ++L TK    +L       +   +  V    +
Sbjct: 25  YRKEFNLALIEGWNIIDEALQHN--LVVEILTTKINQRKLKNF----NNILLTIVSESIL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+  +    Q +            +  + +Q +++L+++ DP N+G ++R+ + F    
Sbjct: 79  TKLS-QSKNSQNIIGVIDLTKVKEQNNFQFNQNILLLENIQDPGNVGTLIRTGLGFGFTN 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKK 218
           II         +  + +++ GA+  +     + +     +++ +   T      S   + 
Sbjct: 138 IILYNHTVDLFNDKVLRASQGAIFKVAIKEANLIEIKNFQLNRYKIITTGLKRQSVFLQD 197

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              Q  +N++  L LG EG GL    QE +     + +   +++LNV+ A  + +Y    
Sbjct: 198 CHCQFKQNERYILALGNEGHGLSTTLQEISDYNVQIKINSQLESLNVAQAGTILMYEINR 257

Query: 279 H 279
            
Sbjct: 258 Q 258


>gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099]
 gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099]
          Length = 265

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 5/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDK 103
           +       G   +   L++       +L  +N L  L+   +      PV  V    +D 
Sbjct: 28  RQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDILHKAPADLPVYVVTSAVMDA 87

Query: 104 IVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I G       LA+            LDA+ +  L++VL  + +  N+G+I R+A AF  D
Sbjct: 88  IAGFHMHRGILAIGRKATPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++              + + GA   IP+   ++ +     +   GF+ + LS   +  +
Sbjct: 148 AVLMDTTCCDPLYRKAIRVSVGAALKIPFASFTDTSGFTAMLAERGFEQLALSPRGRTDI 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 +++AL LG EG+GL  +          + M     +LNV+ A+A+AL+  
Sbjct: 208 RDAKPAERLALYLGTEGEGLPERLLARL-QTVRITMSKGFDSLNVAAASAIALHHF 262


>gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
           Trmh Family From Porphyromonas Gingivalis
          Length = 257

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 17/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T   L       + P
Sbjct: 9   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEXL--PFYRCRXLVGTAAXLR----AVSTP 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V  +P         + +         A    P         L ++LD V DP N+G
Sbjct: 62  HDAEVVELPES---FDFKRISTQTTPQPLXAVFDLPAEPEPVVEGLTLLLDGVQDPGNVG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWG 206
            ILR+A  F    +      +   S  + +++ GAL  +    + N  D     +     
Sbjct: 119 TILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPLKNTVDTLAYFRRQGIP 178

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIK 261
                L   S          +   L+LG+EG+G+ P+     T    +        G  +
Sbjct: 179 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 238

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 239 SLNVAIATAILCSEWRRR 256


>gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 227

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIVGKE 108
            +YG       L +   +I  +   K    +L            K     +   + +   
Sbjct: 2   IIYGKQLFLHLLKHYPSRIKTVFLPKKCDTKLFSHIA---NVTQKICNIDERKAQALCHG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E  PL      A++    L++LD V D  NIGAI+RSA AF  DG+I +   
Sbjct: 59  GNHQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGMK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           + +  A+L  S++ A      I +   T  +         T+  +      +++     K
Sbjct: 119 TCNLEAILRTSSAAAF--ELPIALVPSTKDMLNELKQIGFTLYGADMDGVDVQKVTFAPK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ALI+G+EGKGL PK +E   ++  + M     +LNVS AAA+  
Sbjct: 177 RALIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAILC 221


>gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 239

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 10/233 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +        
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNY---ELINLINKNKITYEIVNEAWFKQFDHSLNHQ 61

Query: 112 QGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                        T       L   + + L+++LD + DP N GAI+R+A  F  D II 
Sbjct: 62  NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +  E+  
Sbjct: 122 KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKVD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +K   I+G E KG+ P   + A     + M G +++LNV  A  + L   +
Sbjct: 182 YANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYR 234


>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 249

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 88/240 (36%), Positives = 137/240 (57%), Gaps = 11/240 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M+  ++ ++          YG H V+AAL NP+R + ++  T+ AL  LD    LP   P
Sbjct: 1   MKKTHRSAKPKGAFPRF--YGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLP 54

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNI 147
           +       + ++V  +A HQG+  E  PL    L     +   + + ++VLD V DPHN+
Sbjct: 55  IVYSDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNV 114

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSA AF    I+T  R++P ES VLA++ASGALE +P++R+ NL  AL ++   G+
Sbjct: 115 GAILRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGY 174

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             IGL  ++   + + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 175 WRIGLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234


>gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 230

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 2/230 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   L N    I +++ +K  L +  +   L     +  +  +    +     
Sbjct: 2   IIYGKQIVLYVLENHPSIIEEVMFSKE-LDKKIFSKFLKLGKKIIRLDNKKAQSLAKGGN 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRY 168
                           ++ ++ +  ++VLD + D  NIGAI R+A A   D  +    + 
Sbjct: 61  HQGFFLKLKEEFDYTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDGIVAAGVKS 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 +   S +           S       K   +      ++    K      K+DK
Sbjct: 121 LNESGVIRTSSGAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTDLKKYGTITKDDK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL LG+EG+GL  K          + M     +LNVS AA + +Y    
Sbjct: 181 VALFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIYNLMK 230


>gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 362

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 118 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 177

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L +      ++ L+ V +PHN+GAI+RS  
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLQSAPAKDCVLALEEVGNPHNLGAIVRSCA 236

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 237 HFGVNGVLL-QDPALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSH 295

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 296 KGTTLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLAD 355

Query: 276 TQNH 279
               
Sbjct: 356 WWRQ 359


>gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 272

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  AL+        LL+ K        D    
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALDAGYTARSMLLSAK--WVEPLRDVIDG 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV    P   +++ G       LA      L    D +R ++ + V++ VND  NIG
Sbjct: 75  LTAPVYVAAPDIAEQVTGYHVHRGALAAMQRKPLPAAADVLRTARRVAVMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+      L+ + + GF 
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDRWPGDLEPVRAAGFT 194

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+   +     E    + D++AL+LGAEG GL  +    A     + M   I +LN
Sbjct: 195 LLALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253


>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 278

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 112/282 (39%), Gaps = 32/282 (11%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S  D   A     +R     ++  Q S          + G   V   + + S  +  L
Sbjct: 6   ITSFDDPLVAPYHEMNR-----RNLAQHS------GLFIVEGDKLVDRLITS-SFAMHSL 53

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--- 128
           LA  +   R       P   P+  V   T+   +G    H+G+         PT++    
Sbjct: 54  LAEPDMAERYATQV--PAEVPIYVVDRATLQATIGF-NFHRGILGCGYRREQPTVEQLLT 110

Query: 129 -------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                             L++VL  V DP N+G+ILRSA AF C G++   R +   +  
Sbjct: 111 TPPTVAQVTAGRAADIGNLILVLAEVQDPTNLGSILRSAAAFGCRGVVLGPRCADPFARR 170

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILG 234
           + + + G+   IP    SNL   L+ +   G+Q T  + SD  K L     +   AL+LG
Sbjct: 171 VIRVSMGSALTIPITVSSNLACDLESIAEKGYQLTATVLSDRAKKLGDLQLDVPRALLLG 230

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +EG GL P+          + M     +LNV+ AAAV LY  
Sbjct: 231 SEGNGLAPEWIAMCREHVTIPMAWGTDSLNVAIAAAVLLYHF 272


>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
          Length = 250

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             +L+G H+V AAL N  R+  QLL T++AL  ++           K +P   +++++  
Sbjct: 17  LFWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSPKILPRDELNRLL-P 75

Query: 108 EAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + VHQG+AL+ +PL    L+        ++ L++LD + DP N+GAILRSA AF  DG++
Sbjct: 76  QTVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVL 135

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+R+SP    V+ KSASGALE IP +  +N+   L+ + + GF   GLS +   PL Q 
Sbjct: 136 MTERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQL 195

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +AL+LGAEGKGLRP T +    +  L        LN
Sbjct: 196 PCEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236


>gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180]
 gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180]
          Length = 227

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +L +   L    P          + + +  
Sbjct: 4   VIYGKQVVMHILNSHKEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLARGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
 gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
          Length = 260

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 15/250 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q  +  ++G + V+  L +      ++   +   A+A             VK VP   + 
Sbjct: 11  QHTDTLVWGKNPVTELLKSGETVDTVYLADSLPQAVAGYYTALAKQSGAVVKRVPGNKLQ 70

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+ G    HQG+A   A +   +L+           +  L++ D V DPHN+GAI+RSA 
Sbjct: 71  KLCGTP-DHQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPHNLGAIIRSAY 129

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G++  KR     +  + K+++GA   +P  R++NL  A++ +             
Sbjct: 130 LCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEHNVFVYCADLG 189

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAV 271
                 +   +  +AL+LG+EG G    T++   +   L M       + + NVS AA +
Sbjct: 190 GAPLS-RTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATGVDSYNVSVAAGI 248

Query: 272 ALYITQNHFA 281
             Y       
Sbjct: 249 LCYDVLRRRT 258


>gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 292

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 86/272 (31%), Gaps = 24/272 (8%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++      +++   +     + G  +V  A+      +  L    +       
Sbjct: 9   DNPKSDRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPR 68

Query: 84  DAN--LPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130
             +  L             V       + +I         +    +         L    
Sbjct: 69  IISSTLEKIVETSQDATIYVHYCTGDVMRRISPDAQGIAAVGNAESMHAGADDVELGKNG 128

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
            +  +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P  
Sbjct: 129 RAPQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVL 188

Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGLR 241
                   T             +  + + K      +  DK A+      + G E +GL 
Sbjct: 189 AMSTDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKTVLFGNEARGLE 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
 gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 94/251 (37%), Gaps = 12/251 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTV 96
            + T + +N  + G   V   L +   +I  L   K    +           +    K  
Sbjct: 2   KKQTREDDNTIIAGRKPVQELLLDSPERIDLLYLQKGRQDKNFERTIQRCKKYGIKYKIA 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
               + ++      HQG+    A L     D +          LL+VLD V DP N+G +
Sbjct: 62  DKAELGRVFS--GNHQGVIARVAALPFADFDDMLENLADSPLPLLVVLDQVQDPGNVGVL 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RS  A    GI+T K           K+++GAL  +P  R++N++ AL K    G    
Sbjct: 120 ARSLYALGGAGIVTAKHGGAFLGPAAVKASAGALNKLPVARVNNISQALDKAIDMGINIY 179

Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           G    D          +    L+LG E KG+R   ++    + H+       +LNV+ A 
Sbjct: 180 GAGLDDDSSSAYTAEIHTPAILVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAG 239

Query: 270 AVALYITQNHF 280
           A+ +       
Sbjct: 240 AMLISEFARRL 250


>gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
 gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
          Length = 234

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L + LD V+  +NI A++R+A A     I                ++        
Sbjct: 15  NRQTDLTVCLDKVHKTNNIAAVIRTADAVGIHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                    A Q   +         S++              +I+G E  G+  +    A
Sbjct: 74  IKHYHMDEAAAQFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGNERDGVSEEGLAIA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS A+A+ +Y  Q   A+
Sbjct: 134 DQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAE 167


>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
 gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
          Length = 262

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 9/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S    +++  Q       G   +   L  P+ +   L+ T   +  L     
Sbjct: 14  HAEVKLIKSLQL-AKYRRQSNLFIAEGEKLIGEML--PAYRCQLLVGTAELVEPLLERCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    L       +          Q  ++LD V DP N
Sbjct: 71  ASIAEAVTLPDPKQIERVSGLKSPRPLL---ALCEIPTIEAPQALLQPTLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205
           +G +LR+        ++ T+  +   S  + ++  GAL  +   R ++ T  L     + 
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALLTMLKKTE 187

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263
                           +        L+LG EG G+ P+     +    +  P     ++L
Sbjct: 188 IPVIGTFIDGVPLRTLRLASEQPYILVLGNEGNGISPELSALVSQRITIPSPVDSHCESL 247

Query: 264 NVSNAAAVALYITQ 277
           NV+ A A+ +    
Sbjct: 248 NVAVAGAIVMAHLM 261


>gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232]
 gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 233

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 8/234 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G ++++ A+ N        L                    VK V    +DK+V    
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLRPTNDQIFLKQ-------KVKIVSRDFLDKLVSLNH 56

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 LE               +++++LDH+ D +N+G I+R+A  F    II  K+ +
Sbjct: 57  QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              +    K +SG    + +I ++++  A+ K+    F        +  + +++   N  
Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+ILG EG G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 177 CAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans
           OS217]
 gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans
           OS217]
          Length = 233

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++RSA       I                ++        
Sbjct: 15  NRQIDLTVCLDKVHKTNNIAAVIRSADCVGIHQI-HAVWPDIDMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    SD+             A+++G E  G  P+    A
Sbjct: 74  IKHYRFEEAEQAFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 SQHILIPMIGMVQSLNVSVAAALVMYEAQRQR 165


>gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
 gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
 gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
 gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99]
 gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 276

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
 gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
          Length = 178

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V D  N+G +LRSA A     ++     + + S  + ++  GA      +    
Sbjct: 31  CIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMGAHF-ALTLHERV 89

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   +        L+  +   L +       A I G EG G+ P     A +   +
Sbjct: 90  NLRDWLAGYPHRTLATALTEHNNFSLYELDLRPPSAWIFGNEGSGVSPDILAAADATVKI 149

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M G +++LN++ AA + L+      
Sbjct: 150 PMQGAVESLNIAQAATICLFEQMRQR 175


>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
 gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
          Length = 281

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 19/265 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85
           Y ++ +   +SR       L L     +  AL      +  +L  +     L    +   
Sbjct: 17  YTQLTAHQLQSRGNPSSAKLILESQFVIKTALERGY-PLESILVCREHFDTLMSTLEPFT 75

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVND 143
                 P+ T+P + +  +VG  +VH+G           T+    + ++ L+ VL+ ++D
Sbjct: 76  AAISELPIYTLPKEEMSTLVGF-SVHRGYFACMPRPSRRTVASLNLNSASLICVLETISD 134

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA----------KSASGALEHIPYIRIS 193
             NIGA+ RSA AF  DGII     +   +                A  A          
Sbjct: 135 VSNIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQAASATSHTWAAD 194

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                           +  ++ S   ++ +  + K AL  G+EG GL  + +        
Sbjct: 195 TACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKK-ALWFGSEGWGLSQEARAACDMSVM 253

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   I +LNV+ ++AV  +    
Sbjct: 254 IPMQRGIDSLNVAASSAVFFWECAR 278


>gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 310

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 10/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                + G   V+AAL   +  + +L   ++A  R           PV+ V       + 
Sbjct: 61  EGLFLVEGAQAVTAALAVGA--LVELFVGESAAERHADLLAAA-DLPVRLVTDAAAAALS 117

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                     +  A L    L  +   +L+ V +  NDP N G ++RSA A   D ++ T
Sbjct: 118 ETVTPQ--GLVGVAELPRHELADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVFT 175

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-- 223
                       ++++G+L H+P +   +    +  +   G   +  S  + + L+    
Sbjct: 176 GNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLAG 235

Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
                   A + G E +GL P T  +A +   + + G  ++LN++ A+A+ LY +     
Sbjct: 236 VGTLAGPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQR 295


>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
 gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
          Length = 244

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQVFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNNA----AIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +   +         +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLAEANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        + +  L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TDFSAEGILLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 258

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 3   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 40  LDYNYSPEIIIIREDIYQSNFYFEKLNKFSCKKIVVTTKIFEELSSQENSQGV----IIL 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 96  YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +  P  +    +K A++ G EG G+
Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGNGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 216 SSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252


>gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 253

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++    +     G   V   L         L AT   L++        
Sbjct: 7   RIKYIHSLELK-KNRKTEKVFLAEGPKLVGDLL--GHFPCRFLAATPEWLSQHPKLPVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +        Q +          T  +V +  L + LD V DP N+G
Sbjct: 63  ---DVSEVSDEDLSR-ASLLKTPQQVLAVFEQPEYETDASVISHSLCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          + T     + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTPLPDLIQSLKDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQKLSSNGLIVMGNEGNGIGKEVEQLINRKLYIPNYPAERETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 272

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 9/256 (3%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I +++D    +L     DY  +     + R           G   +  A          L
Sbjct: 4   IVTVEDPEDPRL----HDYTDLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSML 59

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           L+ K      D    L    PV  V P+  +++ G       LA      L    D +R 
Sbjct: 60  LSAKWVEPMRDVIDALT--VPVYVVDPELAERVTGYHVHRGALASMRRKPLPAAADLLRG 117

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ ++V++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +PY R
Sbjct: 118 ARRVVVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR 177

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETA 248
           +     +L  +   GF  + L+ D+      E    + D++AL+LGAEG GL  +    A
Sbjct: 178 LEQWPGSLAAVTEAGFDLLALTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALAAA 237

Query: 249 TSMAHLHMPGIIKALN 264
                + M   + +LN
Sbjct: 238 DEPVRIPMSHGVDSLN 253


>gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 258

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 3   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 40  LDYNYSPEIIIIREDIYQSNFYFEKLNKISCKKIVVTTKIFEELSSQENSQGV----IIL 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S  L++LD V+DP N+G I+R   A +   II TKR   + +  + ++ 
Sbjct: 96  YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +  P  +    +K A++ G EG G+
Sbjct: 156 MGSILNVNLYYLEKSKIINFLKENNYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGNGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 216 SSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 252


>gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 292

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 85/272 (31%), Gaps = 24/272 (8%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++      +++   +     + G  +V  A+      +  L    +       
Sbjct: 9   DNPKSDRVRHIADLTRTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPR 68

Query: 84  DA--NLPHPFP--------VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVR 130
                L             V       + +I         +    +         L    
Sbjct: 69  IISSALEKIVETSQDATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNG 128

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
            +  + V   V DP N G ++R+A A  CD ++         +  + +S +G+L H+P  
Sbjct: 129 RAPQIAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLPVL 188

Query: 189 -YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLR 241
                   T             +  + + K      +  D        A++ G E +GL 
Sbjct: 189 AMSTDEFFTWTGDHNLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 227

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAISLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             ++       +++   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPREDLALKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223


>gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
 gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
          Length = 246

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG H V AAL NP R + ++  T++AL  LD    LP   P+       + ++V  +A H
Sbjct: 18  YGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVYSDVADLGRMVPSDAPH 73

Query: 112 QGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QG+  E  PL    L         + + ++VLD V DPHN+GAILRSA AF    I+T  
Sbjct: 74  QGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  IGL  ++++ L + I  
Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 256

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 96/268 (35%), Gaps = 18/268 (6%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++ + +  L +N    K ++S   K ++  Q       G   ++  L     K   + +T
Sbjct: 1   MQYNTHKMLGKN--KIKFIRSLELK-KNRQQERLFVAEGPKVIADLLT--KIKAHTIFST 55

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            + L              +  +    + KI   +   Q L         PT +A   +QL
Sbjct: 56  SSKLKEFSSKQAD----NIIEITDSELSKISFLQHPQQVL---AVFPFFPTTEATPQNQL 108

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V DP N+G I+R A  F    I+ ++      +  + +++ G++  +       
Sbjct: 109 ILALDGVQDPGNLGTIIRIADWFGIKNIVCSEDTVDVYNPKVIQASMGSVAQVSVNYCDL 168

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                            L  ++         + K  +++G EGKG+    ++  T    +
Sbjct: 169 KNFIENIAPKVPVYGTCLDGENIYNQT---LSSKGIIVMGNEGKGVSTAIKQLFTHKLLI 225

Query: 255 HMP---GIIKALNVSNAAAVALYITQNH 279
                   I +LNV+ A A+     +  
Sbjct: 226 PNYHPQSAIDSLNVAIATAITCAEFKRQ 253


>gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 230

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD+     +        +++G E  G+  +
Sbjct: 69  SWVQVKTHSHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGISQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 235

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A+R   L + L+ V+ PHN+ A++R+A A     I        S    L+ +A   
Sbjct: 10  CQMMAMRQPDLTICLEEVHKPHNVSAVIRTADAIGIHQI-HAIWPDQSLRTQLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +      Q             SD      Q        +I+G E KG+  +
Sbjct: 69  SWVQVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQ 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 AVALADHDIIIPMAGMVQSLNVSVASALILYEAQRQR 165


>gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
 gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
          Length = 332

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 90/293 (30%), Gaps = 47/293 (16%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-- 90
           +     +++   +        +  +  AL+     +  L+  +   A     A +     
Sbjct: 40  LTEVQLRNKLEPEKGVFIAESIKVIDRALDAGMVPVSVLMTPEWLDAAAPTVARIQKASK 99

Query: 91  --------------------------------FPVKTVPPQTIDKIVGKEAVHQGLALET 118
                                            PV   P + + ++ G       L    
Sbjct: 100 PAPTLRGGVSGGGVSARAASCGGDDAEGSSACTPVFVAPVEELKRLTGFALTRGILCAMR 159

Query: 119 APLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            P LS   +         ++ + +L+ + D  N+GAI RSA A   D ++          
Sbjct: 160 RPKLSSVEELLAGVHPGGARRIAMLEGIVDHTNVGAIFRSAAALGVDAVLVAPTCCDPLY 219

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIK 225
               + + G +  +P+ RI N      +                            +   
Sbjct: 220 RRSVRVSMGTVFQVPWTRIGNDAHDWPRAGLEELHRLGYATAAMALSDDSIPLDDARLAA 279

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +++AL+ G EG GL  +T E       + M   + +LNV+ A+AVA +    
Sbjct: 280 CERLALVFGTEGDGLTARTIEGCDYTVRIPMAHHVDSLNVAAASAVAFWELCR 332


>gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1]
 gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1]
          Length = 232

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S       + SA         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVKVV 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      Q             SD      +        +++G E  G+  +    A 
Sbjct: 75  THPTIGDAVKQLKQQKMQVLATHLSDDAVDFREIDYTLPTCILMGQEKTGITEEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A A+ LY  Q   
Sbjct: 135 RKIVIPMVGMVQSLNVSVACALILYEAQRQR 165


>gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
 gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
          Length = 262

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS                   R++   K +      +     P  + L GVH   A 
Sbjct: 1   MKHISS------------------RDNPAVKALAKLAGTAGKRGSP--VLLDGVHLCQAW 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +       +   +                     +  + +  +   E+      L T 
Sbjct: 41  LQHHGVPDQAIFDVERLSQPDIAALAAAVPDAHCLALDSRLMQSLASVESGQGVAFLVTP 100

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P      +   N  L    D + DP N+G +LR+  A     +      + + SA + +S
Sbjct: 101 PSPEMPAEVDENCVLF---DRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRS 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA      + I    D    +       +  + D  + L +     + A + G EG+G
Sbjct: 158 GQGAHF---ALAIHEHIDLTALLPRLRVPLVATALDGARNLYEGRLPARCAWVFGHEGQG 214

Query: 240 LRPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279
           + P   + A+    +   M   +++LNV  AAA+ L+  +  
Sbjct: 215 VDPVLLDAASHKVCIPHDMA-AVESLNVGAAAAICLFEQRRQ 255


>gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 290

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 104/270 (38%), Gaps = 23/270 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +S+   +         + +  A+          L ++  L  L       
Sbjct: 18  DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76

Query: 89  HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLL 135
                    P+       ++++ G   +H+G        + P+LD           ++ +
Sbjct: 77  TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPSLDELLATAHGGTPARRV 135

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+++ D  N+GA  RSA A   D ++ T + +        + + G +  IP+ R+ + 
Sbjct: 136 VVLENLVDHTNVGAAFRSATALGVDAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSW 195

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------IALILGAEGKGLRPKTQET 247
              +  +   GF    L+         +  +          +A+++G EG GL  +T   
Sbjct: 196 PGDITALQEAGFTVASLALSDDSVSLDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAA 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     + M   + +LNV+ A+AV  + T+
Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|209518723|ref|ZP_03267539.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
 gi|209500837|gb|EEA00877.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
          Length = 289

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 100/261 (38%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  S  L+   +    +  T  A  
Sbjct: 29  KAITSRDNPLYKRLKALAGSTHQQRRGGHALLEGFHLASTYLDVAGQPELCV-VTDGAQR 87

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L +P  + +  + L++  
Sbjct: 88  HDEAQAIVSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPLPERIAENCLVL-- 145

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 146 DGVQDAGNVGSILRSAAAAGIQHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEA--- 202

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +       +   S   + +     +  +A + G EG G+    ++  +    +  PG
Sbjct: 203 DALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQVWRDAVSLRVTIPQPG 262

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV ++     
Sbjct: 263 GMESLNVAAAAAVCVFEQCRQ 283


>gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
 gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
          Length = 242

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 91/257 (35%), Gaps = 23/257 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++  ++K ++    +   + G  ++   L+       Q+L T+             
Sbjct: 6   RLKLLKGLSRK-KNRDDHQLFLVEGYKSILE-LSQTDLVRQQVLVTEGHH--------AL 55

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   +  + +  I   +     LA+   PL       +  S L + LD V DP N+G
Sbjct: 56  DSLPTDIISKKDMANISTLKTPPGYLAVFEMPLKRE----INLSGLTVALDDVKDPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    II +       +    +++  +L  +    ++      ++       
Sbjct: 112 TIIRLCDWFDVKQIICSTETVDVFNPKCVQASMASLGRVQVDYVNL-----EEFLQDASS 166

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
            I  ++ +   + +    D   L++G E  G+  +  +       +   G     ++LNV
Sbjct: 167 KIFTTAMNGVSIYETNLPDHGILVMGNESAGISEEIMKLGN-KISIPQYGSQPSTESLNV 225

Query: 266 SNAAAVALYITQNHFAK 282
           + A AV L   +    K
Sbjct: 226 AMATAVVLGEWRRSTEK 242


>gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 307

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 16/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 89  H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222

Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               +         +   +               K+AL+ GAE  GL+  T   A  +  
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   + +LNV+ A AVA + T  
Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307


>gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 307

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 16/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 89  H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222

Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               +         +   +               K+AL+ GAE  GL+  T   A  +  
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   + +LNV+ A AVA + T  
Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307


>gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
 gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
          Length = 230

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTEMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 198

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 1/162 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAK 178
                 +   R    ++ +D V + HN  AILR+  A     +          E      
Sbjct: 1   MKRFYEVLQKRQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVS 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+     I  +          K        +    +S K   +        L++G E K
Sbjct: 61  MAANRWLFIERVYDREKAIKELKERENLQVVVTWLDESSKDFREIDYTKPTLLVVGNELK 120

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+       A     + M G++++LNVS A  + LY      
Sbjct: 121 GVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQR 162


>gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
 gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004]
 gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038]
 gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
          Length = 219

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A         
Sbjct: 5   RQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   SD      +        +++G E  G+ P+    A 
Sbjct: 64  THPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 251

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 14/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++  + +     G   V   L         +  TK  L R        
Sbjct: 6   KIKYIHSLELK-KNRKEEQAFLAEGYKLVEELL--GHFPCRIVAGTKAWLDRHPHLHAEE 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + +I  ++   + LA+   P+    ++      L + LD V DP N+G
Sbjct: 63  I----FEVSEEELTRISLQKNPQEVLAVFEQPVYEWNINT-AAHSLCLALDDVQDPGNVG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I R A  F  + +  ++  +   +    ++  GA+  + +   +          S    
Sbjct: 118 TIARIADWFGIEHVFCSQGTADIYNPKTVQATMGAIARVQFHYCNLPEFIRSA--SAQDI 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +  + K +  E   +   +I+G EG G+     +  T    +          ++LN
Sbjct: 176 PLFGTFLNGKDIYGENLENHGIIIMGNEGNGISTPIAQCITHRLFIPNYPQGRSTSESLN 235

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+     +  
Sbjct: 236 VAIATAIVCAEFRRR 250


>gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 219

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L   R   L +V+++VN  HN+ AI+R+  A     +       P        ++     
Sbjct: 15  LLDKRQPDLTVVMENVNKAHNLAAIIRTCDAVGIPKVHAVA-LRPEIRTKQNSASGANRW 73

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
               I  S                +   S               AL++GAE +G+     
Sbjct: 74  VDVQIHNSTEDVFSTLRQGGFQIFVAHFSPQATDFRAVDFTKPTALVVGAEWEGISETAI 133

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A    ++ M G++++LNVS A A+ L+  Q    +
Sbjct: 134 SLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQRTE 170


>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 5/265 (1%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NA 77
                ++R  K+ +S ++K +         + GV     A  +     + L   +     
Sbjct: 2   KITSPDNRHVKEARSLSRK-KERGVTGKYLIEGVRLAEEAAASSVSLAYCLYTERVAAQP 60

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
             R   D           V  + +  I   E     + +                  L++
Sbjct: 61  RGRRLLDRLAAAGVDCLEVDDRALATITETEQSQGIVLVANLAPAHWEAVIAAPEPFLLI 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V DP N+G I+R+A A    G++ T          + +   GAL  +P   + +   
Sbjct: 121 VDGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGALFRLPVATVPSAKG 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHM 256
               +           +    P  +   +   IA+++G+E  G RP   + A     + +
Sbjct: 181 LAASLRERDISLAVADARDGVPYFEAPWDRGSIAIVIGSEAHGPRPFWGDLAQLRVRIPL 240

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
              +++LN + AAAV L+    H +
Sbjct: 241 APPVESLNAAVAAAVLLFEAARHRS 265


>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 244

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N    +  + AT +    L  +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADF---LSENHASLFE 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  PT +  + + L++ LD V+DP N+G I
Sbjct: 63  FDCVEASLDDLTKASTLVSNNA----AIAVVEIPTFELPKATGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   +        Q         +
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQTDLPEYLEQANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K             L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TEFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 228

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           R + L + L+ V+  HN+ AI+RSA A  C  +           +   +  +   LE   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAVWPENQKWLTNNTSGGSKNWLETHL 75

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  I +    +++ +          S+      +       A+I+G E  G+  +  + A
Sbjct: 76  HKNIDDAATMMRQHNPNVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISAQALKHA 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS AAA+ L+  Q+   K
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQHQREK 169


>gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 229

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G ++V  AL N   KI  L    + +              ++    Q +D +V +   HQ
Sbjct: 8   GKNSVLDALENN-VKIEMLYVLASKVHEFKHI----KNIKIEVKDKQFLDSLVKE--NHQ 60

Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           G       L   +LD + ++ + +++LDH+ DP+N GAILRSA AF    II   + +  
Sbjct: 61  GYVAVLKSLNFVSLDQMIKSKETILILDHLEDPYNFGAILRSANAFGIKNIIYPIKRAVD 120

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ++ + K +SG   ++ + + ++++  + K      +        + + + +   N+   
Sbjct: 121 INSTVLKVSSGGFVNLRFYKSNSISATIDKLKKQGYWIYSSSLDPTSEDINKISFNNPSV 180

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L++G E KG+   T++ +  + ++   G +++LN S AA +  
Sbjct: 181 LVIGNEKKGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223


>gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 268

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 102/253 (40%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +       LL T   L  L  D +   
Sbjct: 15  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLDGLA 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + + +G       LA  +        + +  ++ + VL+ VND  N+G+
Sbjct: 74  -APFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLGS 132

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A     D +I     +        + + G    +P+ R +N    L  +    F+ 
Sbjct: 133 VFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFRL 192

Query: 210 IGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++ D   P   +       ++IA+++GAEG GL+  T  +A     + M     +LNV
Sbjct: 193 LAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLNV 252

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 253 ATAAALAFYERDR 265


>gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 233

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 8/234 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G ++++ A+ N           K        +  +     VK V    +DK+V    
Sbjct: 4   YICGRNSLADAIKNG-------FIFKEIYLLKPTNDQIFLKQKVKIVSRDFLDKLVRLNH 56

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 LE               +++++LDH+ D +N+G I+R+A  F    II  KR +
Sbjct: 57  QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKRRA 116

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              +    K +SG    + +I ++++  A+ K+    F        +  + +++   N  
Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+ILG EG G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 177 CAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 155

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      NL
Sbjct: 6   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYYENL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +        + +G S   K    +    +   L+ G+E +GL  K +E    M ++ 
Sbjct: 66  EQFVSFQKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGLPDKFREQCDQMLYIP 125

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           MP   +++LN+S + A+ L+      
Sbjct: 126 MPHPQVRSLNLSVSVAIGLFEALRQL 151


>gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 320

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 10/242 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V+AAL+  +  + +L   ++ALAR           PV+ V       +
Sbjct: 70  EEGLFLVEGAQAVTAALHADA--LVELFIGESALARHAQ-LTAGTGVPVRFVTDAAAAAL 126

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                      +  + L    L  +   +L+ V +  NDP N G ++RSA A   D ++ 
Sbjct: 127 SETVTPQ--GLVGVSELPGHRLADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVF 184

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223
                        +S++G+L H+P I  ++    ++++   G Q +  S  + + L+   
Sbjct: 185 VGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVRELRELGCQVLATSGHADRDLDDLA 244

Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-H 279
              +     A + G E +GL   T  +A +   + + G  ++LN++ A+A+ +Y +    
Sbjct: 245 AAGVLAGPTAWVFGNEARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYASARAQ 304

Query: 280 FA 281
            A
Sbjct: 305 RA 306


>gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 224

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV  +  +  +K+     V +           P ++  + ++ L+VLD + DP N+G +
Sbjct: 35  CPVFLLSRKCFEKVS----VQENSQGVILLYSYPVIEISKAAKQLIVLDDIQDPGNLGTM 90

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R   A     I  TK      +  + +S+ G++ H+    +                 +
Sbjct: 91  IRLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRLHVMEKKEILEYLQTENYHVLV 150

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                      +    +K A + G EG G+  +  E A     + + G  ++LNV+ AA 
Sbjct: 151 TTLQRDSVAYTEMQLKEKNAFVFGNEGHGVSKEFLELAEQKIIIPISGQAESLNVAMAAG 210

Query: 271 VALYITQ 277
           + L+ ++
Sbjct: 211 IILFYSR 217


>gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 231

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++R+A A     +                ++        
Sbjct: 15  NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQV-HAIWPDLDMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                      Q             S+      +       A+ILG E  G+ P+    A
Sbjct: 74  IRHDHMDEAQTQFRAQGMQILATNFSEDAVDFREIDYTRPTAIILGNERDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
 gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
          Length = 261

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 10/236 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPF 91
           +   ++S       +  + G + V  AL       KIF      +A              
Sbjct: 4   RPPLRRSAPIEAESDGVIEGRNAVIEALRAGVTIDKIFIAKGETDATLGHIASTAREKGI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V     + +D +    + HQG+    A     T+D +           L++V D ++DP
Sbjct: 64  VVVDADRRKLDGMSRTHS-HQGVIALCAVREYVTVDDILAIAQEKGEKPLIVVCDELSDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA++R+A A    G+I  KR S   +AV+AK+++GA+ H+P  R+ NL  AL+++  
Sbjct: 123 HNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVPNLVAALKELQQ 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            G    G +++    L Q       A+++G+EG G+     E       + M G I
Sbjct: 183 AGVWVFGTAAEGTTSLYQADLKGPAAIVIGSEGDGMGRLVTENCDFTVSIPMFGKI 238


>gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 254

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A L +N    K + S   K +   +       G   V   L         L AT + L  
Sbjct: 2   ASLSKN--KIKYIHSLELK-KIRKEEGVFLAEGPKLVGDLL--GHFPCRFLAATSSWLQE 56

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              D +      V                  Q +              V +  L + LD 
Sbjct: 57  H-PDIDASELVEVSQEDLSR----ASLLKTPQQVLAIFEQPSYTVNPEVVHQSLCLALDD 111

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F  + II ++      +    ++  G +  +     S       
Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259
            + S G   I  +    K + ++  +    +++G EG G+  +         ++      
Sbjct: 168 FIRSLGDTPIFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPEG 227

Query: 260 ---IKALNVSNAAAVALYITQNH 279
               ++LNV+ A AV     +  
Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250


>gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
 gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
          Length = 227

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
 gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
          Length = 181

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           + P+ +  +   +     +A              +     + L+ V DP N+G ++R+A 
Sbjct: 1   MTPEILSLLADSKTPQGIVAEIALEQPELP---DQLQGRFLYLEDVQDPGNVGTMIRTAD 57

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG++ +K  +   S    +S  G+  HIP  ++       +   S         S+
Sbjct: 58  AAGFDGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSE 117

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +     Q  + D+  L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++ 
Sbjct: 118 ASIDYRQLPQTDRFILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMFS 177

Query: 276 TQN 278
            + 
Sbjct: 178 LRK 180


>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
 gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni]
          Length = 338

 Score = 94.5 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 111/299 (37%), Gaps = 66/299 (22%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------------NALARLDWDANLPHP 90
            ++  +  LYG+H V  AL    R I++L                        +  L + 
Sbjct: 21  RTRQSSELLYGIHPVLCALTFRHRDIYRLYVKDTLSNCKDPDNLVEISTFQITEKALKYG 80

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------- 134
            PV  VP + + ++    A HQG+ LE +P    ++  +    L                
Sbjct: 81  IPVTRVPVEKLKELSNSRA-HQGVILEVSPTTIQSISDLSIKNLLFSWNNLSGNLPYAKK 139

Query: 135 -----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                +++LDH+ D  N G ILRSA  F    +I +     S S +++K + GA+E I +
Sbjct: 140 YHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESILF 199

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK--------------------KPLEQEIKNDKI 229
            R+++    ++ + + GF  +G   +S+                          +    +
Sbjct: 200 YRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPL 259

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVALYIT 276
            L LG+E +GL      +   +  +   G               +LNVS AA + LY  
Sbjct: 260 ILALGSESRGLSENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGILLYQL 318


>gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10]
 gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua]
 gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516]
 gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]
 gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1]
 gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92]
 gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10]
 gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 230

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A   
Sbjct: 10  CDMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+ P+
Sbjct: 69  SWVQVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
 gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
          Length = 233

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      S      L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPSTEMYTRLSAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa]
 gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 120/336 (35%), Gaps = 60/336 (17%)

Query: 1   MNLISKKKSEKIFSLKDSHY-AKLRRNHRDYKKMQSFNQKSRHTSQPENLF--------- 50
           + ++   + +KI +        + +    D+++    +   R T +    F         
Sbjct: 217 LEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRWNRQDNWGRKTWKEATEFTVPKIVGEG 276

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPHPFPVKTVP 97
           ++GV  V AAL+   R+ + L   +                               K V 
Sbjct: 277 VFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMAKKIGLSTKEVS 336

Query: 98  PQTIDKIVGKEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
              ++ IV              L +     L   L       L + LD V DP N+GAI+
Sbjct: 337 KHDLNMIVDNRPHQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAII 396

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G++ +G
Sbjct: 397 RSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLG 456

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP-------GI---- 259
            S  SK     E+       L+LG+EG GLRP  + + T +  +          G     
Sbjct: 457 GSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPVDATVGGGDEV 516

Query: 260 -------------------IKALNVSNAAAVALYIT 276
                              +++LNVS AA V L+  
Sbjct: 517 KDEEINLECSSAEFRSFLAVESLNVSVAAGVLLHHL 552


>gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
 gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea]
 gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
          Length = 232

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++R+A A     +                ++        
Sbjct: 15  NRQPDLTLCLDRVHKTNNIAAVIRTADAVGIHQV-HAVWPDIEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    S       +        +ILG E  G+ P+    A
Sbjct: 74  IKHYHMDDAVQAFRAQDMQILATNFSADAVDFREIDYTRPTVIILGNEHDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 270

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +S A++     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRIEPSKGIFIAESPKVISVAMDAGYEPLALLCEQKHITGDAATIIERSG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      +  R ++ ++V+D V D  NIGA
Sbjct: 77  NIPVYTGERELLSTLTGYTLTRGVLCAMRRPKPRCIEEVCRKARRIVVVDGVVDTTNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+  +      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDGPLGKLNDLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                             K+A+++G EG GL  KT   A  +  + M   + +LNV
Sbjct: 197 ALTDDSISIDDPILANEPKLAIVMGTEGDGLSHKTIAEADYVVRIPMSHGVDSLNV 252


>gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 238

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 10/230 (4%)

Query: 52  YGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           YG   +  AL +    KI+  +   + + +L        P P+  VP +        E  
Sbjct: 9   YGFSPLEEALRSGKVEKIWVRVDKMSKVKQLVDRLEKNRPIPLVAVPKEFF-----PEKE 63

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             G        L    +      +++++D V D  N+GAI R++VA S   II     + 
Sbjct: 64  WVGFLPSEIDYLGWE-ELPEIGNMVVIVDGVTDSTNLGAIFRASVALSSPNIILDLHNTG 122

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +  + + + GA       R++    A+ ++   GF  +GL +     +       K+A
Sbjct: 123 SVTPKVVEISRGAALRARVWRLNIK-QAIPRLKENGFSVVGLEAHHGTKVYHLDLTGKVA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++G+E KG+R   +       ++      ++LNV  A ++ALY  +   
Sbjct: 182 LVVGSEDKGIRTTVRTLCDHFGNIPT--DFESLNVHVALSIALYEAKRQR 229


>gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
 gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
          Length = 221

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S       + SA         
Sbjct: 5   RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVKVV 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      Q             S       +        +++G E  G+  +    A 
Sbjct: 64  THPTIGDAVKQLKQQKMQVLATHLSADAVDFREIDYTLPTCILMGQEKTGITEEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A A+ LY  Q   
Sbjct: 124 RQIVIPMVGMVQSLNVSVACALILYEAQRQR 154


>gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
 gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
          Length = 255

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 18/257 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +  ++       G   V+  L  P+ +   L+A  + +          
Sbjct: 6   KVKYIRSLELK-KFRNENNVFVAEGNKLVADML--PAFECELLIAKPSWM-------ATQ 55

Query: 89  HPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P K   V  +   +        Q +            +     +L++ LD + DP N
Sbjct: 56  GDIPAKELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGN 115

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F    I+ +K  +   S    ++  GAL H+             +  S  
Sbjct: 116 LGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLE--TFLQAQSAQ 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262
              +  +    + L ++  +    LI+G EG G+RP  +       ++          ++
Sbjct: 174 AIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSES 233

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A AV     +  
Sbjct: 234 LNVAIATAVVCAEFRRR 250


>gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 307

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 16/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 89  H---------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG +     +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFQLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDAD 222

Query: 200 QKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               +         +   +               K+AL+ GAE  GL+  T   A  +  
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVR 282

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   + +LNV+ A AVA + T  
Sbjct: 283 IEMAHGVDSLNVAGACAVACWATAQ 307


>gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
 gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
          Length = 242

 Score = 94.5 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 21/248 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +QS ++K +   +     + G  T+   +      I ++ +   A  +L       
Sbjct: 6   KIKILQSLDKK-KFRQKYNLFLVEGNKTIKE-IPASRYVINEVFSVNPAELKL------- 56

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                + V    + +I   +          A       + +    + ++LD + DP N+G
Sbjct: 57  KNVEAQAVSESELRRISFLQNP----KDSVAVCQLLPTEILPEPPVQLILDGIQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    II ++      +  + +++ G+   +                +    
Sbjct: 113 TIIRLADWFGIGQIICSEDTVDIYNPKVIQASMGSFLRVNVFYADIKEYLTDSPIA---- 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
               +    + L      ++  L+ G EG G+RP+     T    +   G     ++LNV
Sbjct: 169 -TIGTDMEGENLYNFKFPERFNLVFGNEGNGIRPEIDNLLTDKITIPRFGKSKSTESLNV 227

Query: 266 SNAAAVAL 273
           S A  + L
Sbjct: 228 SMATGIIL 235


>gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma
           proteobacterium EB000-45B06]
 gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine
           bacterium 562]
          Length = 240

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 6/240 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQT 100
           ++ EN    G H++ + L +   KI ++      ++            +  P +      
Sbjct: 2   NKKENDLRVGFHSIESILEHNPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +      +    L +    L          + L+++LD++ DP N+GA +RSA     D
Sbjct: 62  QEPEAYISS---DLEMNFKDLKLFLDSDEAQNPLILILDNIIDPRNLGACIRSAAVIGVD 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K +    +++  K + G  E I    ++NL + L+ +        GLS  + K  
Sbjct: 119 AMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASKSH 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +  A+I+GAE  G+R KT E      +L    + K+ NVS A  + L       
Sbjct: 179 TDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238


>gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 210

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 1/159 (0%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSAS 181
              +   R   L++ +D V + HN  AILR+  A     +          E       A+
Sbjct: 16  FYEVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAA 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                I  +          K        +    +S K   +        L++G E KG+ 
Sbjct: 76  NRWLFIERVYDREKAIKEIKERENLQVVVTWLDESSKDFREINYTKPTLLVVGNELKGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 A     + M G++++LNVS A  + LY      
Sbjct: 136 EDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQR 174


>gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 244

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+ Q+ AT      L+ +A   + 
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKQVFATAAF---LEQNAGTLNR 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 63  FDCVEASLDELTKASTLVSNNA----AIAVVEIPSVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +    +   +             +
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQVSLVDLPSYLEHAKLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K          +  L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TDFAAEGILLMGSESHGVREAAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 216

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ + V+ PHN+ AI+R+  A     + +        +       S       +
Sbjct: 18  RQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPTFSQVSQGSD-KWTFLH 76

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 T                 ++              A++LGAE  G+  +      
Sbjct: 77  THPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQPTAILLGAEKWGVSEEAANLVD 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAAV L+  Q   
Sbjct: 137 GNIIIPMLGMVQSLNVSVAAAVILFEAQRQR 167


>gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 270

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 81/236 (34%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     ++R               +S A+N     +  L   K+             
Sbjct: 17  FSTLTEAQLRNRIEPSKGIFITESPKVISVAINAGYEPLALLCERKHITGDAATIIERCG 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + +  + G       L     P      +  R ++ ++V+D V D  NIGA
Sbjct: 77  NIPVYTGKRELLATLTGYTLTRGVLCAMRRPKPHSIEEICREARRIVVIDGVVDATNIGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T       +    + + G++  +P+  +      L  +       
Sbjct: 137 IFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDTTLSKLHDLGFRTAAM 196

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                             K+A+I+G EG GL  +T   A  +  + M   + +LNV
Sbjct: 197 ALTDDSISIDNPLLATEPKLAIIMGTEGDGLSYETIAEADYVVRIPMSHDVDSLNV 252


>gi|167763027|ref|ZP_02435154.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
 gi|167699367|gb|EDS15946.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
          Length = 253

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V   L     +   L+AT   L+     A   
Sbjct: 7   RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATSEWLSAHRHLAVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +    +   Q LA+   P  S  +  +  S L + LD V DP N+G
Sbjct: 63  ---DVTEVSEEELSRASLLKTPQQVLAVFEQPDESVDVSVISRS-LCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          +     + + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYISLPELIASLEDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + +       ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQPLSAYGLIVMGNEGNGIGDEVKRLINRKLYIPNYPAERETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 258

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 7/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   +       + R   +     + G    + A     R    L+  + A A      
Sbjct: 7   RNPKVRAWAELKTR-RGRLEQGRFLVEGAREAARARAAGIRPQAWLVWPERAGAEEAALL 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV  +    + K+  +E     + +          D     + ++V   +  P 
Sbjct: 66  ADA---PVYELSEAAMRKVSYRENPPALIGVF-ERPARRLEDLPTRPRRVLVAVEIEKPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LRSA A   D ++        E+  + ++++G +  +P   + +   A   +   
Sbjct: 122 NLGAMLRSADASGADAVLVVGEAVDPENPNVIRASTGTVFTLPLAAVDHD-AARAWLRER 180

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +  +  +++   +   +   A ++GAE +GL P   E A     + M G+  +LN 
Sbjct: 181 GLQIVAAAPRARRVYWEADLSGPTAFVVGAEDRGLPPGWLEAADLAVRIPMEGVADSLNA 240

Query: 266 SNAAAVALYI-TQNHF 280
           S +AA+ LY   +   
Sbjct: 241 SVSAALLLYEGLRRQR 256


>gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 265

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTI 101
                    G   V  AL   SR + +L  T  AL R    A        PV  V  + +
Sbjct: 23  EATGRFLAEGPQAVREAL-ARSRTVLELFGTPTALDRHADLAAAAAGADVPVSEVTDEAL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +    A    +A+     +       R  +L+ VL  + DP N G +LR+A A     
Sbjct: 82  AALAETVAPQGLVAVCQHLDVPLATALSRGPRLVGVLAGIRDPGNAGTVLRTADAAGAAA 141

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++         +    +S++G+L H+  +R  +    +    + G   +  +   +  L+
Sbjct: 142 VVFAGEAVDPYNGKCVRSSAGSLFHVDVVRERDPAAVVDAARAAGLVVLAATGYGEADLD 201

Query: 222 QE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                       A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY + 
Sbjct: 202 DLADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAAAVCLYASA 261

Query: 278 N-HF 280
               
Sbjct: 262 RAQR 265


>gi|260772956|ref|ZP_05881872.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
 gi|260612095|gb|EEX37298.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
          Length = 244

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + +  +  + AT   L     +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LTHSAFNVQHVFATAEFLNSHAENVAS--- 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               T    ++D++  K +         A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 63  ---YTCTEASLDELT-KASTLVSNNAAIAVVEIPKIEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +    +       Q         +
Sbjct: 119 IRVADWYGIKHIVASVDCADPYNPKTISATMGSFGRVQVSLVDLPHYLAQANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S           + +  L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHT-----TSFSAQGILLMGSESHGIRESAAQWVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor
           salsuginis DSM 16511]
 gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor
           salsuginis DSM 16511]
          Length = 233

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 5/225 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V  AL     ++ ++   K  +  L  D    +   +  +      + + +  
Sbjct: 7   IIYGKQVVLHALRRHPEQVHKIYIAKKGV--LPQDLFEKYGDKITFIEN-RWAQQLSRGG 63

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQGL  E       +L  V+    ++VLD + D  NIGAI+RSA A   DGI+ T    
Sbjct: 64  NHQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATG--I 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +       S          +      +          +  +S   +P+E+++ + K 
Sbjct: 122 GQLNFSAVTRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEGEPIEEKLFDRKR 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+LG+E +G+  K +E       + M     +LNVS AAA+ ++
Sbjct: 182 TLVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226


>gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 255

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK +   +       G   V   L         L AT   L          
Sbjct: 8   KIKYIHSLEQK-KIRKEERVFLAEGPKLVGDLLE--YFPCRFLAATSLWLQSHPNIYA-- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +        Q +              +    L + LD V DP N+G
Sbjct: 63  --GEIAEVSQEELSR-ASLLKTPQQVLAILEQPQYTLTPDIARHSLCLALDDVQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + II ++      +    ++  G +  +     S       +       
Sbjct: 120 TIIRLADWFGIEDIICSQNTVDVYNPKTVQATMGGIARVRVHYTSLPDFIRSQGKEIPVF 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
              L   +   + ++  +    +++G EG G+  + +       ++          ++LN
Sbjct: 180 GTFLDGQN---MYEQPLSANGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGQETSESLN 236

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 237 VAIATAVICAEFRRQ 251


>gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
 gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
          Length = 239

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 79/255 (30%), Gaps = 34/255 (13%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +   +       G   V   L                         + 
Sbjct: 15  KIKLIHSLETK-KGREKVGLFVAEGPKVVKDLLQAGF---------------------IA 52

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                     + I  +      H    L    L +     +  +QL++ LD V DP N+G
Sbjct: 53  KEVFEDIEDIKEISFL-----QHPQSMLGVFHLPTNGFKELSMNQLVLALDGVQDPGNLG 107

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I  +   +   +  + ++  G++  +    +     A          
Sbjct: 108 TIIRVADWFGIKDIYCSHDTADCWNPKVVQATMGSIARVQLHYVDLNKMAES---LPADY 164

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264
            I  +    + + ++  +    +++G EGKG+ P  +       ++          ++LN
Sbjct: 165 PIYATLLDGENIYKQELSHHGMIVMGNEGKGISPLLRTKINRKLYIPSYSSDGNTAESLN 224

Query: 265 VSNAAAVALYITQNH 279
           V+ A ++     +  
Sbjct: 225 VAIATSIVCAEFRRR 239


>gi|319902170|ref|YP_004161898.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319417201|gb|ADV44312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 253

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++    +     G   V   L +       L+AT   +     + +LP
Sbjct: 7   RIKYIHSLELK-KNRKNDKVFLAEGPKLVGDLLEH--FPCQFLIATSEWI---SQNEDLP 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  +  + + +    +   Q LA+   P  +     +    L + LD + DP N+G
Sbjct: 61  TD-DVTIITEEELSRASLLKTPQQVLAVFRQPEDTADFSVIS-HSLCLALDDIQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +     + +         A          + T   + + +    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYN----PKTVQATMGGIARVKLHYTPLPELICALKGI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGEDIYCQPLSSYGLIVMGNEGNGIGKEVEQLINRRLYIPNYPADRQTSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
 gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
          Length = 289

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 20/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80
             +K+     + R   +     + G  +V  A+      +  L                 
Sbjct: 15  RVRKVADLANR-RTRERFGRFLIEGPQSVREAVMWMPGAVRDLYVQAADGPDGPRIAGET 73

Query: 81  --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                + +  H   V       + +I         +    A   +     +     +   
Sbjct: 74  LTSIVERSQEHRIYVHPASEAVMRRISPDCQGIAAVGDADAVRATVQGTQLPEKPFVAAF 133

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---SNL 195
             V  P N G ++R+A A  CD ++         +  + ++ +G+L HIP + +      
Sbjct: 134 WQVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFF 193

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETAT 249
             A +K+       +  +   +     E   D+       A+I G E +GL P       
Sbjct: 194 GWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGRCD 253

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + + G  ++LN++ +AA+ L
Sbjct: 254 DIVRIPLYGKAESLNLATSAAIML 277


>gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 231 GTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|313675661|ref|YP_004053657.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942359|gb|ADR21549.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 246

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 92/251 (36%), Gaps = 13/251 (5%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L +N+   K ++S   K +   + E   + G       LN+   K+  L+ +++ L+R  
Sbjct: 2   LTKNN--TKFIKSLQLK-KFRQKEELFIVEGAKNTLELLNSSY-KLKYLIVSEDFLSRHQ 57

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            + N         V  + +  +   ++    LA+              ++   +VLD + 
Sbjct: 58  KEIN-SSEIEPIIVKEKELSALGAFQSNTDALAVV----HEKAPSKYDSNGFDLVLDDIR 112

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R A  +    II ++  +   +         A     +       D  + +
Sbjct: 113 DPGNLGTIIRLADWYGIKNIICSETTAEFYN----PKVISASMGSIFRTNLYRRDLKEFL 168

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                + I  +    K + Q        L++G E  G++ +     +    +   G  ++
Sbjct: 169 GKNQNRKIYGALLEGKNVHQVKFEADGLLVIGNESHGIQKELIPLISEKVTIPKIGQAES 228

Query: 263 LNVSNAAAVAL 273
           LN + A A+  
Sbjct: 229 LNAAMATAIIC 239


>gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 283

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  N +    ++           +  AL         LLA         + A  P
Sbjct: 17  DYTQLKDVNLRRSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAASP 76

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                    P PV       ++++VG       +A           + ++++  +++L+ 
Sbjct: 77  ATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPNPREILKHASRVLILED 136

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GA +RSA A   D I+ T   +        + + G +  +P+ R+    D   
Sbjct: 137 LVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPAL 196

Query: 201 KMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +         +                 + K+ALI GAE  GL+P+T   A  +  +
Sbjct: 197 FHEAGFELAALALREDSQDLRDYAMELGAAPSRKVALIAGAERDGLKPQTIARADKVVRI 256

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   + +LNV+ A A+A + T  + 
Sbjct: 257 AMAHGVDSLNVAGAIAIACWATATNR 282


>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
 gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 320

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 102/261 (39%), Gaps = 28/261 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100
                L+GV     AL    R + +LL                        PV     Q 
Sbjct: 45  QRLERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQK 104

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153
           +D + G + VHQG+ +E + L     D            QL +VL+ + DP N+GA++RS
Sbjct: 105 LDALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRS 163

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-----------RISNLTDALQKM 202
           A     D +IT++R S   + V++K+++GA+E +              +       +  +
Sbjct: 164 AYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTV 223

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPG 258
              G +    S        + I +    L+LG EG GL      T   +  +     +P 
Sbjct: 224 GCPGPEISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPP 283

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNVS A  + L+   + 
Sbjct: 284 GLESLNVSVATGILLHSICSQ 304


>gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
 gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
          Length = 409

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 11/235 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96
           SR         + G + V  AL       +  + A      RLD    L       V  V
Sbjct: 150 SRADRGEPEELVVGRNAVVEALRAGVPASVLYVAAGTEYDERLDEARRLAPRAGVAVADV 209

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAI 150
               +D++ G  A HQGLAL   P      D            LL+ LD V DP N+GA+
Sbjct: 210 ARGDLDRLCG-SAPHQGLALSVPPFRYAHPDDLLARAQEAPPGLLVALDGVTDPRNLGAV 268

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQT 209
           +RSA AF   G++  +R +   +A   K+++GA   +P  R +NL  A      +  F  
Sbjct: 269 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQAGLFVV 328

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +       E E+ +D + L++G+EG+GL     E       + M G +++LN
Sbjct: 329 GLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESLN 383


>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 259

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 23/253 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S ++K ++  Q       G   +   +       F              +    
Sbjct: 23  QIKLITSLSKK-KYREQHGFFIAEGPKVIDEFIAEGLELHF----------HFTTEIVAN 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V    + KI      +  LA+   P  +  +       + +VLD V DP N+G
Sbjct: 72  ETHVYHQVTSGELKKISKLTNPNTSLAVFKIPKKNAAI----TKGVRVVLDGVQDPGNLG 127

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    +I +K      +  + ++  G+L  +    +   +   +        
Sbjct: 128 TIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGSLARVVISYVDIKSLLQETTLPIYGG 187

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
            +   S   + +E++       L++G EG G+  +     T    +   G     ++LNV
Sbjct: 188 VLEGVSLYSEKIEEDSY-----LVVGNEGNGISEEIIAILTHKITIPQYGASQKTESLNV 242

Query: 266 SNAAAVALYITQN 278
           + A A+ L     
Sbjct: 243 ATATAILLSEVMR 255


>gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 278

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 104/270 (38%), Gaps = 16/270 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
                   ++  N   R          +   G + V   L +  R    LL T + L +L
Sbjct: 9   PADPRLDDLRDLNNSDRRPDLPGGRGLVIAEGTYVVGRMLLSRFRP-HVLLGTDSRLQQL 67

Query: 82  DWDA--------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
             +A                       + +++G  +    LA    P      + V  ++
Sbjct: 68  RREATAEGWDADERAGDAVYLRTTKDVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGAR 127

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+VL+ VNDP N+GAI R+  A   DG++            + + + G +  +P+  + 
Sbjct: 128 TLVVLEGVNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLP 187

Query: 194 NLTDALQKM----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 Q+        GF+TI L+  ++ PL + +  +K+A +LGAEG GL         
Sbjct: 188 GTPTTWQRSLDDLRERGFRTIALTPAAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACD 247

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A + M     +LNV+ AAAVA Y     
Sbjct: 248 VRAAIPMTDGTDSLNVATAAAVAFYERARR 277


>gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99]
 gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99]
          Length = 227

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 261

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 91/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 6   MEIIESKENKLIKSLKKLKQKK-------------------YRESENKFLAEGYK----F 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 43  LDYNYSPEIIIIREDIYQSNFYFEKLNKFSCKRIVVTRKIFEELSSQENSQGV----IIL 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + +++
Sbjct: 99  YTKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRAS 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +  P  +    +K A+I G EG G+
Sbjct: 159 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNGI 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 219 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 255


>gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 256

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 1   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 37

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 38  LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKEIVVTRKIFEELSSQENSQG----IIIL 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 94  YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +     +    +K A+I G EG G+
Sbjct: 154 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGI 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 214 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 250


>gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908]
 gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018]
 gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017]
          Length = 227

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VVYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Mocydia crocea]
          Length = 239

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A+R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A   
Sbjct: 10  HQVSAMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +          +         ++      Q        +ILG E  G+  +
Sbjct: 69  HWVKVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAGISKQ 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
           pisum]
          Length = 386

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-- 75
             Y  L+       +     +  +   Q  ++ L G   +  ALN   +      + K  
Sbjct: 75  PSYLILKETCPLLSQAMMEIKNKKRRQQNSSILLEGKRLIQDALNAGVKPKQIFFSQKRV 134

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
             +L   +   +LP    +    P  + ++  +    QG+                   +
Sbjct: 135 LESLCLPEELRDLPASSTIFYKAPYKMIQLFSETETSQGIMGIFEIPTIDHRARKNAFPI 194

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++ D++ +P N+GA+LR+  A     +I  K  +      + ++  GA   +  I   +
Sbjct: 195 TVICDNIREPGNLGAVLRTVTAVGASQVILMKGCTNLWGDKVLRAGCGAHFRMKIISDVS 254

Query: 195 LTDALQKMHSWGFQTIGLSSDS-------------------------KKPLEQEIKNDKI 229
            +                  +                                  K   +
Sbjct: 255 WSFLENIKGQVCLADNNYVGNIDYSNINENTNVNVFRKTAPIELPIAPYYEIDYCKITPL 314

Query: 230 ALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            LI+G E  GL  +     +       ++ +   I++LN + A  +  +  +  
Sbjct: 315 ILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKKQ 368


>gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
 gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
          Length = 216

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 1/167 (0%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +           L   R   L +V+D+VN PHN+ AI+R+  +   + I           
Sbjct: 1   MINPERFHKIRRLLEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNRPSI-R 59

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
                +          +  S    A     +         S +             A+++
Sbjct: 60  KKQKTAGGSTRWVQLSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVM 119

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GAE  G    T        H+ M G+ ++LNVS AAAV L+  Q   
Sbjct: 120 GAEKLGPSSDTISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQR 166


>gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
 gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
          Length = 196

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 57/152 (37%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RS  AF  D +      +P        SAS       
Sbjct: 19  HRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLYYTDTPFPVLGRKTSASARKWVES 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    + + KPL         A+I+G E  G+  +    A
Sbjct: 79  VRHRDRQELETSLRAQNMQILATTFTPTAKPLRTWDFTRPTAIIMGNEHSGVNEELISMA 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS A+A+ L       
Sbjct: 139 DGELYIPMYGMIQSFNVSVASAIILSEACRQR 170


>gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 169

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + LL++LD + DPHN+G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P
Sbjct: 18  QEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVP 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++NL+  L K+   GF T G   +     +   K  KIALI+G EGKG+    ++  
Sbjct: 78  IARVTNLSQTLDKLKDEGFWTFGTDMNGTPCHKWNTK-GKIALIIGNEGKGISSNIKKQV 136

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             M  + M G +++LN S AAA+ +Y    + 
Sbjct: 137 DEMITIPMNGHVQSLNASVAAAILMYEVFLNR 168


>gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 263

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A        + 
Sbjct: 12  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFAQSFWPQAPEE 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  +     D+I   E+  +        +       V+     +VLD V D
Sbjct: 72  WVQAAGKVVV--LADALFDEISALESPARMG----YVMDWDAGVQVQPGVATVVLDRVQD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    I+  K  +   S  + ++  GA              ++  + 
Sbjct: 126 AGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVDDVQ 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     + +       A  +G EG+G+     E A+    +  PG  ++L
Sbjct: 182 GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMASHRISIAQPGGEESL 241

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 242 NVAAAAAICLHA 253


>gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 266

 Score = 94.1 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 94/252 (37%), Gaps = 12/252 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLL--ATKNALARLDWDANLPHPFPVK 94
           Q S    +   +++ G   V   L ++P+R  F        +       +       P +
Sbjct: 15  QNSDQDKKDGKIYVVGNKPVRELLLDDPARVDFVAFRVGRHDKGVEEILELCRVAKVPYR 74

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
           +V  + +D +      HQG+A   A L    L  +          L++ LD V D  N+G
Sbjct: 75  SVSAKDLDFM--YRGNHQGVAARCAALSYVPLLTMLETAPDAPLPLIIALDQVQDTGNVG 132

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            + R+  A    G+I  +       A   +S++GAL  +P  +  NL  AL+   ++ + 
Sbjct: 133 VLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKLPVAKAGNLAAALKDCANYDYT 192

Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                +        +        L+LG E KG+RP   +       +       +LNV+ 
Sbjct: 193 LYYAQTGEGSLNAYEAELKTPAVLVLGNEEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQ 252

Query: 268 AAAVALYITQNH 279
           A AV +      
Sbjct: 253 AGAVLVSEFSRR 264


>gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
 gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
          Length = 229

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  +N+ AI+R+A A     I      +     +   SA         
Sbjct: 16  RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI-HAVWPTEQMQMLGHTSAGARNWVDVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +       A+ILG+E  G+  K    A 
Sbjct: 75  THKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium
           castaneum]
 gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum]
          Length = 403

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 24/283 (8%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K++ N R    +    +  +   + + + L G   +  AL +     + L + K+ + 
Sbjct: 118 YTKMKDNDRRISSILVDVKSKKEQDKKDLILLEGKRLIRDALQSGCALKYILFSRKDEIE 177

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L           +  +P + +         + G+            + V    + ++ D
Sbjct: 178 YLKPFLPKV-GAQLYKMPYKEMQMWSD-LTTNPGIMGLFKTPPVEAFEPVNPLPITVICD 235

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ +P N+G ILR   A  C  +I TK         + + A GA   +   +        
Sbjct: 236 NIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRGAVGAHFKLKIEKKEWDEIGD 295

Query: 200 QKMHSWGFQTIGLS------------------SDSKKPLEQEIKNDKIALILGAEGKGLR 241
           +      F                                    ++ + +++G E  G+ 
Sbjct: 296 EVDPDAKFFIADNRIVSSEDTGGDLGELLGKIPIVPYFGVDFRTSNHLVVVVGGETLGVS 355

Query: 242 PKTQETA----TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + E A     +  ++ +   + +LNV  A  +  +  +   
Sbjct: 356 KNSYELALRSNGARLNIPLSNDVDSLNVGAALGIIAFEIKKQL 398


>gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 257

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 82/262 (31%), Gaps = 17/262 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDAN 86
              K ++S  QK ++          G   VS  L         +     A  +  +    
Sbjct: 5   AKIKYIRSLEQK-KNRRNEGVFVAEGPKIVSDFLK----TQTAVFIACTARWKAENTYWQ 59

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                    V  + + KI   +  H    L           A    +L + LD + DP N
Sbjct: 60  CLETTETAIVTDEELKKISFLQ--HPQEVLAVFRQAENKTIAPDVRRLYLALDGIQDPGN 117

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I  +   +   +    +++ G+L HI           L       
Sbjct: 118 LGTIIRIADWFGIEHIYCSIDTADIYNPKTVQASMGSLAHIGISYTDIP---LLIDSLPT 174

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKA 262
              I  +    K +  E       LI+G EG G+    +   +    +           +
Sbjct: 175 DYPIYGTLLDGKDIYNEPLTPHGLLIMGNEGNGISAPVKSRISRRLLIPNYPQGRKTADS 234

Query: 263 LNVSNAAAVALYITQNH--FAK 282
           LNV+ A A+A    +      K
Sbjct: 235 LNVAIATAIACSEFRRRQTINK 256


>gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 244

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 81/249 (32%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N    +  + AT + L+           
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LFNSDLVVKNVFATADFLSENHASLIEFDC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V   A         A +  P ++      L++ LD V+DP N+G I
Sbjct: 66  VEASLDDLTKASTLVSNNA-------AIAVVEIPKVELPEAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   +        Q         +
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHISQTDLPAYLEQANLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K             L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 179 EGESVHK-----TDFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNMRRQ 242


>gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145]
 gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145]
          Length = 230

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V++ V+  HN+ A++R+A A     +      S         +         
Sbjct: 15  FRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEM-HAIWLSSKMRVSGGTALGSQNWVNV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +          Q         +   SD      +       A++LG E  G   +  + A
Sbjct: 74  HHHSQLSPAVEQIKQQGMQVVVTHLSDQAVDFREIDYTQPTAILLGQEKHGATEEALKIA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS A AV LY  Q    +
Sbjct: 134 DHHVKIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 167


>gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 268

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 99/253 (39%), Gaps = 6/253 (2%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            ++D+   +L     D++ ++  +++         +   G   V   L +    +  L+ 
Sbjct: 6   EVRDADDPRL----ADFRDLKRADRRPDRPGGRGLVIAEGTVVVRRLLASTY-PVRALIG 60

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
                  L  D       P   V  + + +++G       LA        P  D +  ++
Sbjct: 61  VARRFEELADDLA-DVDVPYYVVDAELMAQVIGFHLNRGVLATADRVAHPPAADLLAGAR 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + VL+ V D  N+G+I R+A       ++     +        + + G + H+P+  + 
Sbjct: 120 SVAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSMGTVLHVPFAPLP 179

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L + +  +   GFQ I L+   +  L     + ++AL++G+EG GL       A     
Sbjct: 180 WLDEGVDLLRRNGFQLIALTPAGECRLADTRVSGRVALLVGSEGPGLTDAAMAAADLRVR 239

Query: 254 LHMPGIIKALNVS 266
           + M   I +LNV+
Sbjct: 240 IPMHRGIDSLNVA 252


>gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
 gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 7/237 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
           +  G  +V A + +  R + +L+  +    +              PV+  P + ID+   
Sbjct: 3   WFEGALSVKAVMMSGRRPVIKLVIDQKKKDKDTAFILRQAAQRQIPVERWPREKIDQQAA 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               H G+          ++          + VL+ + DP N+G   R+  A  C G++ 
Sbjct: 63  -GRTHGGILALAGDRNYQSVQECLDAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTGVLM 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R   +    + KS++GA E + +    +L  A+++    G                  
Sbjct: 122 GSRDWQTAQPTIVKSSAGASEQLAWCLCEDLGAAVRQCRQAGCVLYCAQRSDAIDYFDAD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVALYITQNHF 280
            N  I L +G E +GL     E +     +     +++ LN ++A A   +      
Sbjct: 182 FNQPIVLAIGGELRGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAAISFEVVRQR 238


>gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 242

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 21/248 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +QS ++K +   +     + G   +   L N + +I  + +  +       D    
Sbjct: 6   KVKILQSLDKK-KFRQKYNLFLVEGNKIIKE-LKNTNIEIESVYSVNSDGIEFLADVL-- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P+     + +  +       +      A    PT     ++ + +VLD + DP N+G
Sbjct: 62  --VPITEKELKKVSFL-------KTPKDSLAVCYLPTPKITEDNNINLVLDGLQDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I+ +       +  + ++  G+   +  +         ++       
Sbjct: 113 TIIRLADWFGIEQIVCSTDTVDVYNPKVIQATMGSFTRVNVVYSDI-----EQFLLNSPA 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
               +    + L +     K  L+LG EG G+RP  +        +   G     ++LNV
Sbjct: 168 ENIGTDMEGENLYKTNFPKKFNLVLGNEGNGMRPSVERLMKRNITIPRFGNHRATESLNV 227

Query: 266 SNAAAVAL 273
           S AA + L
Sbjct: 228 SMAAGIIL 235


>gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 271

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 4/239 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + +           G   +  A          LL+ K      D    L
Sbjct: 16  RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDEL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   PV  V P+  +++ G       LA      L    D +R ++ +++++ VND  NI
Sbjct: 76  PA--PVYAVSPELAERVTGYHVHRGALASMQRKPLPTAADLLRRTRRVVIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MHSW 205
           GAI RSA A   D ++ +   +        K + GA+  +PY R  +      +    + 
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARPDSWPRVWSRSARPAS 193

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D      +    D++AL+LGAEG  L  +    A     + M   + +LN
Sbjct: 194 RSSPDPRREDPPPRRGRPHTMDRVALMLGAEGDALSTQALVAADEWVRIPMSHGVDSLN 252


>gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 236

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ P+N+ AI+R+A A     +      +         SA         
Sbjct: 16  RQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKV-HAVWQAEQLRLHSHTSAGSRNWVELE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    S+      +       A+ILG E  G+ P+    A 
Sbjct: 75  THANITDAVHAMKAQGMQVLATNLSERAVDFREIDYTKPTAIILGGEKHGITPEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591]
 gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 397

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 153 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFRDALRWMAANRKAYHVVEDD 212

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+               L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 213 ELVRASGTE-HHGGVCFLIKKRQGLDVAAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 271

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 272 HFGVKGVLV-NDASQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 330

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 331 KGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 390

Query: 276 TQNH 279
               
Sbjct: 391 WWRQ 394


>gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 230

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +   R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A   
Sbjct: 10  CEMLTTRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHTHIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666]
 gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666]
          Length = 260

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 10/254 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    +     +      
Sbjct: 13  SRDNTLIKELRKLSQDSTAYRKQGRVWLEGDHLCRAALARGKKPTLAIF--SESFWPSAP 70

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       +P   + +I G E+  +   +   P  S       +    ++LD V D
Sbjct: 71  VEWSRAAIKNIVIPDALLPEISGLESPARMGFVLELPAASGLEAGAAS----VILDRVQD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    II  K  +   S  + ++  GA                  + 
Sbjct: 127 AGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHF----ALQLVEGVEPAALA 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  SS     L Q+      A  +G EG+G+       +     +  PG  ++L
Sbjct: 183 ALTVPIVVTSSHQGSFLHQQPLPRPCAWAMGHEGQGVSDDLMARSALKVRIDQPGGEESL 242

Query: 264 NVSNAAAVALYITQ 277
           NV+ AAA+ LY + 
Sbjct: 243 NVAAAAAICLYASA 256


>gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 235

 Score = 93.8 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ ++  HN+ A++R+  A     +      S         +A        +
Sbjct: 16  RQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDV-HAVWKSEEAEVRGGSAAGSQNWIDVH 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                               +   SD+     +       A+ILG E  G   +  E A 
Sbjct: 75  NYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS A +V LY  Q   A
Sbjct: 135 QHIVIPMVGMVQSLNVSVACSVVLYEAQRQRA 166


>gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
 gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
          Length = 274

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 26/275 (9%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K+   +  +++ Q+         +     ++GV  ++ A+ +       L      L+  
Sbjct: 3   KVTARNALFQQWQALLTNRTKRQRTGEFLIHGVRPITLAVEHGWPLRTLLYPAGQRLSAW 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                     P+  V P+ + ++  +E+   + +A+                 L +  D 
Sbjct: 63  ARRLIDDSGVPLAEVAPELLWELGERESETPELIAVGALLPDDLDRLRPGPGFLGVAFDR 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRISNL 195
             +P NIG ++RSA AF   G+I T   +        ++++G+L        P       
Sbjct: 123 PGNPGNIGTLVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRRPSPDDVLD 182

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q+      + +G       P+          L++G E  G+  + +E    +  + 
Sbjct: 183 WVGAQRDGGLPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARWREMCDEVVRIP 242

Query: 256 MPG----------IIKALNVSNAAAVALYITQNHF 280
           M G                      + LY      
Sbjct: 243 MGGAASSLNAASAGT----------LVLYEAARQR 267


>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
          Length = 225

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A        
Sbjct: 1   MRQPDLTVCLENVHKPHNISAVIRTADAVGISQI-HAIWCQNSTKSLSAAAAGSNHWVKV 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +          +         +       Q        +ILG E  G+  +    A
Sbjct: 60  KTHATIEKAISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTGISKQALALA 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 120 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 151


>gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 28/279 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K++++ + +S    +   L + G   V  A+      +  +  T     R    A+  
Sbjct: 24  RVKQVRALSGRS-ARLRHAQLLVEGPQGVREAVRCSPDAVRDVYLTPATAQRYAEIADAA 82

Query: 89  H--PFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                 V     + +  +             H     E    L       R S L+ VL 
Sbjct: 83  RAAGIRVHLGTHEVLAAMSPDAQGVLAVVRTHTPTLDEALGALDGPDGGRRRSLLVAVLA 142

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A   D ++         +  + +S +G+L H+P +    L D +
Sbjct: 143 TVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGSLFHVPVVSGVPLADVV 202

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE-----------------IKNDKIALILGAEGKGLRP 242
             +H  G   +         L+                         A + G E  GL  
Sbjct: 203 DAVHERGLTVLAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTAWVFGNEAWGLPE 262

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
           K +E A ++  + + G  ++LN++ AA V LY +     
Sbjct: 263 KDRELADAVVRVPIRGRAESLNLATAATVCLYASSRAQR 301


>gi|290769952|gb|ADD61721.1| putative protein [uncultured organism]
          Length = 257

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V   L     +   L+AT   L+     A   
Sbjct: 7   RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHRHLAVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +    +   Q LA+   P     +  +  S L + LD V DP N+G
Sbjct: 63  ---DVTEVSEEELSRASLLKTPQQVLAVFEQPDEFVDVSVISRS-LCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +     + +    ++  G +  +     S      + + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHYTSLP----ELIASLEDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  +    +++G EG G+  + +       ++          ++LN
Sbjct: 175 PVYGTFLDGENMYTQPLSAYGLIVMGNEGNGIGDEVERLINRKLYIPNYPAERETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
          Length = 240

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 9/228 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            ++       G   +  A          LLA +      D    L     V  V  +T+ 
Sbjct: 2   EAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL--DVEVFVVS-ETLA 58

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           + V    VH+G           +   +  ++ L+V + + D  N+GAI+R A     DG+
Sbjct: 59  EQVTGFHVHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVGAIIRCAAGIGWDGV 118

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMHSWGFQTIGLSSDS 216
           +   R +        K++ G +  +P+ R+ +               +    +    +  
Sbjct: 119 LLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFTVAAMELSGDSVTLD 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +   +      K+AL++G EG GL       A  +  + M G + +LN
Sbjct: 179 EFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDSLN 226


>gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 243

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 18/232 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H +  A++         + + + + + +    +        +  + +
Sbjct: 24  YREKEGLFIIEGEHLIDEAIDKNIVVEIFEIGSSSKILKYERTTLIT-----YELAKKVL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D    +             +     + +     ++ LD + DP NIG I+R   +F  D 
Sbjct: 79  DAQSPQS---------VFAVCKIVKNNIVLGDKIVFLDDLQDPGNIGTIIRLCKSFDIDT 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   +     +    +++ G+      +++    +  + M         L       L+
Sbjct: 130 LI--VKNFDIYNPKCLRASQGSFFKTNIVQVDKYDELSKLMSKDFSIISTLLDKEATELK 187

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 K  L+LG EG G+     + +    ++ +    ++LNV+  AA+ L
Sbjct: 188 NFTFPKKSVLVLGNEGNGISQNAIDLSKHKVYIPIS--FESLNVATCAAIIL 237


>gi|329962850|ref|ZP_08300735.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328529407|gb|EGF56320.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 253

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++    +     G   V   L         L+AT   L++        
Sbjct: 7   RIKYIHSLELK-KNRKADKVFLAEGPKLVGDLL--GHFPCCFLVATSEWLSQNHHLPL-- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + +    +   Q LA+   P        +  S L + LD V DP N+G
Sbjct: 62  --TDVTEVSEEELSRASLLKTPQQVLAVFKQPEDETDASVIGRS-LCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +     + +         A          + T     + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDAYN----PKTVQATMGGIARVKLHYTPLPALIGSLTDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +    + +  +  ++   +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGENIYGQPLSENGLIVMGNEGNGIGEEVRQLINRKLYIPNYPANRETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 316

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 39/293 (13%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNP----------SRKIFQLLA 73
           ++    +++      +    S+       G   V  A+             +  +  +  
Sbjct: 13  SNPRADRVRDVAALTRRSTRSKRGLFRAEGPQNVREAVRAALDDDAGPSRWAPALDAVYV 72

Query: 74  TKNALARLDWDANLP------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           T+  L R    A             ++ V P+ +  +       QG+            D
Sbjct: 73  TRQELERHPGIAADLEALESRRGVFLRMVTPEVLGAMTD-AVTPQGMLAVCRIPEVTLQD 131

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--------- 178
           A+ +++L+ VL  V DP N G ++R+A A   D ++ ++      +    +         
Sbjct: 132 ALADTRLVCVLARVQDPGNAGTVVRAADAAGADAVVLSEGSVDPYNPKAVRSTAGSLFHL 191

Query: 179 ----------SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                       + A E    +  ++               +  +  +     +   +  
Sbjct: 192 PVLTGVDLVSFVAAARERSVQVLAADGHARASVDELADAALLHWAGTAPHSEHEVRLDGP 251

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
            A + G E +GL     E A     + + G  ++LNV  AA V LY +     
Sbjct: 252 TAWLFGNEAQGLSDAELELADLPVAVPLYGRAESLNVGTAATVCLYASARAQR 304


>gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
 gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
          Length = 243

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V A L    R + +++     K+                ++      ID 
Sbjct: 2   ETYIVEGNISVKAVLQAKRRVVQRIVVDAKKKDKDTSYILRLAKKQGITIQAAQRAEIDT 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +  +   H G+          +++ +  + +  L +++ V DP N G +LR+  A  CDG
Sbjct: 62  LA-QGKTHGGILAYCGERRYQSIEDIISKENVFLALVEGVEDPFNFGYVLRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR   S    + ++++GA E+I      ++   +Q+M       +         L 
Sbjct: 121 IIVGKRNWTSAVNTVTRASAGASEYINIFVSEDMEATIQQMKKQQITFLCAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278
                 K  + +G E +GL       +     +      +  N    + + A+  +    
Sbjct: 181 DYHFPKKCCIAIGGEMRGLSKAVMAQSDQNLFIPYRSEFR--NAMTAAASTAIFAFELVR 238

Query: 279 HFA 281
              
Sbjct: 239 QKN 241


>gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
 gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
          Length = 233

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 84/233 (36%), Gaps = 5/233 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       LN   +K  +++  K    +  +         ++    +   + + +  
Sbjct: 2   IIYGKQLFLHLLNRHPQKFIRIILAKEC-EKEIFKKIAATGVKIERADAKK-AQALARGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E        L +V++ + + +L  + D  NIGAI+RSA A   D +I      
Sbjct: 60  NHQGFLAEVEEFSFGDLASVKDDKFVPILYGLTDVGNIGAIMRSAYALGADSVIVVANN- 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      AS    +   +  +    ++          I  +S      ++     K 
Sbjct: 119 --LNMAGVVRASSGAAYELNVVKAADGLSVLNELKQSGFEIYAASAGGTSFKELELGAKN 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           AL++G E +G+  +  +       + M     +LNVS A A+      N   K
Sbjct: 177 ALVMGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAILCDGILNGRNK 229


>gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 298

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 30/278 (10%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP--------------SRKIFQ 70
           H   +++++           +     + G      AL                  R + Q
Sbjct: 10  HPRAERVRAVAALAGRSARRRTGTFLVEGPQACREALRAHLGEGPTAAAGQWRAGRVLTQ 69

Query: 71  LLATKNALARLDWDANLPHPFP-----------VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +  +   + R    A L                V+    + +  +         +A+   
Sbjct: 70  VYVSGGLVDRDPALAELVARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARM 129

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P        +  ++L  VL  V DP N G ++R+A A   D ++ T       +  + +S
Sbjct: 130 PEPQAVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRS 189

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAE 236
            +G+L H+P +       A+    + G Q           L+           A + G E
Sbjct: 190 TAGSLFHLPVVTAVPAEAAVAAARAAGLQVWAADGYGADRLDALAPGVVAAPTAWLFGNE 249

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +GL       A     + + G  ++LNV  AA V LY
Sbjct: 250 AQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 223

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++++V+ PHN+ AILR+A A                +       S    ++  
Sbjct: 16  RQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPTYNETSGGSEKWVYLRV 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                      K   +      L SD             +A++LGAE  G+ P+    A 
Sbjct: 76  HPDIATAVQHLKERGFLVYAAHL-SDEAVDYRAVDYTRPVAVLLGAEKWGVSPEAAALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAAV L+  Q   
Sbjct: 135 RHIVIPMMGMVQSLNVSVAAAVILFEAQRQR 165


>gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 271

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 6/242 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +           +  AL    R     L  +  L  L       
Sbjct: 15  DYVSLTDVALRRRAEPERGLYIAESEKVIRRALGAGHRP-RSFLMAERWLTDLADVVADA 73

Query: 89  --HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
             H  PV       I+++ G       LA    P L      V +++ ++VL+ + D  N
Sbjct: 74  ESHDVPVFVGEHDVIERLTGFHLHRGALASMQRPGLPEVASLVADARRIVVLEDIVDHTN 133

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+ RSA A   D ++ T R +        + + G +  +P+ RI      +  + S G
Sbjct: 134 VGAVFRSAAALGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQSHG 193

Query: 207 FQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F               + +     K+A++LGAEG GL   T   A  +  + M G + +L
Sbjct: 194 FTVAALALSDDAVALDVLEAAPPTKVAVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSL 253

Query: 264 NV 265
           NV
Sbjct: 254 NV 255


>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 253

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 13/235 (5%)

Query: 44  SQPENLFL-YGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPP 98
            +        GVH +  AL       + L+      +    ++              V  
Sbjct: 18  KKSGQFIFFEGVHALEEALLANYIPDYVLIKDVDILEKKFFKVKIFEIFLERLKFLVVKE 77

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             I ++   E+   G+                     + LD + DP N+G ILRS++AF 
Sbjct: 78  DAIKRLSS-ESTPTGIISVGNLPKEKDFGPFPW----VYLDKIQDPGNLGTILRSSLAFG 132

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
           C GI  ++      +  + +S++GA   +P+ + +          S    +    +    
Sbjct: 133 CGGIFLSEDSCNIYNPKVIRSSAGAFFKVPFRKRNFSDIVRDMDTSLRVFSFSPRAKEPF 192

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L     + +  L+ G EG+G+  + +  +    ++     +++LNV+    + L
Sbjct: 193 FLHN--YDGRCLLVFGNEGRGISSEIESKSYKRVYIPTQ-NVESLNVAMCVNIVL 244


>gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC31A08]
          Length = 240

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 6/240 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQT 100
           ++ EN    G H++ + L +   KI ++      ++            +  P +      
Sbjct: 2   NKKENDLRVGFHSIESILEHSPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +      +    L +    L          + L+++LD++ DP N+GA +RSA     D
Sbjct: 62  QEPEAYISS---DLEMNFKDLKLFLDSDKAQNPLILILDNIIDPRNLGACIRSAAVIGVD 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K +    +++  K + G  E I    ++NL + L+ +        GLS  + K  
Sbjct: 119 AMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASKSH 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +  A+I+GAE  G+R KT E      +L    + K+ NVS A  + L       
Sbjct: 179 TDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238


>gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84]
 gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84]
          Length = 276

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 10/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPSRKI--FQLLATKNALA 79
            +     + +   ++   T +       G   +  ++ A       +    LL    A  
Sbjct: 12  PDDPRIAEFRDIRER-DLTGRESRFIAEGTVVLRLLAGAHAAGGDFVAEKVLLLRNRAAG 70

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
             +     P   P+       +D IVG      V           +   L  +    L++
Sbjct: 71  LEEIITAFPPDVPIYVADGSVLDGIVGFHLHRGVLALGRRTADTGMDAFLGRLPKRPLVL 130

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V   +++  NIG++ R+A AF  D ++  +           + + G++  +PY R     
Sbjct: 131 VGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPYRREFRDV 190

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D L  +   GF    LS   K  +      D IAL++G EG+GL  +   T      +  
Sbjct: 191 DLLTALAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGEGLPQEILSTF-GSVRIPQ 249

Query: 257 PGIIKALNVSNAAAVALYITQ 277
              + +LNV+ A+ +AL+   
Sbjct: 250 APGLDSLNVATASGIALFEMA 270


>gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 278

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 109/273 (39%), Gaps = 8/273 (2%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            K++     R         +            + L LYG + V A  +   + + +L   
Sbjct: 5   WKNARRPSSRPPRATPLPPREGGTPPPPGRGNDELRLYGWNAVQALFDKRPQALRKLYLV 64

Query: 75  KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEA----VHQGLALETAPLLSPTLDA 128
           ++ + R+       + +    + V    ++K+         V   L     PL     D 
Sbjct: 65  ESLIPRMQPVLKWCVANRVGYRVVEEGDLNKLAATTHHEGLVADVLRAPVVPLAQWLEDL 124

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L + LD V +PHN GAILRSA  F    ++     + + S   A+ A G  E +P
Sbjct: 125 GEGPALALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARVAEGGAESVP 184

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +++ +   A+ ++ + GF       +  + + +     ++  ++GAEG+G+        
Sbjct: 185 LVQLPDNAQAMAQLRAAGFGLAATLVEGGEDVFRASLPARLVYVMGAEGEGMDRSLASEC 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
                +   G +++LNV++A AV L  + ++ H
Sbjct: 245 DLQVSIPGSGAVESLNVASATAVLLAQWASRRH 277


>gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 157

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  + L +VL +   P N G I R+  A   +  +            L ++      ++ 
Sbjct: 1   MTEAILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVK 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    + D        G + IG +        +        L+ G+E  G+        
Sbjct: 61  LMYHLTINDFCDYQQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKC 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280
               ++ M    +++LN+S + A+ L+  +   
Sbjct: 121 DDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153


>gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium
           G37]
 gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 242

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 14/247 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +   Q       GV     A+NN   ++   L   +   +             +     
Sbjct: 2   KKPRQQSCLF---GVKAFEEAINN---QVHIKLVNISIRHKKLIPLIEAKKINFQIHSTN 55

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
             +         + +A+     L   LD        +    L++LD + DP+N GAILR+
Sbjct: 56  WFNNQYRDINHQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
            +A   DGII  K      +  + K++ G++ +   ++++NL+  + K+   GF T+  +
Sbjct: 116 CLASEVDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVST 175

Query: 214 SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            D         K D  K  LI+G E +G+     + A     + M   I +LNVS A  +
Sbjct: 176 LDPIWKPIDYRKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGI 235

Query: 272 ALYITQN 278
            L+  +N
Sbjct: 236 ILFAWKN 242


>gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 233

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 8/234 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G ++++ A+ N           K        +  +     VK V    +DK+V    
Sbjct: 4   YICGRNSLADAIKNG-------FIFKEIYLLKPTNDQIFLKQKVKIVSRDFLDKLVSLNH 56

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 LE               +++++LDH+ D +N+G I+R+A  F    II  K+ +
Sbjct: 57  QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              +    K +SG    + +I ++++  A+ K+    F        +  + +++   N  
Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+ILG E  G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 177 CAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 253

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++    +     G   V   L     +   L+AT   L+     +   
Sbjct: 7   RIKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHKHLSVE- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +    +   Q LA+   P  +     +  S L + LD V DP N+G
Sbjct: 63  ---DITEVSEEELSRASLLKTPQQVLAVFEQPEEAMDASVISRS-LCLALDDVQDPGNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +       +         A          + T   + + S    
Sbjct: 119 TIIRLADWFGIEHIFCSPNTVDVYN----PKTVQATMGGIARVKLHYTSLPELIGSLKDI 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            +  +      +  +  +    +++G EG G+  + ++      ++          ++LN
Sbjct: 175 PVYGTFLDGANMYTQPLSAHGLIVMGNEGNGIGNEVEQLINRKLYIPNYPSERETSESLN 234

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 235 VAIATAVVCAEFRRQ 249


>gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
 gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
          Length = 227

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 8/227 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTIDKIVG 106
            ++G   +   L +   +I +    K    +               +  V  +   + + 
Sbjct: 2   IVFGKQVILHLLKHHPSQILEFYLLKEIDKKTFSLLQAHQQKYQSALLRVDAKK-AQAMA 60

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           K   HQG   +  P  S  L  +++   L+VL  ++D  N+GA+ RS      DG+I  K
Sbjct: 61  KGGNHQGWLAKVLPPKSSALGVLKSLDKLLVLCGLSDVGNVGALFRSVACLGFDGVIMDK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               +        AS    +     +      + +           +    + + Q +  
Sbjct: 121 ----ALPFEGLARASMGALYDVPFCVCPNPLDILQGLKDVRVHCYGAHIEGQNVRQVVFK 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +A+ LG+EG GL PK      ++ ++ M G I +LNVS A A+ +
Sbjct: 177 PPLAIFLGSEGAGLAPKLVRRMDTLVNIGMEGKIDSLNVSVAGAILM 223


>gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 243

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 86/249 (34%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   QK ++  Q     + G   V   LN+P   +  + AT   +          + 
Sbjct: 8   KLIRQLGQK-KYRKQYNQYLVQGEKNVLELLNSPLNVVN-IFATNEFINAYQGKYPQANF 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V   A         A +  P     + + L++ LD V+DP N+G I
Sbjct: 66  IEADEETLTKASTLVSNNA-------AIAIVDMPKAALPQANGLILALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+T+   + + +     +  G+   +   ++                 +
Sbjct: 119 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPDYLQSLNLPVYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K             L++G+E  G+R    +  T+   +   G  ++LNV+ A  
Sbjct: 179 DGQSVHK-----TQFTGSGVLLMGSESHGIRETCAKLVTNKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNFKRQ 242


>gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 233

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 97/234 (41%), Gaps = 8/234 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G ++++ A+ N        L         +    L     +  V    +DK+V    
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLRP-----TNDQIFLKQKVKI--VSRDFLDKLVSLNH 56

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 LE               +++++LDH+ D +N+G I+R+A  F    II  K+ +
Sbjct: 57  QGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRA 116

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              +    K +SG    + +I ++++  A+ K+    F        +  + +++   N  
Sbjct: 117 AKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQFNYP 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+ILG E  G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 177 CAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
 gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
          Length = 231

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++R+A A     I                ++        
Sbjct: 15  NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    S       +       A+ILG E  G+  +    A
Sbjct: 74  IKHYHMHDAEAAFRAQGMQILATNFSKEAVDFREIDYTRPTAIILGNEHDGVSAEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1]
 gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 227

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 256

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 90/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 1   MEIIESKENKLIKSLKKLKQKK-------------------YRDSESKFLAEGYK----F 37

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 38  LDYNYSPETIVIREDIFQSNFYFEKINKFTCKKIVVIRKVFEELSSQENSQG----IIIL 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 94  YNKKTNDLKSLSNNLIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +  P  +    +K A+I G EG G+
Sbjct: 154 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAIPYNKIKLKEKNAVIFGNEGNGI 213

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 214 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 250


>gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 261

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 6   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 43  LDYNYSPEMIIVREDIFQSNFYFEKINKFSCKEIVVTRKIFEELSSQENSQG----IIIL 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 99  YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +     +    +K A+I G EG G+
Sbjct: 159 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGI 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 219 SDDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 255


>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
          Length = 400

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 103/316 (32%), Gaps = 50/316 (15%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            KK  ++I   + S   + R +  +Y KM            P   +++G ++V +AL   
Sbjct: 83  KKKYYDRIKQEESSKREQFRSHRSEYTKMHPLQG---LKPNPLVDYVFGTNSVISALTAK 139

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ------------ 112
            R+ F  L     L          +    + V    ++        +             
Sbjct: 140 KREYFVKLHHYGPLNTQIQSLCSKNNIQTEEVDKHRLNLYTNYAVHNNVVLECKPLQPPE 199

Query: 113 -------------------GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
                                            +  + + L + LD V DPHN+GAI+RS
Sbjct: 200 LSHLGLVNHEACTFDKSEIDYDQAVNTREKFMTNDNKKNPLGIYLDEVVDPHNVGAIIRS 259

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D ++ + +     S V++K +SG +E +P    +      +K    G      S
Sbjct: 260 AYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLPIFTTAKPLQFFEKSKQDGGWMFVTS 319

Query: 214 SDSKKPLEQEIKND---------KIALILGAEGKGLRPKTQETATSMAHLHM-------P 257
             S       +  +          + L++G EG G+R      +     +          
Sbjct: 320 HMSISQKGNHLTMNELSGMLNELPVVLVVGNEGNGVRTNLLNRSDFTVEIPFGRDPTEGR 379

Query: 258 GIIKALNVSNAAAVAL 273
             I +LNVS A A+ +
Sbjct: 380 NTIDSLNVSVATALLI 395


>gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75]
          Length = 227

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52]
          Length = 227

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RS+     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVI--LDFT 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223


>gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes]
          Length = 287

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 87/282 (30%), Gaps = 26/282 (9%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +     ++   +  +++ Q+        ++     + GV  +S A+ +       L   +
Sbjct: 8   RTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQ 67

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQ 133
             L++   +           + P  + ++ G++       +    + +  LD +      
Sbjct: 68  RELSKWARELLRTVRTEQIAMAPDLLMEL-GEKNEAPPEVVAVVEMPADDLDRIPVREDF 126

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188
           L ++ D    P NIG+I+RSA A    G+I     +        +S++G+L       +P
Sbjct: 127 LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVP 186

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                      ++        +G        +          L++G E  GL    +   
Sbjct: 187 SPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246

Query: 249 TSMAHLHMPGI---------IKALNVSNAAAVALYITQNHFA 281
                + M G                    A+ LY       
Sbjct: 247 DYTVSIPMAGSASSLNAANAA--------TAI-LYEAVRQRI 279


>gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
 gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
          Length = 244

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 7/241 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
              F+ G+H V  A+        QLL  +N       +    +      V  + + +I  
Sbjct: 2   RKDFVIGIHPVINAIKEGIE-FKQLLIARNKKLPFIEEFLQKNKDKRSLVVYKNLSEIER 60

Query: 107 KEAVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                QG+ +              L+ +++ ++L+    + D  NIGA+ R+A A    G
Sbjct: 61  LFPNSQGIVMFIKRFEYADEEETVLNVIKSKKVLLAFSGIMDVRNIGAVARTAQASGLVG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPL 220
            I   ++   +    A  AS        +   +      K       ++           
Sbjct: 121 GIILPKHRSLDITPAAIKASTGSLLSIPVVRLSNLRYFVKDLKRRGVSVIGVEKRGSVRY 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    +  I  + G+E K L            ++ M     +LN+S A+++ LY      
Sbjct: 181 DMLKYDLPICCVFGSESKSLSDVFLRDLDQNVYIPMSNDFNSLNLSVASSILLYEIFRQK 240

Query: 281 A 281
            
Sbjct: 241 N 241


>gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
 gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
          Length = 290

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 23/280 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            LI+ +++  +   +  H  + RR         +   +             G+   S  L
Sbjct: 22  ELITSRRNPLVGRFRALHQPRGRREQGLLLLEGTHLLEEALRL--------GLRP-SQVL 72

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            +P          ++ L      A L  P           + ++   A           L
Sbjct: 73  ASPGWIER----HRSLLEGHPRMAALLQPVA---------EPVLEAVATTAHPDGVVLTL 119

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             P   A      ++ LD + DP N+G ++R+A+A   + +  ++   P +  VL  SA 
Sbjct: 120 PWPEPPACERVDFVLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAG 179

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            AL  +P  R+  L   L+   + G Q +        P  Q        L+LG EG GL 
Sbjct: 180 AALA-LPCRRLEQLLPRLESARTGGVQVVASVVAGGIPYWQLDWTLPTVLLLGNEGAGLA 238

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           P+    ++    +   G +++LNV+ AAA  L        
Sbjct: 239 PELLAASSHQVTIPHSGAVESLNVAVAAAPLLLERWRQLT 278


>gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus]
 gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
           norvegicus]
          Length = 418

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 89/315 (28%), Gaps = 54/315 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKACPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ 133
           +  L  D        +  V  + I            + +   P       P      +  
Sbjct: 152 IKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETQLHHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-------- 185
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA          
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNV 269

Query: 186 -------HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------- 227
                  H+P      + D                 D          +            
Sbjct: 270 EWETVPNHLPPDTRVYVADNCGLYAQVQMSNKTGDRDWACDRRFLKFHKNEVDLDTKARK 329

Query: 228 ------------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265
                               AL++G E  G+  ++ + A         + +   + +LN 
Sbjct: 330 DWLPKLEVQSYDLDWTEAPAALVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNS 389

Query: 266 SNAAAVALYITQNHF 280
           + AA++ L+  +   
Sbjct: 390 AMAASILLFEGKRQL 404


>gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 217

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++R+A A     I                ++        
Sbjct: 4   NRQPDLTLCLDKVHKTNNIAAVIRTADAVGIHEI-HAVWPEIEMRVSGNTASGSQQWVKS 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                      +             S++     +       A+ILG E  G+ P+   +A
Sbjct: 63  KAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGNERDGVSPEGIASA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A A+ +Y  Q   
Sbjct: 123 DQHVIIPMIGMVQSLNVSVAGALIMYEAQRQR 154


>gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
 gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
          Length = 153

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A +    +            L ++      ++      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATTTQLHLVGPLGFEISDRYLKRAGLDYWPYVDLKYHDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +        + IG +        +     K  L+ G E  GL P   E   +   + 
Sbjct: 64  DAFVSYHQKQEGRWIGFTKRGTYNYIKFQFQPKDWLLFGCETTGLPPHVLEACQAKVFIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S +AA+ L+  +   
Sbjct: 124 MTQPGVRSLNLSVSAALGLFEARRQL 149


>gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680]
 gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 5/240 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + +           G   +  A +        LL+ K      D    L
Sbjct: 16  RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDEL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   PV  V P+  +++ G       LA      L    + +  ++ +++++ VND  NI
Sbjct: 76  PA--PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTADELLATARRVVIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAGF 193

Query: 208 QTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             + L+ D K     E    K D++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 NLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSLN 253


>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 262

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 9/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S    ++H  Q       G   +   L  P+ +   L+ T+  +  L     
Sbjct: 14  HAEVKLIKSLQL-TKHRKQSNLFIAEGEKLIGEML--PAYRCQLLVGTEELVKPLLGRCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    L       +          Q  ++LD V DP N
Sbjct: 71  ESIAEAVILPDPKQIERVSGLKSPRPLL---ALCEIPAVEAPQALQQPTLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205
           +G +LR+        ++ T+  +   +  + ++  GAL  +   R ++    L     + 
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGALARVQVYRYTDRAALLTMLKKTE 187

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263
                     +     +        L+LG EG G+        +    +  P     ++L
Sbjct: 188 IPVIGTFIDGAPLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDNHCESL 247

Query: 264 NVSNAAAVALYITQ 277
           NV+ A A+ +    
Sbjct: 248 NVAVAGAIVMAHLM 261


>gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
 gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
          Length = 565

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 18/284 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            + EK               + D   +   + K+    +     +YGV+   A       
Sbjct: 285 PRKEKYQVWNKELPPSEAGANPDRSTL-KLSNKADPNERK----IYGVNASRAFFEQRPS 339

Query: 67  KIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET----- 118
            I +   T+    +   +              V  + +++I  +   H+G+ L       
Sbjct: 340 DIIRAYFTEAVARQHFNELMKFLASEKLAYHLVTSEDMERIT-ESTHHEGVCLLVRDPGA 398

Query: 119 ---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +  T         ++ L+ + +PHNIGAILR A  F    I+  +  S + S  
Sbjct: 399 ESFFHWIETTPPPAEEPHCILALEDLGNPHNIGAILRVAAHFGVSSIVV-RDASLARSGA 457

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             ++A G  EH+  +   + +  L      GF  +  SS     L       ++ L++G 
Sbjct: 458 ALRTAEGGGEHVRLLEADDFSRMLAACRREGFTVVSTSSHEGTSLFAAPLPARVVLLIGQ 517

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E  GL    QE +     +     +++LNVS AA + L     +
Sbjct: 518 ESTGLSSSLQEGSDLKISIPGTKNVESLNVSVAAGILLAEYWRN 561


>gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6]
 gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           CMCP6]
          Length = 228

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +      +     +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                +   SDS     Q       A+ILG+E  G+  + +  A 
Sbjct: 75  THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A AV LY  Q   
Sbjct: 135 QDIMIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 201

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 60/151 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL++++DPHN+ AILRS  AF   G+          S   + S S        
Sbjct: 21  RQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPSLANSSSGSAKKWIDLT 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   S + +P+         A+ILG E +G+ P  +    
Sbjct: 81  RHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGNEHRGMDPDVKIHVP 140

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G++++LNVS AAA  LY      
Sbjct: 141 DEIYIPMFGMVQSLNVSVAAATILYEAMRQR 171


>gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
 gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
          Length = 228

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+  A   + +                +        
Sbjct: 14  QHRQPDLTVCMESVHKPHNLAAVVRTCDAVGVNNV-HAVWSIRPTKVSGGTATGSQNWVK 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +      +             SD+             A+++G E  G+  +    
Sbjct: 73  VHSHDNIAAAIKELKAQGMQVLATNLSDTAVDFRDIDYTKPTAILMGQEKTGISAEALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A A  LY  Q   
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVATATILYEAQRQR 165


>gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 252

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +   + +     G       L         L AT + L          
Sbjct: 6   KIKYIHSLELK-KTRKEEQVFLAEGPKLTGDLL--GHFPCRFLAATSSWLQAHPDIQAN- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   Q LA+   P  + + D VR S L + LD + DP N+G
Sbjct: 62  ---EIAEVSQEELSRASLQKTPQQVLAVFEQPQYTLSPDFVRQS-LCLALDDIQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + II ++      +    ++  G +  +     S          +    
Sbjct: 118 TIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAP--- 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +    + + ++  +    +++G EG G+  + +       ++          ++LN
Sbjct: 175 -VFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLN 233

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 234 VAIATAVICAEFRRQ 248


>gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 228

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +      +     +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                +   SDS     Q       A+ILG+E  G+  + +  A 
Sbjct: 75  THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A AV LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
 gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
          Length = 178

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E   +  A + G EG G+     + A     + M    ++LNV+ AA + L+      
Sbjct: 116 YNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQR 175

Query: 281 A 281
           A
Sbjct: 176 A 176


>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana]
 gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana]
 gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 350

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 52/185 (28%), Gaps = 6/185 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V     + ++ +         +  E        ++    S  L+V    +  +   A  
Sbjct: 120 EVHLSSREVLEAVSPH------MMEERTDRFRRVVENRSYSVCLVVEGLSDFGNISAAFR 173

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
            +         + +   S   +     S             +                  
Sbjct: 174 SADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATT 233

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                   +     +   A+++G EG+G+  +  E +     + M G++ + NVS AA +
Sbjct: 234 HLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSIPMNGMVDSFNVSVAAGI 293

Query: 272 ALYIT 276
            ++  
Sbjct: 294 LMHHA 298


>gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114]
 gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114]
          Length = 229

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  +N+ AI+R+A A     I      +     +   SA         
Sbjct: 16  RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI-HAVWPTEQMQMLGHTSAGARNWVDVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +       A+ILG+E  G+  K    A 
Sbjct: 75  THKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 283

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 16/253 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K++ S  QK ++  +       G+  V+         +  +      ++      +  
Sbjct: 43  TIKRITSLGQK-KYRQREGVFVAEGIKVVN---ELLLSSLELVELHTEDVSAFAKALSPQ 98

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V    P  + K+   +   +      A    P   A+  S L +VLD V DP N+G
Sbjct: 99  DQSKVNETTPAELKKLTFLKTAQK----AVATFKMPEAIAIDRSGLTVVLDDVRDPGNLG 154

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    ++ +K      +  + ++  G+L  +  I             S   +
Sbjct: 155 TIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGSLTRVSIIYTDI-----DTYLSNEDR 209

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
            +  +    + +       +  +++G E  G+    +E  T    +   G     ++LNV
Sbjct: 210 PVFGTFMDGENIYAASLPQEGVIVMGNEANGISTSIEELVTKRIAIPRFGITQATESLNV 269

Query: 266 SNAAAVALYITQN 278
           + A A+ L   + 
Sbjct: 270 ATATAICLSEFKR 282


>gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51]
          Length = 227

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVVMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCAITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 251

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 18/252 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++       R  ++       G   +   L     K+ ++ A +                
Sbjct: 7   QLVRALADKRGRTEHGLFVAEGEKLIGE-LRGSHLKVRKIFALEGVF----------AGP 55

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V+TV P+ ++++                            +L + LD V +P N+G I+
Sbjct: 56  EVETVAPRDMERLS-LLKTAANSLAIVETPRYGLDMRSLAGRLTLALDDVQNPGNLGTIV 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  F    I+ ++  +   +  + ++  GA+  +                +       
Sbjct: 115 RLADWFGIADIVCSEASADCFNPKVVQATMGAILRVRVHYTDLGAFLHDAGAAGLPVYGT 174

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSN 267
                 + +      ++  +++G EG+G+        T    +          ++LNV+ 
Sbjct: 175 FLE--GENIYGTTLTEEGVVVMGNEGRGISQAAARAVTHKLFIPPYPTDRRGSESLNVAM 232

Query: 268 AAAVALYITQNH 279
           A  +     +  
Sbjct: 233 ATGIVCSEFRRR 244


>gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 157

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  + L +VL +   P N G I R+  A   +  +            L ++      H+ 
Sbjct: 1   MTEAILRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPHVK 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    + D        G + IG S        +        L+ G+E  G+        
Sbjct: 61  LMYHLTIDDFCAYQQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKC 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280
               ++ M    +++LN+S + A+ L+  +   
Sbjct: 121 DDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQL 153


>gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1]
          Length = 234

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 84/225 (37%), Gaps = 5/225 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG      AL      +  +   K  +                    +   + + K  
Sbjct: 8   IIYGKQVCLYALEKHPETVSTVYVAKKGILPQKLFHQFHDKIKFLE---EKWAQSMSKGG 64

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQGL LE + L  P+L  V+    L++LD + D  NIGAI+RSA A   D +I T    
Sbjct: 65  NHQGLLLEISELEQPSLSDVKREDFLVILDGLTDVGNIGAIVRSAYALGADAVIATG--V 122

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +       S          +      +          +  ++     ++      K 
Sbjct: 123 KQLNFEAIARTSSGALLDMPFLLIPNILDVCNELHQVGFKLYGAAMEGDAVQLMEFERKR 182

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ALILG+EGKGL  K Q     +  + M     +LNVS AAA+ ++
Sbjct: 183 ALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAILIH 227


>gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 299

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 27/281 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +   ++   +  +++  +         +     + GV  ++ A+ +  +    L     +
Sbjct: 2   ARTIRVSTRNATFQQWHALLTNRTKRQRAGEFVVQGVRPITLAVEHGWQVRALLYPAGQS 61

Query: 78  LARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLL 135
           L+R   D  +         V P+ + ++ GK+     L                  + L+
Sbjct: 62  LSRWSRDLLDRISGASPVAVSPELLGELGGKDEEPPELLAVVGLPEDRLQRIPHSANMLV 121

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           M  D    P NIG+++RSA AF   G++ T   +        ++ +G+L  +P +R+ + 
Sbjct: 122 MAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTGSLFTVPVVRVPSH 181

Query: 196 -----TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                     +      + +G     +  +          +++G E +GL    +++   
Sbjct: 182 RAVLDWADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTIIVVGNETRGLSTAWRQSCDR 241

Query: 251 MAHLHMPGI----------IKALNVSNAAAVALYITQNHFA 281
              + + G                      V LY       
Sbjct: 242 TVRIPITGAASSLNAAAAAT----------VVLYEAARQRT 272


>gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 228

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +      +     +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV-HAVWPTEQMKTLKNTSAGARNWVEVD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                +   SDS     Q       A+ILG+E  G+  + +  A 
Sbjct: 75  THDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A AV LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 219

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ PHN+ AI+R+A A     I      +P+    L+ +A         
Sbjct: 5   RQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQI-HAIWPTPAMYTRLSSAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   SD      +        +++G E  G+  +    A 
Sbjct: 64  THSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEALAMAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 KDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Conomelus anceps]
 gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Delphacidae sp.]
          Length = 239

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A        
Sbjct: 15  MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S          +         ++      Q   N    +ILG E  G+  +    A
Sbjct: 74  RTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 230

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTQMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD+     +        +++G E  G+  +
Sbjct: 69  SWVQVKTHTHISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212]
 gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212]
          Length = 105

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +     +G + ++ + + Q      +AL++GAEG+G+R  T+E    +  + M G + 
Sbjct: 31  QQNHNIWVVGTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVS 90

Query: 262 ALNVSNAAAVALYIT 276
           +LNVS A  V L+  
Sbjct: 91  SLNVSVATGVCLFEI 105


>gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
          Length = 255

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 18/257 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +  ++       G   V+  L  P+ +   L+A  + +          
Sbjct: 6   KVKYIHSLELK-KFRNENNVFVAEGNKLVADML--PAFECELLIAKPSWM-------ATQ 55

Query: 89  HPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P K   V  +   +        Q +            +     +L++ LD + DP N
Sbjct: 56  GDIPAKELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGN 115

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F    I+ +K  +   S    ++  GAL H+             +  S  
Sbjct: 116 LGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLE--TFLQAQSAQ 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262
              +  +    + L ++  +    LI+G EG G+RP  +       ++          ++
Sbjct: 174 AIPLYGTFLGGENLYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSES 233

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A AV     +  
Sbjct: 234 LNVAIATAVVCAEFRRR 250


>gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
          Length = 203

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  A + G EG G+     + A     + M    ++LNV+ AA + L+      A
Sbjct: 145 LCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 201


>gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695]
 gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 227

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHLLNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA             ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGM--GGVILDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
 gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
          Length = 484

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 117/370 (31%), Gaps = 100/370 (27%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---------------- 49
                K   ++    AK  + HR   K +   ++SR     +                  
Sbjct: 102 SLPEPKRPRIQADERAKTIKEHR---KERDLQERSRLKRGEKRFTEGEPEQKKKHVLVPD 158

Query: 50  ----------FLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFPV 93
                     F+YG   V AAL +  R++++L   +     L           L     V
Sbjct: 159 SVPYTTPASEFIYGTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKV 218

Query: 94  K--TVPPQTIDKIVGKEAVHQGLALETAPLLS---------------------------- 123
           K        +   +     H G  L+ +PL                              
Sbjct: 219 KMAYAGWDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEE 278

Query: 124 ------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                         L       ++++LD + D  N+G I+RSA     D I+   R    
Sbjct: 279 ATVNSTNNRIPVRHLPGKSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAP 338

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---- 227
            S +  K+++GA E++P I++SN  D +Q+  + G+      +        +   D    
Sbjct: 339 LSPITIKASAGAAENMPLIKVSNEVDFIQQSKANGWHFFAADAPLPGSRYPDTTGDIDLT 398

Query: 228 -------KIALILGAEGKGLRPKTQETATSMAHLHMPGI------------IKALNVSNA 268
                     ++LG+EG GL    +  A S+  +                 + +LNVS A
Sbjct: 399 RNAVTQAPSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDSARVDSLNVSVA 458

Query: 269 AAVALYITQN 278
           AA+ +     
Sbjct: 459 AAILMEQFLR 468


>gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
 gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 216

 Score = 93.0 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 57/151 (37%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++D VN PHN  AILR+  A            S       A S S        
Sbjct: 16  RQPTLTVLMDEVNKPHNFSAILRTCDAVGVLTAHAVPPKSGVLPTFDATSGSAHKWVAVQ 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +   +T   Q   +         S       +        ++LGAE  G+  +  E A 
Sbjct: 76  RQPDAVTAVRQLQAAGMQVLATHLSQRSLDYREPDYTRPTCVLLGAEKWGVSDEAAEIAD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G++++LNVS AAA  L+  Q   
Sbjct: 136 ANIVIPMFGMVQSLNVSVAAATILFEAQRQR 166


>gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 272

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A +        LL+ K   A  D    LP
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYTMRSMLLSAKWVDALRDVIDELP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV TV P+  +++ G       LA      L  T D +R ++ +++++ VND  NIG
Sbjct: 77  A--PVYTVTPELAERVTGYHVHRGALASMQRKPLPATADLLRTARRVVIMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF 
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGFT 194

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D K     E    + D++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 195 LLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSLN 253


>gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3]
          Length = 252

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 125/238 (52%), Positives = 163/238 (68%), Gaps = 14/238 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQPE---------NLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +    +   + R     +          ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGK
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252


>gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895]
          Length = 348

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 90/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 104 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 163

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+G ++RS  
Sbjct: 164 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADAQDCVLALEDVANPHNLGGMMRSCA 222

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 223 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTIVTTSSD 281

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL       K+ L+LG E + L    +E       +   G ++ LNVS A  V L  
Sbjct: 282 QGKPLFSTALPAKMVLVLGRELESLPEAAREPGDLCVKIDGTGNVENLNVSVATGVLLGE 341

Query: 276 TQNH 279
               
Sbjct: 342 WWRQ 345


>gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
 gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
          Length = 219

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ + V+ PHN+ AI+R+  A     + +        +       S     +  
Sbjct: 18  RQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPTFSQVSQGSDKWIFLHT 77

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                      K   +      L +D              AL+LGAE  G+  +      
Sbjct: 78  HPNIQTAINHLKSKKFKIYAAHL-TDKSVDYRDIDYTQPTALLLGAEKWGVSEEAASLVD 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAAV L+  Q   
Sbjct: 137 GHIIIPMLGMVQSLNVSVAAAVILFEAQRQR 167


>gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 284

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 10/258 (3%)

Query: 30  YKKMQSFNQKSR------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++ + S +++               +   GV      + +        L     LA LD 
Sbjct: 22  FRDLNSVDRRPDLPALPGGRPGKGLVIAEGVLVAQRMIASRFTP-HAFLGVDKRLAELDA 80

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D   P     P      + +  +VG       LA+   P +    + + N++ + +L+ V
Sbjct: 81  DLRTPSVSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTVDEILANARSVAILEGV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQ 200
           ND  NIG+I R+A     D ++     +        + + G    +P+ R          
Sbjct: 141 NDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHALLVPFARFDEWPRGLDA 200

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                          +  PL Q ++  K+  ++GAEG GL           A + M    
Sbjct: 201 LRAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHAMAATDVRARIPMSRGT 260

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV+ AAA+A Y    
Sbjct: 261 DSLNVATAAAIAFYERAR 278


>gi|302037012|ref|YP_003797334.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
 gi|300605076|emb|CBK41409.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
          Length = 272

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 3/238 (1%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--- 88
            ++   +  R   +     L G   +   L +  + I  L+ T   L R   +       
Sbjct: 15  HIRDVVKTKRTRDRERVFVLEGTKPILELLQSAPQHIVCLVVTPMFLERQPPEIAQQIVS 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V + P   + ++   E     LA+   P  + +    +     +  D + DP N+G
Sbjct: 75  SGCTVHSCPEHQLAQLSDVETSSGVLAIVHQPTWNQSAILAQPKIFGLYGDMLQDPTNMG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A       +          +  + ++ +GAL  +P    ++L +           
Sbjct: 135 TIIRTAAGLDVSALWLAPHSVDVFNPKVVRATAGALFQLPIFPHTSLEELQNLDCVIIAA 194

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             G S              +  L +G+E +GL     + AT    + +   +++LN +
Sbjct: 195 DAGTSEGCVPIRAIRSIPARTVLAIGSESRGLSEPVLDAATVRCTIPLKPGVESLNAA 252


>gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
 gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
          Length = 255

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 15/255 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +   +       G   V   L         L AT + +          
Sbjct: 8   KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCCFLAATASWIQEHPDL---- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +        Q +              V    L + LD V DP N+G
Sbjct: 61  RINEIAEVSQEDLSR-ASLLKTPQQVLAVFEQPQYTLTPGVARHSLCLALDDVQDPGNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + II ++      +    ++  G +  +     S               
Sbjct: 120 TIVRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPDFIRSLGEDIPVF 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
              L+  +   + ++       +++G EG G+  + +       ++          ++LN
Sbjct: 180 GTFLNGKN---MYEQPLTANGLIVMGNEGNGIGKEVETLINRKLYIPNYPQGKETSESLN 236

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 237 VAIATAVICAEFRRQ 251


>gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A]
          Length = 227

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 223

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+  A          + +  ++       S     + 
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  K   +      L+S+          +     +LGAE  GL  +     
Sbjct: 77  NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AA++ L+       
Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168


>gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 227

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVITHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +      L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B]
 gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 333

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 13/282 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
             ++E+  +       +    HR       F+ K +  ++     LYG++         S
Sbjct: 55  SGRTERRDAYHHREAPRREPAHRATGAQAGFDGKDQRLNETR---LYGINACRETFKLRS 111

Query: 66  RKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
            ++ +L   +    +          +      V    ++KI G +  H G+ +       
Sbjct: 112 DEVIKLYLDEETAPKFADVMKYLARNRKAYHVVDADELEKIAGSQ-HHGGVVMVVRRKPV 170

Query: 124 PTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             +      +  ++   L+ LD V +PHN+GAI+RS   F   GI+ T+     +S   A
Sbjct: 171 QDIAGYLAANTAKSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTE-AGLLQSGAAA 229

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A G +EH+  IR   LTDALQ     G+  I  SS   + L +     ++ ++ G E 
Sbjct: 230 RTAEGGMEHVEGIRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEM 289

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+       A     +   G++++LNVS AA++ L      
Sbjct: 290 DGVSKAVASRADIGVQIPGTGLVESLNVSVAASLILGEWYRQ 331


>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 262

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 9/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S    ++H  Q       G   +   L  P+ +   L+ T+  +  L     
Sbjct: 14  HAEVKLIKSLQL-AKHRKQSNLFIAEGEKLIGEML--PAYQCQLLVGTEELVKPLLGRCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    L       +          Q  ++LD V DP N
Sbjct: 71  ESIAEAVILPDPKQIERVSGLKSPRPLL---ALCEIPIIEAPQALQQPTLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSW 205
           +G +LR+        ++ T+  +   S  + ++  GAL  +   R ++ T  L     + 
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGALARVQVYRYTDRTALLTMLTQTE 187

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263
                     +     +        L+LG EG G+        +    +  P     ++L
Sbjct: 188 IPVIGTFIDGAPLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDSHCESL 247

Query: 264 NVSNAAAVALYITQ 277
           NV+ A A+ +    
Sbjct: 248 NVAVAGAIVMAHLM 261


>gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 274

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A ++   +   
Sbjct: 23  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFA-QSFWPQAPE 81

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L     V  +     D+I   E+  +        +       V+     +VLD V D
Sbjct: 82  EWVLAAG-KVVVLADALFDEISALESPARMG----YVMDWDAGVQVQPGVATVVLDRVQD 136

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    I+  K  +   S  + ++  GA              ++ ++ 
Sbjct: 137 AGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVDEVQ 192

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  SS     + +       A  +G EG+G+     E A     +  PG  ++L
Sbjct: 193 GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMARHRISIAQPGGEESL 252

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 253 NVAAAAAICLHA 264


>gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24]
          Length = 227

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VVYGKQVIMHILNSHHEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 REFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
 gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
          Length = 249

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 16/256 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++ ++       G   V   L      +        A        +  
Sbjct: 6   KIKYIHSLELK-KNRNKEGKFVAEGFKVVDDLLALQPADLIV------ATGEWLRGKHFG 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V  + + K+   +   Q LA       +    ++  S+L + LD V DP N+G
Sbjct: 59  AETEVIEVTDEELKKVSFLQHPQQVLA--VFKQATSGDYSINTSELSLALDGVQDPGNLG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I  ++  +   +  + ++  G++  +       L             
Sbjct: 117 TIIRIADWFGITHIYCSQDTADVYNPKVVQATMGSIARVKVEYGDLL---GLVESLPADV 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +      + Q+   ++  +++G EGKG+ P   +       +           +LN
Sbjct: 174 PVYGTLLDGDNIYQQKLENRGLIVMGNEGKGISPALAKKVNHKLLIPNFPEGRATADSLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A A+     + +F
Sbjct: 234 VAIATAITCSEFRRNF 249


>gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
 gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
          Length = 294

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 84/287 (29%), Gaps = 38/287 (13%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALN--------------NPSRKIF 69
           ++    +++      +S+   +   + + G   V  A++                   + 
Sbjct: 3   DNPHSDRVRRIADLSRSKTRKKTGRILVEGPQAVREAVHFASDFVTDLYYDAAAGEDPVL 62

Query: 70  ----------QLLATKNALARLDWDANLPHPFPVKTVPPQT---IDKIVGKEAVHQGLAL 116
                      L     +   ++  +                  +       A    LA 
Sbjct: 63  GKIISEAQKKILYCHPCSSQVMEAISKDCQGIGALVRTEAVTGGLAPDASSFAALASLAD 122

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                            L +    + DP N G I+R A A  C  +I         +  +
Sbjct: 123 SVKSPGPVETAGHPARPLFLACWQLRDPGNAGTIIRVADAAGCPALILVDDCVDVTNPKV 182

Query: 177 AKSASGALEHIPYIRISNLTDAL---------QKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +S +G+L H+P + +S                   ++G   +            +  + 
Sbjct: 183 VRSTAGSLFHLPIVTLSTDDFFTEAARLGLPVCAADAYGTDQVEAIPLPDLMDSLKSSSQ 242

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + ++ G E +GL         S   + + G  ++LNV+ +A++  Y
Sbjct: 243 PLCILFGNEARGLDDSLINRCQSAVRIPLYGRAESLNVAMSASIIAY 289


>gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 217

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 81/199 (40%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           +A      DA      PV  +  +  + +         +A+               ++L+
Sbjct: 11  SAQHADLVDAARAAGVPVSPITDRAAEGLSETVTPQGIVAVCALLDRPLEEAVTPAARLV 70

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL  V DP N G ++R A A   D ++         +    ++A+G+L H+P  R+ ++
Sbjct: 71  VVLVDVADPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKCVRAAAGSLFHLPIARVRDV 130

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL    + G +T      +   L++       A + G E  GL     + A     + 
Sbjct: 131 PAALAACSAAGLRTFAAHGYADAELDRVDLAVPTAWVFGNEAHGLPADVLDRADLAVRIP 190

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G  ++LN++ AAAV +Y
Sbjct: 191 MYGRAESLNLATAAAVCVY 209


>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 223

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+  A          + +  ++       S     + 
Sbjct: 17  CRMQNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  K   +      L+S+          +     +LGAE  GL  +     
Sbjct: 77  NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSKEIISMV 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AA++ L+       
Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAIRQRK 168


>gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464]
          Length = 227

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 242

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V AAL    RK+ ++L     K+                +  V  + ID 
Sbjct: 2   ETCIVEGNISVKAALLGKKRKVHKILVDAKKKDKDTAFILHKAKEAQVDIAYVKREEIDA 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +      H G+           L+    +    L +++ V DP N G +LR+  A  CDG
Sbjct: 62  LAT-GKTHGGIIAYCGQRKYQNLEELVNKKQVFLALIEGVEDPFNFGYVLRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R   + + V+ ++++GA E++  I   ++ D L  +H      +         L 
Sbjct: 121 VLVPLRNWTTAADVVTRASAGASEYMNIIIADDMEDTLTYLHQNDITLLCAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278
                ++I L +G E +GL       +    ++      +  N    + + A+  +    
Sbjct: 181 SYTFPERICLAIGGEMRGLSKAVMTHSDQNLYIPYRSDFR--NAMTAAASTAIFAFEVVR 238

Query: 279 H 279
            
Sbjct: 239 Q 239


>gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
 gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
          Length = 153

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+     G + +G S        Q   +    L+ G+E  G+     +   S  ++ 
Sbjct: 64  HTFLKVHQQRGGRLLGFSVRGNINYIQHEFHPDDWLLFGSETTGIPKNILDICDSTLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AVAL+ ++    
Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQLT 150


>gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 289

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---------HPFPVKT 95
           Q           +  AL    +    LL  +  L R   D +              P+  
Sbjct: 33  QDGLFIAESPKVIERALRAGYQPA-SLLVEEKVLDRDLADLDHEMTMNQTEGLGQTPIYV 91

Query: 96  VPPQTIDKIVGKE----AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           +  Q I ++ G      A+     ++   L S           + +L+ V +P NIGAI 
Sbjct: 92  INDQQIRQLAGYNLLRGALAAMYRVQRPNLASLFKSIPNPHPRIAILERVVNPANIGAIF 151

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSW 205
           RSA A   DG+I T   +       ++ + G +  IP+  I   T  +       +    
Sbjct: 152 RSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIPWTYIDAKTWHMEGIDLLHRFGYQ 211

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   +  +    +  K DK+A+ILG+EG GL  +T   +     + M   + +LNV
Sbjct: 212 TAAMALRHNTIRIDDPRLAKLDKLAIILGSEGPGLEEQTITQSDFTIKIPMAVGVDSLNV 271

Query: 266 SNAAAVALYITQNH 279
           + A+A+A +   N 
Sbjct: 272 AAASALAFWELGNR 285


>gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment']
          Length = 261

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVG 106
            L G H V  AL    R+I ++   +     R+            P      + + ++  
Sbjct: 5   ILVGPHAVLEALRAKRRQIDRIYLARERYDSRIVEIVKRARELGVPCTQEKRERLGELS- 63

Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K A HQG+    +             + A     LL++LD V DP N+GAI+R+A A   
Sbjct: 64  KGATHQGVLAVVSEADYEDPFELVARIKAATPLPLLLLLDGVQDPQNLGAIIRTAEAAGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+   K  +   +  +AK+++GA EH+   R++ L   L  +   G  T+G    + + 
Sbjct: 124 NGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPAFLAWLKDQGIWTLGADPSAVQS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      + +++G E +GL    ++    +A +   G + +LN + AAAV L+  +  
Sbjct: 184 LYEIDLRAPMGVVIGGEHRGLTMLVRQRCDLLARIPTRGRVDSLNAAAAAAVFLFEIRRQ 243


>gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
 gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
          Length = 226

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       + N  + +  +   K    +  +   +    P+K V  Q   + +    
Sbjct: 2   IIYGKQLFLHIIKNYKKSVKTVYLAKECD-KALFSQIVGVGAPIKRVDNQK-AQALAHGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E       ++D ++    + VL  ++D  NIGAI+R+A A  C GI+   +  
Sbjct: 60  NHQGFLAEVEEFEFKSIDEIKKQNFIAVLYGLSDVGNIGAIVRTAHALGCGGIVVVAKN- 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      AS    +   I +     +L          I  ++   K   +   + K+
Sbjct: 119 --LAMEGVLRASSGAAYEANIALVEDGLSLLNELKQVGFKIYATASGGKNAHEVKFDQKV 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL++G+EG+GL  K    +  +  + M     +LNVS A A+  
Sbjct: 177 ALVMGSEGEGLHKKVLAKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 253

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 1/175 (0%)

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               H      T        D +   QL L V        +  A +           +  
Sbjct: 1   MHTPHDIETDMTPERFKRITDMLAQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRVHA 60

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                        +          +     +   +   S         SDS         
Sbjct: 61  VWPKTWIHKRKGTARGSQNWVDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAIDY 120

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A+++G E  G+  +    A     + M G++++LNVS AAA  LY  Q   
Sbjct: 121 TKPTAILVGQEKHGIGEEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 175


>gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 181

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 2/179 (1%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            I  ++      QG+  E A       D ++   L +  + V DP N+G ++R+A A   
Sbjct: 4   EILSLLADSKTPQGIVAEIALEQPVLPDQLQGRYLYL--EDVQDPGNVGTMIRTADAAGF 61

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG++ +K  +   S    +S  G+  HIP  ++       +   S         S++   
Sbjct: 62  DGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASID 121

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             Q  + D+  L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++  + 
Sbjct: 122 YRQLPQTDRFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180


>gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32]
          Length = 227

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
 gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
          Length = 252

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 78/255 (30%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +   + +     G       L         L AT + L          
Sbjct: 6   KIKYIHSLELK-KTRKEEQVFLAEGPKLTGDLL--GHFPCRFLAATSSWLQAHPDIQAN- 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +        Q +                   L + LD + DP N+G
Sbjct: 62  ---EIAEVSQEELSR-ASLLKTPQQVLAVFEQPQYTLSPDFARQSLCLALDDIQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + II ++      +    ++  G +  +     S          +    
Sbjct: 118 TIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLPEFIHSLGDAP--- 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
            +  +    + + ++  +    +++G EG G+  + +       ++          ++LN
Sbjct: 175 -VFGTFLDGENMYEQPLSTNGLIVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLN 233

Query: 265 VSNAAAVALYITQNH 279
           V+ A AV     +  
Sbjct: 234 VAIATAVICAEFRRQ 248


>gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
 gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
          Length = 324

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 114/257 (44%), Gaps = 11/257 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA-LARLDWDANLPHP 90
           +   + +   ++    ++ G + V   L    P+  ++  +  +N               
Sbjct: 65  RRPQKVAGRAAEDGPEYVLGRNPVVECLRADVPATALYVAVGAQNDERLTESVRMAADKG 124

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVND 143
             +  V    +D++  +  +HQG+AL+  P      +           + +++ LD++ D
Sbjct: 125 ISILEVQRAELDRMS-ENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDNITD 183

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RSA AF   G++   R S + +AV  ++++GA   +P  +  NL   L    
Sbjct: 184 PRNLGAVIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYA 243

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G Q +GL +     L+    +  + +++G+EGKGL    +E   S+  + +   +++L
Sbjct: 244 AAGLQIVGLDAGGDVTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESL 303

Query: 264 NVSNAAAVALYITQNHF 280
           N S AA V L       
Sbjct: 304 NASVAAGVVLADFARQR 320


>gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 338

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 95/313 (30%), Gaps = 39/313 (12%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR----------------------- 41
             + + K  S K     + RR++    +    N++ R                       
Sbjct: 24  DSRNNNKRPSGKGRDQGQRRRDNERTSRSPRANERERSPWKTVSRPESDSVTPMHGGISG 83

Query: 42  ---------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP 90
                       + E   +YG +   A   N S  I +    ++   R          + 
Sbjct: 84  KSQIDPEQLRRQRMEETRIYGENACQAMFKNRSEAIVRAWFVESVTPRFRNALKWMAANR 143

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146
                V    + K+ G E  H G+               L        ++ L+ V +PHN
Sbjct: 144 KAYHVVDEAELTKVSGTE-HHGGVCFLIKKRNGLDAETYLKDAPVKDCVLALEDVGNPHN 202

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+RS   F   G+I          A +  +  GA         S +T       +  
Sbjct: 203 LGGIMRSCAHFGVQGVILQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRKAGY 262

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                 S      L +    +K+ L+LG E  GL     E       +   G++++LNVS
Sbjct: 263 TIVTTSSHKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDMSLFVGGSGLVESLNVS 322

Query: 267 NAAAVALYITQNH 279
            A  + L      
Sbjct: 323 VATGIMLAEWWRQ 335


>gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 257

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 12/258 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDA 85
              K + S  +  +           G   V   L+   P+         ++   +     
Sbjct: 5   AKLKYIHSL-KSKKGRVAQGTFIAEGPKVVGDLLSTFQPTMMFATPHWLQDIHNQESLTH 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  ++TV    + KI  ++  H    L    +    L    + QL++ LD + DP 
Sbjct: 64  LQQMGVQIETVTNDELTKISCQQ--HPQDVLCVFEMRKSHLAFDPSRQLILALDDIQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F+   I+ ++  +   +  + ++  G+L  +  + +       Q    +
Sbjct: 122 NLGTIVRIADWFAIPTILCSENTADIYNPKVVQATMGSLARVNVVYLDLENYIRQHASEF 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIK 261
               +  +    K + QE       +++G EG G+    +       ++          +
Sbjct: 182 P---VYGTLLDGKDIYQENLGGHGLIVMGNEGNGISAAIRTFVNKPLYIPNFAKSANRAE 238

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 239 SLNVAIATAITCSEFRRR 256


>gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 197

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 59/153 (38%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L +V+++++DPHN+ AILRS  AF+   +       P        SAS      
Sbjct: 19  CRRQRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLLYVGQPFPEVGRKSSASARKWVR 78

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                       +                   L +       A+ILG E  G++   ++ 
Sbjct: 79  RIRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPEWDFTRPTAVILGNEHSGVQEDLEQM 138

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ++ M G++++LNVS AAAV LY      
Sbjct: 139 VAQEIYIPMQGMVQSLNVSVAAAVILYEAFRQR 171


>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 223

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+  A          + +  ++       S     + 
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  K   +      L+S+          +     +LGAE  GL  +     
Sbjct: 77  NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AA++ L+       
Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168


>gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS]
 gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS]
          Length = 314

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99
               E   + G + V   L    P+  ++  + T+ +            +   +  VP  
Sbjct: 66  RKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISILEVPRS 125

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D++    A+HQGL L+  P      D             LL+ LD+++DP N+GAI+R
Sbjct: 126 DLDRMS-NNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVR 184

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q +GL
Sbjct: 185 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGL 244

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +D    L++      + +++G+EGKGL    +E   ++  + M G  ++LN S AA V 
Sbjct: 245 DADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVV 304

Query: 273 LYITQNHF 280
           L       
Sbjct: 305 LAEIARQR 312


>gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 230

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ A++R+A A     I      +     +L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQI-HAIWPTTEMYTLLSAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKQ 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
 gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
          Length = 234

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +        +   +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKENMRVLSHTSAGARNWVELD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              + +                  SD+             A+I G E  G+  +    A 
Sbjct: 75  THDNMVDAITHLKAQGMQVLATNLSDTAIDFRDVDYTKPTAIIFGGEKNGITAEALAMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
 gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
          Length = 233

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 7/229 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL +P  ++ +++    A          A      PV+      +  + G     QG+
Sbjct: 2   LEALGDPDLRVDKVILADTARGPAAAEIQRAAKAAGVPVQRASAHRVKVLAGNGKQDQGV 61

Query: 115 ALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             +        L    D  R    +++LD +  P N+G ILR+A A    G+I  +R   
Sbjct: 62  LADVVAPRMRALAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVA 121

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +   ++ KS++G     P +R  +  +A + +   G+    L + +   +       + A
Sbjct: 122 ALDPMVVKSSAGVAFRAPVLRCGSAREAAELLVEAGYSLFALGASATTSIFDAELPQRSA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +LG E +G+     E  T    + MPG +++LNVS AAAV  +     
Sbjct: 182 FVLGGETEGVGEAVAELVTEWLSIPMPGDVESLNVSAAAAVLSFELVRR 230


>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 210

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             S+      Q        ++LG E  G+ P+  E A +   + M G++++LNVS AAAV
Sbjct: 110 HFSERAVDYRQADYTRPTCILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAV 169

Query: 272 ALYITQNHF 280
            L+  Q   
Sbjct: 170 ILFEAQRQR 178


>gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
 gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
          Length = 226

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +Y    V   + N   KI  L   K+   +   +  +   F VK +P     K+  K A
Sbjct: 2   LIYAKQPVQYIIKNYPNKIRTLYLAKDVDKKEYSEL-MKMNFEVKRIPADAAGKMC-KNA 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  E         ++  +   ++VL  + D  NIGAI+R+A A   + I+      
Sbjct: 60  NHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACG--I 117

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +       S          + +    +          I  +      +       K 
Sbjct: 118 KKLNFEPVMRTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQKR 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL+LG EG+GL  +       +  + M     +LNVS A A+ +
Sbjct: 178 ALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221


>gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 230

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ PHN+ AI+R+A A     +      +      L+ +A         
Sbjct: 16  RQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV-HAIWPTTEMYTRLSSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   SD      +        +++G E  G+  +    A 
Sbjct: 75  THAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQEKTGISEEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 KDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
 gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
          Length = 152

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +            L ++      ++      NL
Sbjct: 4   VVLISPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHDNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + IG S+  +    +    +   L+ GAE  GL P+  E  T    + 
Sbjct: 64  EAFKACHQQRGGRWIGFSTKGQCSYTRFEFQNNDWLLFGAETTGLPPEILEACT-NVRIP 122

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AV L+  Q   
Sbjct: 123 MSEPGVRSLNLSVSVAVGLFEAQRQL 148


>gi|315127020|ref|YP_004069023.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
 gi|315015534|gb|ADT68872.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
          Length = 243

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   QK ++  Q     + G   V   LN+P  K+  + AT+N +          H 
Sbjct: 8   KLIRQLGQK-KYRKQLNQYLVQGEKNVLELLNSP-LKVTDVFATQNFIDNNQSAYPQTHF 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                     +  +V   A         A +  P+      + L++ LD V+DP N+G I
Sbjct: 66  ITADEEQLTKVSTLVSNNA-------AIAIVDMPSTTLPDENSLILALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++   +             +
Sbjct: 119 IRVADWYGIKHIVASTDSADPYNPKTISATMGSFVRVSVSQVDLPSYLTSLDVPIYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +             K  L++G+E  G+R +     T+   +   G  ++LNV+ A  
Sbjct: 179 EGENVHHCQ-----FAGKGVLLMGSESHGIRQQCAALVTNKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNFKRQ 242


>gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 227

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSRPEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 276

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 231 GTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 269


>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R  K+     +      +       G      AL   +  I   +  +        D   
Sbjct: 7   RKIKQEFIKLKTRGGRRKSNYFLCEGKRCCDEALKYAANSIECCVVAQEKADLDFLDMK- 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   +  + + ++   E     L                    ++VLD V +P N+
Sbjct: 66  ------FVLSEKEMSELSLTENPQGIL--MLMKKPDKVECPSSLKPFVLVLDGVAEPGNM 117

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A+A   + +I T       +A   ++  GA   + +I + +L    Q      F
Sbjct: 118 GTILRTALAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFIYVESLESLSQDFPEAKF 177

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                 +D     +    +    L+ G EG G++     +      + MPG  ++LNV+ 
Sbjct: 178 WLTSPRADISLYNKGFDLSGSF-LVFGEEGDGIKDF---SVGERVTIPMPGDTESLNVAQ 233

Query: 268 AAAVALYI-TQNHF 280
           AA + L+   + + 
Sbjct: 234 AATLFLFEGVRRNL 247


>gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 240

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 23/254 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K +    QK ++          GV  ++  LN+    +  L  T+      +      
Sbjct: 6   QIKLITRLKQK-KYRVAEGFFVAEGVKVINELLNSTLE-LHHLFTTETFKINNNETL--- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +     + I  +              A    P    +  + L++ LD V DP N+G
Sbjct: 61  ----ITQAELKKISFLT-------TPNKALAVFKIPEAVKIDTNGLIVALDDVRDPGNLG 109

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    +    ++ +       +  + ++  G++  +    ++      Q   +    
Sbjct: 110 TIIRLCDWYGITNLVCSIGTVDCYNPKVIQATMGSITRVNISYLNLSYFLKQNNKTPIL- 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
               +    + + +    +   L++G E  G+    +E  T+   +   G     ++LNV
Sbjct: 169 ---GAFMDGENVYKTKLPNSGILVMGNEANGVSKTIEEQVTNRIAIPRFGTLQATESLNV 225

Query: 266 SNAAAVALYITQNH 279
           + A A+ L   + +
Sbjct: 226 ATATAILLSEFKRN 239


>gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 161

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +        +   L ++       +P       
Sbjct: 7   VVLFQPQIPPNTGNVARTCAATGAELHLIEPLGFSLDERQLKRAGLDYWPWVPLHVHPGF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    G + + LSS + +P +         L+ G E  GL P+  E A     + 
Sbjct: 67  EALSAEQRRRGGRLLALSSQADQPYQHCRFCSDDWLLFGRESDGLPPELLEQADMRLTIP 126

Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280
           MP      G +++LN+S + AV L+      
Sbjct: 127 MPGSVRHGGGVRSLNLSVSVAVVLFEALRQL 157


>gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 283

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 98/266 (36%), Gaps = 14/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  N +    ++           +  AL         LLA         + A  P
Sbjct: 17  DYTQLKDVNLRRSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAASP 76

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                    P PV       ++++VG       +A           + ++++  +++L+ 
Sbjct: 77  ATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPDPREILKHASRVLILED 136

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GA +RSA A   D I+ T   +        + + G +  +P+ R+    D   
Sbjct: 137 LVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPAL 196

Query: 201 KMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +         +                   K+ALI GAE  GL+P+T   A  +  +
Sbjct: 197 FHEAGFELAALALREDSQDLRDYATELAGDPTRKVALIAGAERDGLKPQTIARADKVVRI 256

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   + +LNV+ A A+A + T  + 
Sbjct: 257 AMAHGVDSLNVAGAIAIACWATAANR 282


>gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1]
 gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str.
           Langford 1]
          Length = 244

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E L L G   +   +NNP  +        +       D    +    +        K  
Sbjct: 2   SEFLILKGRKGIQDLINNPKLRHLIEEVHLSKTQIQIIDLCNKNGVKYQIKEKSYFWKF- 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSC 159
             +  ++             LD++          L+++LDH+ DP N+GAILR+  AF  
Sbjct: 61  ETKKKYKYAVAFIRKKKDLDLDSLIRICSSRERSLILILDHLQDPFNVGAILRTCCAFEV 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSK 217
           DG+I  K  S   +  +   +S             +      +  +   +        + 
Sbjct: 121 DGVILPKDKSAPLNHEVTLKSSQGYSLNINTVEVSNLNNAITKLKNRGYWVYSTEIGPNT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  ++    DK ALI+G+EGKG+    ++ +    H+ M   + +LNVS AA + +    
Sbjct: 181 KSFKEVEYADKCALIMGSEGKGVSKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEIS 240

Query: 278 NH 279
           + 
Sbjct: 241 DQ 242


>gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 292

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  ++    +    ++       G   +  A+      +  +L T+     L    + 
Sbjct: 10  ADYANLRDVELRKSMEAEHGLFIAEGEKVIRRAVAAGY-PVRSVLLTRRWADPLADLLDG 68

Query: 88  P------------HPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131
                               V    +  +  +E                        VR 
Sbjct: 69  LGDRVYVVDDDVMEGIAGFPVHRGALAAMERRELPPVDEVLRGASHATAGAVDEGGPVRP 128

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + L+VL+ + D  N+GAI R A A   DGII + R +        K + GA+  IPY R
Sbjct: 129 PRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAIPYAR 188

Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + N  D L+++ + GFQT+         P++     +++AL+LG+EG GL  +    A  
Sbjct: 189 MGNWYDGLEEIRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSEGDGLSSRWLREADE 248

Query: 251 MAHLHMPG-----IIKALNVSNAAAVALYITQN 278
              + M        + +LNV  AAA+A +    
Sbjct: 249 QVCIPMSPTAMASGVDSLNVVAAAAIACHGLMR 281


>gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
 gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
          Length = 347

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 80/255 (31%), Gaps = 9/255 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88
           K      Q  +   +     +YG +   A   N    I +    ++   R          
Sbjct: 92  KSQIDPEQLRKQRLEETR--IYGENACQAMFKNRPEAIVRAWFLQSVTPRFRDALKWMAA 149

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDP 144
           +      V  + + K  G E  H G+           +   L     +  ++ L+ V +P
Sbjct: 150 NRKAYHVVDDEELTKASGTE-HHGGVCFLIKKRGGMSVETYLQQAPATDCVLALEDVGNP 208

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G I+RS   F   G+I          A +  +  GA                Q   +
Sbjct: 209 HNLGGIMRSCAHFGVQGVILQDAGVVESGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQA 268

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   S    + + +     K+ L+LG E  GL            ++   G +++LN
Sbjct: 269 GYTIVTTSSHKGSQDISKAKLPAKMVLVLGQERDGLSDSVWNEGDMSLYIGGTGKVESLN 328

Query: 265 VSNAAAVALYITQNH 279
           VS A  + L      
Sbjct: 329 VSVATGIMLAQWWQQ 343


>gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
 gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii]
 gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
          Length = 415

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 113/322 (35%), Gaps = 61/322 (18%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQ-----SFNQKSRH---TSQPENLFLYGVHTVSAALNNP 64
           F  + +H  +L+ N R  ++ +      F +K+        P   ++YG ++V AAL   
Sbjct: 85  FGKRKAHELRLKENQRRMEQERTTHVHKFEKKNATQGLRPNPLMEYVYGTNSVLAALQGN 144

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---------- 114
            R+ +  L     L              +       ++ +      +  +          
Sbjct: 145 KREYYSRLLHYGQLDPRLQKLAKSRNVELVETDKHRLNLMTNYAVHNNIILETKPLQPPE 204

Query: 115 ----------------------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
                                   +    +   +   +N  L + LD V DPHNIGAI+R
Sbjct: 205 ISHLQMVNPESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVVDPHNIGAIMR 264

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA     D I+ +++     SA ++K++SGA+E +P   +        +    G  T   
Sbjct: 265 SAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSESQQGGGWTFVT 324

Query: 213 SSDSKKPLEQEIKND----------------KIALILGAEGKGLRPKTQETATSMAHLHM 256
           +  +    + +  N                  + L++G EG G+R   +  +     +  
Sbjct: 325 AGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVRTNLKMRSDFFVEIPF 384

Query: 257 -----PGIIKALNVSNAAAVAL 273
                 G + +LNVS A A+ +
Sbjct: 385 GRDDEKGPVDSLNVSVATALLI 406


>gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 153

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLQYHLDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                       + +G S   K         +   L+ G+E +GL P  Q+    M ++ 
Sbjct: 64  EQFQAYHQQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPPTFQDQCDQMLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           MP   +++LN+S + A+ L+      
Sbjct: 124 MPHPEVRSLNLSVSVAIGLFEALRQL 149


>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 256

 Score = 92.2 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 2/155 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ A+LRS  A   + I     +          +      
Sbjct: 18  LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGV--WDQKTKIRKGTAMGSEHW 75

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
               +  S                +   SD              A+ILG E  G   +  
Sbjct: 76  VKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAI 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS AAAV LY  Q   
Sbjct: 136 AVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 170


>gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 153

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+     G + +G S        Q        L+ G+E  G+     +   S  ++ 
Sbjct: 64  HTFLKVHQQRGGRLLGFSVRGNIDYIQYEFRPDDWLLFGSETTGIPENILDICDSTLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AVAL+ ++   
Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQL 149


>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 223

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+  A          + +  ++       S     + 
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  K   +      L+S+          +     +LGAE  GL  + +   
Sbjct: 77  NHENTITAISDLKNKGFKLYGTTLNSE-SVDYRNFDYSQNTCFVLGAEKWGLSNELKSMV 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AA++ L+       
Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168


>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 223

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+  A          + +  ++       S     + 
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLN 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  K   +      L+S           +     +LGAE  GL  +     
Sbjct: 77  NHENTIKAISDLKNKGFKLYGTTLNSK-SVDYRNFDYSQNTCFVLGAEKWGLSNELISMV 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS AA++ L+       
Sbjct: 136 DQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 168


>gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 175

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 81/156 (51%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 17  EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 77  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +  L M G + +LN S AA++ +Y       +
Sbjct: 137 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKRNE 172


>gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
          Length = 228

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I      +     +   SA         
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI-HAVWPNEQMRTLTHTSAGARNWVEVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S L              +   SD              A+I+G+E  G+  +    A 
Sbjct: 75  THNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
 gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
          Length = 226

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       + N  + +  +   K    +  +   +    P+K V  Q   + +    
Sbjct: 2   IIYGKQLFLHIIKNYKKSVKTVYLAKECD-KALFSQIVGVGAPIKRVDNQK-AQALAHGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E       +LD ++    + +L  ++D  NIGAI+R+A A  C G++   +  
Sbjct: 60  NHQGFLAEVEEFEFKSLDEIKKQNFIAILYGLSDVGNIGAIVRTAHALGCGGVVIVAKN- 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      AS    +   I +     +L          I  ++   K   +   + K+
Sbjct: 119 --LAMEGVLRASSGAAYETDIALVEDGLSLLNELKQVGFKIYATASGGKNAHEVKFDRKV 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL++G+EG+GL  K    +  +  + M     +LNVS A A+  
Sbjct: 177 ALVMGSEGEGLHKKVLTKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
 gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
          Length = 220

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ + V+ PHN+ AI+R+  A     +          +       S     +  
Sbjct: 18  RQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGSDKWVFLHS 77

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                      K  ++       +  S     +       A++LGAE  G+  +      
Sbjct: 78  HPNIKTGINHLKRQNFNIYAAHFTDQSLDYR-EIDYTQPTAILLGAEKWGVSEEAANLVD 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAAV L+  Q   
Sbjct: 137 GHIIVPMLGMVQSLNVSVAAAVILFEAQRQR 167


>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 250

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 2/155 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ AILRS  A   + I              A  +   ++
Sbjct: 12  LLSTRQPSLTVCLEQVHKPHNVSAILRSCDAVGINRIHGVWDQKTKLRKGTAMGSEHWVK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +  I +               +   SD      +       A+ILG E  G   +  
Sbjct: 72  TEMHSSIDDA--VGVLKQQNMQVLVTHLSDDSVDFREIDYTQPTAIILGQERHGATEEAI 129

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 130 ALADKNIVIPMVGMVQSLNVSVAAALVLYEAQRQR 164


>gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 258

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K                   +          G       
Sbjct: 3   MEIIESKENKLIKSLKKLKQKK-------------------YRDSENKFLAEGYK----F 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+        ++      +   ++           V  +  +++  +E            
Sbjct: 40  LDYNYFPETIIIREDIFQSNFYFEKINKFTCKKIVVIRKVFEELSSQENSQG----IIIL 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 96  YNKKTNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +           +     +    +K A+I G EG G+
Sbjct: 156 MGSILNVNLYYLEKSEIINFLKENNYSIISTYLDKAAISYNKIKLKEKNAIIFGNEGNGI 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        + +    ++LNV+ A  + LY  +
Sbjct: 216 SDDFINITNYKTIIPILSNTESLNVAVATGIILYKFR 252


>gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5]
          Length = 218

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 74/193 (38%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  + I  I  ++     + +             R  +  + LD V DP N+
Sbjct: 20  ASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNL 79

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A    G+I     +   S    ++  G++  +P  R +       +  +   
Sbjct: 80  GTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRKSAGVS 139

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                 + +      + +   + L++G E  GL  +  + A ++A +   G   +LN++ 
Sbjct: 140 VVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAV 199

Query: 268 AAAVALYITQNHF 280
           A AV L+  + H 
Sbjct: 200 ATAVMLFEARRHL 212


>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 250

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 2/155 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ A+LRS  A   + I     +          +      
Sbjct: 12  LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRIHGV--WDQKTKIRKGTAMGSEHW 69

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
               +  S                +   SD              A+ILG E  G   +  
Sbjct: 70  VKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAI 129

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS AAAV LY  Q   
Sbjct: 130 AVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 164


>gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 230

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     I      +P+    L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQI-HAIWPTPAMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
 gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
          Length = 230

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 1/156 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +   R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A    
Sbjct: 11  DMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTNRMKTLVSTAAGSNS 69

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                   S                    S S              ++LG E  G+  + 
Sbjct: 70  WVQVKTHRSIHDAVSHLKSQGMQVLATNLSASAVDFRDVDYTRPTCILLGQEKTGISAEA 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 224

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L ++++ VN PHN+ AILR+  A          +    ++       S     +
Sbjct: 16  NCRMENLTVLVEAVNKPHNLSAILRTCDAAGVFEANFICKRDEVKTFNSTAQGSQKWVKL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +    +  K   +      L+             +    +LGAE  GL  +    
Sbjct: 76  NNHETTISAVSHLKKKGFKLYGTTLNDS-STDYRNFDYAENTCFVLGAEKWGLSDELISK 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS AA++ L+      
Sbjct: 135 VDESIFIPMTGMVQSLNVSVAASILLFEAIRQR 167


>gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
 gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
          Length = 273

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 101/295 (34%), Gaps = 38/295 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+     ++                D + +++ +   R+        + G   V   
Sbjct: 1   MERITDPADPRLD---------------DVRDLKNTDNSKRYVFGEGP-LVAGR--VID- 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
                  +  ++  +  L     D       P   PV  V  + + ++ G + +H+GL  
Sbjct: 42  ---SRFPLRCVVGFEKKLDTFFADRAEQGLAPIDAPVYVVTRELLAEVAGYD-MHRGLIA 97

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                   ++  + N++ L+VL+ V D  NIGAI R+A     DG++     +       
Sbjct: 98  VADRAEETSISEMLNARTLIVLEGVGDHENIGAIFRNAAGMDVDGVLLGAGTADPLYRRS 157

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----------- 225
            + + G +  +P+  +   +   Q+      +                            
Sbjct: 158 VRVSMGHVLRLPFAHLDGTSTTWQRSLDQLREQGFRLVSLTPDSRAVHLAEALVDDTGHP 217

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K+AL++G EG GL           A + M     +LNV+ +AA+A Y  Q   
Sbjct: 218 YKKVALLVGGEGPGLTEHAMRATDVRARIPMAAGTDSLNVATSAAIAFYERQRSL 272


>gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 153

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G + R+  A   +  +            L ++      ++     ++ 
Sbjct: 4   IVLVYPQIPQNTGNVARTCAATKTELHLVGPLGFEISDRYLKRAGLDYWPYVKLNYHNDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +     H  G + IG S   K    +        L+ G+E  GL        ++  ++ 
Sbjct: 64  AEFKVYHHKLGGRLIGFSKMGKLNYTKFQYQTNDWLLFGSETNGLPKDVLNYCSATLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S +AA+ L+  +   
Sbjct: 124 MTQPNVRSLNLSVSAALGLFEARRQL 149


>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
          Length = 400

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 105/326 (32%), Gaps = 75/326 (23%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS---------------------AALNNPS 65
           +   K      Q S +     ++ + G   +                      + L    
Sbjct: 74  NPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIRYVSVILYSLFFFIATERIVESSFLFYCV 133

Query: 66  RKIFQLLATKNALAR-------------------------LDWDANLPHP-----FPVKT 95
           R I   +  +    +                         L  +A +P         +  
Sbjct: 134 RLISCEIEFQGDNFKGVVHREVCMFQTNKQGMTTEIECLLLHEEAKIPQGLESLSIRIVR 193

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQLLMVLDHVN 142
           V    + K+ G ++     A+    + S   D                ++  ++VLD + 
Sbjct: 194 VSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFPSAHRVLVLDSIQ 253

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----------LEHIPYIRI 192
           DP N+G ++RSA+AF+ DG           +    +++ GA            H+  +  
Sbjct: 254 DPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNWNHLKLLEN 313

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                 L    +   Q +   S       Q +    + LILG+EG GL  + ++    + 
Sbjct: 314 EFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQARKVC-VLV 372

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + M G  ++LNVS A  + LY+ QN
Sbjct: 373 SIPMAGDFESLNVSVAGGIFLYMLQN 398


>gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 228

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I      +     +   SA         
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI-HAVWPNEQMRTLTHTSAGARNWVEVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S L              +   SD              A+I+G+E  G+  +    A 
Sbjct: 75  THNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 8/230 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           LYG + +   L + + +I +L        +                V       + +I  
Sbjct: 20  LYGRNVIIEVLLDNTIEIHKLHLSNSNKSDGAIETILSLAKKRDIQVTYHDKNALSRISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                QG+A++         + ++N     L+ LD + +P N+G I+RS  A   DG+I 
Sbjct: 80  NSKQDQGVAIDIIANSYKNANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVIL 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+ S           + A            T           +   LSS +KK +    
Sbjct: 140 PKKNSAK--ISPLVIKASAGTLFKLPIYYCNTLDEVLKELKDTKIYLLSSHAKKSIYDLR 197

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + DK   +LG E  G+  + +       ++ M   +++LNV+  A++  +
Sbjct: 198 QEDKSIFVLGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAF 247


>gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Glycaspis brimblecombei]
 gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Diaphorina citri]
          Length = 239

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A        
Sbjct: 15  MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S          +         ++      Q   N    +ILG E  G+  +    A
Sbjct: 74  RTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 257

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 15/268 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I ++ D    +L R +RD K  +    +             G   +     +P      +
Sbjct: 4   IIAITDPSDVRL-RLYRDVKD-RDLTGR------EGLFMAEGRVVIERLFVSPWCVCISV 55

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           L T + L  L  D +     PV  V    +D++ G       LAL      +   + ++ 
Sbjct: 56  LTTPDRLKML--DISQAGDVPVYVVDQAIMDQVAGFAIHRGYLALGRYSGPAGLGEVLKP 113

Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               ++ L  + +  N+G ++R+A AF  D ++              + + G    +  +
Sbjct: 114 GRVRVLALSTIANTDNMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGG---VFQV 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
               + + ++ + + G     LS      L+     ++ A + GAEG GL P+     T 
Sbjct: 171 PHIRVPNLVEALTAHGVAPYALSPSGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAACT- 229

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M G   +LNV+  + + LY    
Sbjct: 230 SVRIDMHGGFDSLNVATTSGIVLYHMCR 257


>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
          Length = 229

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 363

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 104/291 (35%), Gaps = 39/291 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70
           S +  H  K R  +   K+        R       + + G + V  AL +         Q
Sbjct: 87  SARKGHV-KNRVANAKAKQSARRPVARRGGKGSSEMVV-GRNPVFEALRDGVPATTLYVQ 144

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++ G    HQGL L+  P      +  
Sbjct: 145 QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTGGL-NHQGLVLQVPPYEYAHPEDL 203

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 204 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 263

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237
                P  R +NLT AL+     G   +GL++D +  +               E      
Sbjct: 264 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 311

Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   KGL     ET   +  + MPG  ++LN   AA V LY      
Sbjct: 312 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 362


>gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 316

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 104/291 (35%), Gaps = 39/291 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQ 70
           S +  H  K R  +   K+        R       + + G + V  AL +         Q
Sbjct: 40  SARKGHV-KNRVANAKAKQSARRPVARRGGKGSSEMVV-GRNPVFEALRDGVPATTLYVQ 97

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
                +   R             +   P   +D++ G    HQGL L+  P      +  
Sbjct: 98  QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTGGL-NHQGLVLQVPPYEYAHPEDL 156

Query: 129 ------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 157 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237
                P  R +NLT AL+     G   +GL++D +  +               E      
Sbjct: 217 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 264

Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   KGL     ET   +  + MPG  ++LN   AA V LY      
Sbjct: 265 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 315


>gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 276

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 100/260 (38%), Gaps = 11/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNP--SRKIFQLLATKNALAR 80
            R +   K +++    S  +S P +L  + G + +  AL +      ++    ++  L R
Sbjct: 9   SRTNARVKALRAAC--SGKSSLPGDLLGIEGENLIGEALRSGIGFDTVYVREGSEGVLER 66

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                     + V  +     +  V   +   G+A          L A +NS++ +VL+ 
Sbjct: 67  ASLRGLQAQSWAV--LSKDVFESAVDTASPQ-GVAATFRIAQPLPLGAPKNSEVCLVLED 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N G ++RSA AFS   +  T       +    ++++G++  +P +R         
Sbjct: 124 IQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVFRMPVVRGPLSEIKSA 183

Query: 201 KMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                         S    P+ Q       AL++G EG GL     E A    H+     
Sbjct: 184 LGAEGVRLYAAVARSSGATPVMQAKLLAPCALMIGNEGAGLSMTALELADEQVHIPCS-- 241

Query: 260 IKALNVSNAAAVALYITQNH 279
           +++LN + A +  +Y +   
Sbjct: 242 VESLNAAIAGSTLMYESFRQ 261


>gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
 gi|167660590|gb|EDS04720.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
          Length = 249

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 85/256 (33%), Gaps = 19/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            + + ++S   K R  ++       G   +     +  R + ++ A +           L
Sbjct: 4   AEIQLVRSLADK-RSRTEHGLFVAEGHKFIGELCTSALR-VRKIFALEG----------L 51

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V+TV  + ++++                   P        +L++ LD V +P N+
Sbjct: 52  FEGGEVETVSSREMERLS-LLKTPSDSLALVEIPHHPFRPDTAQRELVLALDQVQNPGNL 110

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F    I+ +   +   +  + ++  GA+  +     +              
Sbjct: 111 GTIIRLADWFGIPEIVCSPTTADCYNPKVVQATMGAILRVKVHYTALE--PYLAQARERN 168

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKAL 263
             +  +    + +          +++G EG+G+ P      +    +          ++L
Sbjct: 169 IPVYGTFLEGENIYSTPLTPGGIVLMGNEGQGIAPAAARHVSHKLFIPPYPADRNGSESL 228

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A AV     +  
Sbjct: 229 NVAIATAVVCAEFRRQ 244


>gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 196

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 59/151 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL +++DPHN+ AI RSA AF  D I      +P        SAS        
Sbjct: 20  RQKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPKLGSKSSASAKKWVKTI 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    +   +PL         A+I+G E  G+ P+      
Sbjct: 80  YHQSANKLIRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAGVPPELTGLVD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           S  ++ M G++++ NVS AAA+ L       
Sbjct: 140 SELYIPMYGMVQSFNVSVAAAIILAEASRQR 170


>gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 277

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 89/254 (35%), Gaps = 20/254 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL 87
           DY  +     + R           G   +  A          LL  K A   R   D   
Sbjct: 14  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLTPKWADVMRDVIDRAE 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQL 134
               PV  V P   +K+ G       LA      L    D                  + 
Sbjct: 74  A---PVYVVEPALAEKVTGYHVHRGALASMQRTPLPTAADVLRGVGTMPSSAPREAAVRR 130

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + V + + D  N+GA  R+A A   D ++ T R +        K + GA+ H+P+ R+++
Sbjct: 131 VAVFEDLVDHANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTS 190

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSM 251
                      GF T  L  D K    +     +++K+ L+LG EG GL      +A   
Sbjct: 191 WPQDAGIFREHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250

Query: 252 AHLHMPGIIKALNV 265
             + M G + +LNV
Sbjct: 251 VRIPMSGGVDSLNV 264


>gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 242

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            +   GV  V   L +    +  L  T   LA L  D       P        + +++G 
Sbjct: 1   MVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGF 58

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                 LA             V  ++ + VL+ VND  N+G+I R+A   S D ++    
Sbjct: 59  HLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTG 118

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ----E 223
            +        + + G    +PY R ++    L  +   GF+ + ++              
Sbjct: 119 CADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAA 178

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +++IAL++GAEG GL       +     + M     +LNV+ AAA+A Y    
Sbjct: 179 VSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 233


>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
 gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
          Length = 340

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 8/201 (3%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138
                  V+ V    + ++ G  +VHQG+AL+TA   +  L+A+ +         LL+ L
Sbjct: 14  AKASGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLAL 72

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GA++RSA A    G++  +R S   +   AK A+GA+EH+P  R+ NL  +
Sbjct: 73  DGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRS 132

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+K+   G++ IGL+++    L     +  + L+ G+E +GL   T+     +  + + G
Sbjct: 133 LEKLKDSGYRVIGLAAEGDVTLMDVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRG 192

Query: 259 IIKALNVSNAAAVALYITQNH 279
           I  +LN S A A+ +Y     
Sbjct: 193 ITPSLNASVATAMCVYEVARR 213


>gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
 gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
          Length = 243

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ AI+R+A A     +                +         
Sbjct: 15  QRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-HAVWPKTWIHKRKGTARGSQNWVDV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +     T   +   S         SDS             A+++G E  G+  +    A
Sbjct: 74  KLHPDIGTAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIGEEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA  LY  Q   
Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165


>gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 272

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 9/253 (3%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++D    +LR    DY  +     + R           G   +  A +        LL++
Sbjct: 7   IEDPDDPRLR----DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYAMRSMLLSS 62

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           K   A  D    LP   PV  V P+  +++ G       LA           + +  ++ 
Sbjct: 63  KWVDAMRDVIDELPA--PVYAVSPELAERVTGYHVHRGALASMQRKPEPDAAELLAGARR 120

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +PY R+  
Sbjct: 121 VAIMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDG 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSM 251
               L+ +   GF  + L+   K     E+     D++AL+LGAEG+GL  +    A   
Sbjct: 181 WPKGLEGVREAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALMAADEW 240

Query: 252 AHLHMPGIIKALN 264
             + M   + +LN
Sbjct: 241 VRIPMAHGVDSLN 253


>gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 42/285 (14%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLP 88
           KK ++   K R   + ++ F++G H+V  AL    R+   L      +     +    L 
Sbjct: 14  KKAKAHLSKERRLIKEDSEFVFGTHSVKNALATRKRECRALYVQNADIHSEFEEFLNKLQ 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-----------------------------LALETA 119
           +  P+K+V  + +++I      +                                +    
Sbjct: 74  YKIPIKSVNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHND 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                +  +     L + +D + DP N+GA++RSA      GI+ +K+++   S V++K+
Sbjct: 134 LNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKA 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQEIKNDKIA 230
           ++GALE      + N    L+     G++ IG             +   ++ E+ N+   
Sbjct: 194 SAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEPKI 253

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274
           L+LG+E KGLR       +    +      + +LNVS AA + LY
Sbjct: 254 LVLGSE-KGLRTNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLY 297


>gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 262

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 95/281 (33%), Gaps = 28/281 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS                   R++   K +      +     P  + L GVH   A 
Sbjct: 1   MKHISS------------------RDNPAVKALAKLAVTAGKRGAP--VLLEGVHLCQAW 40

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +       +   +              P          + + +      QG+A +  P
Sbjct: 41  LQHHGAPDQAIFDVERLSQPDIAALAAAVPDRDCLALDARLMQSLAAVESGQGVAFQVTP 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +    DAV  + +L   D + DP N+G +LR+  A     +      + + S  + +S 
Sbjct: 101 PVLDLPDAVDENCVL--FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRSG 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA      + I    D    +       +  + D  + L + +   + A + G EG+G+
Sbjct: 159 QGAHF---ALAIHEHVDLAALLPRLQIPLVATALDGARDLYEGVLPQRCAWVFGHEGQGV 215

Query: 241 RPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279
             +    A     +   M   +++LNV  AAA+ L+  +  
Sbjct: 216 AAELLAAARLKVRIPHDMA-AVESLNVGAAAAICLFEQRRQ 255


>gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 299

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
                    + ++    +       G + V +AL + S  +  L  T++AL     + + 
Sbjct: 31  PRIVNAAKLH-RAAVRRKTGRFLAEGSNAVMSALRHGS--VVDLFLTEDALDSFGRELDG 87

Query: 88  P-----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVL 138
                     V  +  +    +          AL  + L                +L V 
Sbjct: 88  LTGDDTRGVHVSLITDRAAHALSESVTSTGLFALCVSQLTDLDGVLASAGAGTPSVLAVP 147

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
               +P N GA++R A A    G+I        +     +S++G+L H+P  R +++ + 
Sbjct: 148 VETAEPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSRHTSIPEV 207

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI---------KNDKIALILGAEGKGLRPKTQETAT 249
           ++++H  G+  +  S D    L++              ++A + G E  GL    Q+ A 
Sbjct: 208 VERLHEQGYVVLATSGDGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGLGD-WQDLAD 266

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
               + M G+ ++ N+  AAAV LY T  
Sbjct: 267 VRVSIPMQGLAESFNLVTAAAVCLYETAR 295


>gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS]
 gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS]
          Length = 314

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 11/248 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99
               E   + G + V   L    P+  ++  + T+ +                +  VP  
Sbjct: 66  RKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADSGISILEVPRS 125

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            +D++    A+HQGL L+  P      D             LL+ LD+++DP N+GAI+R
Sbjct: 126 DLDRMS-NNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIVR 184

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q +GL
Sbjct: 185 SVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGL 244

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +D    L++      + +++G+EGKGL    +E   ++  + M G  ++LN S AA V 
Sbjct: 245 DADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVV 304

Query: 273 LYITQNHF 280
           L       
Sbjct: 305 LAEIARQR 312


>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 249

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 8   NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + + +L++ L+++ +P 
Sbjct: 64  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +       ++   +K A        Y   +            
Sbjct: 119 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +            + I      +I G EGKG+  K  + A    ++ +    ++LN+
Sbjct: 177 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 234

Query: 266 SNAAAVALYITQNHFAK 282
           ++A A+  +       K
Sbjct: 235 ASANAIFCHFF--QLKK 249


>gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 196

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 59/151 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL +++DPHN+ AI RS  AF    +      +P        SAS        
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSASARKWVETE 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                   A               S S +PL +       A+I+G E +G+  +  E   
Sbjct: 80  RHEDPAQLAAALRKKGCRILATSCSPSARPLREWDMTGPTAIIMGNEHRGVDAELMEIVD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G+I++ NVS AAAV L       
Sbjct: 140 GEVYIPMFGMIQSFNVSVAAAVILSEASRQR 170


>gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
 gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
          Length = 234

 Score = 91.8 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + L+ V+  HN+ AI+R+A A     +      + +       +        
Sbjct: 14  NYRQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDV-HATWENKTTQISGNTATGSQNWVN 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +                    SDS     +       A+++G E  G+ P+    
Sbjct: 73  LHSHETLEDAVKALRAQGMQIIATNLSDSAIDFREVDYTKPTAILMGQEKHGISPEALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G+ ++LNVS A+A+ LY  Q   
Sbjct: 133 ADQDVIIPMVGMCQSLNVSVASALILYEAQRQR 165


>gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
 gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
          Length = 244

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------------PVKTVPP 98
           LYG+  V AAL    R ++ L        +                        V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYIQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    +         +  + + + LD V DP N GAIL
Sbjct: 63  HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210
           RS+  F   G++   + S   S V++K+++GALE I  +   N+         +      
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             +S   + L    KN    L+LG EG G+RP     A  +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALYIT 276
           V L+  
Sbjct: 239 VLLHEL 244


>gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 281

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 108/281 (38%), Gaps = 23/281 (8%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S+ D    +L     D + + S +++         +   G + V   L      +  ++ 
Sbjct: 6   SITDPADPRLD----DIRDLNSSDRRPDLPGGRGLVIAEG-NLVVPRLAASRFPVRCVMG 60

Query: 74  TKNALARLDWDANL-------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               L  L+  A+            P+  V  + + ++ G + +H+GL      +  PT+
Sbjct: 61  FARRLEELEDAASADPAVAAGLADVPIYEVSREVLAEVAGFD-MHRGLVAAADRVGEPTV 119

Query: 127 DA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                    +++++ VL+ V D  NIGA+ R+A       ++     +      + + + 
Sbjct: 120 GEVLDGLDEDNRVIGVLEGVGDHENIGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSM 179

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAE 236
           G +  +P+  +       Q+  +   +            +  + +     DK+A+++GAE
Sbjct: 180 GHVLRVPFAHVPGKPTTWQRGLADLQERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAE 239

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL       A   A + M     +LNV+ +AAV  Y  Q
Sbjct: 240 GPGLTEHAMRAADVRAKIPMSPGTDSLNVATSAAVGFYAAQ 280


>gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
 gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
          Length = 245

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V+ P N+ AI+RS  AF     +          A    +         +
Sbjct: 16  RQPDLSVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPREGFRAFRKTAGGSYNWVTTH 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +             SD      +        +I+G E  G+     E A 
Sbjct: 75  THPTMDDAVSELKGQGHKLYAAQLSDRAIDYREADFTVPCTVIMGNEVDGVSHGAAEQAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS+A A+ L   Q    
Sbjct: 135 EHIVIPMMGMVESLNVSSACAIILSEAQRQRK 166


>gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 263

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A        + 
Sbjct: 12  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRDLKPKVAVFAQSFWPQAPEE 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  +     D+I   E+  +        +        ++    +VLD V D
Sbjct: 72  WVQAASKVVV--LADALFDEISSLESPARMG----YVMDWDAALQAQSGIATVVLDRVQD 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    I+  K  +   S  + ++  GA              +++ + 
Sbjct: 126 AGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF----GLHLVEAASVEDVK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  SS     + +       A  +G EG+G+     E A     +  PG  ++L
Sbjct: 182 ALQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGEALMEMAQRRISIAQPGGEESL 241

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 242 NVAAAAAICLHA 253


>gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 8/244 (3%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-DANLPHPFPVKTV 96
           +      +       G   + A + +   ++  LL       +L+   A+LP   PV   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFVRDALERVVSLLIDPKRRDKLEDVFASLPEDVPVHFA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
               +D I G       LA+   P     +  L  +    +++VL  + +  NIG I R+
Sbjct: 82  DQAVLDSIAGFHLHRGVLAVGRKPQPVAANALLAGLPARAVVLVLCGIANHDNIGGIYRN 141

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  D +I              + + GA   +P  R+    D    + + GF+ + LS
Sbjct: 142 AAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPTARLGRGEDIADLLANTGFEALALS 201

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + + L +     + A++LGAEG GL P     A     + M     +LNV+  + + L
Sbjct: 202 PSASEVLARLKPAPRTAVLLGAEGPGLSPDVMARA-RTVGVPMAKGFDSLNVATTSGIVL 260

Query: 274 YITQ 277
           +  +
Sbjct: 261 HHLR 264


>gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia
           coli [Photorhabdus asymbiotica]
          Length = 338

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 96/313 (30%), Gaps = 39/313 (12%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR----------------------- 41
             + S K  S K     + RR++    +     ++ R                       
Sbjct: 24  DSRSSNKRPSGKGRDQGQRRRDNERSSRSPRLTERERSPWKTVSRPESDSLMPEHNGISG 83

Query: 42  ---------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP 90
                       + E   +YG +   A   N S  I +    ++   R          + 
Sbjct: 84  KSQIDPEQLRRQRMEETRIYGENACQAMFKNRSEAIVRAWFIESVTPRFRNALKWMAANR 143

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146
                V    + K+ G E  H G+               L        ++ L+ V +PHN
Sbjct: 144 KAYHVVDEAELTKVSGTE-HHGGVCFLIKKRSGLDVETYLKDAPVKDCVLALEDVGNPHN 202

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI+RS   F   G++          A +  +  GA         S  T   +   +  
Sbjct: 203 IGAIMRSCAHFGVQGVVLQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRKAGY 262

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                 S      L +    +K+ L+LG E  GL   T E       +   G++++LNVS
Sbjct: 263 TIVTTSSHKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDMSLFVGGTGLVESLNVS 322

Query: 267 NAAAVALYITQNH 279
            A  + L      
Sbjct: 323 VATGIMLAEWWRQ 335


>gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 248

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ AI+R+A A     +                +         
Sbjct: 15  QRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-HAVWPKTWIHKRKGTARGSQNWVDV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +     +   +   S         S+S             A+++G E  G+  +    A
Sbjct: 74  KLHPDIGSAVAELKASGMQIVATHLSESSVDFRTIDYTRPTAILVGQEKHGIGEEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA  LY  Q   
Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165


>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
 gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus]
 gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 418

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 90/313 (28%), Gaps = 50/313 (15%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEY 151

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135
           +  L  D         VK    +    +V  + +       +   +  P         L+
Sbjct: 152 VKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLV 211

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---------- 185
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA            
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEW 271

Query: 186 -----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------- 227
                H+P      + D                 D          +              
Sbjct: 272 ETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDW 331

Query: 228 ----------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSN 267
                             A+++G E  G+  ++ + A         + +   + +LN + 
Sbjct: 332 LPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAM 391

Query: 268 AAAVALYITQNHF 280
           AA++ L+  +   
Sbjct: 392 AASILLFEGKRQL 404


>gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 243

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   + ++ +++    N  A++R   AF    + T +   P E        +     + 
Sbjct: 50  MRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCPFEPNPDIARGTHQWVDVR 109

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    A  K   +         +   P   ++     AL+ G E  G+  +   +A
Sbjct: 110 RHASTGEAVAALKGAGYRIVATTPHREDATPETFDVGRGPFALVFGTEHAGISDEVIASA 169

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278
                + M G++++LNVS +AA+ +Y       
Sbjct: 170 DEFLRIPMCGMVESLNVSASAAILIYTLSERMR 202


>gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
 gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
          Length = 196

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 66/151 (43%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+++++DPHN+ AILRS  AF    +      +   +     S S        
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETI 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 + A             L S++ +PL+      K+A+ILG E +G+         
Sbjct: 80  RHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDEDLAPHVD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G++++LNVS AAAV LY      
Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQR 170


>gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
 gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 217

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 2/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHI 187
           R   L +VL++V+DPHN+ A+LRS  A     +    T    P  S  ++ SA   LE +
Sbjct: 20  RQPDLTVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFPELSENVSGSALKWLELV 79

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  I      L+      + T          L        +AL+ G E +G+  +    
Sbjct: 80  FHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGVSDEAVAG 139

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LN+S A AV+LY      
Sbjct: 140 ADGNFVIPMMGMVRSLNISVACAVSLYEALRQR 172


>gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +            +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKEGMRVLSHTSAGARNWVELD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S +                  SD+     +       A+ILG E  G+  +    A 
Sbjct: 75  THDSMVEAVQALKDQGMQVLATNLSDTAIDFREVDYTKPTAIILGGEKNGITAEALSMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori
           v225d]
          Length = 227

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum
           SS9]
          Length = 234

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +        +   +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV-HAVWPKENMRVLSHTSAGARNWVELD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              + +    Q             SD+             A+ILG E  G+  +    A 
Sbjct: 75  THDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAQAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 249

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 8   NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + + +L++ L+++ +P 
Sbjct: 64  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +       ++   +K A        Y   +            
Sbjct: 119 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +            + I      +I G EGKG+  K  + A    ++ +    ++LN+
Sbjct: 177 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 234

Query: 266 SNAAAVALYITQNHFAK 282
           ++A A+  +       K
Sbjct: 235 ASANAIFCHFF--QLKK 249


>gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 25/274 (9%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           ++   +  +++ Q+     +   +     + GV  ++ A     R    L+     L+R 
Sbjct: 6   RVASRNARFQQWQTLLTNRQKRQRAGRFLVQGVRPLTLAAEQGWRIEELLVDDDRRLSRW 65

Query: 82  DWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLM 136
             D   A       V  +P   + ++  K+       L    +    L  ++  ++ L +
Sbjct: 66  AEDFLDAAHTADADVIALPADMLAELGEKDQEAAPELLAVVAMPPDDLIRIQITDTFLGV 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
             D    P N+G ++RSA AF  DG++ T   +        ++++G+L  +P +R  +  
Sbjct: 126 AFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLPTVRTQSHR 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + L+ +   G   +G   D    +E          ++G E  G+    +E    +  + M
Sbjct: 186 EVLEWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGWREACDRVLSIPM 245

Query: 257 PGI----------IKALNVSNAAAVALYITQNHF 280
            G                      V LY      
Sbjct: 246 RGTASSLNAANAAT----------VVLYEAARQR 269


>gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
 gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
          Length = 230

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A       
Sbjct: 14  NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTSRMKTLVSTAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +    A               S                ++LG E  G+  +    
Sbjct: 73  VKTHRTIQDAARHLKTQGMQILATNLSADAVDFRDVDYTRPTCILLGQEKTGISGEALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
 gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
          Length = 227

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + +  
Sbjct: 4   VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLARGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
 gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
          Length = 229

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus
           denitrificans PD1222]
          Length = 265

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 12/230 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--I 104
           E ++L+G+H V  AL NP R+  +L+ T+NAL RL     LP     + V  +T D+   
Sbjct: 27  ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRLGP---LPPDLAHEIVDARTFDRAVP 83

Query: 105 VGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  E+VHQG ALE  PL   +L           LL+ LD V DPHN+GAILRSA  F   
Sbjct: 84  LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I   R+S  E+  LAK+ASGALE  PY+R++NL D L ++ S G+  +GL     + L
Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203

Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            + +++     I L+LGAEG GLR +T+ET   +  +       +LNVSN
Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253


>gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C]
 gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C]
          Length = 271

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 9/253 (3%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++D    +LR    DY  +     + R           G   +  A +        LL+ 
Sbjct: 7   IEDPDDPRLR----DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSA 62

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           K      D    LP   PV  V P   +++ G       LA      L    + + +++ 
Sbjct: 63  KWVDVMRDVIDELPA--PVYAVSPDLAERVTGYHVHRGALASMQRKPLPTAQELLASARR 120

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + V++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +PY R+  
Sbjct: 121 VAVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEA 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSM 251
              +L  +   GF+ + L+   K            D++AL+LGAEG GL  +    A   
Sbjct: 181 WPKSLDTVREAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAADEW 240

Query: 252 AHLHMPGIIKALN 264
             + M   + +LN
Sbjct: 241 VRIPMAHGVDSLN 253


>gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 152

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A   +  +            L ++       +      + 
Sbjct: 3   VVLVHPQIPPNTGNIARTCAATQTELHLVEPLGFELSDRYLKRAGLDYWPFVHLTCHPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q +   G + IG  +  +    Q        L+ G+E  GL  +         ++ 
Sbjct: 63  PSFTQVVAKRGGRLIGFDTTGESNAFQFKFAADDWLLFGSETDGLPAEVLVACDDTVYIP 122

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + A+ L+  +   
Sbjct: 123 MGQPGVRSLNLSVSVAIGLFEARRQL 148


>gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ]
          Length = 252

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 18/242 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP---VKTVPPQTIDKIV- 105
            + G+H+++ A+ N    + +++AT   L        L        VK V P  + K+  
Sbjct: 6   LIVGIHSIAEAITNRPSAVRKIIATAEGLKEFRKKTRLDKEIKQFDVKIVSPHDVQKMAE 65

Query: 106 --------GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAIL 151
                     + V   + +   P+ +  L              ++ LD V D HN  AI+
Sbjct: 66  QFYKELELSFQRVPSQIFMVVDPVETYDLAWLYDQIDKSPRYKILCLDQVTDVHNAAAIM 125

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A  +  D ++T  +         A+ ASGA+EH+  +  S+L  A+ K+       IG
Sbjct: 126 RTAAFYGVDCVVTGAKGHFGTGPSFARIASGAIEHVNIVICSSLPKAITKLIEKNVSVIG 185

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S  +K+  +    +  +AL+LGAE  G+             +   G IK+LNVS AAA+
Sbjct: 186 FSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVAAAI 245

Query: 272 AL 273
           A+
Sbjct: 246 AM 247


>gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 219

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +        S   +++ +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSNSWVNVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 T   +             S +     +        +++G E +G+  +  + A 
Sbjct: 64  THRDIATAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 217

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 2/154 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL--AKSASGALEHI 187
           +   L + LD V+D  N+ A++R+A A     I   +             + A   L   
Sbjct: 24  KQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIFYARNNPQHVPVHTLVTQGAHRWLRRH 83

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                       +K        +    ++              L+LG E +G+ P+    
Sbjct: 84  RIPYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNEREGVSPEVLAE 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A+    + M G++++LN+S AAA+ LY  +    
Sbjct: 144 ASHSVIIPMHGMVQSLNISVAAALILYEAERQRK 177


>gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 254

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 82/263 (31%), Gaps = 18/263 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A L +N    K + S   K +   +       G   V   L         L AT +    
Sbjct: 2   ASLSKN--KIKFIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       +  V  + + +        Q +                 S L + LD 
Sbjct: 57  HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLAPEAVRSSLCLALDD 111

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F  + II ++      +    ++  G +  +     S       
Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
            + S G   +  +    K + ++       +++G EG G+  +         ++      
Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLTANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227

Query: 259 --IIKALNVSNAAAVALYITQNH 279
               ++LNV+ A AV     +  
Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250


>gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
 gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
          Length = 227

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9]
          Length = 267

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +        +   +   SA         
Sbjct: 49  RQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV-HAVWPKENMRVLSHTSAGARNWVELD 107

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              + +    Q             SD+             A+ILG E  G+  +    A 
Sbjct: 108 THDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAQAD 167

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 168 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 198


>gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 212

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 50/153 (32%), Gaps = 2/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL++V+DPHN+ A+LRS  A     +                S S        
Sbjct: 22  RQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLVYTIEEFPDLSKNVSGSALKWLEII 81

Query: 190 IRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                                           L         AL+ G E +G+  +    
Sbjct: 82  KHKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKPTALVFGNEQRGVSEEASRL 141

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LN+S A AV LY      
Sbjct: 142 ADGNFVIPMMGMVQSLNISVACAVTLYEALRQR 174


>gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 267

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 4/240 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           +Y ++     ++R+  +           +  A+    R     L     LA +       
Sbjct: 16  EYTRLTDVRLRTRYEPEHGLYMAESSTVIRRAVAAGHRP-RSFLMAPRWLADMTEVTTAF 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +  ++ + VL+ V D  N+G
Sbjct: 75  PEAPVFVADEALLEQVTGFHLHRGALAAMHRPPLPAARDLLAGARRVAVLEDVVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ RSA     D ++ T R +        + + G +  +P+ RI      + ++   GF 
Sbjct: 135 AMFRSAAGLGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIEEWPAGMDELRGAGFT 194

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L+         E      +++AL+LG EG GL P T   A  +  + M G + +LNV
Sbjct: 195 VAALALADDAVTLDELASSPPERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254


>gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 228

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 74/224 (33%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      I  +   K                 +K        + + +  
Sbjct: 2   VVYGKHIVELILLKYQYLIENIYLAKEVDKSFFGLLKKTKKQIIKL--DAKKAQAMARGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  LE  PL       ++    ++VL  ++D  N+G+I RSA A   DGI+      
Sbjct: 60  NHQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKD 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +  VL  S+      +                          +  +    Q   + K 
Sbjct: 120 FKQEGVLRASSGA---MLGMPFCVVHNPLDVINELKQSDFTLFGTSMQGKDLQNALSGKK 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+EG GL  K          + M     +LNV  A A+ +
Sbjct: 177 ALFLGSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILI 220


>gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
 gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
          Length = 250

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 16/257 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K ++  Q       G   V   L     +   L+AT+  LA        P
Sbjct: 6   KIKFIKSLQLK-KNREQTRLFIAEGHKLVEELLAMS--RAHTLVATQEWLANHS----AP 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V    + K+   +   Q L L   P  +    A+  S L ++LD + DP N+G
Sbjct: 59  PADEVIEVTSDELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNLG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  ++  +   +  + ++  G++  +     +      Q        
Sbjct: 117 TIIRIADWFGINDIYCSQETADMYNPKVIQATMGSITRVRLHYGALEPMLRQ---LPADF 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            I  +      +  E  +    +I+G EG G+  + ++       +          ++LN
Sbjct: 174 PIYGTLLEGNDIYSEQLSAHGLIIMGNEGNGISAQVRQMVNCPLLIPNYPPNTPTAESLN 233

Query: 265 VSNAAAVALYITQNHFA 281
           V+ A A+     +    
Sbjct: 234 VAIATAITCAEFRRRIK 250


>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 254

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A L +N    K + S   K +   +       G   V   L         L AT +    
Sbjct: 2   ASLSKN--KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       +  V  + + +        Q +                 S L + LD 
Sbjct: 57  HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F  + II ++      +    ++  G +  +     S       
Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
            + S G   +  +    K + ++  +    +++G EG G+  +         ++      
Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227

Query: 259 --IIKALNVSNAAAVALYITQNH 279
               ++LNV+ A AV     +  
Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250


>gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
 gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
          Length = 230

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A       
Sbjct: 14  NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTSRMKTLVSTAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S                ++LG E  G+       
Sbjct: 73  VKTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDVDYTRPTCILLGQEKTGISADALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
 gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
          Length = 229

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 1/164 (0%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             +E        +   R+  + +V++ + D  N+ A  RSA A     +      S    
Sbjct: 153 YIMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRY 212

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALI 232
                 + GA + +     ++  +  + + S G++              ++      A++
Sbjct: 213 KDNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIV 272

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G E +G+  +  E +     + M G++ + NVS AA + ++  
Sbjct: 273 VGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 316


>gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103]
 gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103]
          Length = 233

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S       + SA         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVNVV 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    S       +        +++G E  G+  +    A 
Sbjct: 75  THRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 RHIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 254

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A L +N    K + S   K +   +       G   V   L         L AT +    
Sbjct: 2   ASLSKN--KIKYIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       +  V  + + +        Q +                 S L + LD 
Sbjct: 57  HPGIDAN----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F  + II ++      +    ++  G +  +     S       
Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
            + S G   +  +    K + ++  +    +++G EG G+  +         ++      
Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227

Query: 259 --IIKALNVSNAAAVALYITQNH 279
               ++LNV+ A AV     +  
Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250


>gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14]
 gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium
           HF0070_30L02]
          Length = 254

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 103/255 (40%), Gaps = 11/255 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDW 83
            +    +++    +        ++ + G  TV  AL+   +    ++    ++  + +  
Sbjct: 8   QNPRVAELRRLIGRRSSR--SGDIVIEGPRTVGEALDAECQPSVVIIPEHAEDDASVVAV 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  LP       V     +++         LA+   P             +++VL  + D
Sbjct: 66  ERRLPASVEFLLVRDHVFERLTPSTTPQPMLAIVARP----VASLPAAPSVVLVLAGIGD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A +    +     +        ++++G++  +P ++   L D +  + 
Sbjct: 122 PGNLGTLVRAADAVA-ADAVVVVGGADPWGPKAVRASAGSMLRVPIVQYDQLDDTVDALR 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +G      +P +Q + +  +A+++G+E  GL         + AH+ MPG  ++L
Sbjct: 181 EAGVTVVGTDVTGGEPFDQGVLDRPVAIVMGSEPHGLDRGV--DLDAWAHIAMPGRTESL 238

Query: 264 NVSNAAAVALYITQN 278
           NV+ A  + LY    
Sbjct: 239 NVAMAGTLLLYEASR 253


>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 251

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 99/249 (39%), Gaps = 13/249 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 10  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + + +L++ L+++ +P 
Sbjct: 66  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 120

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +       ++   +K A        Y   +            
Sbjct: 121 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 178

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +            + I      +I G EGKG+  K  + A    ++ +    ++LN+
Sbjct: 179 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 236

Query: 266 SNAAAVALY 274
           ++A A+  +
Sbjct: 237 ASANAIFCH 245


>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
          Length = 229

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYAHICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
 gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
          Length = 196

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+++++DPHN+ AILRS  AF    +      +   +     S S        
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETT 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 + A               S++ +PL++     K+A+ILG E +G+  +      
Sbjct: 80  RHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGNEHRGVDEELAPYVD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G++++LNVS AAAV LY      
Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQR 170


>gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14]
 gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14]
          Length = 241

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +            +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKEGMKVLSHTSAGARNWVELD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S +                  SD+             A+ILG E  G+  +    A 
Sbjct: 75  THDSMVEAVQALKDQGMQVLATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEALAMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
 gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
          Length = 218

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +        +++G E  G+  +    A 
Sbjct: 64  THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 269

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 5/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     +             G   +  AL         LL+ K A A       + 
Sbjct: 17  DYSGLTDVELRKVREPAEGLFLAEGEKVIRRALAAGYPMRSTLLSPKWAQAMRPLIEEV- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++ + G       LA      +S     +  ++ ++V++ + +  N+G
Sbjct: 76  -DAPVYVGSEALLEAVTGFHVHRGALASMQRTPVSEAGAVLAAAKRVVVMEDIVNHTNLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSW 205
           AI RSA A   D  + T   +        + + G   AL +            L +    
Sbjct: 135 AIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARLDSWPGGLTTLAEHGFR 194

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   +       +    DK+AL+LG EG GL       A     + M   + +LNV
Sbjct: 195 TIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMRVRIPMTAGVDSLNV 254


>gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 235

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 7/228 (3%)

Query: 58  SAALNN---PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL      +  + ++ AT +       D       PV+ V  +    +         +
Sbjct: 2   REALAAHAEGATAVREVFATGDPRHDELLDTARAASVPVRLVTERAAASLSETVTPQGLV 61

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+   P  +          L+ VL  ++DP N G ++R A A     ++       + + 
Sbjct: 62  AVCDLPATAVADALAARPALVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNG 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIA 230
              ++++G+L H+P  R  +++         G + +G    +   L+            A
Sbjct: 122 KAVRASTGSLFHLPVARDRDVSAVFAACREAGLRLVGADGHATDDLDSADLGGALAAPTA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + G+E  GL             + + G  ++LN++ AAAV LY +  
Sbjct: 182 WVFGSEAHGLPGDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASAR 229


>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
          Length = 261

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 21/251 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFP-- 92
           SR +SQ    +LYG++ V +AL    R   QL   +         R+    N        
Sbjct: 8   SRFSSQKSYDYLYGINPVMSALYANKRSFTQLYVNQTQQNDYINPRVSNILNRAQSLKLD 67

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+ +P   +++    +     +   +       L    N  LL   D V DP N GAILR
Sbjct: 68  VQMIPKNKLERYCSNDHHQNVILKCSKLNYCNQLPDESNFVLL---DSVQDPQNFGAILR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
                  + +I  K+     S  ++K+++GALE +      NL + +++           
Sbjct: 125 VCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANFVKQRKHEFQVIGSG 184

Query: 213 SSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGI-------IKA 262
              +  P+++  K+    K  +I G+E  G+R +  +   ++ ++ M          + +
Sbjct: 185 FESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNI-MTSRHTFPETLVDS 243

Query: 263 LNVSNAAAVAL 273
           LNVS +A + L
Sbjct: 244 LNVSVSAGIIL 254


>gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis
           AJ13355]
          Length = 233

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S       + SA         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSQRMRTQASASAGSNSWVNVV 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    S       +        +++G E  G+  +    A 
Sbjct: 75  THRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 RHIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
 gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
 gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
 gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
          Length = 218

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +        +++G E  G+  +    A 
Sbjct: 64  THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 372

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 1/164 (0%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             +E        +   R+  + +V++ + D  N+ A  RSA A     +      S    
Sbjct: 156 YIMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRY 215

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALI 232
                 + GA + +     ++  +  + + S G++              ++      A++
Sbjct: 216 KDNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIV 275

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G E +G+  +  E +     + M G++ + NVS AA + ++  
Sbjct: 276 VGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 319


>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
          Length = 420

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 95/315 (30%), Gaps = 52/315 (16%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   +S AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135
           L  L  D         VK    +    +V  + V    A      +  P      +  LL
Sbjct: 152 LKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGVMGIFAKPDHVKMTYPKTQLQHSLPLL 211

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I     
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEW 271

Query: 196 -----------------------------------TDALQKMHSWGFQ-----------T 209
                                                  Q++  +               
Sbjct: 272 ETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQ 331

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265
             L     +  + +      A+++G E  G+  ++ + A         + +   + +LN 
Sbjct: 332 DWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNS 391

Query: 266 SNAAAVALYITQNHF 280
           + AA++ L+  +   
Sbjct: 392 AMAASILLFEGKRQL 406


>gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 286

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 99/281 (35%), Gaps = 11/281 (3%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I     S     R   + +++  S    S   S+ E   L GV  V   L     +I  +
Sbjct: 2   ITEKNTSPRKAFRSAPKAFEQDASLENASCSDSKEEQAVLSGVKPVLELLEREPERIDAV 61

Query: 72  LATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---- 124
           L  K   ++      D              Q++D++           L  A         
Sbjct: 62  LVRKGKRSQDTDRILDLCRTAKVRFTLADAQSLDRLCPAGHQGVVARLFEAGFTEFADLL 121

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T        L++VLD V DP N G + R+  A    G++  +       A   ++A+GAL
Sbjct: 122 TDATDAPLPLILVLDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGARRAAAGAL 181

Query: 185 EHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           E +P  ++ N+  A  +   +          +          +    L+LG E  G+RP+
Sbjct: 182 ERLPVAKVMNIARALDEARDAGFLIYGAAFGEGSLDAFTTRLHTPALLVLGNEEHGIRPQ 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNHFAK 282
             +    + H+ M     +LNV+ A  +    +  + H  K
Sbjct: 242 VAKRCHHLLHIPMLRTFDSLNVAQAGGILTSCF-ARQHLEK 281


>gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
 gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
          Length = 325

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 23/243 (9%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGKEA 109
           G   V   L     ++ +LL  +                    ++ V  +  D ++G   
Sbjct: 80  GERAVVELLRASPTRVRRLLLEEGRRFESLEALAAEALGERVTIERVEREIFDDLIG-PG 138

Query: 110 VHQGLALETAPLLSPTLD----------------AVRNSQLLMVLDHVNDPHNIGAILRS 153
           + +G+   T P      +                  R  +++++LD V DPHN+GA++R+
Sbjct: 139 LARGVLAVTRPPRRWDFEALLEGGPEAEGGEAVRTRRGHRIIVLLDGVQDPHNLGAVIRN 198

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    ++  +  +   SAV  +S++GA E +P  +++N+  AL++  + G   +  +
Sbjct: 199 AEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQVTNVARALEQAKASGTWWVVGT 258

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +     E   D    + L+LG+E +G+R  T+E    +  +   G + +LNVS A A
Sbjct: 259 VVDEGTPVHEFAQDPPSDMILVLGSEERGMRRLTRERCDFLVTIARGGSLGSLNVSAAGA 318

Query: 271 VAL 273
           VAL
Sbjct: 319 VAL 321


>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 251

 Score = 91.4 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 100/257 (38%), Gaps = 15/257 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 10  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + + +L++ L+++ +P 
Sbjct: 66  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 120

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +       ++   +K A        Y   +            
Sbjct: 121 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 178

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +            + I      +I G EGKG+  K  + A    ++ +    ++LN+
Sbjct: 179 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 236

Query: 266 SNAAAVALYITQNHFAK 282
           ++A A+  +       K
Sbjct: 237 ASANAIFCHFF--QLKK 251


>gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 260

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 6/236 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +        V   L +       LL T   L +            V     + +++
Sbjct: 26  DKDGSFVADSPRVVGQLLGSGLE-FKSLLCTPEYLEKERERIEAAGVPKVYLGSRELLER 84

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           IVG    H              +        +++L  +N+  N+GAI RSA A    G +
Sbjct: 85  IVGHSIHHNV---MAHLKRPTNVPLEELPDRVVMLTRLNNLENVGAIARSAAALGVGGYV 141

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL--E 221
                         + ++G +  +      ++   ++++   G+  +   +  +      
Sbjct: 142 VPSSGPHPYGRRAIRVSTGHVTRLKVHCYEDILQTMERLRELGYTLLAAEATPEAVPLAR 201

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 + ALILG E +G+  +  E   ++  + M   IK+ NV+ A A+ +Y  +
Sbjct: 202 FGPVPKRWALILGNEEEGVPEEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257


>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
 gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
          Length = 229

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
 gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
          Length = 229

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  ++  + + +  
Sbjct: 2   IVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKS-AQALARGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  ++           ++ S+ +++L  ++D  N+GAI+R+A A   DG++   +  
Sbjct: 60  NHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFIGKNL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +S+SGA   +P    ++   AL ++    F+  G     ++         K 
Sbjct: 120 AQE--SIVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            LI+G+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
          Length = 220

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ PHN+ AI+R+A A     +      +     +++ +A         
Sbjct: 5   RQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTTRMRTLVSSAAGSNSWVNVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    S                ++LG E  G+  +  + A 
Sbjct: 64  THRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQEKSGISEEALQLAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
 gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
          Length = 229

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 291

 Score = 91.1 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%)

Query: 1   MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D            +           +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+  K       +    L  + +    FP+       + ++ G   +  
Sbjct: 54  AIRAGYEPIAMLVEEKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRG 113

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +            +          + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223
                   + + G +  +P+  +             Q++           +         
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
          Length = 252

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 99/249 (39%), Gaps = 13/249 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 11  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + + +L++ L+++ +P 
Sbjct: 67  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LENIQNPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +       ++   +K A        Y   +            
Sbjct: 122 NLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFKFGPKQE 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +            + I      +I G EGKG+  K  + A    ++ +    ++LN+
Sbjct: 180 IIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLNI 237

Query: 266 SNAAAVALY 274
           ++A A+  +
Sbjct: 238 ASANAIFCH 246


>gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 242

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 24/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   +       G   VS  L +      ++L     + ++ +  +  
Sbjct: 6   RTKLIRSLETK-KGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHPQ 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  +P +  +                              QL++ LD V DP N+G
Sbjct: 64  SVLGIFKMPEEADETSKDYSKT---------------FHEHIEGQLVLALDGVQDPGNLG 108

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  D I  +   +   +  + ++  G++  +    +            +   
Sbjct: 109 TIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPIDYPVY 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALN 264
              L                  +++G EG G+ P  +        +          ++LN
Sbjct: 169 ATLLDGKDLYTQP---LTAHGMIVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESLN 225

Query: 265 VSNAAAVALYITQNH 279
           V+ A ++     +  
Sbjct: 226 VAVATSIVCAEFRRR 240


>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
          Length = 420

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 93/317 (29%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   +S AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L  D        +  V  + I            + +   P    +  P      +  
Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK         + ++  GA   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRAGMGAHFRMPIINNL 269

Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208
                                                    Q++  +             
Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329

Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
               L     +  + +      A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
 gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
 gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115]
 gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer
           ribonucleate guanosine 2-methyltransferase) [Deinococcus
           deserti VCD115]
          Length = 222

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 5/157 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +++D VN PHN+ AI+R+  A                ++    +         
Sbjct: 16  HRQPTLTVLMDEVNKPHNLSAIIRTCDAVGVLEAHAVPPKGGPLASFSGHTYEATSGSAH 75

Query: 189 YIRISNLTDA-----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                +                        S       +        ++LGAE  G+  +
Sbjct: 76  KWVPVHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTRPTCVLLGAEKWGVSDE 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS AAA  L+  Q   
Sbjct: 136 AADAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQR 172


>gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 246

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 2   RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ + +PHN+G ++RS  
Sbjct: 62  ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SS 
Sbjct: 121 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRHAGYTVVMTSSV 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL      +K+ L+LG E + L             +   G ++ LNVS A  V L  
Sbjct: 180 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCVAIDGTGNVETLNVSVATGVLLAE 239

Query: 276 TQNH 279
               
Sbjct: 240 WWRQ 243


>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 250

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 10/241 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKT-VPPQTID 102
           +P+ L + G+  V A        I +L        R+      L     +   V P  ++
Sbjct: 2   KPKELTICGLAAVRAQFAADPGAIKRLYFDYATGRRIGVICRTLAQRKKIYRCVEPAELE 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K VG    H G+                    V+  + L+VLD + + HN+GAI R+A  
Sbjct: 62  K-VGGTLHHGGIVAVVEAPEMREPAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAAF 120

Query: 157 FSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           F    +I  +  +    S    + A G + H+   R+ +L   L+ + + G+  IG ++ 
Sbjct: 121 FGLPRLILPRDPAAAQPSEAAYRVAEGGMTHLELARVDDLPAFLRSLVAAGYDVIGAATR 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              P  Q      IAL+LG E  GL  +     T +  +   G +++LNVS A AV ++ 
Sbjct: 181 GGLPQAQSHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWE 240

Query: 276 T 276
            
Sbjct: 241 L 241


>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 89/313 (28%), Gaps = 50/313 (15%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEY 151

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135
           +  L  D         VK    +    +V  + +       +   +  P         L+
Sbjct: 152 VKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLV 211

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---------- 185
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA            
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEW 271

Query: 186 -----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------- 227
                H+P      + D                 D          +              
Sbjct: 272 ETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDW 331

Query: 228 ----------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSN 267
                              +++G E  G+  ++ + A         + +   + +LN + 
Sbjct: 332 LPKLEVQSYDLDWTGAPAVVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAM 391

Query: 268 AAAVALYITQNHF 280
           AA++ L+  +   
Sbjct: 392 AASILLFEGKRQL 404


>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
 gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
 gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
 gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
 gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
 gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
 gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
 gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
 gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
 gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
 gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
 gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
 gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
 gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
 gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
 gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
 gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
 gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
 gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
 gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
 gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
 gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
 gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
 gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
 gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
 gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
           ECD227]
 gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1044]
 gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
 gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           2747-71]
 gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
 gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
 gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
 gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASTAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD+     +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILMGQEKTGITKE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALELADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 231

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + LD V+  +NI A++R+A A     I                ++        
Sbjct: 15  NRQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQI-HAVWPDIEMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    S++     +       A+ILG E  G+  +    A
Sbjct: 74  IKHYHMDDAQQAFRAQNMQVLATTFSETAVDFREIDYTRPTAIILGNERDGVSQEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G++++LNVS A+A+ +Y  Q    
Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQRT 166


>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
 gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
 gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
 gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
 gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
 gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
 gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
 gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
 gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
 gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
 gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
 gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
 gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
 gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
 gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
           83972]
 gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
 gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
 gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 281

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  +     + R           G   +  AL    R    +L + N L  +   A L
Sbjct: 30  ADYVALTDVVLRRRKEPAEGLFIAEGERVIQRALRAGYRA-RSVLVSPNRLDAVP--AEL 86

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV    P+ + KI G E     LA           + +  +  ++VL+ +    N+
Sbjct: 87  GPEVPVYLAGPELMAKITGFEVHRGALAAMARHPARDPAELLSWALRVLVLEDLVSHTNL 146

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHIPYIRISNLTDALQKMHS 204
           GA+ RSA     D I+ + R +        + + G   A+ +          D L     
Sbjct: 147 GAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLADRGF 206

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   +  +     + + + ++A++LG EG+GL    Q  AT    + M   + +LN
Sbjct: 207 ETLALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRIPMAAGVDSLN 266

Query: 265 V 265
           V
Sbjct: 267 V 267


>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 94/317 (29%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   +S AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L  D        +  V  + I            + +   P    +  P      +  
Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNL 269

Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208
                                                    Q++  +             
Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329

Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
               L     +  + +      A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
 gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
 gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
 gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 94/317 (29%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   +S AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L  D        +  V  + I            + +   P    +  P      +  
Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNL 269

Query: 194 NL-----------------------------------TDALQKMHSWGFQ---------- 208
                                                    Q++  +             
Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGA 329

Query: 209 -TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
               L     +  + +      A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus]
          Length = 413

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 91/312 (29%), Gaps = 53/312 (16%)

Query: 22  KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     K++ S     +      +   + L G   ++ AL   +       +    +
Sbjct: 88  RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYV 147

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLM 136
             L  D         VK    +    +V  + +       +   +  P         L++
Sbjct: 148 KELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETLLHHTLPLVL 207

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE----------- 185
           + D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA             
Sbjct: 208 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWE 267

Query: 186 ----HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------- 227
               H+P      + D                 D          +               
Sbjct: 268 TVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWL 327

Query: 228 ---------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNA 268
                            A+++G E  G+  ++ + A         + +   + +LN + A
Sbjct: 328 PKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMA 387

Query: 269 AAVALYITQNHF 280
           A++ L+  +   
Sbjct: 388 ASILLFEGKRQL 399


>gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 261

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++                      K     ++ ++          G       
Sbjct: 8   MEIIESKEN-------------------KLIKFLKKLKQKKYRDVEGQFLAEGHK----F 44

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+  ++    ++  ++         N      +  V  +   ++  +E            
Sbjct: 45  LDYNTKP-EIIIVREDVKDLYMEKLNRFECKKI-LVNEKIFQELSSQENSQG----IIIV 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S  L++LD V DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 99  YSKKNNDLNCLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRAT 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +              P  +    +K A+I G EG+G+
Sbjct: 159 MGSILNVNLFYLEKQEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEGRGI 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +    +     + +    ++LNV+ A+A+ LY  +
Sbjct: 219 SDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFR 255


>gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  ++  + + +  
Sbjct: 2   IVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKS-AQALARGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  ++           ++ S+ +++L  ++D  NIGAI+R+A A   DG++   +  
Sbjct: 60  NHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFIGKNL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +S+SGA   +P    ++   AL ++    F+  G     ++         K 
Sbjct: 120 AQE--SIVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            LI+G+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 218

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++++ V+ PHN+ AI+R+  A     +    +     +       S        
Sbjct: 16  RQPHLTVLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPTFSKVSQGSE-KWVFIT 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             IS                    S +          + +A++LGAE  G+  +  +   
Sbjct: 75  TYISIDDAINALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEAAQLVD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAAV L+  Q   
Sbjct: 135 GHITIPMLGMVQSLNVSVAAAVILFEAQRQR 165


>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
 gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
          Length = 218

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +        +++G E  G+  +    A 
Sbjct: 64  THRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
          Length = 254

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A L +N    K + S   K +   +       G   V   L         L AT +    
Sbjct: 2   ASLSKN--KIKFIHSLELK-KIRKEERVFLAEGPKLVGDLL--GHFPCRFLAATPSWFQE 56

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                       +  V  + + +        Q +                 S L + LD 
Sbjct: 57  HPGIDAS----ELVEVSQEDLSR-ASLLKTPQQVLAIFEQPQYTLDPEAVRSSLCLALDD 111

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R A  F  + II ++      +    ++  G +  +     S       
Sbjct: 112 VQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHYTSLP----D 167

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
            + S G   +  +    K + ++  +    +++G EG G+  +         ++      
Sbjct: 168 FIRSLGDTPVFGTFLDGKNMYEQPLSANGLIVMGNEGNGIGKEVATLINRKLYIPNYPAG 227

Query: 259 --IIKALNVSNAAAVALYITQNH 279
               ++LNV+ A AV     +  
Sbjct: 228 QETSESLNVAIATAVICAEFRRQ 250


>gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
 gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
          Length = 153

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYHLDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                       + +G S   K         +   L+ G+E +GL    QE    M ++ 
Sbjct: 64  VQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDWLVFGSESEGLPLTFQEQCDQMLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           MP   I++LN+S + AV L+      
Sbjct: 124 MPHPKIRSLNLSVSVAVGLFEALRQL 149


>gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 291

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%)

Query: 1   MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D            +           +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+  K       +    L  + +    FP+       + ++ G   +  
Sbjct: 54  AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRG 113

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +            +          + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223
                   + + G +  +P+  +             Q++           +         
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 256

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R S + + ++ V+D HN  AILRSA AF    +   +   P   +      +     +
Sbjct: 43  MRRTSYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSKGVTQGAHKWLTL 102

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +              +      L     +P++        A++ G E  G+ P+ +E 
Sbjct: 103 QRMPDIGRAIDALHARGFQVYATDLGEG-AQPIDAVDLARPTAILFGNEKDGVSPEARER 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A    ++ M G +++ NVS AAA+ALY     
Sbjct: 162 ADGRFYIPMAGFVQSFNVSVAAAIALYELTRR 193


>gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 240

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 5/229 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKI--- 104
            + G   V  AL      I  +L  K     LD   +      V+   VP Q + ++   
Sbjct: 5   LVLGKKPVMEALEENPEHIDLVLVKKPVPRGLDPVISRCRQLHVRFKLVPDQELQQMGAA 64

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               A    +       L           +L++LD V DP N+G + R+  A    GII 
Sbjct: 65  RQGIAARLRMQTLVDLDLLLNNTTRAVFPVLLLLDQVQDPGNLGTLARTLAALGGAGIII 124

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +  S        K+++GAL  I   +++NL   L  +   GF     + D  + + ++ 
Sbjct: 125 PRDRSAPLGPGAMKASAGALNRIGVAQVTNLARTLDHIDQAGFNIYAATMDQGQSVLEQT 184

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L+LG E KG+RP   +      H+ M G + +LNV++A A+ L
Sbjct: 185 FVFPAVLVLGGEEKGIRPNVLKRCPGKIHIPMAGGMDSLNVAHAGALIL 233


>gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 281

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 18/254 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY K+     +    ++       G   +  A+N         + +   L  L      
Sbjct: 14  ADYTKLTDVALRKSLEAERGLYMAEGDKVIGRAINAGHTP-RSFIMSARWLETLQPIIEQ 72

Query: 88  PHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVL 138
                     PV     + I+++ G       LA    P L    +       ++ ++VL
Sbjct: 73  ATGHADGGDIPVYVASEELIEELTGFHVHRGALAAMNRPELPSVEEFLGPDSTARRIIVL 132

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           +++ +  N+GA+ RS  A   D ++ T   S        + + G +  +P+ RI +   +
Sbjct: 133 ENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRAVRVSMGTVFQVPWTRIPHWPRS 192

Query: 199 LQKMHSWGFQTIG--------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +Q +   G+ T                +  +    + K+ALILG EG GL   T   A  
Sbjct: 193 MQMLKDRGWITASLALRDDALPLDQFAQLPDVMAPDSKVALILGTEGDGLSAATISHADH 252

Query: 251 MAHLHMPGIIKALN 264
              + M G + +LN
Sbjct: 253 AVVIPMAGGVDSLN 266


>gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 242

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 24/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   +       G   VS  L +      ++L     + ++ +  +  
Sbjct: 6   RTKLIRSLETK-KGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHPQ 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  +P +  +                              QL++ LD V DP N+G
Sbjct: 64  SVLGIFKMPEEADETSKDYSRT---------------FHEHIEGQLVLALDGVQDPGNLG 108

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  D I  +   +   +  + ++  G++  +    +            +   
Sbjct: 109 TIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPIDYPVY 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALN 264
              L   +              +++G EG G+ P  +        +          ++LN
Sbjct: 169 ATLLDGKNLYAQP---LTAHGMIVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESLN 225

Query: 265 VSNAAAVALYITQNH 279
           V+ A ++     +  
Sbjct: 226 VAVATSIVCAEFRRR 240


>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 249

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 1/152 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   + + ++ V+D HN  AILRSA AF    +   +   P + +      +     I
Sbjct: 39  MRRTGYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSKGVTQGAHKWLTI 98

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +              +      L  D  +P++        A++ G E  G+ P+ +E 
Sbjct: 99  HRMPSVGRAIDALHARGFQVYATDL-GDGAEPIDAVDLARPTAILFGNEKDGVSPEARER 157

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A    ++ M G +++ NVS AAA+ALY     
Sbjct: 158 ADGRFYIPMAGFVQSFNVSVAAAIALYELTRR 189


>gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 224

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
             G+ +++  +N+   KI  +  T + + +L    NL         P   + K       
Sbjct: 2   AEGIKSITEFINSDY-KIETIYHTPSFVPKL---LNLSQKINFIECPATDLAKFSSLTTP 57

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            + +AL   P        +      +VLD + DP N+G I+R+A  F    II ++    
Sbjct: 58  QEVIALIKIPTWPVLETKILQQSFSIVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVD 117

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           + +A + ++  G+L  I    ++       ++ +     +  +    + + Q     +  
Sbjct: 118 AYNAKVVQATMGSLARIHVHYVNL-----AQLITNTKLPVFGALLDGENIYQTNFGSQGL 172

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++LG EG G+RP+ Q        + + G  ++LNV+ A AV       
Sbjct: 173 IVLGNEGNGIRPEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISR 220


>gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 278

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 95/259 (36%), Gaps = 16/259 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  QK ++          G  TV   L  P      L+ATK  +     +   P
Sbjct: 30  KIKFIRSLQQK-KNRMAEGLFVAEGPKTVGELL--PVFNATLLIATKEWM----AENASP 82

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               V  V  + + KI   +   Q  G+          +L  + +S L++ LD V DP N
Sbjct: 83  AGVEVIVVEEEMLGKISFLQHPQQVIGIFRIPDDSNDASLFQLPDSDLVLALDGVQDPGN 142

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F    +  +   + + +  + ++  G++  +  +                
Sbjct: 143 LGTIIRIADWFGITTLFCSPDTADAYNPKVVQATMGSIARVRLVYTDLK---DLLDALHP 199

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKA 262
              +  +  + + + Q+  +    +++G EGKGL        T    +          ++
Sbjct: 200 DTPVYGTLLNGEDIYQQSLSRNGLIVMGNEGKGLSKAIASRVTHRLLIPSFPTEKPTAES 259

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ A AV     +  F 
Sbjct: 260 LNVAIATAVVCAEFRRRFI 278


>gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
 gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
          Length = 290

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 94/285 (32%), Gaps = 23/285 (8%)

Query: 14  SLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK----I 68
           SLKD S      R +   ++++S + +S    +   + L G H +   L   S      +
Sbjct: 2   SLKDQSDELITSRRNPLVRRLRSLSARS-GRDEHGVVLLEGTHQLQE-LQCCSWTDSVSL 59

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             +          D    LP    V+ +  + +          Q   +     L+     
Sbjct: 60  DVVATPAWLQTHADLIRALPGSVRVQRISAEALQ---AGLTTVQPDGVACLLPLACLPSV 116

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V     ++ LD + DP N+G +LR+A A     +       P    V+  SA   L    
Sbjct: 117 VEAPDFVLALDRIQDPGNLGTLLRTARAADIQQVWCASGADPLAPKVVRSSAGAILSLPV 176

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIALILGA 235
                +  + + ++     Q                      +P  +        L+LG 
Sbjct: 177 ERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTLPTVLLLGN 236

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG GL P  Q   ++   L     +++LNV+ AA   L   +   
Sbjct: 237 EGAGLDPLLQACCSAGVTLPHSSAVESLNVAAAAVPLLLERRRAR 281


>gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740]
 gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 257

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 4/243 (1%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K   +      H      + +YG       L    + I  +   K     L  + +    
Sbjct: 10  KNSPALELPLSHPELKSFMIIYGKQIFLYVLRRHPKLIKSVYLGKEVEKDLFKEISRL-G 68

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+  V P+   + + +   HQG  +E   +   +L  ++    L+VL  V+D  NIG I
Sbjct: 69  IPLLRVDPKK-AQAMARGGNHQGFLMEIEAISPLSLGEIKRVDRLLVLHGVSDSGNIGGI 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA     +G+I T     S S   A   S          I      L         T+
Sbjct: 128 FRSAYCLGMEGVILTN--LSSFSIESAIRTSSGALLELPFGIVKNPWDLINELRGAGFTL 185

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++   +    +    K AL +G+EG+GL  K       +  + M     +LNV  AAA
Sbjct: 186 YGAALEGEIPNGKSFASKRALFMGSEGEGLPKKLLSKLDQLLKIEMERDFDSLNVGVAAA 245

Query: 271 VAL 273
           + +
Sbjct: 246 ILM 248


>gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 271

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 6/252 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +    +  ++  +K     Q       G   +SA L++       LL     L  +    
Sbjct: 12  DDPRLEAYRNIREKDLVGRQH-QFIAEGKVVLSALLHSKDFSALSLLIVAARLLGIMPIL 70

Query: 86  NLPHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLDHV 141
               P  P+  VP + +D I G             +T P L   L  +    L+ VL  +
Sbjct: 71  KATKPTCPIYCVPQKVMDDIAGFHVHRGMLGIGERKTLPSLQDFLQNLPEKTLVPVLCGI 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++  N+GAI R+A AF+  GII  K           + + GA   IPY + +++   ++ 
Sbjct: 131 SNHDNMGAIFRNAAAFASHGIIVDKTSCDPLYRKAIRVSVGAALKIPYTQGADIDSIIEA 190

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           ++   F    LS  + + L++     + A+ILGAEG GL     + +     + M     
Sbjct: 191 LNDADFHLYALSPSAPRYLKEAKSTKRTAIILGAEGDGLPAHILQKS-ETLRIPMAYGFD 249

Query: 262 ALNVSNAAAVAL 273
           +LNV+ A+ +AL
Sbjct: 250 SLNVATASGIAL 261


>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
          Length = 229

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix
           jacchus]
          Length = 429

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 90/317 (28%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRVEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L  D        +  V  + I            + +   P    +  P      +  
Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++   A   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMSAHFQVPIINNL 269

Query: 194 NLTDALQKMHSWGFQT-------------------------------------------- 209
                   +                                                   
Sbjct: 270 EWETVPNYLPPDTRIYVADNCGRYAQAQVSNKAGDHGWVCDQRALKSHRYEEEEDVETGA 329

Query: 210 --IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
               L     +  + +      A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPEVEVQSYDLDWTEAPAAVVVGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGRRQL 406


>gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 293

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 5/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + +   +           +  A +    K        + L  L       
Sbjct: 39  DYTQLTDVELRKKLEPENGLFISESSKIIQRAHDAG-MKFRSFFLNAHWLEPLAPVIA-H 96

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  P+       ++K+ G       LA    P L    + VR++ ++++++ + D  N+G
Sbjct: 97  HDVPIYVGSEADLEKVAGFRLHRGALASTQRPHLPSVAEVVRDTSVVVIIEDLVDHTNVG 156

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RS  A   D ++ T R +        + + G +  +P+ RI    +++      GF 
Sbjct: 157 AIFRSVAALGADAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPESIDTFQDAGFV 216

Query: 209 ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                                +K+AL+ G+EG GL   T++       + M G + +LNV
Sbjct: 217 VAGMTLGEGAITLDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNV 276


>gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1]
 gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5]
 gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5]
 gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1]
          Length = 228

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 8/227 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G   V   L +   ++  L   K    +   L       +   +  +  +   + + 
Sbjct: 2   IVFGKQVVLHMLTHYPNRVSVLYLAKEVDKKTFSLFRAHQREYQSQIINLDFKK-AQAMA 60

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           K A HQG   E  P    TL  ++    ++VL  ++D  N+GA+ RS  A   +G+I   
Sbjct: 61  KGANHQGFLAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVILDL 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                        +S    +     +      +             +    + ++  +  
Sbjct: 121 HMPY----EGLVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYGAHIRGQDVKNAVFT 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +AL LG+EG GL  +       + H+ M G + +LNVS A A+ +
Sbjct: 177 HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223


>gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
 gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
          Length = 244

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------------PVKTVPP 98
           LYG+  V AAL    R ++ L        +                        V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYVQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    +         +  + + + LD V DP N GAIL
Sbjct: 63  HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210
           RS+  F   G++   + S   S V++K+++GALE I  +   N+         +      
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             +S   + L    KN    L+LG EG G+RP        +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALYIT 276
           V L+  
Sbjct: 239 VLLHEL 244


>gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 276

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 18/280 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 269


>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
 gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 239

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A+R   L + L+ V+  HN+ A++R+A A     I            
Sbjct: 1   MNPTRYARICQMMAMRQPDLTVCLEEVHKSHNVAAVIRTADAVGIPKI-HAIWPEEKMRM 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           +++ +A            +                    SD      +        +I+G
Sbjct: 60  LVSPAAGSNSWVNVNTHPTIADAINTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+ P+    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGISPEAIALADQDIIVPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 262

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPP 98
           H S      + G   V   L+    ++  ++  K A         D         + V  
Sbjct: 5   HQSSESLRLVAGRKPVLELLSTAPERVEGVMLQKGAKGGPVEQILDLCRQRGVRFRFVER 64

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILR 152
             +D+       HQG+  +        L             LL+ LD V DP N+GA++R
Sbjct: 65  HELDR--QFPGNHQGVLADIFEAGYTELHELLQTARQSPLPLLVALDQVLDPGNVGALVR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    G++  K ++        K+++GAL  +P  R++NL  AL++    G+   G 
Sbjct: 123 TVYALGGAGLLVPKHHAARLGTGALKASAGALLRLPIARVTNLARALEECAEAGYTIYGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +  + L          ++LG E KG+RP   +       + +     +LNV+ A A+ 
Sbjct: 183 QGEVGENLFFLEPRLPAVVVLGGEEKGMRPGVAKRCDFTLRIPLQHGFDSLNVAQAGALI 242

Query: 273 LYITQN 278
                 
Sbjct: 243 TGHFAR 248


>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
 gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
          Length = 218

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + ++ V+ PHN+ AI+R+A A     +            + + +A        
Sbjct: 4   MRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                    SD+     +        +++G E  G+  +    A
Sbjct: 63  KTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 123 DRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 161

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 80/154 (51%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 3   EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 63  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGE 122

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  L M G + +LN S AA++ +Y      
Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 156


>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
 gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
 gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
          Length = 229

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 291

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%)

Query: 1   MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D            +           +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+  K       +    L  + +    FP+       + ++ G   +  
Sbjct: 54  AIRAGYEPIAMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLRG 113

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +            +          + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223
                   + + G +  +P+  +             Q++           +         
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPAL 233

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1]
          Length = 214

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 4/213 (1%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
             K+               P+ T   + I  I G   V   L       L    +  R  
Sbjct: 2   CRKDIEGEAKGIVARCGDIPLYTGEEEEITAITGFRLVRGALCAMRRRELPSAEELCRGK 61

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIP 188
           + + VL++V +P N+GAI RSA A   + +I T   +             +       I 
Sbjct: 62  KRIAVLENVVNPTNMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRVSMGTVFQVPWTIM 121

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R     D L  +           +      ++    +K+A+I+G EG+GL   T +  
Sbjct: 122 KCRNEEYPDILHGLGYKMAAMALKDNSVDIDDDRLNSEEKLAVIMGTEGEGLADHTIDAC 181

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M   + +LNV+ A+AVA +       
Sbjct: 182 DYTVKIPMYNGVDSLNVAAASAVAFWQLGKKRK 214


>gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829]
 gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 8/217 (3%)

Query: 68  IFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +  +L     L+ L+           P+     + + K+VG        A    P L  +
Sbjct: 54  VISVLVWDKHLSNLERSISPEAFGDVPIYVASHELLSKLVGFNVCRGYYACVRRPSLLSS 113

Query: 126 LD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +   + V++ + D  N+GA++R+A A   D ++ +   +   +    +++ G +
Sbjct: 114 ASVDWHSYTRIAVVEDLCDVSNLGALIRNACALGIDAVVCSPTCADPFNRRCVRTSMGTV 173

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKG 239
             +P I+ ++                                      + AL  G E KG
Sbjct: 174 FRLPIIQANSNWPYDVFSCLSSADYTVFGAALRKDALNVHDVDFSHYKRCALCFGNESKG 233

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L     +    +  + M   + +LNV+ ++AV  +  
Sbjct: 234 LSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFWDM 270


>gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois]
 gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806]
 gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis]
 gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois]
          Length = 253

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 11/248 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + L L G  +V   L +   +                 A      P        +  + 
Sbjct: 5   KKQLILNGKKSVLEILKDVELRKLIHHVYLTESQTSLISACKTLEIPYSLQNSAWLKSLQ 64

Query: 106 GKEAVHQGLALETAPLLSP----------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            +                             D    S L+++++ + DP+N GAI+R+ V
Sbjct: 65  REFDAKYSNVFAVLNSRQQLSFEDFKQVLWKDQKNTSYLIVMVEKIQDPYNFGAIIRTCV 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSS 214
           A   + II +   +   + V+ K++ G    +  I++ +L+ AL ++  + F        
Sbjct: 125 AAGVNYIIYSSSNNTKLNNVVLKTSQGYALKMQLIQVKDLSKALAELKKFNFLSYAASLK 184

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              K        ++  ++LG EG+G+ P+ + +      + M   +++LNVS A  + +Y
Sbjct: 185 SPSKNYFSVKYENRTIIVLGNEGEGISPRLENSVDYRIKIPMNNGVESLNVSVANGILIY 244

Query: 275 ITQNHFAK 282
                + +
Sbjct: 245 EVLRQWKE 252


>gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 350

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/201 (10%), Positives = 54/201 (26%), Gaps = 6/201 (2%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           +         +      V     + ++ +         +  E        ++    S  L
Sbjct: 105 DCRGSWFPYEDRFRCAEVHLSSREVLEAVTPH------MMEERTDRFRRVVENRSFSVCL 158

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V    +  +   A   +         + +   S   +     S             +  
Sbjct: 159 VVEGLSDFGNISAAFRSADALGIQSVHVVSCGSSKRYNGNRHVSMGAEKWLDIEFWDTPK 218

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                                   +     +   A+++G EG+G+  +  E +     + 
Sbjct: 219 ECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGICDEALELSDLRCSIP 278

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           M G++ + NVS AA + ++  
Sbjct: 279 MNGMVDSFNVSVAAGILMHHA 299


>gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
          Length = 250

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   +     + G      AL   P ++I  +L T+        +
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSLYYVIEGFRCAQEALKRLPQQQIIAILVTEKTD---SPN 60

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
             L        +  +  + +   +     L          + +   +   ++VLD + DP
Sbjct: 61  YALDKK---YIITEKDFEALSQTQNPQGIL---ILAEKPNSQELNFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     II         +    ++  GA   + +  +  L D       
Sbjct: 115 GNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSLKFSYLETLADLKNISKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+   +         +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDFSIG---EKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       K
Sbjct: 232 NVAQAATIYLFEGLRQRLK 250


>gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 91/257 (35%), Gaps = 18/257 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++ ++       G   V+  +     +   +LA  + +        + 
Sbjct: 6   KVKYIHSLEMK-KYRNELNAFVAEGNKLVADMMFA--FECELILAKPSWM-------AMQ 55

Query: 89  HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P K +     + I         Q +            +A  +S L++ LD + DP N
Sbjct: 56  GNIPAKELLEAEDEDIRKASFLKNPQDVLAVFKRPDWSIDEADPSSSLVLALDGIQDPGN 115

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I+ +   +   S    ++  GAL H+             K     
Sbjct: 116 LGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVKVHYTELE--DYLKAQVAR 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262
              +  +    + +  +  +    +++G EG G+RP+ +E      ++          ++
Sbjct: 174 QIPLFGTFLDGENMYTKELSANGIIVMGNEGNGIRPQIEELIDQKLYIPSFPPERETSES 233

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A AV     +  
Sbjct: 234 LNVAIATAVICAEFRRR 250


>gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
 gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
          Length = 281

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 10/260 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDW 83
            +       +   ++     +       G   V   L  +  R +  +L ++ +L R+  
Sbjct: 23  PDDPRIADYRDVRERDLVGRR-GLFMAEGE-VVLRLLTAHGGRDLHSVLVSQASLPRIAD 80

Query: 84  DANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVL 138
             +L P   PV       +D IVG   +H+G+               L ++    L++ L
Sbjct: 81  ALDLLPRNVPVHVAGQAVMDAIVGFH-IHRGILAVGRARPQVPAPELLASLPERALVVAL 139

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + +  N+G I R+A AF  D ++              + + GA   +P  R     + 
Sbjct: 140 QGIANHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSVGASLIVPTARAGTTAEM 199

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ + + GF  + LS   ++ L   +   + A + G EG GL P+    +T    + M  
Sbjct: 200 MEAIAAAGFDLVALSPSGRERLSDIVPGGRQAALFGTEGPGLPPEVLA-STRTISIPMAA 258

Query: 259 IIKALNVSNAAAVALYITQN 278
              +LNV+  + + L+    
Sbjct: 259 SFDSLNVATTSGIVLHHLSR 278


>gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83]
          Length = 227

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DGII    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 310

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81
           ++    ++       +    ++     + G   V  A+ +   ++  +  T+ AL R   
Sbjct: 42  SNPTSARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHSE 101

Query: 82  DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            WD  +     V     Q +D +    + +   +A E A        A+  ++L+ VL  
Sbjct: 102 IWDEAVAAGLYVHVTTQQVMDAMSPDAQGLLAVVATEEATGSEALAAALEGARLVAVLTQ 161

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
             DP N G I+R+A A   D I+  +      +  + +S +G+L H+P +    L DA+ 
Sbjct: 162 AQDPGNAGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +H+ G   +         L +         A +LG E  GL  +    A ++  + + G
Sbjct: 222 ALHNAGLTVLAADGRGDFDLLEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LNV+ AAAV LY +  
Sbjct: 282 KAESLNVAAAAAVCLYASAR 301


>gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 269

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 87/238 (36%), Gaps = 6/238 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHP 90
           +     + R   +           +  AL         +L T   +  L           
Sbjct: 19  LTDVALRRRLEPERGLYMAESEKVIRRALAAGHVP-RSMLLTPRWVEDLAELVAEVEATG 77

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV    P  ++ + G       LA    P L    D +  ++ ++V++ V D  N+GAI
Sbjct: 78  APVYVAEPAVVESMTGFHLHRGALAAMQRPELPAVADLLGGARRVVVVEDVVDHTNVGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RS  A   D ++ T R +        + + G +  +P+ RI      + ++   GF   
Sbjct: 138 FRSVAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQGAGFTVA 197

Query: 211 G---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                              +++AL+LG EG GL P+T E A     + M G + +LNV
Sbjct: 198 ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVRIPMSGGVDSLNV 255


>gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 275

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 17/279 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN         +  + D +  +L   +RD ++     ++ R           G   V   
Sbjct: 1   MNQ-DTHSHGCVQQIDDPNDIRLSP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 50

Query: 61  L--NNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQG---L 114
           L  ++   +   LL  +N LA L      LP   PV +VP   +D + G           
Sbjct: 51  LFSSSARFETESLLVLENRLAGLGEQLSQLPSEVPVYSVPQTVMDAVAGFHVHRGILAVG 110

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             +T P L   LD +    L++VL  +++  N+G+I R+A AF  D ++           
Sbjct: 111 RRKTPPSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYR 170

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              + + GA   +PY    ++ + +  +    F  + LS  S   +    K+ + AL+LG
Sbjct: 171 KAIRVSVGATLKVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHGRQALLLG 230

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            EG+GL P+  E     A + M     +LNV+ A+ +AL
Sbjct: 231 TEGEGLPPRLLEKL-QTARIPMSTAFDSLNVATASGIAL 268


>gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
 gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
          Length = 229

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGNRMRTMASTAAGSNSWVSVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      Q             SDS     +        +++G E  G+  +    A 
Sbjct: 75  THRTIGDAVAQLKGRGMQILATHLSDSAVDFREIDYTRPTCILMGQEKTGITEEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
 gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
          Length = 276

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 14/250 (5%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNALARLDWDAN-LPHPF 91
           +      +       G   V   L    R         +L  +N LA L       P   
Sbjct: 24  KERDLTGRQGRFIAEGT-VVLRLLAAAHRAGRGITAEAILLLENRLAGLAELLAEFPADV 82

Query: 92  PVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           PV     +  D I G      V      +  P     + A+  S L++    +++  N+G
Sbjct: 83  PVFVADARVFDAIAGFNMHRGVLALGRSDAVPDRDALIAALPASSLVLAACGLSNHDNMG 142

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A AF  D ++              + + G++  +P+ R     + ++++H+ GF 
Sbjct: 143 SLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVLTLPFARQGTAAELIERLHAAGFA 202

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GLS   +  + +     ++AL++G EG+GL           A +     + +LNV+ A
Sbjct: 203 IWGLSPRGETEVTEIPPAQRVALLVGTEGEGLPQAVLSAV-RTARIRQRPGLDSLNVAMA 261

Query: 269 AAVALYITQN 278
           A +AL+    
Sbjct: 262 AGIALHEVAR 271


>gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +      Q             SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|281424397|ref|ZP_06255310.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
 gi|281401666|gb|EFB32497.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
          Length = 250

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 91/255 (35%), Gaps = 16/255 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S   K ++  Q       G   V   L     +   L+AT+  L         P  
Sbjct: 8   KFIKSLQLK-KNREQTRLFIAEGHKLVEELLAMS--RAHTLVATQEWLDSHS----APPA 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  V    + K+   +   Q L L   P  +    A+  S L ++LD + DP N+G I
Sbjct: 61  DEVIEVTSDELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  F  + I  ++  +   +  + ++  G++  +     +      Q         I
Sbjct: 119 IRIADWFGINDIYCSQETADMYNPKVIQATMGSITRVRLHYGALEPMLRQ---LPADFPI 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVS 266
             +      +  E  +    +I+G EG G+  + ++       +          ++LNV+
Sbjct: 176 YGTLLEGNDIYNEQLSAHGLIIMGNEGNGISAQIRQMVNCPLLIPNYPPNTPTAESLNVA 235

Query: 267 NAAAVALYITQNHFA 281
            A A+     +    
Sbjct: 236 IATAITCAEFRRRIK 250


>gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 291

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 24/295 (8%)

Query: 1   MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D            +           +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+  K       +    L  + +    FP+       + ++ G   +  
Sbjct: 54  AIRAGYEPIAMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLRG 113

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +            +          + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223
                   + + G +  +P+  +             Q++           +         
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDRKLWREKGVASLQELGFKTAAMALRDNTVDIDDPAL 233

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 218

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            +++ +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGARMRTMVSAAAGSNSWVSVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD      +        +++G E  G+  +  + A 
Sbjct: 64  SHQTIGDAVSHLKGRGMQVLATNLSDKAVDFREIDYTRPTCILMGQEKTGISQEALDLAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 212

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 10/219 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L         FP      + I   +      QG+   
Sbjct: 3   EEAVQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P  R+++     +             S       +    +   L++G EG
Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211


>gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 299

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 97/268 (36%), Gaps = 20/268 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    ++R   +           ++ AL+         L  +  L  L       
Sbjct: 18  DYTRLKDVKLRARLEPERGLYMAESTSVITRALDAGHSP-RSFLMAQRHLPGLAGAIESA 76

Query: 89  HP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLM 136
                    P+ T P + ++++ G       LA    P L    +          ++ ++
Sbjct: 77  TGSADGGPVPIFTAPEEVLEQLTGFHLHRGALAAMHRPALPRADELLATARGGAPARRVV 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GA+ RSA A   D ++ T   +        + + G +  +P+ R+    
Sbjct: 137 VLEDLVDHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWP 196

Query: 197 DALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           D      +                 D            K+A+++G EG GL  +T   + 
Sbjct: 197 DMGALHGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
               + M   + +LNV+ A+AV  + T+
Sbjct: 257 YTVRIPMEHGVDSLNVAAASAVVFWATR 284


>gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57]
          Length = 227

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria
           monocytogenes FSL F2-208]
          Length = 59

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +A+++G+EG G+    +E    + HL M G + +LN S AA++ LY      
Sbjct: 1   MPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 54


>gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 293

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 19/243 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA------NLPHPFPVKTVPPQTIDK 103
           F+YG++    AL++  R I +++  ++  + L                PVK V  + +D+
Sbjct: 37  FVYGLNPTMIALHSNKRNIVEVIINQHVQSHLPPKISNIINTANAKKIPVKFVDREKLDR 96

Query: 104 IVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +V  +     +        L      +    +++ LD + DP N GAI+R+      D +
Sbjct: 97  LVQNQPHQNVVIKAEPLKYLRTKSSDILQGNMILFLDRITDPQNFGAIIRTCQYLGVDNV 156

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +      +  ++K++SGALE +      +  + L+     G++      +  +    
Sbjct: 157 VVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVEFLKDCQLRGWKVYSTGLNHSENQIS 216

Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHL--------HMPGI---IKALNVSNAAA 270
            E   DKI L++G EG G+ PK  + +  +  +         M      I +LNV++A +
Sbjct: 217 LEKLKDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTLYLNRPMVFPYTLIDSLNVNSATS 276

Query: 271 VAL 273
           + +
Sbjct: 277 ILI 279


>gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 271

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 5/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDK 103
           +       G   +   L          L  +N LA LD   +      PV       +D 
Sbjct: 28  RQGRFVAEGKVVLDLLLTTGRFAAESALVLENRLAGLDKILSKAPADLPVYVATSAVMDA 87

Query: 104 IVGKEAVHQGLALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I G       LA+            LD +    L++VL  + +  N+G+I R+A AF  D
Sbjct: 88  IAGFHMHRGILAMGRKGAPQPAEALLDGLPPRALVVVLVGIANHDNVGSIFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++              + + GA   IP+   ++       +   GF+   LS   K  +
Sbjct: 148 AVLLDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTTTLARRGFEQFALSPRGKTDI 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +++++AL LG EG+GL      +      + M     +LNV+ A+A+AL+  
Sbjct: 208 RDAQRSERLALYLGTEGEGLPDDLLASL-HNVRITMAEGFDSLNVAAASAIALHHF 262


>gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 227

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGVHKVHAV--WPNEMRTLSHTSAGARNWVDVE 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S      +         +   S++     +       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIEDAINELKSQGMQVLVTNLSETAVDFREIDYTKPTAIILGSEKTGASEQAKQLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
 gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
          Length = 231

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S     +++ SA         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSVRMRTMVSASAGSNSWVKVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    S       +        +++G E  G+  +    A 
Sbjct: 75  THRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITAEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 228

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 53/170 (31%), Gaps = 7/170 (4%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-------TTKRYSPSE 172
                 + A R   L ++++ V+  HN  A+LRS  A                       
Sbjct: 6   WQKIQQVLARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTEDQNPS 65

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
               A S S A            +                 S       +        ++
Sbjct: 66  RHTAATSGSAAKWVGLRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREVDYTRPTCIL 125

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LG E  G+  +    A     + M G++++LNVS AAAV L+  Q    +
Sbjct: 126 LGTEKWGVTEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQ 175


>gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449]
 gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 229

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   L+  +  I ++   K  L +  +        P+K V  +   + +    
Sbjct: 2   IVYGKQPILYILHTNASCIEEIYLAKE-LPKDIFKQLAQLDKPIKRVDMKK-AQALAHGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+     P    +L+ +++   L+VL +V D  NIG+I R+A A    G++      
Sbjct: 60  NHQGILASIIPPSPLSLNDLKSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVICLSNL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             ++       S          +      +          +  +    +         K 
Sbjct: 120 SQKAIESIARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIGADMQGQESCNV--KKKW 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  + +    ++  + M     +LNV+ A  + +
Sbjct: 178 ALFLGSESEGLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221


>gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 161

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 80/154 (51%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 3   EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 63  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 122

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  L M G + +LN S AA++ +Y      
Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 156


>gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
 gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
          Length = 175

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 80/154 (51%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 17  EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 76

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 77  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  L M G + +LN S AA++ +Y      
Sbjct: 137 KCDFLITLPMVGKVTSLNASVAASLLMYEVYRKR 170


>gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 231

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     I      +P     L+ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQI-HAIWPTPEMYTRLSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                                         SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALAMADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
 gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
          Length = 227

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +   L    P          + + K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 TLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
          Length = 208

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 9/202 (4%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLD 139
             H   +       +D++ G  + HQG+AL        T+              L++ LD
Sbjct: 4   ADHGIALMQATRGELDRMTG-GSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALD 62

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+GAI+RSA AF   G++   R S S +A   K+++GA   IP    +NL  AL
Sbjct: 63  KVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQAL 122

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K  + G+  +GL+ ++          +  + +++G+EG GL   T+++   +A + +  
Sbjct: 123 GKFAAAGWMIVGLAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISS 182

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            +++LN S AA++ALY      
Sbjct: 183 DVESLNASVAASIALYEAARMR 204


>gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03]
          Length = 241

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 2/237 (0%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDK 103
           + EN    G H++ + + +   KI ++    N    R++    +     +       + +
Sbjct: 3   KKENDLRIGFHSIKSIVEHNPHKIKKISLPANRNDLRINQLITVLDQNSINYEFSNKVKQ 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                  +                 +    L+++LD+V DP N+GA +R A     D +I
Sbjct: 63  EPEAIVSNDPELNFKDLKKYLN-SNLVIQPLILILDNVIDPRNLGACIRCAAVAGVDAMI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +AV  K + G  E I    ++NL + L+ ++       GLS  + +   + 
Sbjct: 122 INKHQCAPLNAVAHKVSVGGAEVIKLFHVTNLINCLKFLNEKNINIYGLSEHADESYHEC 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 ALI+GAE  G+R KT E      +L    + K+ NVS A  + L       
Sbjct: 182 NFKFATALIMGAEESGIREKTLERCDHKINLSGNKLFKSFNVSVATGIILSEANRQR 238


>gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
 gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
          Length = 219

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+D+VN  HN+ A++RS  A     I    R     +   A  A  +      
Sbjct: 17  RQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFTRHNAA-AGSSKWVNIN 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +     +   +            S++      +       ALILGAE  G+       A 
Sbjct: 76  LYHDIESVYRRLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGAEWDGISEDAISGAD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A AV +Y  Q   
Sbjct: 136 RCIGVPMFGMVESLNVSVAGAVIIYEAQRQR 166


>gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 196

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 55/152 (36%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RSA AF    +      +         SAS       
Sbjct: 19  WRQKDLTLVLANIHDPHNVSAIYRSADAFGVAALHLYYTDTAFPELGKKSSASARKWVES 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                    +   KPL         A+I+G E  G+  +     
Sbjct: 79  VRHRSAEELYAALKAGGHQILATSCTPESKPLGAYDFTKPTAVIMGNEHSGVPAELNSLV 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAAV L       
Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAVILSEASRQR 170


>gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125]
 gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 257

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   QK ++  Q     + G   V   LN+P + +  + AT+  +          + 
Sbjct: 22  KLIRQLGQK-KYRKQFNQYLVQGEKNVLELLNSPLKAVD-IFATEAFINTYQAQYLGIN- 78

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                   + +         +           +  L       L++ LD V+DP N+G I
Sbjct: 79  ---FICAEEELLTKASTLVSNNAAIAIVNMPQAAQLQTSG---LILALDGVSDPGNLGTI 132

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+T+   + + +     +  G+   +   ++                 +
Sbjct: 133 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPAHLATLKLPIYGAFL 192

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +                L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 193 DGENVHN-----TQFTGSGVLLMGSESHGIREACAKLVTDKITIPAFGQAESLNVAMATG 247

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 248 IILDNFKRQ 256


>gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 230

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ A++R+A A     +        S   +++ +A   
Sbjct: 10  CQMMAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                           +             S +     +        +++G E +G+  +
Sbjct: 69  SWVSVKTHRDIAAAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALQLADRDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 230

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A       
Sbjct: 14  NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITDEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 297

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 94/251 (37%), Gaps = 10/251 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
              ++     +     + GV  V AAL     ++ ++    +A  R +            
Sbjct: 37  RRLKRPAARREQGRFLVEGVQAVGAALAVG--ELLEVFVGVSATPRHEELLRAVRVPVRV 94

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                        E V     +  A L +  L  +   +L+ V     DP N G ++RSA
Sbjct: 95  VTDEAV---ASLSETVTPQGLVAVAALPAHRLADLHAPRLVAVCIGAGDPGNAGTVIRSA 151

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D ++ T            +S++G+  H+P I    L   L ++ + G + +  S 
Sbjct: 152 DAAGADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVEPALAGVLDRLRARGCRIVATSG 211

Query: 215 DSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            + + ++        +   A + G E  GL   T   A ++  + + G  ++LN++ A+A
Sbjct: 212 AADRDIDTAVAAGELDGPTAWLFGNEAHGLASATLAAADAVLRVPVYGQAESLNLAVASA 271

Query: 271 VALYITQN-HF 280
           + LY +     
Sbjct: 272 LCLYASARAQR 282


>gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae
           FH]
          Length = 239

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 11/237 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E  FL+G      AL+N  +     L+ K    +             +    Q   +  
Sbjct: 2   QETSFLFGSKAFLEALDNQLQIKKVNLSDK---HQKLLGLIKKRGLRYEMHSSQWFHQQF 58

Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 + + +     +  T++        +++  L++LD + D HN GAILR+ +A   
Sbjct: 59  RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLDEIQDLHNFGAILRTCMAAEV 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSK 217
           DGII  K      ++ + +++ G + +   ++++N        + H +      L    K
Sbjct: 119 DGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLK 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +++  DK  L++G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 179 PKDYRQVDFDKRILLVGNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 235


>gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 241

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 21/253 (8%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A          K +      +   + +   + G H V  A+                   
Sbjct: 2   AITSTQDPKILKYKKLLT-PKGRQEQQLFIVEGYHLVKEAIEAN---------------- 44

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           +  D    +         Q    I+   +  Q      A      L+   N   ++ L+ 
Sbjct: 45  IVIDILEFNDILTYKNSTQVTRAIIKTLSTTQTPQNIIAICKIQNLNIKANK--IIALNK 102

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP NIG I R A +F  D +I       +E  + +   +    +I      +   +  
Sbjct: 103 LQDPGNIGTIFRLAKSFGFDSVIVENIDIYNEKIIRSSQGAMFSLNIIKTNDLSKELSAF 162

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K   +   +  L+ +S K  + + +N KI ++LG EG G+  K  + +    ++ +    
Sbjct: 163 KKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDEKIIDLSDFNVYVPI--EF 220

Query: 261 KALNVSNAAAVAL 273
           ++LNV+   A+ +
Sbjct: 221 ESLNVACCGAIIM 233


>gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 153

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G +                 L+ G+E  GL P       +  ++ 
Sbjct: 64  EAFKTVHQERGGRWLGYTVGGNFSYVSFRYQADDWLLFGSETTGLPPTILSDCDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + A+ L+ T+   
Sbjct: 124 MSQPGVRSLNLSVSVAIGLFETRRQL 149


>gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 304

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81
           ++    ++       +    ++     + G   V  A+ +   ++  +  T+ A+ R   
Sbjct: 42  SNPASARISRVAGLSRRNARTKHRRFLVEGPQGVREAIRHTPERVLDVYLTEAAVERHGE 101

Query: 82  DWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            W   +     V     Q +D +    + V   +A            A+  ++L+ VL  
Sbjct: 102 IWHEAVAAERYVHVASEQVMDAMSTDAQGVLAVVAAAEVTGSEALATALDGARLVAVLTQ 161

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
             DP N G I+R+A A   D ++  +      +  + +S +G+L H+P I    L DA+ 
Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVALDDAVA 221

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +H  G   +         L +         A +LG E  GL  +    A ++  + + G
Sbjct: 222 ALHEAGLTVLAADGRGDFDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LNV+ AAAV LY +  
Sbjct: 282 KAESLNVAAAAAVCLYASAR 301


>gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 241

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ P+N+ AI+R+A A     +        +   +   SA         
Sbjct: 16  RQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV-HAVWPKENMKVLSHTSAGARNWVELD 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S +                  SD+             A+ILG E  G+  +    A 
Sbjct: 75  THDSMVEAVQTLKDQGMQVLATNLSDTAIDFRDVDYTKPTAVILGGEKNGITAEALAMAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 251

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           + G   V        R++ +++           +A      PV+ +PP+  ++ V +  V
Sbjct: 19  VEGRRAVLECFRAGRRRVRRVIVEAGREPEAIIEAAARAGVPVELLPPERFER-VARTEV 77

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+  +  P++   LD + +  LL+V+DH+ DPHN+GA+LRSA AF  DG++  +  S 
Sbjct: 78  HQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSV 137

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKI 229
             +  + K A+G +E + +  +S++  AL+++ + G  ++GL +D+   +       +++
Sbjct: 138 PLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSVGLDADAATSVFSLTLATERL 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL++GAEG+GL P  +      A + +   + +LN S AA++AL
Sbjct: 198 ALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAASIAL 241


>gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 10/250 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++   K+++   Q S    +   L+L G H   AAL    R    + A           
Sbjct: 12  RDNAFVKELRRLAQDSTAYRRQGRLWLEGEHLCRAALARQLRPSIAVFAESFWPQAQAEY 71

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A          V  + +   +        +          +L     +   +VLD V D 
Sbjct: 72  AQDASKI---MVLAEPLFAGISALESPARMGFILDLPAPASLQPGAAT---VVLDRVQDA 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+ILRSA AF    ++  K  +   S  + ++  GA                 ++ +
Sbjct: 126 GNMGSILRSAAAFGFRQVLALKGSAALWSPKVLRAGMGAHF----ALNLIEAAGPAELQA 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  S  + + L +       A I+G EG+G+ P     A     +  PG  ++LN
Sbjct: 182 LQLPMLVTSPHAGEYLHRATLPWPCAWIMGHEGQGVTPALTAKAALRIRIAQPGGQESLN 241

Query: 265 VSNAAAVALY 274
           V+ AAA+ L+
Sbjct: 242 VAAAAAICLH 251


>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 230

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHNI A++R+A A     +      +     +++ +A       
Sbjct: 14  NCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +         +          S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 220

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++LD V+ PHN+ AILR+  A          R+    +   A S+         
Sbjct: 16  RQPDLQVLLDQVHKPHNLSAILRTCDAVGVPRAHAVSRHQD-FTVHRAASSGTGQWVAVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                   S+      Q        L+LGAE +G+  +    A 
Sbjct: 75  THADLPAAVRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGAEKEGVSEEGAALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G+  +LNVS AAAV L+  Q   
Sbjct: 135 GHVIIPMFGLGASLNVSVAAAVILFEAQRQR 165


>gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 153

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G + R+  A   +  +            L ++      ++ +   
Sbjct: 1   MLRVVLVCPQIPPNTGNVARTCAATDTELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             L    Q     G + IG S+  +    Q        L  G+E +GL P       +  
Sbjct: 61  ETLEAFNQVSQKLGGRWIGFSTSGQYSYVQFQFQPNDWLFFGSETQGLSPSVLTRCGATV 120

Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHF 280
            + M    +++LN+S +AA+ L+  +   
Sbjct: 121 VIPMTQPGVRSLNLSVSAALGLFEARRQL 149


>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
          Length = 218

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +        +++G E  G+  +    A 
Sbjct: 64  THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 268

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 6/241 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +  +     +++  ++           +  AL    +    L   K+             
Sbjct: 16  FGTLTEAQLRNKLDAERGLFIAESPKVIRVALQAGYQPQALLCERKHITGDAADIIAACG 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDP 144
             P+ T   + + ++ G       L                         ++V+D V D 
Sbjct: 76  DIPIYTGERELLAQLTGYTLTRGVLCAMRRKPELSVQQVLGSIPSGQKHRIVVIDGVVDT 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI RSA A   D ++ T+      +    + + G++  +P+  + +        + 
Sbjct: 136 TNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDSYDTLRSLGYQ 195

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +              + +++A I+G EG GL  +T   A     + M   + +LN
Sbjct: 196 TAAMAL-TDKSISLDDPVLKQQERLAFIMGTEGDGLPQQTITNADFTVRIPMSHQVDSLN 254

Query: 265 V 265
           V
Sbjct: 255 V 255


>gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 363

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 88/244 (36%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 119 RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 178

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ + +PHN+G ++RS  
Sbjct: 179 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 237

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SS 
Sbjct: 238 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTVVMTSSA 296

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL      +K+ L+LG E + L             +   G ++ LNVS A  V L  
Sbjct: 297 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCIAIDGTGKVETLNVSVATGVLLAE 356

Query: 276 TQNH 279
               
Sbjct: 357 WWRQ 360


>gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 235

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ V+ PHN+ A++R+A A     +                +         
Sbjct: 15  MRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVHAVF-LGEDNRLRGGTATGSQQWVKV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S      +             S+              A+++G E  G+  +    A
Sbjct: 74  NRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DHDVIVPMVGMVQSLNVSVASALLLYEAQRQR 165


>gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++V+  HN+ A++RSA A     +      +         +         +
Sbjct: 5   RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEM-HAIWLTKKARLSGGTALGSQNWVKIH 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                +   S+      +       A++LG E  G+  +  + A 
Sbjct: 64  NHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEALDIAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G++++LNVS A AV LY  Q    +
Sbjct: 124 YHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 156


>gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 284

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 40/276 (14%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ ++  N             + G   V     +  R    L+         +    L  
Sbjct: 20  FRALKKQNVNRDGRR----FVVEGWKLVERLARSAHRLETVLVV--------EDQVELAR 67

Query: 90  PFPVKTV-----PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----------VRNSQL 134
             PV+ +       + +  +VG    HQG+        +PTL+                +
Sbjct: 68  RLPVEELTIFTLSRERLRDLVGF-NFHQGVLGCGIRADAPTLNQLLAASQRVTARSGRSV 126

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V   + +P N+GA++R        G++         S  + + + GA    P +  SN
Sbjct: 127 VLVCPALFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVVEASN 186

Query: 195 ------------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                              +      +      +  P ++    D++AL+LG+E  GL P
Sbjct: 187 VAAALDYLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAHGLEP 246

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + A  +  + M     +LN++ A  + LY    
Sbjct: 247 CWVQRADQLTTIVMRPGADSLNLAVATGILLYHLTR 282


>gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 219

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +        S   +++ +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKSMRTLVSTAAGSNSWVSVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +   +             S +     +        +++G E +G+  +  + A 
Sbjct: 64  THRDIASAVSELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVEVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALSLADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata]
          Length = 384

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 117/327 (35%), Gaps = 60/327 (18%)

Query: 7   KKSEKIFSL--KDSHYAKLR---RNHRDYKKMQSFNQKS------RHTSQPENLFLYGVH 55
           KK +K  SL  +++H  +L     ++RD K       K+      +    P + +LYGV+
Sbjct: 54  KKRQKAGSLGKREAHEQRLDGICHSYRDNKNAHRQKFKNLYTNVTKFAINPLSEYLYGVN 113

Query: 56  TVSAALNNPSRKIFQLLATKNALARL-----DWDANLPHPFPVKTVPPQTIDKIV----- 105
            + AAL +  R  F  L   +   +                 + T     ++ I      
Sbjct: 114 PILAALESDRRGYFTRLLHHDTNDKDSNKLTILRLCKEKGIKIDTADKHQLNLITKSAVH 173

Query: 106 --------------------------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                                         +      + +       +  +   + + LD
Sbjct: 174 NNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSEKFHNNERKKYPVGIYLD 233

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DPHN+GAI+RSA     D +  +++   +   V+AK++SGA++++P   +       
Sbjct: 234 EVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSGAVDYLPMFYVDKPLKFF 293

Query: 200 QKMHSWGFQTIGLSSDSKKPL----------EQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +   + G+  +  S    K                 +  I L++G E  G+R   ++ + 
Sbjct: 294 ELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGNEYSGIRTNLKQRSD 353

Query: 250 SMAHLHM---PGIIKALNVSNAAAVAL 273
            +  +        + +LNVS A  + L
Sbjct: 354 FLVAIPQMTNNSTVDSLNVSVATGILL 380


>gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129]
 gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
           homolog
 gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae
           M129]
          Length = 242

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 11/237 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E  FL+G      AL+N  +     L+ K    +             +    Q   +  
Sbjct: 5   QETSFLFGSKAFLEALDNQLQIKKVNLSDK---HQKLLGLIKKRGLRYEMHSSQWFHQQF 61

Query: 106 GKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 + + +     +  T++        +++  L++L  + DPHN GAILR+ +A   
Sbjct: 62  RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLHEIQDPHNFGAILRTCMAAEV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSK 217
           DGII  K      ++ + +++ G + +   ++++N        + H +      L    K
Sbjct: 122 DGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLK 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +++  DK  L++G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 182 PKDYRQVDFDKRILLVGNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 238


>gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 345

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGHNIVNVLHDFRQAGYSVVNTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              PL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15]
          Length = 245

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 49/152 (32%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V+ P N+ AI+RS  AF     +          A    +         +
Sbjct: 16  RQPDLSVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPKEGFRAFRKTAGGSYNWVTTH 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    SD               +ILG E  G+       A 
Sbjct: 75  THRSMDEAIQSLKVQGHKLYAAQLSDRAIDFRDVDYTLPCTIILGNEVDGVSVDAAAQAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS+A A+ L   Q    
Sbjct: 135 EHIVIPMMGMVESLNVSSACAIVLSEAQRQRK 166


>gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185]
 gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185]
          Length = 345

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFDVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLSE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 227

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
              +  AL+     +  L   K+         +     PV T   + +  + G       
Sbjct: 1   PKVIRVALDAGYEPLALLCEQKHITGDAADIISRCGDVPVYTGGRELLATLTGYVLTRGV 60

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L     P      D  R+++ ++V+D V D  NIGAI RSA A   D ++ T+      +
Sbjct: 61  LCAMRRPAPRTVEDTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLN 120

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + G++  +P+  +      L +                          ++A+++
Sbjct: 121 RRAVRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAMALTDDSISIADPVLASEPRLAIVM 180

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G EG+GL P T   A  +  + M   + +LNV
Sbjct: 181 GTEGEGLPPDTIAAADYVVRIPMAHGVDSLNV 212


>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
 gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 229

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITEEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
          Length = 230

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A       
Sbjct: 14  NNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPTNRMRTLVSTAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S S     +        ++LG E  G+       
Sbjct: 73  VETHRTVQDAVGHLKTQGMQILATNLSASAVDFREVDYTRPTCILLGQEKTGITADALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
 gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
          Length = 218

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD+     +        +++G E  G+  +    A 
Sbjct: 64  THRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 112]
          Length = 184

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +A + G EG G+  + +E AT    +  PG +++LNV+ AAAV L+     
Sbjct: 120 YDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQ 178


>gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis
           ATCC BAA-381]
          Length = 226

 Score = 89.9 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L+   +   ++   K     L    +      +  +  +   + +    
Sbjct: 2   IIYGKQLFLHILDVHKQNFKEIYLAKEIDKSLFAKISRL-GVKILKIDNKK-AQALAHGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   +        +  ++ ++ L++L +++D  NIGAI+RSA A   D I    +  
Sbjct: 60  NHQGFLAKVDEFEFCEIADLKEAKFLVILWNLSDIGNIGAIVRSAYALGADAICVVSKN- 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                     AS    +   I   +    L          I  ++   + ++      K 
Sbjct: 119 --LQIEGVIRASSGAAYEIKIARIDDGAGLINELKQIGFQIFAATMDGEDIKTAKIGAKT 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ALILG+EG+G+  K          + M     +LNVS A A+  
Sbjct: 177 ALILGSEGEGIPQKIVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220


>gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
 gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
          Length = 366

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 13/234 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVP-- 97
                 +  + G + V  AL         L          RL     L     +  V   
Sbjct: 115 RRPGETDELVVGRNAVVEALRAGI-PAATLYVAGGLEFDERLTEARKLAGRAGMAVVDIG 173

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
              +D++ G  A HQGLAL   P      D         +  LL+ LD V DP N+GA++
Sbjct: 174 RFELDRLCG-VAPHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVV 232

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTI 210
           RSA AF   G++  +R +   +A   K+++GA   +P  R +NL                
Sbjct: 233 RSAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVG 292

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++      +     D I L++G+EG+GL     E    +  + M G +++LN
Sbjct: 293 LAANADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346


>gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16]
          Length = 227

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+  L  V+  Q L+VL  + D  NIG I RSA     +G+I    ++
Sbjct: 62  NHQGVLARVELPLALPLKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 229

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ A++R+A A     +      S     + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
 gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
          Length = 229

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R S L ++++HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NQRMSDLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVSL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +      K  S+      L  D++   + +      A +LGAE  GL  +    
Sbjct: 76  RDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLTEEATAL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  LY      
Sbjct: 135 MDQAIFIPMRGMVQSLNVSVATATLLYEALRQR 167


>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
 gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
 gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
 gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
 gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
 gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
          Length = 229

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 227

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   + ++ +++    N  A++R   AF    + T +     E        +     + 
Sbjct: 37  MRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIVRGTDQWVDVR 96

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    A  +   +         +   P   ++     AL+ G E  G+  +    A
Sbjct: 97  RHPSTGEALAALRSAGYRIVATTPHREDVTPETFDVAAGPFALVFGTEHAGISDEVIAGA 156

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278
                + M G++++LNVS +AA+ +Y       
Sbjct: 157 DEFLRIPMCGMVESLNVSASAAILIYMLSERMR 189


>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
 gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
          Length = 229

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 QEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
          Length = 238

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 1/155 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L +V++ V+ PHN+ AILR+  A                +       S     +
Sbjct: 23  NHRMGDLTVVMEQVDKPHNLSAILRTCDAVGALEAHVVSLPGRPRTFNNTAKGSQKWVPL 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      LS D+    + +        ++GAE  G+  +    
Sbjct: 83  HPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCD-FTGPSCFLMGAEKWGMSEEALAL 141

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + M G++++LNVS AAA  L+       +
Sbjct: 142 VDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQR 176


>gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
 gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
          Length = 246

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 14/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
            + G   V     +    +  +   ++A        ++       V  V  +    + G 
Sbjct: 2   LVEGPQAVRELAAHRPDAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSGD 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                  A+ +   LS  L      + ++VL    DP N+G I+R+A AF   G++    
Sbjct: 62  --SQGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAG 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----------QTIGLSSDSK 217
              + S  + +S++G++ HIP   + +  DA   +H                       +
Sbjct: 120 TVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +   A + G E +GL          +  + M G  ++LNV++AAA  L+ +Q
Sbjct: 180 GVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQ 239


>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
           leucogenys]
          Length = 420

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 89/317 (28%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGAVAKTFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L    N      +  V  + I            + +   P    +  P      +  
Sbjct: 152 LKELP--VNKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRVPIINNL 269

Query: 194 NLT---------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------- 227
                             D                       +    +            
Sbjct: 270 EWETVPSYLPPDTRVYVADNCGFYAQAQMSNKASDHGWVCDQQVLKFHKYEEEEDVETGA 329

Query: 228 --------------------KIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
                                 A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPDVEVQSYCSDWTAAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
 gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
          Length = 237

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 6/231 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE- 108
           F+   + +  AL+     +  +    +   +            +K V  + ++ IVGK  
Sbjct: 2   FISSKNAIVEALSKDLVDVIYIKFPISKREKEIIKLAERKKVLIKNVDKREMESIVGKVY 61

Query: 109 ----AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +V +   +     L   L+      L+ +LD + D HN+GAI+R+A  F   GII 
Sbjct: 62  SIAASVKENAEIGIDVFLDRALEKTSTP-LIFILDSITDVHNLGAIIRNAYFFDLGGIII 120

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  +   +  + + ++GA  H+P    +NL   ++ M   GF     S      LE   
Sbjct: 121 PKDNAAPINEKVYEISAGAAYHLPISIETNLNRVIEIMKDKGFWVYYASEKGDTSLENFK 180

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +   A+ILG E  G+R   ++ +     +       +LNVS A+A+  Y 
Sbjct: 181 FDTPTAIILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSAASAIISYA 231


>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           A1163]
          Length = 484

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 120/364 (32%), Gaps = 94/364 (25%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ----------------------- 45
             K   ++    AK  + HR  + +Q  ++  R   +                       
Sbjct: 105 EPKRPRIQTHERAKTIKEHRKERDLQDRSRLKRGEIRFTEGEPEQQKKHVLVPDSVPYTT 164

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFPVK--TVP 97
           P + F+YG   V AAL +  R++++L   +     L           L     VK     
Sbjct: 165 PASEFIYGTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKVKMAYAG 224

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLS---------------------------------- 123
              +   +     H G  L+ +PL                                    
Sbjct: 225 WDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEEAMVNST 284

Query: 124 ------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                   L       ++++LD + D  N+G I+RSA     D I+   R     S +  
Sbjct: 285 NNRVPVRHLPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITI 344

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---------- 227
           K+++GA E++P I++SN  D +Q+  + G++     +        +   D          
Sbjct: 345 KASAGAAENMPLIKVSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNAVTQ 404

Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMPGI------------IKALNVSNAAAVALY 274
               ++LG+EG GL    +  A S+  +                 + +LNVS AAA+ + 
Sbjct: 405 APSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILME 464

Query: 275 ITQN 278
               
Sbjct: 465 QFLR 468


>gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 5   RQPDLTICMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSNSWVQVK 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD      +        +++G E  G+  +  + A 
Sbjct: 64  THRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALDLAD 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 124 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 227

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I     +      +   SA         
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S      +         +   SD+     +       A+ILG+E  G   K ++ A 
Sbjct: 74  THDSIEEAITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
          Length = 174

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 55  YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 110


>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
          Length = 422

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 96/318 (30%), Gaps = 61/318 (19%)

Query: 22  KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     K++ S     +      +   + L G   ++ AL   +       +    +
Sbjct: 93  RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKIFFFSRLEYI 152

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQL 134
             L  +        +  V  + I            + +   P    +  P         L
Sbjct: 153 KELPIE--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHAKMTYPETQLRHTLPL 210

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   +
Sbjct: 211 LLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLD 270

Query: 195 LTDALQKMHSWGFQTI-------------------------------------------- 210
                + + +     +                                            
Sbjct: 271 WETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGWVCDRRAKLHQYEEEGEDVESG 330

Query: 211 ----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
                L     +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 331 ASKGWLPELQVQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDS 390

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 391 LNSAMAASILLFEGKRQL 408


>gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
 gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
          Length = 249

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 17/257 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
             + K +     + R           G   V   L         LLAT + L        
Sbjct: 4   RAEIKWLHGL-TRKRQRDAEGLFIAEGPKVVGDLLA--LFPCRLLLATADFLQSKAQWPA 60

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V+ +    + ++   +A  Q +           +      +L + LD + DP N
Sbjct: 61  A----EVRELSASELVRVSLLQAPQQVV---AVFEKPTPVPWQPTDELALALDGLQDPGN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F    I+ +   + + +  + ++  GAL  I    +       +      
Sbjct: 114 VGTIIRLADWFGIHNILCSPTTADAFAPKVVQATMGALGRINLHYVDLCEALAKLPVETP 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262
                L   +         + K  +I+G EG+G+ P  +   +    +          ++
Sbjct: 174 IYGTFLDGPNIYEQS---LDTKGLIIMGNEGQGISPAVERFVSKRLFIPRFPLNATGSES 230

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A A+     +  
Sbjct: 231 LNVAMATAIVCAEFRRR 247


>gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 229

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ A++R+A A     +      S     + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 197

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L +VL++V DPHNI A+LR+  A    D  +     +  +      S+S A     +   
Sbjct: 20  LTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKRWGHKSSSSAAKWLTVHQFS 79

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              T        +        +   K L +      +AL+ G E +G+  + ++      
Sbjct: 80  DTATCMAVVREKYDKIYTTHLAADAKSLYELDFTGSVALVFGNEQEGVSEEIRKLCDGNF 139

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            +   GIIK+LN+S A AV++Y     
Sbjct: 140 IIPQVGIIKSLNISVACAVSIYEAMRQ 166


>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
 gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus]
          Length = 413

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 57/335 (17%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVS 58
             I    S+   + ++S   +  +     K++ S     +      +   + L G   ++
Sbjct: 74  QQIQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIA 132

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AL   +       +    +  L  +         VK    +    +V  + +    A  
Sbjct: 133 DALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKP 192

Query: 118 TAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               ++     +R++  + ++ D++ DP N+G ILRSA    C  ++ TK    +    +
Sbjct: 193 DHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKV 252

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT--------------------------- 209
            ++  GA   +P I   +       + +                                
Sbjct: 253 LRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRD 312

Query: 210 --------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                 L     +  + +      A+++G E  G+  ++ + A 
Sbjct: 313 QRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAE 372

Query: 250 S----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           S       + +   + +LN + AA++ L+  +   
Sbjct: 373 STGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407


>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
          Length = 449

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 57/335 (17%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVS 58
             I    S+   + ++S   +  +     K++ S     +      +   + L G   ++
Sbjct: 74  QQIQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIA 132

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AL   +       +    +  L  +         VK    +    +V  + +    A  
Sbjct: 133 DALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKP 192

Query: 118 TAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               ++     +R++  + ++ D++ DP N+G ILRSA    C  ++ TK    +    +
Sbjct: 193 DHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKV 252

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT--------------------------- 209
            ++  GA   +P I   +       + +                                
Sbjct: 253 LRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRD 312

Query: 210 --------------------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                 L     +  + +      A+++G E  G+  ++ + A 
Sbjct: 313 QRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAE 372

Query: 250 S----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           S       + +   + +LN + AA++ L+  +   
Sbjct: 373 STGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407


>gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     I            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEI-HAVWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 227

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
 gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
          Length = 180

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +    L++LD + DPHN+G+ILR+A A   DGII  +R +   ++V+AK+++GA++++P 
Sbjct: 21  KADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPV 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R++NL   +  +   G+   G +         +    K  L++G EGKG+ P   +   
Sbjct: 81  VRVNNLVQTVDTLKDKGYWFFGTAMSGDNYTNWD-ARGKCVLVIGNEGKGISPLLLKQMD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G +++LN   A  + LY   N  
Sbjct: 140 QTLTIPMTGHVQSLNAGVATGILLYQMFNSR 170


>gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 277

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 105/272 (38%), Gaps = 8/272 (2%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            K++     R         +            + L LYG + V A      + + +L   
Sbjct: 5   WKNARRPSSRPPRATPLPPREGGTPPPPGRGNDELRLYGWNAVQALFAKRPQALRKLYLV 64

Query: 75  KNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEA----VHQGLALETAPLLSPTLDA 128
              + R+       + +    + V    ++K+         V   L     PL     D 
Sbjct: 65  DALIPRMQPVLKWCVANRVGYRVVEEGDLNKLAATTHHEGLVADVLRAPVVPLAQWLADL 124

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +   L + LD V +PHN GAILRSA  F    ++     + + S   A+ A G  E +P
Sbjct: 125 EQGPVLALWLDGVGNPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAARVAEGGAESVP 184

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +++     A+ ++ S GF       +    + +    +++  ++GAEG+G+        
Sbjct: 185 LVQLPETAQAMAQLRSAGFGLAATLVEGGDDVFRASLPERLVYVMGAEGEGMDRGLAGQC 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
                +   G +++LNV++A AV L  + ++ 
Sbjct: 245 DLQVSIPGSGAVESLNVASATAVLLAQWASRR 276


>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
 gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 50/293 (17%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTV 96
           +      +   + L G   ++ AL   +       +    +  L  D         VK  
Sbjct: 5   KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIKVKFE 64

Query: 97  PPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             +    +V  + +       +   +  P         L+++ D++ DP N+G ILRSA 
Sbjct: 65  DIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTILRSAA 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALE---------------HIPYIRISNLTDALQ 200
              C  ++ TK    +    + ++  GA                 H+P      + D   
Sbjct: 125 GAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCG 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-----------------------------KIAL 231
                         D          +                                A+
Sbjct: 185 HYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAV 244

Query: 232 ILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E  G+  ++ + A         + +   + +LN + AA++ L+  +   
Sbjct: 245 VIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297


>gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium]
          Length = 239

 Score = 89.5 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A        
Sbjct: 15  MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKI 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                    ++      Q        +ILG E   +  +    A
Sbjct: 74  KTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
           [Nitrosomonas europaea ATCC 19718]
          Length = 154

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P N G I+R          +   R    + +      +G   H      
Sbjct: 1   MLQIILHQPEIPPNTGNIIRLCANTGAQLHLI--RPLGFDLSDRQLRRAGLDYHEWARLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A       G +   +++ +     +         + G+E +GL  +  E      
Sbjct: 59  VHEDLASCLKLMDGCRIFAVTTRATHHHGKVAYTGNDVFLFGSETRGLPAEVLENFPQDQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNAAAV +Y      
Sbjct: 119 RIRIPMLSASRSLNLSNAAAVIIYEAWRQI 148


>gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20]
 gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20]
          Length = 227

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILERHKELINELYLAKECD-KETFKKIASSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L  ++  + + +L  ++D  NIGAI+R+A A   DG+I      
Sbjct: 60  NHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGAIVRTAYALGVDGLIFIGERL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +     +++   L ++   GF+    +S  K+    ++   K 
Sbjct: 120 AME--GVIRTSSGAALDLEIALNNDIFTVLNELKQVGFKLFASASGGKQIHHYKVDKGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ALILG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 ALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221


>gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 230

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     +      +     +++ +A       
Sbjct: 14  NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEV-HAIWPTSRMKTLVSSAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 225

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V++   DP N+ A+LR+  AF    +   +            S +       
Sbjct: 23  NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPYDRNKKISQNADKWLDV 82

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                     +  +P+       K+AL+ G E +G+  +    A
Sbjct: 83  RRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGKVALVFGNEQRGVSEEALALA 142

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + M G +++LNVS AAA++L       
Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174


>gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
 gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
          Length = 153

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      +L
Sbjct: 4   VVLVYPQIPPNTGNIARTCAATGTELHLVAPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G +                 L+ G+E  GL         +  ++ 
Sbjct: 64  EAFQATHQERGGRCLGFTVRGNFNYASFQFQADDWLLFGSETTGLPSTILSDCDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AV+L+  +   
Sbjct: 124 MAEPHVRSLNLSVSVAVSLFEARRQL 149


>gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
 gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
          Length = 495

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 116/365 (31%), Gaps = 92/365 (25%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------- 49
           M  +   K  K         A    +    K+      K       E +           
Sbjct: 112 MKFVPDPKMPKSTWPGSKVEASKEEDPPKMKRAGRMKLKRGVHRFTETMPEFLKHHIKVP 171

Query: 50  -----------FLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFP 92
                      FLYG   V AAL    R++++L   +     L           L     
Sbjct: 172 DFISHATPASQFLYGTSAVEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRKLALSKNIK 231

Query: 93  VK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------------------- 127
           VK        +   +     H G  L+ +PL    +                        
Sbjct: 232 VKMAYAGWDRLFDQMSSGRPHNGCILDASPLPVLPIKSLCAVPSLDVNEFRVTLAAQSRE 291

Query: 128 -----------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                              R   ++++LD + D  N+G I+RSA     D I+   R   
Sbjct: 292 EALVNSTNDRIEIRHPPNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCA 351

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--- 227
             S V  K+++GA E++P ++++N  D +Q+  + G+Q     +        +  +    
Sbjct: 352 PLSPVTIKASAGAAENMPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMT 411

Query: 228 -------KIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNA 268
                     L+LG+EG GL P  +  A S+  +              P  + +LNVS A
Sbjct: 412 RNPLTQAPSVLMLGSEGFGLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVA 471

Query: 269 AAVAL 273
           AA+ +
Sbjct: 472 AAILM 476


>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
 gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
          Length = 241

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++LD V+  +NI A+LRSA A     +        +       ++        
Sbjct: 15  NRQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQL-HAVWPESAMRVSGNTASGSQQWVKT 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                +   S + K   +       A++LG E  G+  +    A
Sbjct: 74  LRHQTVTDAITALKADGMQVVVTNFSPNAKDFREIDYTKPTAIVLGHEKNGVSDEAVRLA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + M G++++LNVS A A+ L+  +   
Sbjct: 134 DAEVIIPMVGMVQSLNVSVAGALVLFEAERQR 165


>gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
 gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
          Length = 321

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 41/295 (13%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-------NPSRKIFQL 71
           H + L   +   K +    + S +    E++ + G + +                ++  L
Sbjct: 30  HVSSLS--NPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAPFELEML 87

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------- 123
           L  +      +             +    + K+ G ++     A+    L S        
Sbjct: 88  LVVEERDFPQELSTFSQRTV---FLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPD 144

Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                          N   L++LD + DP N+G +LR+A AF+ DG+          +  
Sbjct: 145 ESLASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDK 204

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------- 228
             +++  A   +P    +          +      G+            KN         
Sbjct: 205 TLRASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKI 264

Query: 229 -----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                + L+LG+EG+GL    +  +     + MPG  ++LNV+    + +++  N
Sbjct: 265 KSEKSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318


>gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
          Length = 212

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 10/219 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++   +N   +L   +          V    +  +   +   QG+   
Sbjct: 3   EEAVQAGVT-IEKIFTLENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P  R+++     +             S       +    +   L++G EG
Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211


>gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 229

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +++++V  PHN+ AI+RS  A                +       S     I   +++
Sbjct: 22  LTVLIENVEKPHNLSAIIRSCDAVGVLEAYAIFNKEKFLTFNSTAQGSQKWVKINQYKMT 81

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                + K   +      L+  S    +        A +LGAE  G+  +         H
Sbjct: 82  TEAIKVLKEKGFKLYGTNLNPRSIDYRKCN-FKGPTAFVLGAEKWGISEEASSLMDEHIH 140

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G++++LNVS AA+  L+      
Sbjct: 141 IPMRGMVESLNVSVAASALLFEAIRQR 167


>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 280

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 23/247 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTVP 97
           +YGV  + AA     R    L    N               ++W  N  H     V+TV 
Sbjct: 21  VYGVAPIRAAFLAERRIFHTLYVQTNLVDNIATGKRKDKQAVNWILNRAHNLEMKVETVS 80

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAI 150
            Q ++ +V     HQGL L+ +PL     + +    +        + LD V DP N GAI
Sbjct: 81  KQHLNLLVD-NRPHQGLVLDASPLELVPCEYLERPSIQDGRSPVWVALDEVIDPQNFGAI 139

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRS       G++   + S   S V++K+++GALE +      N+   L      G++ +
Sbjct: 140 LRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVMEIQSCRNMMKFLDTSVQNGWRAV 199

Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           G SS+ +    QE++      L+LG EG+GLR   + + T +  +     + +LNVS AA
Sbjct: 200 GASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKRSCTELVSIK-ADAVDSLNVSVAA 258

Query: 270 AVALYIT 276
            + L+  
Sbjct: 259 GILLHDL 265


>gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC
           29413]
          Length = 153

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++       +
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G S        Q        L+ G+E  GL P       +  ++ 
Sbjct: 64  EAFENVHQERGGRLLGFSVSGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AV L+  +   
Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQL 149


>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
          Length = 229

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD+     +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 226

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++V+  HN+ A++RSA A     +      +         +         +
Sbjct: 16  RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEM-HAIWLTKKARLSGGTALGSQNWVKIH 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                +   S+      +       A++LG E  G+  +  + A 
Sbjct: 75  NHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEALDIAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G++++LNVS A AV LY  Q    +
Sbjct: 135 YHVMIPMVGMVQSLNVSVAGAVMLYEAQRQREQ 167


>gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 230

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHNI A++R+A A     +      +     +++ +A       
Sbjct: 14  NCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQV-HAIWPTSRMKTLVSSAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47]
          Length = 302

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 93/250 (37%), Gaps = 11/250 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +  RH    +     G   V   L++    +  +L      ++       P   PV  + 
Sbjct: 50  RNLRHRETDDGFIAEGSLVVGRLLHSGLG-VQSVLIHTGRESKYLPLI--PDSVPVYLID 106

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154
            +   ++ G +  H+G+           L+  R+S    L + L  ++DP N+G++LRSA
Sbjct: 107 RELGKELAGYD-FHRGVLAHGFSPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSA 165

Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            A     I+    T    +     V   S      +     +  L D      +     +
Sbjct: 166 AALGVRDILLGPQTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLL 225

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++     L   I++ +  L++G E  GL P+  E AT  + L M     +LNV  A+A
Sbjct: 226 DDTAIPLIDLSSAIQSKRRILMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASA 285

Query: 271 VALYITQNHF 280
           + LY      
Sbjct: 286 IFLYELTRLR 295


>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
 gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
          Length = 338

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 100/273 (36%), Gaps = 23/273 (8%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
                  ++   K      +   +  +  ++ + G         +            +A+
Sbjct: 74  EERITSTDNATVKHFAKLVRNRGYREECGSIVVAG---------SGILSEVCGGGGGDAV 124

Query: 79  AR-----LDWDANLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP----TL 126
                  L  DA +P       +   P   + K  G ++V +  A+    +        L
Sbjct: 125 GSARVLFLADDACVPAGVTASRIVRAPEHVLKKAAGLQSVDRVDAVAELSMPPVVGVAAL 184

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +       L+ LD + DP N+G ++R+A+A   D +          +    ++A G +  
Sbjct: 185 EGAGRITRLLALDGIQDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGVFR 244

Query: 187 IPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P  R++    + + +           ++D+         +  + L+LG+EG+GL     
Sbjct: 245 MPMARLTWEELEEVTRRDGLQRFCAEPTADATAADTAATGSKGLCLVLGSEGQGLSDVAL 304

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            T      + MPG +++LNV+ A  + LY+ + 
Sbjct: 305 RTC-EPVAIPMPGEMESLNVAVAGGILLYLMRR 336


>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V++   DP N+ A+LR+  AF    +   +            S +       
Sbjct: 23  NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPYDRNKKISQNADKWLDV 82

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                     +   P+       K+AL+ G E +G+  +    A
Sbjct: 83  RRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVFGNEQRGVSEEALALA 142

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + M G +++LNVS AAA++L       
Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174


>gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 236

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 82

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 83  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAD 142

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 143 QDIIIPMVGMVQSLNVSVASAVILYEAQRQR 173


>gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 262

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 5/232 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +        V+  +++  R +  +LAT++  A                     + K+ G
Sbjct: 30  NSFIADSPKVVNLLIDSGIR-VKSILATEDYYAEEQSRLEALQKVDFYVADKTMMKKVTG 88

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
              +H G+ +         ++ +     +++L  ++   N+G I RSA A      +  +
Sbjct: 89  Y-NIHHGVMMHAFRPEEYKINQLDEQ--IIMLAELSKNDNVGTIARSAAALGVKSYLVPR 145

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIK 225
           +          + + G +  +      +L + + +            +S     L     
Sbjct: 146 QGPHPYGRRALRVSMGYISRLKVSVYDDLLNTISELQSLGYQVIAAEASQHAIDLSTLEV 205

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +K  L++G EG GL  K QE    +  + M   IK+ NV  AAA+ +Y   
Sbjct: 206 PNKWVLLMGHEGLGLSQKVQEACDCVVKIEMDEDIKSFNVGVAAAILMYQMA 257


>gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
 gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
 gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
          Length = 156

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++      ++      + 
Sbjct: 4   VVLYQPEIPPNTGNIARTCAATDTPLHLIEPLGFELSDRYLKRAGLDYWPYVQLTTHPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +   Q+    G + I  ++  +             L+ G E  GL      +      + 
Sbjct: 64  SVFRQQQQQQGGRLIAFTTKGELNYLDCDFQATDWLLFGRETSGLPEDVLASCDHRVRIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNH 279
            P   +++LN+S + A+ L+  +  
Sbjct: 124 TPQAGVRSLNLSVSVAIGLFEARRQ 148


>gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 278

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 22/270 (8%)

Query: 1   MNLI---SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57
           M++I   S    E++         +LRR+                 ++           +
Sbjct: 1   MSMIIQLSSAADERVKDYSKLTDTQLRRS---------------VEAEQGLYIAESSKVL 45

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL    +        +  L  L          PV       +++I G       LA  
Sbjct: 46  RRALATGHQP-RSFFMAEKWLESLADVFEAYPDIPVYCGSDAVLEEITGFHLHRGALAAM 104

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P     +  +  ++ + VL+ + D  N+GAI RSA A   D ++ + R +        
Sbjct: 105 NRPEPIDFVSLLSGARRVAVLEDIVDHTNLGAIFRSAAALEIDAVLISPRCADPLYRRSI 164

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILG 234
           + + GA+  +P+ R++   + L K+ S GF T+ L+ +       E      +++ALILG
Sbjct: 165 RVSMGAVFQVPWARLTQWPEDLSKLKSAGFSTVALALEQDSMTLDELATKLPERLALILG 224

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            EG+G              + M G + +LN
Sbjct: 225 TEGEGPSAPVLAEVDQTVMIPMSGGVDSLN 254


>gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
 gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
          Length = 236

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 82

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 83  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLAD 142

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 143 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 173


>gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus
           caballus]
          Length = 420

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 96/316 (30%), Gaps = 59/316 (18%)

Query: 22  KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     K++ S     +      +   + L G   ++ AL   +       +  + +
Sbjct: 93  RYDKALPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLDYI 152

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQL 134
             L  D        +  V  + I            + +   P    +  P      +  L
Sbjct: 153 KELPTD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHSLPL 210

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   +
Sbjct: 211 LLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLD 270

Query: 195 LTDALQKMHSWGFQTI-------------------------------------------- 210
                  + +     +                                            
Sbjct: 271 WETVPNYLPTDTRVYVADNCGLYAQAQTSNKASDHGWVCDRQLSKLHKYEEEVDLETGAS 330

Query: 211 --GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALN 264
              L     +  + +      A+++G E  G+  ++ + A         + +   + +LN
Sbjct: 331 KGWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAENTGGKRLVIPVVPGVDSLN 390

Query: 265 VSNAAAVALYITQNHF 280
            + AA++ L+  +   
Sbjct: 391 SAMAASILLFEGKRQL 406


>gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M]
 gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M]
          Length = 234

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 22/251 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  + K     Q  ++    +   +YG H +  A  N +  +  +  +         
Sbjct: 4   SKQNPTF-KKLKKLQLKKYRDLYQQFLVYGDHLIEQAQKNNA--VVTIFTSNEEK----- 55

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   + P  + ++   + V + +AL      +  L        ++VLD + D
Sbjct: 56  --------PGTFIAPSLMKELSQTKTVFEQMALCKPTSENNLLSDK-----ILVLDDIQD 102

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RSA AF  + +  +   +        +S+ GAL  +   R +  +   +   
Sbjct: 103 PANLGALMRSASAFGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGNTKSFLEEIKE 162

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                       +   +E   K  K  L+LG EG+G+  +T+  +    ++     +++L
Sbjct: 163 KNYSIFSAFPQKANITMEDAKKYPKKVLVLGNEGQGISLETEALSDYFVNICTQ-NVESL 221

Query: 264 NVSNAAAVALY 274
           NV+ A ++ +Y
Sbjct: 222 NVAVAGSILMY 232


>gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 218

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 4/206 (1%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128
              N                +K V P  I+ ++   + HQG+AL+ + +        L+ 
Sbjct: 1   MKNNNEISKILRLCKQKNINLKQVNPNYINSVLPHNSNHQGIALKASVIDSTTVEEVLNT 60

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            + S  +++LD V D HN+G+I+RSAV F+ D II     SPSE+  ++K++SGA++ IP
Sbjct: 61  SKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIILPYHNSPSENCGMSKTSSGAVDMIP 120

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            + + N+ + ++ +   G+   G  +   + L +   + K  +I G+E KG+R  T+E  
Sbjct: 121 IVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENC 180

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + +   I +LNVSNAAAVALY
Sbjct: 181 DFLLKIAISKKIDSLNVSNAAAVALY 206


>gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30]
          Length = 227

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VIYGKQVLMRILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DGII    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     ++  T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227]
          Length = 370

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 276 TQNH 279
               
Sbjct: 364 WWRQ 367


>gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
 gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
          Length = 277

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 9/259 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NL 87
           Y ++     +S        + L  ++ ++ A+      +  +   +  L RL  +     
Sbjct: 20  YVRLTDRQLRSVLDPNSALVILESLNVITLAVREGVELV-SVFVERRHLERLLAELPSLS 78

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V       + ++VG   V   LA    P      + +  +  + VL+ + D  N+
Sbjct: 79  ERDIEVFVASRAVMSEVVGFNVVRGYLAAARRPHPREAQEVLEGASRVAVLEGLTDVSNV 138

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ RSA A   D ++     +   +    +++ G +  +P+                  
Sbjct: 139 GALFRSAAALGVDALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFDALRAD 198

Query: 208 QTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               ++    +   +          ++AL  G+EG GL           A + M   + +
Sbjct: 199 GFTSVALALDECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSAIIPMSRGVDS 258

Query: 263 LNVSNAAAVALYIT-QNHF 280
           LNV+ ++AVA +       
Sbjct: 259 LNVAASSAVAFWELCARRR 277


>gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
          Length = 345

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 229

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
          Length = 487

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 84/215 (39%), Gaps = 17/215 (7%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-----------APLLSPTLDA 128
           +           PV  V  Q +D       VH G+ ++              +    +D 
Sbjct: 273 KEIIKKCKELGVPVYPVKKQLLDTFSKW-NVHNGMVMDCSPLTAESIDKLQVITKEAMDK 331

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++  L++ LD + DP N GAI+R+   F   G++TT ++S   + V +K+++GALE  P
Sbjct: 332 LKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAGALEDTP 391

Query: 189 YIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  ++         +          +  KPL          L++G EG G+     + 
Sbjct: 392 IYKTMSMYGFLKGSKENGWKIMGTSLGEDSKPLNSVKLTQPTILVIGNEGFGVSDNIIQE 451

Query: 248 ATSMAHLHMPGII----KALNVSNAAAVALYITQN 278
                 + +        ++LN S +A + +    N
Sbjct: 452 CDETVKIPVSNKANPKLESLNASVSAGIVINHLLN 486


>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 229

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVEVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 229

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ AI+R+A A     +            + + +A         
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             ++                    SD      +        +++G E  G+  +  + A 
Sbjct: 75  THLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCILMGQEKTGITQEALDLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 230

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +        +   +++ +A         
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV-HAVWPGKTMRTMVSTAAGSNSWVSVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +                 S +     +        +++G E  G+  +    A 
Sbjct: 75  THPDISSAVSTLKAEGMQILATNLSSTAVDFREIDYTRPTCILMGQEKYGITAEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
 gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
          Length = 250

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L            +   +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFSDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKDFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
 gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
          Length = 258

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   ++ V++ + +  N+ A++RSA A     +                +         
Sbjct: 63  NRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQRTAQGAQHWLDV 122

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +    A     +              P+         AL+ G E  G+     E +
Sbjct: 123 WHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLEAS 182

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + +PG  ++ NVS AAAVALY  Q   
Sbjct: 183 DAACEVPLPGFTESFNVSVAAAVALYHAQQDR 214


>gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855]
 gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855]
          Length = 247

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   ++ V++ + +  N+ A++RSA A     +                +         
Sbjct: 52  NRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQRTAQGAQHWLDV 111

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +    A     +              P+         AL+ G E  G+     E +
Sbjct: 112 WHWDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFTQPTALVFGNEDAGVTDTMLEAS 171

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + +PG  ++ NVS AAAVALY  Q   
Sbjct: 172 DAACEVPLPGFTESFNVSVAAAVALYHAQQDR 203


>gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 209

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L   R   L ++L++V+DPHN+GA+LRS  +     I         ++  L      +  
Sbjct: 12  LAQNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAG 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLR 241
              +I +    +    M         + +           +       AL+ G E  GL 
Sbjct: 72  SRKWIDVYLYREVDACMEHVRRNYQRVYATHLAHDAKSLYELDLAQSAALMFGNEADGLS 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 A     +   G+ ++LNVS A AV+LY      +
Sbjct: 132 ELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRS 171


>gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 246

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 19/249 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   + +    QK +   Q   + + G  T+        +     +     +       
Sbjct: 12  SNEHLRYLSKLKQK-KFRLQEGLVIVEGKRTLEQLFAWDIKAKELYIVESEPIVSAAIS- 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                    TV  Q + ++   E   +   L + P                 LD ++DP 
Sbjct: 70  --------YTVSEQGMKRLCDSEQPQKIAGLFSLPKPRKIAFKKAF-----YLDDISDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I R A AF+ D +I + +     S  + +++ GA+  +P+           K H +
Sbjct: 117 NLGTIFRIAAAFNIDCLILSPKTCEISSPKVIRASLGAVYKVPFFFCEMEKLQELKAHIF 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G    +         ++   + LG E KG+     + A     + MPG +++LNV
Sbjct: 177 ALDMQGKIPLTNF----APPSEPYIVALGNEAKGISSSILKIAEETLCIPMPGEMESLNV 232

Query: 266 SNAAAVALY 274
           S ++A+  Y
Sbjct: 233 SVSSAILAY 241


>gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7]
          Length = 227

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +   L    P          + + K  
Sbjct: 4   VVYGKQVMMHLLNSHQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  ++ +Q L+VL  + D  NIG I RSA     DG+I    ++
Sbjct: 62  NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFA 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +      +S  L +     +   T  L             +S       + +   K 
Sbjct: 120 KELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSLNVSVAAGILM 223


>gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus
           13826]
          Length = 226

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       LN   + + ++  +K    +L +         +  V  Q    +     
Sbjct: 2   IIYGKQLFLHILNKRPQILEEIYLSKECDKKL-FSKICGTGKKIIRVDNQKAQSMA-HGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG     +         ++    + VL  ++D  NIGAI RSA A  C+G++   +  
Sbjct: 60  NHQGFLASVSEFEFSDFSELKKLNFIAVLYGISDVGNIGAIARSAYALGCEGLVIVTKSV 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +       +S    +   I I     +L          +  ++ + K +++     K 
Sbjct: 120 NMQ---GVLRSSSGAAYEIPIAIFEDGLSLLNELKQCGFRLYATASNGKNIKEMKFAGKR 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL++G+EG+G+  K          + +     +LNVS A A+  
Sbjct: 177 ALVMGSEGEGIPQKALAKCDECVGIKLKDGWDSLNVSAAFAIIC 220


>gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
 gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
          Length = 152

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R+  A      +       ++   L ++       +      
Sbjct: 1   MHIVLVEPEIPANTGNIARTCAATGATLHLVRPLGFYTDDRHLRRAGLDYWHLVKIYYHD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMA 252
           +  D  +      F      +  ++   Q        L+ G E  GL  +  +       
Sbjct: 61  SFADLCRAYPDACFFLTTTRA--ERWYTQVRYPPGSFLVFGKESTGLPEEILQAFPDRWI 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN++NA A+ LY     
Sbjct: 119 RIPMVPGARSLNLANAVAIVLYEALRQ 145


>gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771]
          Length = 343

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 73/191 (38%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  V  + I  I  ++     + +             R  +  + LD V DP N+
Sbjct: 6   ASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNL 65

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A    G+I     +   S    ++  G++  +P  R +       +  +   
Sbjct: 66  GTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFLAWRKSAGVS 125

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                 + +      + +   I L++G E  GL  +  + A ++A +   G   +LN++ 
Sbjct: 126 VVATHLAGAVDYRTIDYRKKPIVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAV 185

Query: 268 AAAVALYITQN 278
           A AV L+  + 
Sbjct: 186 ATAVMLFEARR 196


>gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
 gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
          Length = 156

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I+R +    C   +        E   + ++     E+    R 
Sbjct: 1   MFNIVLVHPEIPPNTGNIIRLSANTGCKLYLIEPLGFNFEDKHMKRAGLDYWEYADIKRF 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +    L+       +   +++ +++ +++         + G+EG GL  + +       
Sbjct: 61  PSYEAFLEAEKPDRDRMFAMTTKAQQLVQEVSFKPGDWFVFGSEGSGLPQEVRALFDPAH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           M  L M    ++LN+SN+ A+ +Y     
Sbjct: 121 MVRLPMRPNNRSLNLSNSVAITVYEAWRQ 149


>gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 231

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +            +++ +A         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAIGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    S+      +        +++G E  G+  +  E A 
Sbjct: 75  THRSIADAVSCLKGQNMQILATHLSEKAVDFREVDYTRPTCILMGQEKTGITQEALELAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
 gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
          Length = 250

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L            +   +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
 gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
          Length = 231

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V  PHN+ AI+R+A A     +      +     +++ +A         
Sbjct: 16  RQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQV-HAVWPTTRMRTLVSSAAGSNNWVNVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    S       +        ++LG E  G+  +    A 
Sbjct: 75  THHTISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
 gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
          Length = 250

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L            +   +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFSDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 98

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +A ++G EGKG+     +    +  + M G I +LN S AA++ +Y   +   
Sbjct: 37  VNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQVVSKRK 95


>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
 gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
          Length = 231

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +     +++ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTSRMRTLVSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    S       +        ++LG E  G+  +
Sbjct: 69  SWVNVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 229

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
 gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
          Length = 321

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 35/292 (11%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLAT 74
           H + L   +   K +    + S +    E++ + G + +      A+ N +   F+L   
Sbjct: 30  HVSSLS--NPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAAFELEML 87

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----------- 123
                R               +    + K+ G ++     A+    L S           
Sbjct: 88  LVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPDESL 147

Query: 124 -----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                       N   L++LD + DP N+G +LR+A AF+ DG+          +    +
Sbjct: 148 ASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLR 207

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------- 228
           ++  A   +P    +          +      G+            KN            
Sbjct: 208 ASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKSV 267

Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + L+LG+EG+GL    +  +     + MPG  ++LNV+    + +++  N
Sbjct: 268 KSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318


>gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
 gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score = 89.1 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ ++ PHN+ AI+RSA A     I             ++ +A        
Sbjct: 4   MRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHNI-HAVWPDQHVKLSVSSAAGSNSWVKV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S      Q         +   SDS     +        +++G E  G+  K    A
Sbjct: 63  IPHQSTENAISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQEKTGISDKALALA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 123 DQHIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 154

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   +   N G ILR    F  +  I      P   A   ++    ++ + + R ++ 
Sbjct: 5   IALYCPDIAQNAGTILRIGACFGIEVHIIEPAGFPVGDAGFRRAGMDYIDQVTWRRHASF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +  + G + +  ++   +PL          L+ G E  G+       A +   + 
Sbjct: 65  AAFDAERRAEGRRVVLFTTQGAEPLFGFRFQPDDVLLFGRESAGVPESVHAVADARLRIP 124

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ +A +AL      
Sbjct: 125 MRAGVRSLNVAVSAGIALAEALRQ 148


>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 229

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
 gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
          Length = 241

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 20/255 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84
            ++ ++  +QK ++ ++     + G H V      AL NP  +  +L  T       +  
Sbjct: 2   KFEDIKKLHQK-KYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                PF    +  + + +I   +     +AL   P+    + A    +  + L  + DP
Sbjct: 54  EQWQSPFKTHLISDRQMAQIADTKTPQGIVALV--PMPDAPVSAPVAGERAIYLHEIQDP 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+   F     + +       +  + +S+ GA+ H P      L     +   
Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDVALDSLRTRFAR 171

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263
                +                     + G E +G+         +    +   G I++L
Sbjct: 172 IACLDMQGEPVQSTAFTTFE-----CYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226

Query: 264 NVSNAAAVALYITQN 278
           N++    +  Y    
Sbjct: 227 NLAATVNMCAYELSR 241


>gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 274

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 11/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A +        LL+ K     +  +    
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYEMRSMLLSAK--WIDVMREVIEE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVND 143
              PV  V P   +++ G   VH+G          P           + + + V + + D
Sbjct: 75  TTAPVYAVTPALAERVTGYH-VHRGALASMQRKPLPDAGALLSPGTGDVRRVAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+++  + L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLR 193

Query: 204 SWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF T  L    +          + +K+AL+ G EG GL P+    A +   + M   +
Sbjct: 194 QAGFTTAALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 229

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +      S     + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPSSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
 gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 50/293 (17%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPFPVKTV 96
           +      +   + L G   ++ AL   +       +    +  L  D         VK  
Sbjct: 5   KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIKVKFE 64

Query: 97  PPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             +    +V  + +       +   +  P         L+++ D++ DP N+G ILRSA 
Sbjct: 65  DIKDWSDLVTPQGIMGIFAKPDPVKMTYPETLLHHTLPLVLICDNLRDPGNLGTILRSAA 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALE---------------HIPYIRISNLTDALQ 200
              C  ++ TK    +    + ++  GA                 H+P      + D   
Sbjct: 125 GAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCG 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-----------------------------KIAL 231
                         D          +                                A+
Sbjct: 185 HYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAV 244

Query: 232 ILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E  G+  ++ + A         + +   + +LN + AA++ L+  +   
Sbjct: 245 VIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297


>gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 229

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 250

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L                +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL         
Sbjct: 115 GNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 232

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +            +++ +A         
Sbjct: 16  RQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    SD      +        +++G E  G+  +  + A 
Sbjct: 75  THSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQQALDLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
 gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
          Length = 310

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81
           ++    ++       +    ++     + G   V  A+ +   ++  +  T+ AL R   
Sbjct: 42  SNPASARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHVPGRVLDVYLTEAALERHSE 101

Query: 82  DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            WD  +     V     Q +D +    + +   +A E A        A+  ++L+ VL  
Sbjct: 102 IWDEAVTAGLYVHVTTQQVMDAMSPDAQGLLAVVATEEATGSEALAAALEGARLVAVLTQ 161

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
             DP N G I+R+A A   D ++  +      +  + +S +G+L H+P +    L DA+ 
Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +H+ G   +         L +         A +LG E  GL P+    A ++  + + G
Sbjct: 222 ALHNAGLTVLAADGRGDFDLFEVESLLEAPSAWLLGNEAHGLPPEALSRADAVVSIPIYG 281

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LNV+ AAAV LY +  
Sbjct: 282 KAESLNVAAAAAVCLYASAR 301


>gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 153

 Score = 89.1 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 1/150 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL +   P N G I R+  A   +  +         +  L ++       +     
Sbjct: 1   MLRVVLVYPEIPPNTGNIARTCAATQTELHLVEPLGFEISNRYLKRAGLDYWPFVKLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++     Q     G +++  S        Q    +   LI G+E  GL P   + ++++ 
Sbjct: 61  ASWAAFEQVRQQQGGRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPPDILQDSSAVL 120

Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHFA 281
            + M    +++LN+S +AAV L+  +   A
Sbjct: 121 RIPMAHEQVRSLNLSVSAAVGLFEARRQLA 150


>gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 229

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 250

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L                +   ++V D + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVFDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL         
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 249

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 28/269 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S K+   +  ++ +  + +   +   K ++   + ++     +   + G H V  AL   
Sbjct: 3   SSKRKGLLNQMEKTVISSVS--NPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA-- 54

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
                     KN +  +  + +         V    +  I         +AL   P    
Sbjct: 55  ----------KNLVIEIFEEESKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKS-- 102

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                +    +++LD+V DP N+G I+R+A  F  D +I+   +   +  V A   +   
Sbjct: 103 -----QIKNKVILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYN-DKVVRATQGALFQ 156

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +     +     +      L  DS K  E +I  +K+ LILG EG G+    
Sbjct: 157 VSLIKENNNEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNL 216

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      ++ +    ++LNV+ A+ + L
Sbjct: 217 YKYCDQKVYIPI--EFESLNVAVASGIIL 243


>gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 229

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253]
          Length = 345

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRLAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 226

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ ++ PHN+ AI+RSA A     I             ++ +A        
Sbjct: 4   MRQPDLTLCLEEIHKPHNVSAIVRSADAIGIHQI-HAIWPDQHVKLSVSSAAGSNSWVKV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S      Q             S+      +        +++G E KG+  K    A
Sbjct: 63  ISHSSTEDAIAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQEKKGISQKALALA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 123 DQHIIIPMAGMVQSLNVSVASALIMYEAQRQR 154


>gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120]
 gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120]
          Length = 153

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++       L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G S        Q        L+ G+E  GL P       +  ++ 
Sbjct: 64  EAFENAHQERGGRLLGFSVGGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AV L+  +   
Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQL 149


>gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays]
 gi|238014636|gb|ACR38353.1| unknown [Zea mays]
          Length = 347

 Score = 88.7 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 33/115 (28%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            + +   S         S          I  S                          + 
Sbjct: 180 HVISCDSSKRYRDNRHVSMGAEKWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVY 239

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   A+++G E +G+     E +     + M G++ + NVS AA + ++  
Sbjct: 240 DMDWSQPTAIVVGNELRGISDDALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 294


>gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli
           LF82]
 gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 345

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTSVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 230

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + ++ V+ PHN+ A++R+A A     I      +     +++ +A       
Sbjct: 14  NCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEI-HAIWPTSRMKTLVSSAAGSNSWVQ 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +                    S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
 gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
          Length = 298

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 30/278 (10%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNP--------------SRKIFQ 70
           H   +++++           +     + G       L                  + + Q
Sbjct: 10  HPRAERVRAVAALAGRSARRRTGTFLVEGPQACREVLRAHLGEGPAAAAGQWRAGQVLAQ 69

Query: 71  LLATKNALARLDWDANLPHPFP-----------VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +  +   + R    A L                V+    + +  +         +A+   
Sbjct: 70  VYVSVGLVDRDPALAELVARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARM 129

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P        +  ++L  VL  V DP N G ++R+A A   D ++ T       +  + +S
Sbjct: 130 PQPQTVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRS 189

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAE 236
            +G+L H+P +       A     + G Q           L+           A + G E
Sbjct: 190 TAGSLFHLPVVTAVPAEAAAAAARAAGLQVWAADGYGADRLDALAPGLVAAPTAWLFGNE 249

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +GL       A     + + G  ++LNV  AA V LY
Sbjct: 250 AQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 345

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++VL++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLVLENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +  + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 87  YTRPTCILMGQEKTGITQEALDLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142


>gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
          Length = 246

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 14/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
            + G   V     +    +  +   ++A        ++       V  V  +    + G 
Sbjct: 2   LVEGPQAVRELTAHRPFAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSGD 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                  A+ +   LS  L      + ++VL    DP N+G I+R+A AF   G++    
Sbjct: 62  --SQGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAG 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----------QTIGLSSDSK 217
              + S  + +S++G++ HIP   + +  DA   +H                       +
Sbjct: 120 TVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +   A + G E +GL          +  + M G  ++LNV++AAA  L+ +Q
Sbjct: 180 VVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQ 239


>gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V+ P N+ AI+RS  AF     +          A    +         +
Sbjct: 16  RQPDLRVLTDQVHKPRNLSAIIRSCDAFGLA-NMHVVWPKEGFRAFRKTAGGSFHWVTTH 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +             SD      +        +I+G E  G+ P T E A 
Sbjct: 75  THPTMDNAVTELKAQGHKLYAAQLSDRAVDFREVDYTVPCTIIMGNEVDGVNPVTAEQAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G++++LNVS+A ++ L   Q    
Sbjct: 135 EHIVIPMMGMVESLNVSSACSIILSEAQRQRK 166


>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
          Length = 212

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 10/219 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L         FP      + I   +      QG+   
Sbjct: 3   EEAVQAGVT-IEKIFALENYRNQLAA-------FPQTVWISEDILLDLADSQTPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P  R+++     +             S       +    +   L++G EG
Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211


>gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis]
 gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 41/278 (14%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
             +  +   + L G+  V  AL      I    + KN + +L       +  P   V  +
Sbjct: 1   RSYRDRHNRILLEGLRIVHDALLANMEPITIFYSNKNLIDKLTSKLPSRYFVP---VDDK 57

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           T+  ++        + +   P     +++     L ++ D V DP N+G I+R+  A  C
Sbjct: 58  TMKNLLTALTPPGIVGVFKKPCSQLKIES-NVLPLTVICDRVKDPSNLGTIVRTCAAAGC 116

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYI----------------------------- 190
             +ITT+  +      + +  +G    +P                               
Sbjct: 117 QALITTEYSTDLWDPKVLRGGAGGHFRVPLYGLLSWKQIADMLGDDTRLYLAESDNTGKI 176

Query: 191 ----RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                   + +     H +G   + L S      E +      ALI+G E  G+  + Q 
Sbjct: 177 IISPWKYFVVENPISWHCYGTLNLDLGSIIIPYFEVDWTLGPSALIVGGETTGISTEAQM 236

Query: 247 TA----TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A        H+ M G I +L+   + A+ +Y      
Sbjct: 237 LACGERGQAVHIPMVGNIDSLSAGISVALIVYEAFRQI 274


>gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 229

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +++++V  PHN+ AI+RS  A                +       S     I   + +
Sbjct: 22  LTVLIENVEKPHNLSAIIRSCDAVGVLEAYAIFNKEKFLTFNSTAQGSQKWVKINQYKKT 81

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                + K   +      L+  S    + +      A +LGAE  G+  +         H
Sbjct: 82  TEAIKVLKEKGFKLYGTNLNPRSIDYRKCD-FKGPTAFVLGAEKWGISEEASSLMDEHIH 140

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G++++LNVS AA+  L+      
Sbjct: 141 IPMRGMVESLNVSVAASALLFEALRQR 167


>gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
 gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
          Length = 155

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I+R          +        +   L ++      H     
Sbjct: 1   MPLHIVLYQPEIPPNTGNIIRLCANSGAQLHLIKPLGFVLDDKRLRRAGLDY--HEWARV 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             + +      +    +   +S+            D  ALILG E +GL  + ++    +
Sbjct: 59  QIHESFTEFLENGKVGRCFAVSTKGAVGYHTPHYQDGDALILGPETRGLPEEIRKHPRVS 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M    ++LN+SNAAA+ LY       
Sbjct: 119 ACIRIPMMENSRSLNLSNAAAIMLYEAWRQLN 150


>gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
 gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
          Length = 237

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 4/230 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-E 108
           F+   + ++ A++    +   +    +   +            +K V    ++KIVGK  
Sbjct: 2   FITSKNAITEAISKNLVETLYIKFPISKREKDIIKLAEKKKVLIKNVDKNEMEKIVGKVY 61

Query: 109 AVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           ++   +       +   L      +++ L+ +LD + D HN+GAI+R+A  F   GII  
Sbjct: 62  SIAADIKENAEIGIENFLQKALEKKDNPLIFILDSITDVHNLGAIIRNAYFFGSSGIIIP 121

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  S   +  + + ++GA  H+P    +NL   ++ M   GF     S + +  LE    
Sbjct: 122 KDNSAPINEKVYEISAGAAYHLPISIETNLNRTIELMKDKGFWIYYASEEGETSLEDFKF 181

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           N   A+ILG E  G+R   ++ +     ++      +LNVS A+AV  Y 
Sbjct: 182 NTPTAIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSAASAVIAYA 231


>gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818]
 gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 230

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +  A+      I +    K     L          P+K V  +   + + +  
Sbjct: 2   IIYGKQPILYAIETCPCSITEFYLAKELPRDLFSQLAKLDK-PIKRVDNKK-AQALSRGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +  P  + +L  ++    L+VL  ++D  NIG+I R+A A    GI+      
Sbjct: 60  NHQGILAQIIPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLPSL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             ++       S          +      +         T+  +    +   +     K 
Sbjct: 120 SQKAIEGIVRLSSGAFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIEN--PQKW 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E  GL  + +    +M  + M     +LNV+ A  + +
Sbjct: 178 ALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGILI 221


>gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 345

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EHI  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 360

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 116 RRQRAEETRVYGENACQALFASRPDAIVRAWFIQSITPRFREALRWMAANRKTYHVVDEE 175

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+                 + L    ++ L+ V +PHN+GAI+RS  
Sbjct: 176 ELVKASGTE-HHGGVCFLIKKRQGLDAQTYLKNPLATDCVLALEEVGNPHNLGAIVRSCA 234

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++  +  +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 235 HFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDIFRQAGYTIVTTSSH 293

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L Q     KI L+L  E  GL     +       +   G + +LNVS A  + L  
Sbjct: 294 KGTALAQAKLPAKIVLVLRQERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLAD 353

Query: 276 TQNH 279
               
Sbjct: 354 WWRQ 357


>gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
          Length = 345

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EHI  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
 gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
          Length = 229

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ A++R+A A     +      S     + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPSSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 229

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD+     +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
          Length = 152

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++      H+P ++ S+ 
Sbjct: 4   IVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L+       + +G S  + +   +        LI G E KGL P+ Q     +  + 
Sbjct: 64  GEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S AAAV L+ ++    
Sbjct: 124 MTCSAVRSLNLSVAAAVVLFESRRQLI 150


>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
          Length = 472

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 54/285 (18%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100
           + F+YG H V +A+    RKI+ L   +    +L            +     VK V  + 
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 101 ---IDKIVGKEAVHQGLALETAPLLSPTLD--------------------------AVRN 131
              + ++  + A                 +                              
Sbjct: 198 SQALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQDSYDDHRTQHNPR 257

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + DPHN+GAILRSA  F  D +  + R S   S V+ KS+SGA EHIP I 
Sbjct: 258 YPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLIS 317

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------DKIALILGAEGK 238
           I +    +      G++       +    + + KN                 L+LG EG 
Sbjct: 318 IHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGD 377

Query: 239 GLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVALYITQN 278
           GL  + +  A +   +      +   + +LNV+ A+ +       
Sbjct: 378 GLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMR 422


>gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88]
 gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88]
 gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034]
 gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146]
 gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 110-3]
 gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  E++  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89]
 gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
 gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 370

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  E++  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 276 TQNH 279
               
Sbjct: 364 WWRQ 367


>gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli UMNK88]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
 gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
          Length = 349

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
 gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
          Length = 349

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
 gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
          Length = 349

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
 gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
          Length = 349

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 349

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 276 TQNH 279
               
Sbjct: 343 WWRQ 346


>gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
          Length = 247

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 3   RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 63  ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 122 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 181 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 240

Query: 276 TQNH 279
               
Sbjct: 241 WWRQ 244


>gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
 gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
 gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026]
 gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 179

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +  + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 60  YTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 115


>gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A]
 gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989]
 gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
 gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A]
 gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989]
 gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W]
 gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11]
 gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536]
 gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972]
 gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101]
 gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
 gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972]
 gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101]
 gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU
           83972]
 gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327]
 gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 60-1]
 gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           AA86]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
 gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2930-71]
 gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
 gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
 gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046]
 gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197]
 gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11]
 gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9]
 gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354]
 gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088]
 gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50]
 gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736]
 gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739]
 gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5]
 gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94]
 gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1]
 gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088]
 gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354]
 gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1]
 gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 85-1]
 gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
 gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212]
 gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B]
 gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
 gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
 gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 117-3]
 gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044]
          Length = 345

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 282

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 105/289 (36%), Gaps = 30/289 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I S  D           +Y  +     +SR   +           +S A+        
Sbjct: 3   EPITSTTDPRLE-------EYTNLTDMRLRSRFEPERGVYIAESATVISRAITAGHAP-R 54

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             L +   + ++    +     P     P  ++++ G   VH+G          P+LD  
Sbjct: 55  SFLMSPKWVEQMTPLMDQFPNIPAYVGAPGLLEELTGF-NVHRGALASMHRPALPSLDDF 113

Query: 130 RNSQL------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                                  + VLD + D  N+GAI+RS  A   DGII     +  
Sbjct: 114 MTRITRTHQPNALGIDGQSARSRIAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADP 173

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDK 228
                 + + G +  +P+ R +NL + L  +H   + T       +           +DK
Sbjct: 174 LYRRAIRVSMGTVFQVPWTRANNLIEVLDLLHEAHYTTAALALSDNAITLDQFNAENHDK 233

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G EG GL  +T  T + +  + M G + +LNV+  +A+  Y T+
Sbjct: 234 VAFLFGNEGHGLSDRTLATVSRVVTIPMAGDVDSLNVAATSALVFYATR 282


>gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album]
          Length = 368

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R+  + +V++   D  NI A+ RSA A     +      S          + GA + + 
Sbjct: 167 NRSYSVWLVVEGATDFGNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLD 226

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247
                +  +  + + S G++ +    +S       +      A++ G E +G+  +    
Sbjct: 227 IELWDSTQECFRNLKSRGYRIVTAHLESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGL 286

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + M G++ +LNVS AA + ++       
Sbjct: 287 SDLHCSIPMRGMVDSLNVSVAAGILMHHAVRDRT 320


>gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24]
 gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 272

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K        D    
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLSAK--WVDAMRDIIDA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            P PV  V P   +++ G       LA      L      +  ++ ++V++ VND  NIG
Sbjct: 75  APAPVYVVDPALAERVTGYHVHRGALASMQRKPLDTAAGLLTTARRVVVMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D I+ +   +        K + GA+  +PY R+      L  +   GF 
Sbjct: 135 AIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPAGLAAVGEAGFT 194

Query: 209 TIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D +          + D++AL+LGAEG GL  +    + +   + M   + +LN
Sbjct: 195 LLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWVRIPMSHGVDSLN 253


>gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
 gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
          Length = 228

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V+   N+ AI R+  A   D I         ++     +++        
Sbjct: 16  RQPDLTVITDEVHKGRNLSAITRTCDAVGIDTIHCVMPEDGYQTYNGTSASAE-KWVAVQ 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                     D+             AL+LGAE KG+ P+      
Sbjct: 75  HHSSISAPVNDLKREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAAAAVD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++ NVS AAA+ L   Q+  
Sbjct: 135 YNVTVPMVGMVESFNVSVAAAIILMEAQHQR 165


>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 250

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L                +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           155-74]
          Length = 206

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 1/143 (0%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +            + + +A            +    
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGNRMRTMASAAAGSNSWVQVKTHRTIGDA 59

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                           SD+     +        +++G E  G+  +    A     + M 
Sbjct: 60  VAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMI 119

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G++++LNVS A+A+ LY  Q   
Sbjct: 120 GMVQSLNVSVASALILYEAQRQR 142


>gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 229

 Score = 88.7 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 1/155 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R S L ++ + V  PHN+ AILR+  A          + S   +       S     +
Sbjct: 16  NRRMSNLTVLAEEVEKPHNLSAILRTCDAIGILQAHAVFKQSKIPTFNSTAQGSQKWVKL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                  +     K   +      L+    K           A +LGAE  GL       
Sbjct: 76  VKHPNIEVAIKSLKGEGFKIYGTNLNEQ-AKDYRLFDYKGPTAFVLGAEKWGLSQLATSL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + M G++++LNVS A+A  L+       K
Sbjct: 135 VDESIFIPMRGMVQSLNVSVASATLLFEALRQREK 169


>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
 gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
          Length = 229

 Score = 88.4 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ V+  HN+ A++R+A A     I            +++ +A        
Sbjct: 4   MRQPDLTICLEEVHKSHNVAAVIRTADAVGIPKI-HAIWPEEKMRMLVSPAAGSNSWVNV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                    SD      +        +I+G E  G+       A
Sbjct: 63  ETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQEKTGISQDAIALA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 123 DQDIIVPMMGMVQSLNVSVASALILYEAQRQR 154


>gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 227

 Score = 88.4 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTSAGARNWVEVD 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 272

 Score = 88.4 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 5/238 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K      D    LP 
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDELPA 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV  V P+  +++ G       LA      L      +  ++ +++++ VND  NIGA
Sbjct: 78  --PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTADQLLGAARRVVIMESVNDHTNIGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+      L  +   GF  
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLDAVRDAGFTL 195

Query: 210 IGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+ D K     E    + D++AL+LGAEG GL  K   +A     + M   + +LN
Sbjct: 196 LALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWVRIPMAHGVDSLN 253


>gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 228

 Score = 88.4 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R  +L ++L+ V+  HN+ AI+R+A A   + +  T+    ++   +  + S     I
Sbjct: 14  NHRQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVHATRETKTTKVCGVTATGSQNWVKI 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                     A  +          L SD+     +       A+++G E  G+  +    
Sbjct: 74  HTHENIEDAIAALRAQGMQIIATNL-SDTAIDFREVDYTKPTAILMGQEKTGISAQALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G+ ++LNVS A+A+ LY  Q   
Sbjct: 133 ADQDVIIPMLGMCQSLNVSVASALILYEAQRQR 165


>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
 gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
 gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
 gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
 gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           4343-70]
 gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
 gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
          Length = 206

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 87  YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142


>gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 227

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I     +      +   SA         
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGLHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S      Q         +   S +             A+ILG+E  G   + ++ + 
Sbjct: 74  THDSIDEAVCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLSD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVVLYEAQRQR 164


>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
 gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
          Length = 206

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 87  YTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 142


>gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 227

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 2/147 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L   L+ V+ P+N+ A++R+A A     I     +      +   SA            S
Sbjct: 20  LTFCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNDMRTLSHTSAGARNWVEVETHDS 77

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 +         +   SD+     +       A+ILG+E  G   + ++ A     
Sbjct: 78  IGKAVAELKDQGMQILVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEEAKQLADQDII 137

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M G++++LNVS A+AV +Y  Q   
Sbjct: 138 IPMIGMVQSLNVSVASAVIMYEAQRQR 164


>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 223

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 1/154 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L ++++ VN PHN+ AILR+  A               ++       S     +
Sbjct: 16  NCRMRNLTVLVEAVNKPHNLSAILRTCDAAGVFEANFISEKDKVKTFNSTAQGSQKWVKL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +    +  K   +      L+            ++    +LGAE  GL  +    
Sbjct: 76  NNHETTISAVSELKKKGFKLYGTTLNER-STDYRNFDYSENTCFVLGAEKWGLSDQLISK 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + M G++++LNVS A ++ L+       
Sbjct: 135 VDESIFIPMSGMVQSLNVSVATSILLFEAIRQRK 168


>gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116]
          Length = 227

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTSAGARNWVEVD 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Pentastiridius sp.]
          Length = 239

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I        S  ++ A +A        
Sbjct: 15  MRQPDLTVCLENVHKPHNISAVIRTADAVGIPQI-HAIWCKNSSKSLSAAAAGSNHWVKV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                    ++      Q        +ILG E   +  +    A
Sbjct: 74  KTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALTLA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 226

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ ++ PHN+ AI+RSA A     I             ++ +A        
Sbjct: 4   MRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHQI-HAIWPDQQVKLSVSSAAGSNSWVKI 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                    S+      +        +++G E  G+  +    A
Sbjct: 63  ISHTSTEEAIAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMMGQEKTGISQQALALA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 123 DKHIIIPMAGMVQSLNVSVASALILYEAQRQR 154


>gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis
           JLW8]
          Length = 154

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        E   L ++     E+      
Sbjct: 1   MFHIVLFEPEIPPNTGNIIRLCANTGAQLHLVKPLGFSLEDKQLKRAGLDYHEYANLKVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            N  D    +       I                   A + G E +GL  + +   TA  
Sbjct: 61  ENWEDCKAALAGHRLFAITTKG--STTHSHIQFKAGDAFVFGPETRGLSEEVRNEFTAEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN+AA+ LY      
Sbjct: 119 RVRLPMLPNSRSLNLSNSAAILLYEAWRQI 148


>gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 231

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +            +++ +A         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPGSRMRTMVSSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    SD      +        +++G E  G+  +  + A 
Sbjct: 75  THRSIADAVTCLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163]
 gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617]
          Length = 231

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +            +++ +A         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAVWPGSRMRTMVSAAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    SD      +        +++G E  G+  +  + A 
Sbjct: 75  THRSIAEAVACLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 GDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
 gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
          Length = 226

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ V+ PHN+ AI+RSA A      I            ++ +A        
Sbjct: 4   MRQPDLTICLEEVHKPHNVSAIVRSADAVGIH-TIHAIWPDQQVKLSVSSAAGSNSWVNV 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S      Q         +   S+      +        +++G E KG+  K  E A
Sbjct: 63  ISHPSTEAAISQLKSQNMQVLVTHLSEQAVDFREIDYTQPTCIMVGQEKKGISAKALELA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 123 DKHIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
 gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
          Length = 227

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLAHTSAGARNWVEVD 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+             A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIDTAISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILGSEKVGASDRAKKLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
 gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
          Length = 212

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 10/219 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L   +          V    +  +   +   QG+   
Sbjct: 3   EEAVQAGVT-IEKIFALENYRDQLATFSQT------VWVSEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L +  + V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLNQGKFLFL--EDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P  R+++     +             S       +    +   L++G EG
Sbjct: 113 RSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 173 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211


>gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 154

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   I        E   L ++     +     R 
Sbjct: 1   MFHIALYEPRIAPNTGNIIRLCANNGCHLHIIEPMGFDFEDKKLRRAGLDYSDLAHVTRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +     ++M+      +  ++   +  +Q        L+ G+E  GL  + +++  A +
Sbjct: 61  PDYAVFAEQMNGRRI--LACTTKGSRHYDQMDYQKGDVLLFGSETAGLPAELRDSFPADN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M    ++LN+SN+ A+  Y      
Sbjct: 119 LLKIPMHPTSRSLNLSNSVAIITYEAWRQL 148


>gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894]
          Length = 189

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + I  I  ++     + +             R+ +  + LD V DP N+G I+R+A A  
Sbjct: 1   KVIASITRRDNPQMVVGIFEQRWKPLKDIRPRDGETWVALDRVRDPGNLGTIIRTADAAG 60

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I     +   S    ++  G++  +P  R +       +  +         + +  
Sbjct: 61  ASGVILVGEATDPFSLETVRATMGSVFAVPVARATPEEFIAWRKSAGVSIVATHLAGAVD 120

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               + +   + L++G E  GL  +    A ++A +   G   +LN++ A AV L+  + 
Sbjct: 121 YRTIDYRKKPVVLLMGNEQSGLPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARR 180

Query: 279 HF 280
           H 
Sbjct: 181 HL 182


>gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
 gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
          Length = 304

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 21/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87
           Y ++     +     Q           +  A+    + +  LL     + +  L     +
Sbjct: 21  YVRLTERELRCVLEPQKGIFIAESAKVIERAVRAGYQPLSFLLGERWLDQMMPLFERLVV 80

Query: 88  PHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLM 136
                  PV     + ++++ G       LA    P   P  +               + 
Sbjct: 81  REGAGPVPVFVASMELMEQLTGFNVTRGALAAFRRPRQIPVDEFLDGVVEAAGERPVRVC 140

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +  
Sbjct: 141 VLEGIVDHTNVGAIFRSAAALNVDGILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEA 200

Query: 197 DALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETA 248
                       +     +      +    +D +       A+ +G EG GL  KT    
Sbjct: 201 RVWPHDGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEIDRLAIFMGTEGAGLGAKTIAGC 260

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M   + +LNV+ A+AVA +  
Sbjct: 261 DRAVRIPMAHGVDSLNVAAASAVAFWQL 288


>gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
 gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 229

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGNRLRTMASSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +      Q   S         SD      +        +++G E  G+  +
Sbjct: 69  SWVTVKTHPTISEAVAQLKASGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
          Length = 420

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 90/315 (28%), Gaps = 52/315 (16%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135
           L  L  D         VK    +    +V  + +    A      +  P      +  L 
Sbjct: 152 LKELPVDKLKGVSLIKVKFEDIKDWSNLVTPQGIMGIFAKPDHVKMAYPKTQLQHSLPLS 211

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ DP N+G ILRSA    C  ++ TK         + ++  GA   +P I     
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIINNLEW 271

Query: 196 TDALQKMHSWGFQT---------------------------------------------- 209
                 +                                                     
Sbjct: 272 ETVPNYLPPDTRVYVADNCGLYAQAQMSNKASDHGWVSNQRLLKFQKYEEEEDVETGASQ 331

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNV 265
             L     +  + +      A+++G E  G+  ++ + A         + +   + +LN 
Sbjct: 332 DWLPDVEVQSYDSDWTEAPAAVVIGGETDGVSVESLQLAESTGGKRLLIPVVPGVDSLNS 391

Query: 266 SNAAAVALYITQNHF 280
           + AA++ L+  +   
Sbjct: 392 AMAASILLFEGKRQL 406


>gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens]
          Length = 1088

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 27/267 (10%)

Query: 38  QKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFP 92
           Q  +            L G ++V   + +    +  +  ++   A  +    A      P
Sbjct: 38  QNLKERDVAGRGDLFILEGENSVHNLVQHGRMPLESVCVSERRVAPMKSLIAAVRARGVP 97

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNI 147
           V  +  +    +VG       LA           +            +++ +  N+  N+
Sbjct: 98  VYALTHEDYSGLVGFNFHRGVLACGRKLPSVAPGELLGALPATGPSTVVLCERTNNLDNV 157

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-----------------I 190
           GA+ R+  AF    ++   R +        + + G    IP+                  
Sbjct: 158 GAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAIPFTRRGSIADVVQAAKASGH 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +  L        S        +         + + +++A+++GAEG GL  + Q  A  
Sbjct: 218 VVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVAVLMGAEGPGLTDEAQRLADV 277

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
              + M   + ++NV+ A ++AL+   
Sbjct: 278 RLTIPMANAVDSVNVATACSIALHELA 304


>gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 302

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 43/293 (14%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H    +   + G  +V  A+   +  +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYATDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117
           K+A              R      L     V  V P  + KI           +     +
Sbjct: 58  KDACEGNEKKSSQFSSLREIVKEALSRSCYVHPVEPSIMQKISADSQGIVAVANSKSLDD 117

Query: 118 TAPLLSPTLDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                   L      +         +     V DP N GAI+R A    CD ++      
Sbjct: 118 IYFSEFKNLQQSAQVKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177

Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              ++ L +S +G+L H           +   +     +     +G   I      K  +
Sbjct: 178 SRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAKSNIRIIAADIYGTDKIKPVPFPKILV 237

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E+ +  +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2]
 gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2]
          Length = 291

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +            + LD +    N+G+I RS  A     +I         +AV   
Sbjct: 119 HKDRTGDRHDRPLLDFHIALDGLRSLFNVGSIFRSCDAAGFSSLILGNTPGRENAAVRKT 178

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +   A        +      +         T   +++  KP      + +  L++G E  
Sbjct: 179 AMGTADWMPHTQTVDLAQTLVDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEY 238

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+          + H+ M G   +LNV+NAAA+ ++  
Sbjct: 239 GISSHVLAVCDQVVHIPMFGRKNSLNVANAAAILMFHI 276


>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 231

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 1/155 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L +VL+ V+ PHN+ AILR+  A                +       S     +
Sbjct: 16  NRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVSLPGRPRTFNKTAKGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      LS D++   + +        ++GAE  G+  +    
Sbjct: 76  HPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCD-FTGPSCFLMGAEKWGMSDEALAM 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + M G++++LNVS AAA  L+       +
Sbjct: 135 VDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRER 169


>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 225

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V++   DP N+ A+LR+  AF    +   +            S +       
Sbjct: 23  NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQTLHAVEGPMKPYDRNKKISQNADKWLDV 82

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                     +   P+       K+AL+ G E +G+  +    A
Sbjct: 83  RRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVALVFGNEQRGVSEEALAVA 142

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + M G +++LNVS AAA++L       
Sbjct: 143 DACYAIPMRGFVQSLNVSVAAAISLAHAVERR 174


>gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
 gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
          Length = 243

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   QK ++  Q     + G   V   LN+    +          A ++   +    
Sbjct: 8   KLIRQLGQK-KYRKQYNQYLVQGEKNVLELLNSSLNAVDVF----ATSAFINAHQSCFPS 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +       + K     + +       A +  P  D  +   L++ LD V+DP N+G I
Sbjct: 63  TDIIEADEDVLTKASTLVSNNA----AIAIVDMPKADLPKIKGLILALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+T+   + + +     +  G+   +   ++                 +
Sbjct: 119 IRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQVDLPAYLQTLKLPIYGAFL 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S  K        N +  L++G+E  G+R       T    +   G  ++LNV+ A  
Sbjct: 179 DGQSVHK-----TQFNGEGVLLMGSESHGIRQACAGLVTDKITIPAFGEAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   +  
Sbjct: 234 IILDNFKRQ 242


>gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 249

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                       +   R   + +VL+++  PHN  A+LRSA A     +   +   P   
Sbjct: 19  WVTPRRFRRMQEVVKERTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTP 78

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           +      +     +   +   +  +  +   +               E ++   K A   
Sbjct: 79  SKGVSMGTARWLSLHRYQDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFF 138

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  GL     E A     + M G +++LN+S  A + L+       K
Sbjct: 139 GGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187


>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
          Length = 423

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 56/319 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 91  LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEY 150

Query: 78  LARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135
           +  L  D         VK    +    +V  + +    A      +  P         LL
Sbjct: 151 IKELPIDKLKGASLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHLLPLL 210

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I   + 
Sbjct: 211 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLDW 270

Query: 196 TDALQKMHSWGFQTI--------------------------------------------- 210
                 + S     +                                             
Sbjct: 271 ETLPNYLPSDTRVYVADNCGLYAQAQMSNKASDHGWVCERRLSKLHKYEEEEEEEDDREP 330

Query: 211 -----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIK 261
                 L     +  + +      A+++G E  G+  ++ E A         + +   + 
Sbjct: 331 GASKAWLPELEVQRYDSDWTEAPAAVVIGGETHGVSLESLELAESTGGKRLLIPVMPGVD 390

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA++ L+  +   
Sbjct: 391 SLNSAMAASILLFEGKRQL 409


>gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
 gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
          Length = 249

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 55/169 (32%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                       +   R   + + L+++  PHN  A+LRSA A     +   +   P   
Sbjct: 19  WVTPRRFRRMQEVVKERTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTP 78

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           +      +     +   R   +  +  +   +               E ++   K A   
Sbjct: 79  SKGVSMGTARWLSLHRYRDPRMAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFF 138

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  GL     E A     + M G +++LN+S  A + L+       K
Sbjct: 139 GGELPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187


>gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
 gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
          Length = 229

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L ++L+HV  PHN+ AILRS  A                +       S     +  
Sbjct: 18  RMANLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSLQGRPRTFNSTAQGSQKWVPLYD 77

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +       K   +      L  ++K   + +      A +LGAE  GL    ++   
Sbjct: 78  HPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCD-FTGPTAFVLGAEKWGLSDTARDLMD 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS AAA  L+      
Sbjct: 137 EAVFIPMTGMVQSLNVSVAAATLLFEAVRQR 167


>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 250

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L                +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKLKLEQLSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +     +  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
 gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
          Length = 229

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++++HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NRRMADLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSLSGRPRTFNSTAQGSQRWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      L  D++   + +      A +LGAE  GL       
Sbjct: 76  RDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLSDAATAL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 MDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 279

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 6/263 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+  +K ++   +   +    +   + G+     ALNN       +  +K+   +L  +
Sbjct: 12  KNNPIFKDLKIAFKNGYNKQISDYFCVGGIKNNLIALNNNWLP-HTIFVSKSFDQKLISN 70

Query: 85  AN---LPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDH 140
                  H      +  Q  D++                  L+     + +    + LDH
Sbjct: 71  IKSKLKQHKVRWIMISDQLNDQLKAINTQAGDCYFYYLLKDLNHPTFDLSDQHNYLFLDH 130

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ILR+A AF    ++     +     ++  SA     +   +  +       
Sbjct: 131 IQDPSNLGTILRNAAAFDLTKVLIHDSVNLYNPKLIRASAGAIFSNQISLIKNLDQFLNA 190

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI- 259
                       + +   PL+Q        +I G E  G+  +    A     + +    
Sbjct: 191 IKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEANGVSEQLLNQADQTIKIVINNQY 250

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
            ++LNV+ ++ + LY     + K
Sbjct: 251 AESLNVATSSGIILYELNKLWKK 273


>gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1]
 gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1]
          Length = 302

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 11/248 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +  RH    +     G   V   L +    +  +L      ++       P   PV  + 
Sbjct: 50  RNLRHRETDDGFIAEGSLVVGRLLQSDLG-VQSVLIHTGRESKYLPLI--PDSVPVYLID 106

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154
            +   ++ G +  H+G+           L+  R+S    L + L  ++DP N+G++LRSA
Sbjct: 107 RELGKELAGYD-FHRGVLAHGFSPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSA 165

Query: 155 VAFSCDGI----ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            A     I     T    +     V   S      +     +  L D      +     +
Sbjct: 166 AALGVRDILLGPHTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLL 225

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++     L   I++ +  L++G E  GL  +  E AT  + L M     +LNV  A+A
Sbjct: 226 DDTAIPLIDLSNAIQSKRRILMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASA 285

Query: 271 VALYITQN 278
           + LY    
Sbjct: 286 IFLYELTR 293


>gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 179

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + I   +      QG+            D      L +  + V DP N+G ++R+A A  
Sbjct: 3   EEILLDLADSQTPQGIVAIVQKEEEQMPDLTSGKYLFL--EDVQDPGNVGTMIRTADAAD 60

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I + + +   S    +S  G+  H+P  R+   T   +             S   K
Sbjct: 61  FTGVIVSSKSADIYSLKTLRSMQGSHFHVPIYRMPVETFVEEAKKGNLPILATTLSQESK 120

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +  + +  AL++G EG+G+ P   E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 121 DYRELARLENFALVMGNEGQGISPFMVEQADQLVHISMKGQAESLNVAVAAGILMFYL 178


>gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 153

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL H   P N G I R+  A + +  +            L ++       +     
Sbjct: 1   MIRLVLVHPQIPPNTGNIARTCAATATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL    Q     G + IG S   ++   +        L+ G+E  GL      +  +  
Sbjct: 61  PNLEIFEQVHQKIGGRKIGFSVSGQENFLKFQFEVGDWLLFGSETDGLPANVLASCDATV 120

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNHF 280
           ++ M    +++LN+S + AV L+  +   
Sbjct: 121 YIPMAQPKVRSLNLSVSVAVGLFEAKRQL 149


>gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 345

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAXHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++  +PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENEXNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 289

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 20/255 (7%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTV 96
           Q           +  AL    +    L+  K     LD   +             P+  +
Sbjct: 33  QDGLFIAESPKVIERALRAGYQPASLLVEEKFLDRDLDDLDHEMAMNQTEGLGRTPIYVI 92

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILR 152
             Q I ++ G   +   LA           D           + +L+H+ +P NIGAI R
Sbjct: 93  NDQQIRQLAGYNLLRGALAAMYRVQRPSFADFLKALPNAHPRIAILEHIVNPANIGAIFR 152

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWG 206
           SA A   DG+I T   +       ++ + G +  +P+  I              ++    
Sbjct: 153 SAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQVPWTYIDAKIWQTEGISLLHRLGYQT 212

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                  +  +    Q +K DK+A+ILG+EG GL  +T   +     + M   + +LNV+
Sbjct: 213 AAMALRHNTIRIDDPQLVKIDKLAVILGSEGPGLEERTIMQSDFSIKIPMATGVDSLNVA 272

Query: 267 NAAAVALYIT--QNH 279
            A+A+A +    +  
Sbjct: 273 AASALAFWELGNRKQ 287


>gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
           M163/99/10]
 gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
          Length = 265

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 18/275 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           G EG+GL  +  E     A + M     +LNV+ A
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATA 264


>gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
 gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
          Length = 345

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVRQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +    +K+ L+LG E +GL    ++      ++   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTTLPEKMVLVLGQEYEGLPDAARDPNDVRVNIDGTGNVAGLNISVATGVLLAE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii]
          Length = 420

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 90/317 (28%), Gaps = 56/317 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKAYSGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           L  L  D        +  V  + I            + +        +  P      +  
Sbjct: 152 LKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIYARXDHVKMTYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA          
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNL 269

Query: 185 -------------------------------------EHIPYIRISNLTDALQKMHSWGF 207
                                                       +       ++    G 
Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVLKFHKYEEEEDVETGA 329

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKAL 263
               L     +  + +      A+++G E  G+  ++ + A         + +   + +L
Sbjct: 330 SQDWLPDVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 226

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D++ DPHN+ A+LRS  AF    +      S         S S        
Sbjct: 40  RQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDVHLYYTTSQWPDLGKKSSGSAMKWIRLI 99

Query: 190 IRISNLTD------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +   T            H  G       S + +P+         A+IL  E +G  P+
Sbjct: 100 RHVDAATMVGNLVGGGGSAHDGGQILRTGFSATARPVMDFDFTIPTAIILSNEHRGTSPE 159

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                    ++ M G++++LNVS AAA+ LY       +
Sbjct: 160 LAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQRKR 198


>gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 148

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R          +        +   + ++      H   +  
Sbjct: 1   MLHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFALDDKRMRRAGLDY--HEWAMVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                    + +   +    ++ +++     +   +  L+ G E +GL  + +       
Sbjct: 59  HYDDWDDFIIKNPKRRIFCCTTKTQQSYCDVVYQPEDILLFGPETRGLPAEIRNQ-HESI 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M    ++LN+SNA A+ L+      
Sbjct: 118 RIPMVENSRSLNLSNAVAIILFEAWRQL 145


>gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 256

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 97/252 (38%), Gaps = 10/252 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +  +    +    ++ G H  SAAL      +  +L    +   L  
Sbjct: 9   SRENTLLKELRKLSTDNTAYRKAGRFWIEGDHLCSAALARG--VVPSVLVVSESFMPLAP 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       +P     +I G E+  +        +  P +  +      ++LD V D
Sbjct: 67  VEYARAAIKTVVIPDAVFREISGLESPAKVG----FLVDLPEVVGIEPMAATVILDRVQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    ++  K  +   S  + ++  GA               LQ + 
Sbjct: 123 AGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLRAGMGAHF----GLRLIEGLELQDLD 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  SS     +++       A  +G EG+G+       A+  A +  PG  ++L
Sbjct: 179 ALKVPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSEALMAKASVFARIGQPGGEESL 238

Query: 264 NVSNAAAVALYI 275
           NV+ AAA+ L+ 
Sbjct: 239 NVAAAAAICLHA 250


>gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 272

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 5/238 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K     +  D     
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAK--WVDVMRDVIEDV 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P PV  V P   +++ G       LA      L      +  ++ + +++ VND  NIGA
Sbjct: 76  PAPVYAVSPDLAERVTGYHVHRGALASMQRKPLPEAEQLLEGARRVAIMESVNDHTNIGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF+ 
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLETWPRGLEAVRHTGFKI 195

Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+ D K     +    +   +AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 196 LALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWVRIPMAHGVDSLN 253


>gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 215

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           MV D V+   N+ AI+R+  A     +         ++       S           +  
Sbjct: 1   MVTDFVHKQRNLSAIVRNCDAVGIQRMHAVIGTEDYKTFRGTAMGSHHWV-DVDTHQNPA 59

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   S          +      Q        +++GAE +G+     E       + 
Sbjct: 60  VALDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRCITIP 119

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++ NVS AA + L   Q   
Sbjct: 120 MVGMVESYNVSVAAGIILAEAQRQR 144


>gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430]
 gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430]
          Length = 231

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +            +++ +A         
Sbjct: 16  RQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV-HAIWPGSRMRTMVSAAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                    SD      +        +++G E  G+  +  + A 
Sbjct: 75  THRSIADAVTCLKGHNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREALDLAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 RDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
 gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
          Length = 223

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R   L++VLD V   HNIGA+ R+A AF  D I      +      L K+A GA 
Sbjct: 59  EFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAE 118

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +    N  DA+  +H  G+  + +       +  +    K+ K A++ G E KG++
Sbjct: 119 FTVDWKYFKNTQDAVNDLHKDGYVVLAIEQCEGSTMLDDLILEKDKKYAIVFGNEVKGVQ 178

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   +      +   G   +LNVS  A + L+       +
Sbjct: 179 QEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECARRLIR 219


>gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 270

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 16/272 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRK 67
           +  S+ D   A++      ++ ++  +   R           G   V   L +     R 
Sbjct: 2   RTISINDPDDARIS----GFRDIRERDLTGR----EGLFVAEGE-VVVRVLASTASRCRP 52

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSP 124
              LL  K   A  D  A L    PV       +D+I G               AP +  
Sbjct: 53  RALLLTEKRVAALSDVIAALAPSVPVYVAGQTVLDRIAGFPLHRGILALGEKPVAPPVEH 112

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L AV +  + ++   + +  N+G + R+A AF    ++  +           + + GA+
Sbjct: 113 LLAAVADEDVFVIASGIGNHDNMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAV 172

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
              P+    +  D +  M + G + + L+  +   L        +AL++G+EG GL    
Sbjct: 173 LRSPFTVGGSAEDLVAAMQTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGLPRVV 232

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       + M G   +LNV+  +A+AL+  
Sbjct: 233 IDRC-RAVGVPMAGGFDSLNVAVTSALALHHV 263


>gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
 gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
          Length = 231

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + L+ V+ PHN+ AI+R+A A     +      +P    +++ +A   
Sbjct: 10  CEMLATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQV-HAVWPTPRMRTLVSSAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    + +                  S       +        ++LG E  G+  +
Sbjct: 69  SWVNVKTHPTIVDAVTHLKDQGMQILATNLSARAVDFREVDYTRPTCVLLGQEKTGITEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALRLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 272

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 5/238 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + +           G   +  A          LL++K     +  D     
Sbjct: 18  YTGLTDVELRRKREPAEGLFIAEGEKVIRRARLAGYEMRSMLLSSK--WVDVMRDVIEDV 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P PV  V P+  +++ G       LA      L      ++N++ + +++ VND  N GA
Sbjct: 76  PAPVYAVSPELAERVTGYHVHRGALASMQRKPLPDAESVLQNARRVAIMESVNDHTNTGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+ +    L+ +   GF+ 
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRDAGFKI 195

Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+ D K     +    +   +AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 196 LALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRIPMAHGVDSLN 253


>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
 gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
          Length = 229

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R S L ++L+HV   HN+ AILRS  A                      +        
Sbjct: 16  NYRISDLTVILEHVEKSHNLSAILRSCDAVGI-IEAHAVSLRERLRIFQNTALGSQKWVR 74

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                S +    Q                             + +LGAE  GL  +  E 
Sbjct: 75  LRNYNSIVPAITQLKQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQEAAEL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A+ L+      
Sbjct: 135 VDQSITIPMSGMVQSLNVSVATAILLFEVLRQR 167


>gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 57-2]
          Length = 345

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +   + K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLSAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
 gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 16-3]
 gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
          Length = 345

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAERDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 251

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 96/252 (38%), Gaps = 13/252 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHP 90
            ++  +QK ++ ++  +  L G H +   +    R+   L +          W  +LP  
Sbjct: 5   NVKKLHQK-KYRAEFGHYLLEGEHLILELVKASERQPHLLKSILYVSPEYVQWAHDLPIS 63

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHN 146
           F V  +  + ++ I        G+        +  L     +    Q  + L  V DP N
Sbjct: 64  FNVIELTTKQMNNISD-TKTPPGIIACVPLESTDQLTTNTTTSADSQRYVYLHEVQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+   F    ++ +       +A + +++ GAL ++P  +  +L    ++   + 
Sbjct: 123 LGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVRASMGALFYVPIEQDISLAQLNERFDEFA 182

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNV 265
           +  +   S +    +          + G E +G+         +    +   G I++LN+
Sbjct: 183 YLDMNGESIAATSFKTMP-----CYVFGNEARGVPRDALTQMPATAFTIKGAGNIESLNL 237

Query: 266 SNAAAVALYITQ 277
           ++A  + +Y   
Sbjct: 238 ASAVNMCMYELM 249


>gi|303237755|ref|ZP_07324314.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302482041|gb|EFL45077.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 231

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 80/256 (31%), Gaps = 34/256 (13%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   + +     G   V+  +         +   ++ + ++ +     
Sbjct: 6   KIKLIRSLETK-KGREKHQLFVAEGHKVVADLVAAGYHA-EDIFDEEDDIKKVSFLQ--- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                 H    L    L  P    +  ++L + LD V DP N+G
Sbjct: 61  ----------------------HPQAKLGVFRLPEPDKVLLPTNELALALDGVQDPGNLG 98

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I  +   +   +  + ++  G++  +                     
Sbjct: 99  TIIRIADWFGIKHIFCSMETADCWNPKVVQATMGSIARVKLHYGDLKAVLNA---LPDDY 155

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264
            +  +      + ++       +I+G EGKG+  + ++       +          ++LN
Sbjct: 156 PVYGTLLDGDDIYKQSLTAHGMIIMGNEGKGMTEEIRKCVNRKLFIPHFASGESHAESLN 215

Query: 265 VSNAAAVALYITQNHF 280
           V+ A A+     +   
Sbjct: 216 VAIATAIVCSEFRRRR 231


>gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 227

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 2/161 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 +   R + L + L+ V+ P+N+ AI+R+A A     +     +      +   S
Sbjct: 6   YHRIHQVLKARQTDLTLCLEEVHKPNNVSAIIRTADATGLHKVHAI--WPDKMRTLTHTS 63

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A            S  T   +         +   SD+     +       A+ILG+E  G
Sbjct: 64  AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + ++ A     + M G++++LNVS A+AV LY  Q   
Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 262

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 30/255 (11%)

Query: 54  VHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ------------ 99
            H+V AAL      + +++ T N  +      +    H  P++T  P             
Sbjct: 8   PHSVLAALQYRPHDVLEIITTANPSSAWSEVLEQARVHRIPIRTALPSSGSERPASGKDR 67

Query: 100 --TIDKIVGKEAVHQGLALETAPLLSPTLDAVR--------------NSQLLMVLDHVND 143
               ++    EA  +  A  T   L                         + + LD + D
Sbjct: 68  GGKFERQSSSEATVRDRAPLTVEQLFEIAPPGPLAQKSDASGGVESNRHGIWLALDCLQD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA+ R+A  F   GII T+  S   S      ++G LE IP+ +  NL  AL+   
Sbjct: 128 PHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQPPNLARALELAK 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +G S  +++PL     +    +++G E  GLR  T E    +  +   G + +L
Sbjct: 188 KSGVWVLGTSEHAQQPLSSIKADRPWLIVIGNEEGGLRRLTLELCDEVCTIPSQGAVGSL 247

Query: 264 NVSNAAAVALYITQN 278
           NVS A  + LY    
Sbjct: 248 NVSVATGILLYALSR 262


>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 280

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 102/254 (40%), Gaps = 7/254 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87
           Y K+ +   ++R       +       V  AL +    +  L       A+ +L  +   
Sbjct: 24  YAKLTNNQLRNRLDPARALMICESPFVVETALLSGCVPLSFLTNASHLEAVQQLIQNYCS 83

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P+  +    I+K+ G       +     P   P  + +  S+ + VL+ + D +N+
Sbjct: 84  VDDVPIFVLSDNQIEKLTGYRMTRGIICAMRRPQARPLEEILSTSKYIAVLEDLVDVNNV 143

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIPYIRISNLTDALQKM 202
           GA+ RSA A + D +I T + + + S  + + + G         +     S       K 
Sbjct: 144 GAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKLKA 203

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           HS+    + L+  +    +  +K  K AL  G+EG GL  KT E       + M   + +
Sbjct: 204 HSFTTCALALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDS 263

Query: 263 LNVSNAAAVALYIT 276
           LNV+ ++AVA +  
Sbjct: 264 LNVAASSAVAFWEL 277


>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
          Length = 250

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 86/256 (33%), Gaps = 15/256 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANL 87
            YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A          
Sbjct: 8   LYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPLNKK 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   +  +  + +   +     L                +   ++VLD + DP NI
Sbjct: 67  ------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDPGNI 117

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A+A     +I         +    ++  GA   + +  I+NL            
Sbjct: 118 GTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKLQQR 177

Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +    +         +        L+ G E  G+      +      +     I++LNV+
Sbjct: 178 KIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESLNVA 234

Query: 267 NAAAVALYITQNHFAK 282
            AA + L+       +
Sbjct: 235 QAATIYLFEGLRQRLR 250


>gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 231

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 2/161 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 +   R + L + L+ V+ P+N+ A++R+A A     +     +      +   S
Sbjct: 6   YHRIHQVLKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTS 63

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A            S  T   +         +   SD+     +       A+ILG+E  G
Sbjct: 64  AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + ++ A     + M G++++LNVS A+AV LY  Q   
Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 152

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    + +    +      +    ++   KP  +        L+ G E  GL  + 
Sbjct: 50  YWHLLDLHYHDSLQELQEQYPNGRFWYFTTKGGKPHHRVQYRPDDFLVFGKETAGLPREV 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       + M   +++LN+SN+ A+ALY      
Sbjct: 110 LSQNPDYCLRIPMLETVRSLNLSNSVAIALYEALRQL 146


>gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 227

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 2/161 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 +   R + L + L+ V+ P+N+ A++R+A A     +     +      +   S
Sbjct: 6   YHRIHQVLKARQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLTHTS 63

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A            S  T   +         +   SD+     +       A+ILG+E  G
Sbjct: 64  AGARNWVEVETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIG 123

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + ++ A     + M G++++LNVS A+AV LY  Q   
Sbjct: 124 ASEQAKKLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 237

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 23/256 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +    K ++  + +   L G + +S A       +  L ++K+ + +   
Sbjct: 3   SKQNPLIKEYKKLQNK-KYRKEKQQFLLEGFNLISEA--KKYTNVITLESSKDLIYKDSI 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V  + I  +   ++    + +         L         ++L++V+D
Sbjct: 60  -----------RVDYEIIKHLSETKSPQSIIGVA------SFLKPTNKINKTVILNNVSD 102

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ILRSA+AF  D +I       +   + +   +           +          
Sbjct: 103 PGNIGTILRSALAFEFDTVIIENIDIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKA 162

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                   L   + K L +    N+KIA+++G E  G+     + A+   ++ +    ++
Sbjct: 163 QNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FES 220

Query: 263 LNVSNAAAVALYITQN 278
           LNV++A A+ L   +N
Sbjct: 221 LNVASALAIILNKIRN 236


>gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 198

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                A + G E  GL       A     + + G  ++LN++ AA++ LY +  
Sbjct: 139 LAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESLNLATAASICLYESSK 192


>gi|298372920|ref|ZP_06982910.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275824|gb|EFI17375.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 253

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 14/245 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +           G   +   L    R  + +   ++    L W  +      V      
Sbjct: 16  KKFRDSYNMFVAEGEKLIMD-LAMSFRCKYLISTDES----LLWSIDAEERIKVD--SIG 68

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFS 158
            + +I       + LA+         +   +   +L++ +D V D  N+G I R A  + 
Sbjct: 69  ELKRISSLTTPSKLLAVFYKADYESVISMSQLRGELVLAIDSVQDTGNLGTIARIADWYG 128

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+ +       +    ++  GAL                         +  +  +  
Sbjct: 129 IGHIVCSHGTVDVYNPKCVQATMGAL--ANVSVCYTNLFQFLSEAQECNIPVYGTFLTGD 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALY 274
            +     ++   ++LG EG+G+        T    +          ++LNV+ A AV   
Sbjct: 187 NIYHRSLSNSGIILLGNEGQGISDSIAGLVTDRITIPHFSASQHRSESLNVAIATAVVCS 246

Query: 275 ITQNH 279
             +  
Sbjct: 247 EFRRR 251


>gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 126

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    A+ILG E  G+     +   +  ++ M G  ++LNV+NA ++ +Y     
Sbjct: 66  WNISYPQDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMYEYCRQ 124


>gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira
           hyodysenteriae WA1]
          Length = 236

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 4/230 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG-KE 108
           F+   +T+  A++    +   +    +   +           P+K V    ++KIVG   
Sbjct: 2   FITSKNTIVEAISKDLVQTLYIKFPVSKREKDIIKLAEKKKVPIKNVDKNEMEKIVGKIY 61

Query: 109 AVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           ++   +       +   ++     R + L+ +LD + D HN+GAI+R+A  F   GII  
Sbjct: 62  SIAADIKENVEIGIDSFIEKAFEKRENPLIFILDSITDVHNLGAIIRNAYFFDVAGIIMP 121

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  S   +  + + + GA  H+P    +NL   +  M   GF     S   +  LE    
Sbjct: 122 KDNSAPINEKVYEISEGAAYHLPISIETNLNRVIDLMKDKGFWIYYASEKGETSLEDFKF 181

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           N   A+ILG E  G+R   ++ +     ++      +LNVS A+A+  Y 
Sbjct: 182 NSPTAIILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVSAASAIIGYA 231


>gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
 gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
          Length = 157

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++      ++    
Sbjct: 1   MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-T 249
             ++ +   +     F  I                 K    + G E  GL  +  E    
Sbjct: 61  YDSIDELFARFPGGEFYFITKFGQQYYDSFDFSDQKKDIFFVFGRETTGLPKELLEANKD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 151

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G+I R   A      +        +   L ++     EH+      
Sbjct: 1   MHIVLYQPQIPPNTGSIARLCAATGTPLHLIEPLGFSIDDRHLKRAGLDYWEHVRVKVWP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L    +   + +   +    P  +       AL+LG E  GL  +  E+   +  
Sbjct: 61  DWQAYLDS--AQPTRLVATCARFGTPHHEFSFASDDALVLGPEATGLPMRIIESIPQLVR 118

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + + G +++LN++NAA+V LY     
Sbjct: 119 IPIWGQVRSLNLANAASVLLYEAYRQ 144


>gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans]
 gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans]
          Length = 393

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 108/315 (34%), Gaps = 49/315 (15%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
              +K  + ++   A ++ +    K  ++ +        P   +++G ++V + L    R
Sbjct: 75  PNRQKGRAKQNVEEASVQHDQHKSK-FRNRSVTGSLRPNPLMEYVHGTNSVISVLQADKR 133

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123
             +  +    ++              ++      ++ +      +  +       L    
Sbjct: 134 DYYSRILYHASVTDEIRSLAKKRGAQLEMTDKHRLNILTNYAVHNNVVLETKPLQLPEIS 193

Query: 124 ----------------------------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                                             +   L + LD V+DPHN+GAI+RSA 
Sbjct: 194 QVGSCDPEGSTFAYDELFFDEASERRTSFIQKENKKFPLGLYLDEVSDPHNMGAIIRSAY 253

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D +I ++R     S  ++K++SGA E +P   +    D   K    G+  +     
Sbjct: 254 FLGVDFMIMSRRNCAPLSPTVSKTSSGATELLPIFTVDKPLDFFSKSQKEGWTFVSAGVS 313

Query: 216 SKKPLEQEIKND-----------KIALILGAEGKGLRPKTQETATSMAHLHM------PG 258
            +    +  K +            + L++G EG+G+R   Q  +  +  +          
Sbjct: 314 KQNKFAKNKKIEAQDLHGMLKELPVILVVGNEGEGVRTNLQMRSDFLVEIPQGRGAAGTR 373

Query: 259 IIKALNVSNAAAVAL 273
            + +LNVS A A+ L
Sbjct: 374 SVDSLNVSVATAILL 388


>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
 gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
 gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
 gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
          Length = 229

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 1/166 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T       + A R   L + ++ V+ PHN+ AI+R+A A     +            
Sbjct: 1   MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAVWPGSRMRT 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           + + +A            +                    SD+     +        +++G
Sbjct: 60  MASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS A+A+ LY  Q+  
Sbjct: 120 QEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYEAQHQR 165


>gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 304

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--L 81
           ++    ++       +    ++     + G   V  A+ +   ++  +  T+ AL R   
Sbjct: 42  SNPASARISRVAGLSRRNARAKHRRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHGE 101

Query: 82  DWDANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            WD  +     V     Q +D +    + +   +A E          A+  ++L+ VL  
Sbjct: 102 IWDEAVAVGLYVHVTTQQVMDAMSPDAQGLLAVVATEEVTGSEALTTALEGARLVAVLAQ 161

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
             DP N G I+R+A A   D ++  +      +  + +S +G+L H+P +    L DA+ 
Sbjct: 162 AQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVT 221

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +HS G   +         L +         A +LG E  GL  +    A ++  + + G
Sbjct: 222 ALHSAGLTVLAADGRGDLDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYG 281

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LNV+ AAAV LY +  
Sbjct: 282 KAESLNVAAAAAVCLYASAR 301


>gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05]
          Length = 240

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 2/228 (0%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           G HT+   L      I Q+    N    R+    +L     V     + + +   +  + 
Sbjct: 12  GFHTIEMLLKLSPENIKQIFIPANRNDARIQNLISLAEAASVSVEKKKNLSQH-PEATLK 70

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +    + + L        R++   +V+D+V DP N+GA +RSA A +  G+I  K +   
Sbjct: 71  KEEVFDLSDLKKYEETIQRDNPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKHHCSP 130

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ + ++G  E +    ++NL +A++     G+  +G S  +K    +   N  I  
Sbjct: 131 ITPLVRQVSAGGTEAMKIFIVTNLINAIKHFEKLGYLILGTSEHAKSMHTELDLNKPILT 190

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           I+G+E +G+R KT E  +++  L     + +LNVS AA V L+     
Sbjct: 191 IIGSEEEGMREKTLEKCSTVCTLSKNETLNSLNVSVAAGVILFEIARQ 238


>gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 184

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV-HAIWPGSRMRTMASAAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    SD      +        +++G E  G+  +
Sbjct: 69  SWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 151

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A   +  +            L ++      H+      +L
Sbjct: 4   LVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              LQ   + G + +G S        +    D   L+ G+E +GL  +  +   +   + 
Sbjct: 64  EHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIP 123

Query: 256 MPGI-IKALNVSNAAAVALYITQNHF 280
           +    +++LN+S +AAV L+  +   
Sbjct: 124 INKTHVRSLNLSVSAAVGLFEVRRQL 149


>gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 212

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 10/217 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A ++   +L      P       V  + +  +   +   QG+   
Sbjct: 3   EEAVQAGVT-IEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L +  + V DP N+G ++R+A A    G+I + + +   S    
Sbjct: 55  IQKEEVGLPDFRQGKYLFL--EDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P  R+  ++   +   S         S   K   +    +   L++G EG
Sbjct: 113 RSMQGSHFHLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEG 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 173 QGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 209


>gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 255

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 1/150 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +L V++ +    N  AI+RS  A     I+  +  +     +     +           
Sbjct: 67  FVLPVMEDIFQFRNAAAIVRSVEACGFHKIVAMESENEFNPNLRVTKGAETWV-EVEKMP 125

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL    +  +            +   L      + +AL+ G E +G+  +  + A    
Sbjct: 126 HNLESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEILDFADETV 185

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + M G  ++ NVS AAA+  Y  +    +
Sbjct: 186 AIPMYGFTRSFNVSVAAAICFYELKQKLIR 215


>gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a]
 gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a]
          Length = 299

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 91/285 (31%), Gaps = 42/285 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   ++ AL    R    +L +   L  +  D  LP
Sbjct: 13  DYVALTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLGAVPAD--LP 69

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       +  I G E     LA           D +  ++ ++V + +    N+G
Sbjct: 70  ADVPVYVAGADVLAAITGFEVHRGALASMCRRPPLAPADVLAAARRVLVCEDIVSHTNLG 129

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------------ 196
           AI RSA     D ++ + R +        + + G +  +PY R+                
Sbjct: 130 AIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLLRDAGFT 189

Query: 197 ---------------------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                                                  T    S             ++
Sbjct: 190 LLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAAGAPARV 249

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+LG EG GL   TQ  AT+ A + M   + +LNV+  AA+A Y
Sbjct: 250 ALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACY 294


>gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 243

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 97/253 (38%), Gaps = 18/253 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K     +     + G      A+ +       +L       R   D 
Sbjct: 6   SNKIYKHVKSLYKKKYR-YKYNEFVIEGYKLYEEAIKSNLNIKQIIL-------REGEDL 57

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                              + +    +G+      +          +  ++ L+ +NDP 
Sbjct: 58  -----IDGCVCFDSKTFNSLSEMNNPEGIICVVDFIEKKD----NYTDKILFLECINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + II +       +    +SA G+L  I     S       K + +
Sbjct: 109 NLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESIHVLENYKSNGF 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L  +SK  LE + K +K  LI+G E  G+  + ++ A     + M  + ++LN 
Sbjct: 169 KIYETSLEKNSKSILEIKDK-EKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLNA 227

Query: 266 SNAAAVALYITQN 278
           S AA+++++    
Sbjct: 228 SIAASLSMFYLSK 240


>gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
 gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
          Length = 155

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L     P N G + R+  A + +  +            L ++      ++P    ++  
Sbjct: 1   MLYQPQIPPNTGNVARTCAATAQELHLVGPLGFEISDRTLRRAGLDYWPYVPLTLHADWP 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                    G + + LS+    P           L+ G E  GL  +  + A ++  + M
Sbjct: 61  AFTGVQGRQGGRLVALSAHGITPYTAFRFQPDDWLLFGRESDGLPAEPLQRADAVLTIPM 120

Query: 257 P-------GIIKALNVSNAAAVALYITQNH 279
                   G +++LN+S A  V L+     
Sbjct: 121 RRSRHHPEGGVRSLNLSVAVGVVLFEALRQ 150


>gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64]
 gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64]
          Length = 237

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 26/248 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++   + ++     +   + G H V  AL             KN +  +  + 
Sbjct: 10  SNPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA------------KNLVIEIFEEE 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +         V    +  I         +AL   P         +    +++LD+V DP 
Sbjct: 54  SKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKS-------QIKNKVILLDNVQDPG 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A  F  D +I+   +   +  V A   +     +     +     +     +
Sbjct: 107 NVGTIIRNAACFGFDTVISNVNFYN-DKVVRATQGALFQVSLIKENNNEDLIKVLNNEGY 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                 L  DS K  E +I  +K+ LILG EG G+     +      ++ +    ++LNV
Sbjct: 166 FIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQKVYIPI--EFESLNV 223

Query: 266 SNAAAVAL 273
           + A+ + L
Sbjct: 224 AVASGIIL 231


>gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 227

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKVHAV--WPHEMRTLSHTSAGARNWVDVE 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +         +   SD+     +       A+ILG+E  G   K ++ A 
Sbjct: 74  THDNIEDAIAELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa]
 gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa]
          Length = 269

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  L +V++ + D  N+ A+ RSA A     +      S          + GA + +  
Sbjct: 69  RSYSLCLVVEGLTDFGNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLDI 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248
               +  D  Q + S G++              ++  +   A+++G E +G+  +  E +
Sbjct: 129 ELWDSAKDCFQVLKSRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALELS 188

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 189 DLHCSIPMKGMVDSFNVSVAAGILMHHA 216


>gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 223

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 7/217 (3%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----- 127
                L  LD          +  V    +D+++    +HQG+  +         D     
Sbjct: 5   IWVKNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFDELLND 64

Query: 128 -AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALE 185
              +   L++VLD ++DP+N GAI+RS    + DGII   K+     S VL  S+  A +
Sbjct: 65  LNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFD 124

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  +         ++  +      + +   + +    +K  +I+G E KG+     
Sbjct: 125 IKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTKTQFANKSVVIIGNEQKGVSELLT 184

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +    ++     I + N S A ++  +   N+  K
Sbjct: 185 KNSDFNIYVPSNKNIDSFNSSVACSIICFWIANYLNK 221


>gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 304

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 90/242 (37%), Gaps = 5/242 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY+ +     + R               +  AL    R I     +   L  L    + 
Sbjct: 46  ADYRALTDVELRKRVEPAHGIFIAESALVIQRALAAGYRMI-SAFVSDRWLDELADQLS- 103

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV    P+ +  + G       LA      LS   + +R S+ ++VL+ VN+  N+
Sbjct: 104 SVEAPVYVGAPEVLQSVTGFHVHRGALAAFARRPLSSVEEILRTSRRIVVLEDVNNHTNL 163

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---HIPYIRISNLTDALQKMHS 204
           GA+ R A A   DG++ + R +        + + GA+    +  +    +    +     
Sbjct: 164 GAVFRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDTWPDELTGVSAAQF 223

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    + +     +    ++IAL+LGAEG GL  +  + A     + M   + +LN
Sbjct: 224 RLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRVRIPMHAGVDSLN 283

Query: 265 VS 266
           V+
Sbjct: 284 VA 285


>gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 265

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 94/236 (39%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
               + G   V+A     +  + ++    +A  R           PV+ V  + +  +  
Sbjct: 17  GEFLVEGPQAVAA--GLAAGALREIFVGSSAAGRYGELVGTA-GIPVRVVSDEAVASLSE 73

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  +AL         +  +   +L+ +     DP N G I+RSA A   D ++   
Sbjct: 74  TVTPQGVVALA--EQPRHRIADLDTPRLVAICVDTQDPGNAGTIVRSADAAGADAVVFAG 131

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-- 224
                      ++++G++ H+P +    + DA++++   G + +  +  + + ++     
Sbjct: 132 ASVDPFGGKAVRASAGSIFHLPVVTDIGVADAVRQIREHGCRIVATTPSAPRDIDTAQDA 191

Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +     + G E +GL   T  +A ++  + + G  ++LN++ A A+ LY +  
Sbjct: 192 GELDTPTGWLFGNEARGLPRATVVSADAVLRVPVYGQAESLNLAVATAICLYASAR 247


>gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
 gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
          Length = 161

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MFHVVLLEPEIPPNTGNIIRLCANTGAILHLVQPLGFELDDRRLRRAGLDY--HEWAKVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            + +       +   Q    S+  ++P ++   +   AL+ G E +GL  +  E   +  
Sbjct: 59  VHPSLEHFLDKTQPRQLWACSTRGQQPYDKANFHPGDALLFGPETRGLPRELLETLLSRQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M    ++LN+SNA AV LY     
Sbjct: 119 VLRIPMEPTSRSLNLSNAVAVVLYEAWRQ 147


>gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis]
 gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis]
          Length = 334

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R+  + +V++ ++D  N+ A  RSA A     +      S          + GA + + 
Sbjct: 133 NRSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDSSKRYRDNRHVSMGAEKWLD 192

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247
                +  +  + + S G++              ++  +   A+++G E +G+  +  E 
Sbjct: 193 IELWDSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWSCPTAIVVGNENRGISDEALEL 252

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + M G++ + NVS AA + ++  
Sbjct: 253 SDLHCSIPMKGMVDSFNVSVAAGILMHQA 281


>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 239

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 23/256 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +    K ++  + +   L G + +S A       +  L ++K+ + +   
Sbjct: 5   SKQNPLIKEYKKLQNK-KYRKEKQQFLLEGFNLISEA--KKYTNVITLESSKDLIYKDSI 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                       V  + I  +   ++    + +         L         ++L++V+D
Sbjct: 62  -----------RVDYEIIKHLSETKSPQSIIGVA------SFLKPTNKINKTVILNNVSD 104

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ILRSA+AF  D +I       +   + +   +           +          
Sbjct: 105 PGNIGTILRSALAFEFDTVIIENIDIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKA 164

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                   L   + K L +    N+KIA+++G E  G+     + A+   ++ +    ++
Sbjct: 165 QNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FES 222

Query: 263 LNVSNAAAVALYITQN 278
           LNV++A A+ L   +N
Sbjct: 223 LNVASALAIILNKIRN 238


>gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 230

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 R   L +++D V+ PHNI AI+R+  A     +      + +  A      S  
Sbjct: 10  CDTLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRARMAAGTAMGSQR 69

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +     S       +          L SD      Q       AL+LG E  G+  +
Sbjct: 70  WVQVHKRDESTDVIRELQGQGVQVLAAHL-SDDAIEYRQVDYTRPTALLLGTEKFGVSDE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     + M G++++ NVS AAA+ L       
Sbjct: 129 VASAVDQNVTIPMMGMVESFNVSVAAAIILSEACEQR 165


>gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 302

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 99/293 (33%), Gaps = 43/293 (14%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H    +   + G  +V  A+      +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYAIDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117
           K+A              R      L     V  V    + KI           +     +
Sbjct: 58  KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESSIMQKISADSQGIVAVANSKSLDD 117

Query: 118 TAPLLSPTLDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                   L      +         +     V DP N GAI+R A    CD ++      
Sbjct: 118 IYFSEFKNLQQSAQIKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177

Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              ++ L +S +G+L H           +   +     +     +G   I      K  +
Sbjct: 178 SRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAKSNIRVIAADIYGTDKIKPVPFPKILV 237

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E+ +  +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205]
          Length = 157

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + RS  A   +  +        +   L ++       +   R +N 
Sbjct: 4   VVLFQPEIPPNTGNVARSCAASCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERHANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+K    G + + LS  + +P  +        L+ G E  GL  +  E       + 
Sbjct: 64  EQFLEKRRQRGGRLLALSRHASEPYHRIQYRADDWLLFGRESSGLPGELLEHVDQRLLIP 123

Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280
           MP      G +++LN++ +  V L+      
Sbjct: 124 MPGSVDQGGGVRSLNLATSVGVVLFEALRQL 154


>gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 273

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 22/253 (8%)

Query: 45  QPENLFLYGV----HTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPP 98
           +   ++  G       V +        +  ++     L     D    LP    V  V  
Sbjct: 25  RGGLVYAEGPLICGRLVES-----RFPLRSVIGFGGRLESFLADYGEVLPASVGVYEVTR 79

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + ++ G +     +A+   P      +    ++ L++L+ V D  NIG+I R+A    
Sbjct: 80  PLLAEVAGYDMHRGLIAVAERPQPLSVAEVTDGARTLVILEGVGDHENIGSIFRNAAGMD 139

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG++     +        + + G    +P+  +       Q+       T         
Sbjct: 140 VDGVLFGAATADPLYRRSVRVSMGHALRLPFAHLDGTATTWQRSLDELRLTGWRLLSLTP 199

Query: 219 PLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               E              DK+AL++G EG GL           A + M     +LNV+ 
Sbjct: 200 DDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATHVRARIPMAPGTDSLNVAT 259

Query: 268 AAAVALYITQNHF 280
           +AA+A Y  Q   
Sbjct: 260 SAAIAFYERQRSL 272


>gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42]
          Length = 176

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 74/157 (47%), Gaps = 1/157 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +    +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++
Sbjct: 21  SESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSI 80

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                I  ++  + +  + S  F  +    +++   ++     K+AL++G E  G+  + 
Sbjct: 81  F-DMNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEEL 139

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  +  + + G  ++LN + ++A+ +Y  + +  
Sbjct: 140 VSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI 176


>gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
 gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
          Length = 157

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++      ++    
Sbjct: 1   MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-T 249
             ++ +   +     F  I                +K    + G E  GL  +  E    
Sbjct: 61  YDSIDELFARFPGGEFYFITKFGQQYYDSFDFSDQEKDIFFVFGRETTGLPKELLEANKD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|325193446|emb|CCA27771.1| rRNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 220

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 51/243 (20%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR----------LDWDANLPHPFPVKTVPPQT 100
           LYG H+V  AL    R ++ L   + +  +                  H   ++ +   T
Sbjct: 14  LYGYHSVLQALEVVHRDVYALYIKEESDRKQEGKAKQFTNKILHLAKAHNIAIRPLDKWT 73

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++KI   +  HQG+           LDA              +     A   +    +  
Sbjct: 74  LNKIS-NDKPHQGVI----------LDASPLQIPFSEPVAPRNDEVSRASAGALEILAAA 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +++  +      A+ +  +                                 S    P+
Sbjct: 123 NMLSQTKCLNEFLALSSALS-------------------------WRTVGASCSKHATPI 157

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275
                     L++G E +GLR    +    +  +          + +LNVS A+ + LY 
Sbjct: 158 TGLSSKCPTILVMGNEQRGLRKNVIKCCEQLVCIPGNSKQEVTNVDSLNVSVASGILLYE 217

Query: 276 TQN 278
              
Sbjct: 218 LLK 220


>gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
 gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 92/256 (35%), Gaps = 18/256 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K ++ ++       G   V+  +     +   +LA  + +        + 
Sbjct: 6   KVKYIHSLEMK-KYRNELNAFVAEGNKLVADMMFA--FECELILAKPSWM-------AMQ 55

Query: 89  HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P K +     D I         Q +            +A  ++ L++ LD + DP N
Sbjct: 56  GNIPAKELLEAEGDDIRKASFLKNPQDVLAVFKRPDWSLDEADPSTSLVLALDGIQDPGN 115

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I+ +   +   S    ++  GAL H+             K  +  
Sbjct: 116 LGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVKVHYTELE--DYLKAQAAR 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKA 262
              +  +    + +  +  +    +++G EG G+RP+ ++      ++          ++
Sbjct: 174 QIPLFGTFLDGENMYTKELSANGIIVMGNEGNGIRPQIEKLINQKLYIPSFPPERETSES 233

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ A AV     + 
Sbjct: 234 LNVAIATAVICAEFRR 249


>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
 gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
          Length = 232

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     I      +     +++ +A         
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEI-HAVWPTTRMKTLVSSAAGSNSWVQVK 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +             S+               ++LG E  G+ P+    A 
Sbjct: 75  THKTIQDAVAKMKAKGMQILATNLSEKAVDFRAIDYTRPTCILLGQEKTGITPEALALAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           S   + M G++++LNVS A+A+ LY  Q   
Sbjct: 135 SDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 206

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 87  YTRPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 142


>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
          Length = 261

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 95/255 (37%), Gaps = 13/255 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           KK+    Q+++           G   +   L         L+ T + L  ++    + H 
Sbjct: 14  KKLIVALQQTKVRRAEGLFVAEGPKLIGELLAT--FPCRLLVTTASFLPLVEGLGQIQH- 70

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +P +     +      + +         P+   +    LL+  D+V DP N+G+I
Sbjct: 71  --VVLLPEEYDFSSLSTLRTPRPMIALLELPTPPSASTITAPSLLL--DNVQDPGNVGSI 126

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-- 208
           LR+A  F C  + TT+  +   S  + ++  GAL  +    I+++    Q          
Sbjct: 127 LRTADWFGCRSVFTTEGTADPFSPKVVQATMGALARVKVTPITDVHTLGQAHRDGVAILG 186

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALN 264
           T     D        + +    LI+G EG+G+ P   +  T    +         +++LN
Sbjct: 187 TFLEGEDILAHHSTPLFSSPYLLIMGNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESLN 246

Query: 265 VSNAAAVALYITQNH 279
           V+ A A+ L     H
Sbjct: 247 VAAATAIVLACLHRH 261


>gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 314

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101
                    G   V  AL  P   + +L  T  AL R    A        PV       +
Sbjct: 37  EATGRFLAEGPQAVREALARPGT-VLELFGTPAALDRYRDLAAQAAAADLPVSEATDAAL 95

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +    A    +A+     L       R  +L+ VL  + DP N G +LR+A A     
Sbjct: 96  AGLAETVAPQGLIAVCQHLDLPLATALARAPRLVTVLADIRDPGNAGTVLRTADAAGAQA 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG----FQTIGLSSDSK 217
           ++         +  + ++++G+L H+  +R  +    +  + + G      T   + D  
Sbjct: 156 VVFAGTAVDPYNGKVVRASAGSLFHVDVVRAPDPLQVIADLRTAGLAVLATTGYGADDLD 215

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +        A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY + 
Sbjct: 216 DLADAGRLAAPTAWVFGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYASA 275

Query: 278 N-HF 280
               
Sbjct: 276 RAQR 279


>gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 280

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 12/249 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  +     +SRH              +  AL    R    LLA +         A L
Sbjct: 18  ADYVSLTDVALRSRHEPAKGLYIAESSTVLGRALRAGHRPRSVLLAPRWVPDLERMLAEL 77

Query: 88  PHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVL 138
           P      PV       ++ I G       LA    P L P  D          ++ + VL
Sbjct: 78  PDDGATVPVYVADEPVLEAITGFHVHRGALAAMHRPPLPPVADVLAAARGGAGARRVAVL 137

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + V D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI    D 
Sbjct: 138 EDVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPDG 197

Query: 199 LQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           ++++ S GF T                    +++AL+LGAEG GL+P T   +  +  + 
Sbjct: 198 IEELRSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVVRIP 257

Query: 256 MPGIIKALN 264
           M G + +LN
Sbjct: 258 MAGGVDSLN 266


>gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1]
 gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1]
          Length = 153

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I R+  A      +            L ++      ++     
Sbjct: 1   MPAVVLVHPQIPPNTGNIARTCAATQTPLHLIEPLGFELSDRYLKRAGLDYWPYVTLYCH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    L+  H  G       +  +         +   L+ G+E  G+      T     
Sbjct: 61  PDWPTFLKTAHRHGRLIAFEPAAQQIYW-DFTFAESDWLVFGSEPAGIPADVLATCDVFL 119

Query: 253 HLHM-PGIIKALNVSNAAAVALYITQNHF 280
            + M    +++LN+S + A+AL       
Sbjct: 120 KIPMWQPAVRSLNLSVSVAIALMEVYRQL 148


>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 250

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 15/259 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   +     + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSLYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L            +   +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEELSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +       
Sbjct: 115 GNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNIAKL 174

Query: 205 WGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +    +         +        L+ G E  G+      +      +     I++L
Sbjct: 175 QQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESL 231

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AA + L+       +
Sbjct: 232 NVAQAATIYLFEGLRQRLR 250


>gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
 gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
          Length = 154

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +            L ++      ++P    S++
Sbjct: 4   VVLIQPQIPPNTGNVARTCAATRTELHLVGPLGFEISDRDLRRAGLDYWPYVPLKIHSSI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                    WG + IG S   K+   Q        L+ G E  GL P+          + 
Sbjct: 64  EAFKHYHQYWGGRWIGFSKRGKQNYAQFQYQADDWLLFGPETTGLSPELLSACDVTTSIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + A+ L       
Sbjct: 124 MREPGVRSLNLSVSVAIGLLEAGRQL 149


>gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 234

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 21/233 (9%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +    +   +YG H +  A  N +  +  +  +                 P   +    +
Sbjct: 21  YRDLYQQFLVYGDHLIEQAQKNNA--VVAIFTSNEEK-------------PGTFIESSLM 65

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   + V   +AL      +  L        ++VLD + DP N+G ++RSA AF  + 
Sbjct: 66  KELSQTKTVFDQMALCKPISENNLLSDK-----ILVLDDIQDPANLGVLMRSASAFGFNQ 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +  +   +        +S+ GAL  +   R S  +   +               S   ++
Sbjct: 121 VFASFHSADFYHEKTIRSSQGALFSLSLKRGSTKSFLEEVKEQNYSIFSAFPQKSNITIK 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              K+ K  L+LG EG+G+  +T+  +    ++     +++LNV+ A ++ +Y
Sbjct: 181 DAKKHPKKVLVLGNEGQGISSETEGLSDYFVNI-FTQNVESLNVAVAGSILMY 232


>gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 123

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            D + +++G+EGKG+    +E    +  + M   +++LN S AA   L       
Sbjct: 65  KDPVVIVIGSEGKGISRLVRENCDVIVSIPMTAWVESLNASVAAGAVLSEFARRR 119


>gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           MP688]
          Length = 164

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
                 +       +                +    + G E +GL  + ++         
Sbjct: 74  EACCTALAGRRMFALTTKG--STRHSTIAFQEGDVFVFGPETRGLPEEIRDQFAPDHRVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157


>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
          Length = 413

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 49/312 (15%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 88  LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAAPQVFFFSRLEY 147

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL 135
           +  L  +         VK    +    +V  + +       + + +  P      +  LL
Sbjct: 148 IKELPVEKLKGVRLVKVKFEDIKDWSDLVTPQGIMGIFAKPDYSKMTYPESQRHHSLPLL 207

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ DP N+G +LRSA    C  ++ TK    +    + ++  GA   +P I     
Sbjct: 208 LICDNLRDPGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPVINNLEW 267

Query: 196 TDALQKMHSWGFQTI-------------------------------------------GL 212
               + +       +                                            L
Sbjct: 268 EAVPEHLPPNTRVYVADNCGLYAQAHASDKAGVCDPRFLKFHKSKEEVEELENGAGKGWL 327

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNA 268
                +  + +      A+++G E  G+  ++   A         + +   + +LN + A
Sbjct: 328 PELEVQSYDLDWTEAPAAVVIGGETHGVSLESLWLAERTGGKRLLIPVVPGVDSLNSAMA 387

Query: 269 AAVALYITQNHF 280
           A++ L+  +   
Sbjct: 388 ASILLFEGKRQL 399


>gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073]
 gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 153-1]
          Length = 345

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
          Length = 370

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 276 TQNH 279
               
Sbjct: 364 WWRQ 367


>gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
          Length = 301

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 15/284 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
               E++ S +     + RR   +         +     +   + LYG++ V A      
Sbjct: 23  SGPGERVPSERAPAGERPRRPSAEAPASPGAPPRPARREE---VRLYGLNAVQAVFERRP 79

Query: 66  RKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           + I +L   +  +  L       + +    + V  + +D++    + H+G+  +      
Sbjct: 80  QAIRKLYLLQARVHALRPLLAWCVQNRVGYRVVENEDLDRLAA-SSHHEGVVADVLRSDP 138

Query: 124 PTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             L+            L + LD V +PHN GAILRSA  F    ++  +R + + S   A
Sbjct: 139 LPLEDWLASLAPGAPALALWLDGVGNPHNFGAILRSAAHFGAAVLLP-ERSTLALSGAAA 197

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + A G  E +  +R+     AL ++H+ GF +        + L       ++  ++GAEG
Sbjct: 198 RVAEGGAEGVALVRLPGNDAALARLHAAGFASAATVVRDGEDLFAMQPQPRLVYVMGAEG 257

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           +G+             +   G +++LNV+ A AV L  +     
Sbjct: 258 EGMDAGLAGACQHRVSIAGTGAVESLNVAAATAVFLAHWAAARR 301


>gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 196

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+++++DPHN+ AILRS  AF    +      +   +     S S        
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLLYTDTAFPALGKKSSGSAKKWVETV 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 + A               +++  PL++     K A+ILG E  G+         
Sbjct: 80  RHKDAASLAAALKGQGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVDEDLAPHVD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G++++LNVS AAAV LY      
Sbjct: 140 GALYIPMMGMVQSLNVSVAAAVILYEGFRQL 170


>gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 304

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 98/261 (37%), Gaps = 13/261 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            L+D   ++L     DY  M     +S+  ++         + ++ ALN+  +    L++
Sbjct: 36  HLEDLTDSRLT----DYLHMTDVALRSKTETELGLFMAESKNVITRALNSGYQPRSFLMS 91

Query: 74  TKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
            K   +  +            PV     + ++ + G       +A      L    D ++
Sbjct: 92  PKWVESMREVLERFGPDAGEVPVFIASEEMLETLTGFHLHRGAMAAMHRLPLPTAADLLK 151

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ + VL+ + D  N+GAI RSA A   D ++ T   +        + + G +  +P+ 
Sbjct: 152 TARRIAVLEDIVDHTNVGAIFRSAAAIGVDAVLVTPSCADPLFRRSVRVSMGTVFQVPWT 211

Query: 191 RISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           R+    +                    ++ D            ++A +LG+EG GL+ +T
Sbjct: 212 RLETWPEPQLFREHGFEVAALALGENTITLDDYTAELATDPARRVAWVLGSEGYGLKERT 271

Query: 245 QETATSMAHLHMPGIIKALNV 265
             T      + M   + +LNV
Sbjct: 272 LRTVDKTVMIPMQHGVDSLNV 292


>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
 gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
          Length = 289

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 129/253 (50%), Gaps = 12/253 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHP 90
           + +S   +  +   +YG H V AAL+N  R +  +  T  A            +      
Sbjct: 23  STRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGAGDAMAVFLSELPEPRRRSL 82

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDP 144
              + V    +D  +   AVHQGL L+  PL  P L         R   +L+VLD V DP
Sbjct: 83  PAPQPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLIVAWEGRTDIVLVVLDQVTDP 142

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA+LRSA AF    ++   R+ P  + VLAK ASGAL+ +P +R+ NL  AL+ +  
Sbjct: 143 HNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVVNLARALRDLQE 202

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF   GL+ D    L +     + A++LGAEG GLR  T+ET  ++A L     I +LN
Sbjct: 203 NGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLTRETCDALARLPTCPPIGSLN 262

Query: 265 VSNAAAVALYITQ 277
           VS AAAVALY  +
Sbjct: 263 VSAAAAVALYQAR 275


>gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 229

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 1/161 (0%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +   R   L ++ D V  PHN+ AI+RS  AF+ + +               ++ 
Sbjct: 7   QRMHDILRKRQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNV-VWPYDDYQTFRGRAM 65

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                                             D   P          A+++GAE  G+
Sbjct: 66  GSQQYVNVKTHKDVSQAIQGFKQQGYQIVAAHFCDQAVPHYDIDYTKPTAIVMGAEKNGV 125

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             K  +       + M G++++LNVS AAA+ L    +   
Sbjct: 126 SAKAMDLVDHSIIVPMEGMVQSLNVSVAAALILSEAMHQRK 166


>gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 1/157 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             + A R   L + ++ V+ PHN+ AI+R+A A     +            + + +A   
Sbjct: 10  CEMLARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV-HAVWPGARMRTMASTAAGSN 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    +                    S       +        +++G E  G+  +
Sbjct: 69  SWVSVKTHQTIGEAVSHLKGRGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
 gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
          Length = 242

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 12/248 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
            ++  +QK ++        + G H V        +           L       + P P+
Sbjct: 5   DIKKLHQK-KYRQSFGQFLVEGEHLVLELEKAAKQVPH---WRNAQLYVTSAHEHWPSPW 60

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P   +  + + ++         LA    PL   T     + +  + L  V DP N+G IL
Sbjct: 61  PKHVISDRQMAQLSDTRTPQGILA--VVPLPPATRGESASREKALYLHEVQDPGNLGTIL 118

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F     + +       +  + +++ GA+ H+P      L    Q+        IG
Sbjct: 119 RTLAWFGGFRCLLSPGSVDPFNPKVVRASMGAIFHVPLETEVALDTLGQRYARIACLDIG 178

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAA 270
             S +K          +   + G E +G+  +   E       +     I++LN+++A  
Sbjct: 179 GDSITKPE-----FQAQDCYLFGNEARGVPKQALTELGAHAYTIPGAAAIESLNLASAVN 233

Query: 271 VALYITQN 278
           +A+Y    
Sbjct: 234 MAVYELNR 241


>gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont]
          Length = 239

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + ++ V+ PHN+ A++R+A A     +      S     +++ SA        
Sbjct: 1   MRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV-HAVWPSVRMRTMVSASAGSNSWVKV 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                    SD      +        +++G E  G+  +    A
Sbjct: 60  KTHRHIADAVRHLKDRGMQVLATHLSDKAVDFREIDYTKPTCILMGKEKTGITAEALALA 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + + G++++LNVS A+A+ LY  Q   
Sbjct: 120 DRDIIIPIVGMVQSLNVSVASALILYEAQRQR 151


>gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis
           familiaris]
          Length = 423

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 93/320 (29%), Gaps = 59/320 (18%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           +  L  D        +  V  + I            + +   P    +  P         
Sbjct: 152 IKELPID--KLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHLLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK         + ++A GA   +P I   
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAAMGAHFQVPIINNL 269

Query: 194 NLTDALQKMHSWGFQTI------------------------------------------- 210
           +       + +     +                                           
Sbjct: 270 DWETLPNYLPTDTRVYVADNCGLYAQAQMSDKASDHGWVCDRRLSKLHKYEEEEEEEDLE 329

Query: 211 ------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGII 260
                  L     +  + +      A+++G E  G+  ++ + A         + +   +
Sbjct: 330 PGASKAWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGV 389

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN + AA++ L+  +   
Sbjct: 390 DSLNSAMAASILLFEGRRQL 409


>gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
 gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
          Length = 287

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 84/282 (29%), Gaps = 26/282 (9%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +     ++   +  +++ Q+        ++     + GV  +S A+ +       L   +
Sbjct: 8   RTPAARRITSRNARFQQWQALLGNRNKRTRAGEFLVXGVRPISLAVEHGWPVRTLLYDGQ 67

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQ 133
             L++   +             P  + ++ G++       +      +  LD +      
Sbjct: 68  RELSKWARELLRTVRTEQIAXAPDLLXEL-GEKNEAPPEVVAVVEXPADDLDRIPVREDF 126

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIP 188
           L ++ D    P NIG+I+RSA A    G+I     +        +S++G+L       +P
Sbjct: 127 LGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVP 186

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                      ++        +G        +          L++G E  GL    +   
Sbjct: 187 SPGEVXDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246

Query: 249 TSMAHLHMPG---------IIKALNVSNAAAVALYITQNHFA 281
                +   G                    A+ LY       
Sbjct: 247 DYTVSIPXAGSASSLNAANAA--------TAI-LYEAVRQRI 279


>gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101]
          Length = 160

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +            L ++       +   R ++ 
Sbjct: 4   LVLFQPEIPPNTGNVARTCAATCTELHLIEPLGFEISDRTLKRAGLDYWPWVNLHRHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    G + + LS    +P  +        L+ G E  GL  +    A +   + 
Sbjct: 64  AAFRLEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPLEVVADADACLAIP 123

Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280
           MP      G +++LN++ AA V L+      
Sbjct: 124 MPGSVDHGGGVRSLNLATAAGVVLFEALRQL 154


>gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.]
          Length = 154

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLHIALYEPEIPPNTGNIIRLCANTGAQLHLIEPLAFVLDDKRLRRAGLDY--HEFAPVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250
            +   A  +           ++ +K+   Q    D+  L+ G E +GL     +      
Sbjct: 59  VHADFAAFQQWQQNRPLFACTTKAKQFHHQATFIDESILLFGPESRGLPATLLDNLPDRQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ LY      
Sbjct: 119 KIRIPMYPESRSLNLSNATAIILYEAWRQL 148


>gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL+VLD + DPHN+GAILRS  AF    +I   R SP     L K+A G  E IP 
Sbjct: 58  PTHGLLVVLDQITDPHNVGAILRSCAAFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQ 117

Query: 190 IRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           ++++N+ D L  +   G   IG    +               + L+LGAEG GLRP+  E
Sbjct: 118 VQVTNIADTLIALQEAGRHVIGLAGEAEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAE 177

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +S+A + M    ++LNVSNAAA+ALY    
Sbjct: 178 HCSSLARIPMGPKAESLNVSNAAAIALYEASR 209


>gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 180

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L++VLD+V + +NIGA +R A AF+ + +I     + S+  +   S + A      
Sbjct: 26  PKIPLIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKKMKKASRNEAKWVCVE 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S        +                   +     K  L+LG E KG+     + + 
Sbjct: 86  YSDSTTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSL 145

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              H+ M G+  +LNVS A A+ L    N   K
Sbjct: 146 QQIHIPMFGMGNSLNVSTAGAIVLAECANQIRK 178


>gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
          Length = 210

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFNGRPRTFNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +       K   +      L  D+K   E +      A +LGAE  GL  + Q+ 
Sbjct: 76  HDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECD-FTGPTAFVLGAEKWGLTDQAQDL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 331

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 16/292 (5%)

Query: 2   NLISKKKSEKIFSL--KDSHYAKLRRNHRDY-------KKMQSFNQKSRHTSQPENLFLY 52
              S ++S++       D   A  +R            K +    Q  R   +     +Y
Sbjct: 39  KKSSSRRSDRNNERLTDDPWKAISQRRDPVNSHSGISGKSLLDPEQIRRQRLEETR--IY 96

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG---K 107
           G H   A   +    I +    ++              +      V  + + K  G    
Sbjct: 97  GEHACQAMFKHRPEAIVRAWFVQSITPHFRDALKWMAANRKAYHVVNEEELIKASGTEHH 156

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             V   +   T       L        ++ ++ + +PHN+GAI+RS   F   GII    
Sbjct: 157 GGVCFLIKKRTGLDAEAYLAQSNKIDCVLAVEDIGNPHNLGAIMRSCAHFGVQGIILHDT 216

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +    + +  +A GA         +  T   +  H+        +      + + +  +
Sbjct: 217 AAMESGSAVRTAAGGAEYIKGIQSDNFATTLNKFRHAGYIIVTTSNHKDNIDIAKAVLPE 276

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           KI L+L  E  GL     +       +   G +K+LNVS AA + L      
Sbjct: 277 KIVLLLEQESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGIILAKWWQQ 328


>gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 226

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 1/158 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +  +L V++ V    N  AI+RS  A     ++  +     E  +     +   
Sbjct: 27  HFSKESSDFVLPVVEDVYQFRNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTKGADTW 86

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +  +  +  +    K   +    + L  ++K   E E+  + IAL+ G E +G+  + 
Sbjct: 87  VEVEKLPRNMESFQNIKDRRYKIVAVSLEKNAKMLPEYEV-TEPIALVFGTEMEGVSQEI 145

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + A     + M G  ++ NVS AA++ +Y  +    K
Sbjct: 146 LDFADETLAIPMYGFTRSFNVSVAASICMYELKQKLIK 183


>gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 60

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G EGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 5   GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 52


>gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132]
 gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           ND132]
          Length = 196

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 59/151 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D++ DPHN+ A+LRS  AF   G+      S      L  S S        
Sbjct: 20  RQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLYYTDSQWPDLALKSSGSATKWVERT 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +       +             SDS +P+         A+IL  E +G  P       
Sbjct: 80  EHVDAAEMVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIILSNEHRGTSPDLAALVP 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G++++ NVS AAA+ LY      
Sbjct: 140 DEIYIPMQGMVQSFNVSVAAAIILYQAFTQR 170


>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 53/321 (16%)

Query: 8   KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57
           +  +I +  + +  + + R+   Y+         R T Q          E   +YGV  V
Sbjct: 251 RWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 310

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVPPQTIDKI 104
            AAL+   R+ + L   +      +                       +K      ++ +
Sbjct: 311 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-M 369

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L+ +PL    +              L + LD V DP N+GAI+RSA  F
Sbjct: 370 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFF 429

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   + S   SAV++K+++G+LE +      N+   L+     G++ +G S   K
Sbjct: 430 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 489

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259
                E+       L+LG EG GLRP  + + T +  +  +MP                 
Sbjct: 490 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFR 549

Query: 260 ----IKALNVSNAAAVALYIT 276
               +++LNVS AA + L+  
Sbjct: 550 SFLAVESLNVSVAAGLFLHHL 570


>gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
 gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
          Length = 157

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++      ++    
Sbjct: 1   MPLHVVLYQPEIPANTGNIARTCAATDTSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249
             +L +   +     F  I                +K    + G E  GL  +  E    
Sbjct: 61  YDSLDELFARFPEGEFYFITKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELLEANMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana]
 gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana]
 gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
           thaliana]
          Length = 589

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 53/321 (16%)

Query: 8   KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57
           +  +I +  + +  + + R+   Y+         R T Q          E   +YGV  V
Sbjct: 263 RWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 322

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVPPQTIDKI 104
            AAL+   R+ + L   +      +                       +K      ++ +
Sbjct: 323 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-M 381

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L+ +PL    +              L + LD V DP N+GAI+RSA  F
Sbjct: 382 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFF 441

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   + S   SAV++K+++G+LE +      N+   L+     G++ +G S   K
Sbjct: 442 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 501

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259
                E+       L+LG EG GLRP  + + T +  +  +MP                 
Sbjct: 502 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFR 561

Query: 260 ----IKALNVSNAAAVALYIT 276
               +++LNVS AA + L+  
Sbjct: 562 SFLAVESLNVSVAAGLFLHHL 582


>gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 227

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I     +      +   SA         
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKIHAV--WPNEMRTLSHTSAGARNWVDVE 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S      +         +   SDS     Q       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIEEAISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLAD 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 268

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTV 96
           +      +       G   + A   +  +++  LL       +L      LP   P+   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFTRDAPQRVVSLLIDPKRREKLADVFAGLPEFTPIYLA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
               +D I G       LA+   P        L ++    +++VL  + +  N+G I R+
Sbjct: 82  EQGVLDAIAGFHLHRGILAVGRKPPAVAARDLLASLPARAMVLVLCGIANHDNMGGIYRN 141

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  D I+              + + GA+  +P  R+S        + + GF+ + LS
Sbjct: 142 AAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPTARLSRDESIADLLDATGFEGLALS 201

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + + L       + A++LG EG GL P     A     + M     +LNV+  + + L
Sbjct: 202 PSADEILATLKPAARTAVLLGTEGPGLSPDVMARA-RRIGIPMANSFDSLNVATTSGIVL 260

Query: 274 YITQ 277
           +  +
Sbjct: 261 HHLR 264


>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
 gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
          Length = 228

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++L+ V+ P+N+ A++R+A A     +            +   SA         
Sbjct: 16  RQPDLTLLLEQVHKPNNVSAVIRTADAAGVHKV-HAVWPDEKMRTLSHTSAGARNWVEVE 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +                    S++             A+ILG E  G+       A 
Sbjct: 75  THDTVADAVRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIILGGEKHGITQDALTEAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+A+ L+  Q   
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILFEAQRQR 165


>gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 161

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A      +            L ++      ++      ++
Sbjct: 4   IVLVNPEIPPNTGNIARTCAATETPLHLVMPLGFELSDRYLKRAGLDYWPYVDLHIHQSI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D  Q   + G + IG S+ +     Q        L+ G E KGL  +  E    +  + 
Sbjct: 64  EDFWQHAQAKGGKLIGYSAKATAVYTQLTYRRDDWLLFGCESKGLSAEVLEQCDVVTTIP 123

Query: 256 MPGI--IKALNVSNAAAVALYITQNH 279
           M     +++LN+S  AAV L+     
Sbjct: 124 MSDRRHVRSLNLSVCAAVGLFEAIRQ 149


>gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 278

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 106/275 (38%), Gaps = 22/275 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQP----ENLFLY--GVHTVSAALNNPSRKIFQLLATKN--A 77
           +    K      ++           E+ +L     H++ AA+ +    + +L+       
Sbjct: 3   DKSRKKSKTKLQRRPAARRPEPAVEESPWLELKNPHSIRAAMTHRPEDVKELVFLNEPAG 62

Query: 78  LARLDWDANLPHPFPVKTV-------PPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
           L     +       PV+ +             K   KE          AP     LD   
Sbjct: 63  LWNRLIEMAEAAKIPVRHLGQTDEQQERARKQKKGKKEERKGHSYALVAPRQPQKLDDLL 122

Query: 128 ----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     + + LD + DPHN+GAI RSA  F   GII TK  S   +A +  +A+G 
Sbjct: 123 QLPVPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGG 182

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +E IP+   +NL  AL+     G   +G S  ++K + +  +     +++G E KGLR  
Sbjct: 183 VEDIPFAVETNLNRALKLSRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGNEQKGLRRL 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E    +  +   G   +LNVS AA + L   + 
Sbjct: 243 VLEHCDQICQVPPLGETSSLNVSVAAGILLAALRR 277


>gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 158

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L++G E  G+       A     + M    ++LNV+ +AA+ L       
Sbjct: 98  CAYQPGDVLLVGRESAGVPDDVFAAADITVRIPMRPGARSLNVAVSAAIVLSEALRQL 155


>gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
 gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
          Length = 238

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D VN P N+ A++R+  A     I T        +       S        
Sbjct: 16  RQPDLSLIADQVNKPRNLSALVRNCDAVGIHSIHTVVPKEGYRTYRGTAKGSDYYVKSRA 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                   ++ +            SD      +       AL++GAE +G+     + + 
Sbjct: 76  HESVENAISVVRQQGMKVVAAH-FSDKAIDYREFDFTQPCALLMGAEKQGVSDVAAQMSD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +   + M G++ +LNVS AA + L   Q+   K
Sbjct: 135 AHVVIPMMGMVSSLNVSTAAGIILVEAQHQRLK 167


>gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
          Length = 242

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 10/236 (4%)

Query: 45  QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTI 101
           + +     G   V   L  ++   +   LL  +N L  L      LP   PV +VP   +
Sbjct: 3   RQQRFIAEG-KVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           D + G   VH+G+         P L  +        L++VL  +++  N+G+I R+A AF
Sbjct: 62  DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  +           + + GA   +PY     + D    +   GF  + L+  + 
Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + + +    ++ AL+LG EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 235


>gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
 gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
          Length = 229

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFSGRPRTYNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                      + K   +      L ++++   + +      A +LGAE  GL  + ++ 
Sbjct: 76  NDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCD-FTGPTAFVLGAEKWGLSDQARDL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+ +    
Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFESLRQR 167


>gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
 gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
          Length = 229

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFSGRPRTYNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                      + K   +      L +++K   + +      A +LGAE  GL  + ++ 
Sbjct: 76  NDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCD-FTGPTAFVLGAEKWGLSDQARDL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+ +    
Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFESLRQR 167


>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
          Length = 321

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133
                      PV     Q +D + G + VHQG+ +E +PL     D            Q
Sbjct: 85  ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 143

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E +      
Sbjct: 144 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 203

Query: 194 NLT------------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           +L                 +    G +    S        + + +    L+LG+EG GL 
Sbjct: 204 DLPGFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLS 263

Query: 242 PKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279
            +   +   +  +     +P  +++LNVS A  + L+   + 
Sbjct: 264 QEVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 305


>gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 153

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 1/147 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N GAI R   A      +        +   L ++     EH+      
Sbjct: 1   MHIVLYQPRIPPNTGAIARLCAATRTPLHLVGPLGFSLDDKYLKRAGLDYWEHVELTLWK 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N  +  Q +       +  +            + +  LILG E  GL  K    A  +  
Sbjct: 61  NWEEYRQNLDKSHRLIMTSARQGADYTRHS-YSFQDHLILGPETWGLPEKITSQADHLIR 119

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + + G +++LN+SNAA + LY      
Sbjct: 120 IPIWGEVRSLNLSNAAGIILYEGYRQL 146


>gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
 gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
          Length = 229

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NRRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVCLKGRLPTFNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +       +   +      LS+++      +      A +LGAE  GL P+    
Sbjct: 76  HRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCD-FTGPTAFVLGAEKWGLSPECAGL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 VDQAIVIPMSGMVQSLNVSVATATLLFEALRQR 167


>gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
 gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
          Length = 229

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++++HV+ PHN+ AILRS  A              S +       S     +
Sbjct: 16  NQRMANLTVLVEHVDKPHNLSAILRSCDAVGVLEAHAVSLSGRSRTYNSTAQGSQRWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      LS D+    + +      A +LGAE  GL     + 
Sbjct: 76  HSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCD-FTGPTAFVLGAEKWGLSENATKL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +   + M G++++LNVS A A  L+      
Sbjct: 135 MDTDVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
 gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
          Length = 169

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 4/162 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           ++  +L  V  + L +VL     P N G ++R          +        +   L ++ 
Sbjct: 1   MIEHSLTDVNATLLHVVLLEPEIPANTGNVIRLCANTGMRLHLIHPLGFYMDDRRLRRAG 60

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
               E+      +      + +          S+  ++           AL+ G+E +GL
Sbjct: 61  LDYREYARVEEHAGYAAFCRTVQPMRIFAFSASA--RRIFHAVRFQPGDALLFGSESRGL 118

Query: 241 RPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            P   E     ++  L M    ++LN+SNA AVA++      
Sbjct: 119 PPNLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQL 160


>gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 283

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 84/255 (32%), Gaps = 17/255 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLD 82
           R Y +M     +  +              ++ AL+     +  L   +            
Sbjct: 14  RIYSEMTEPELRHYYEPNGGIFIAESPKVIARALDAGCEPVSVLADRREIEAGREGNEAA 73

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    PV     + + +I G       L     P L    +  R+ + ++ L+ V 
Sbjct: 74  DILRRCSDVPVYVAEEKVLSRITGFRLTRGMLCAMRRPSLPGMEELCRDKRRIVFLEDVV 133

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+GAI RSA A   + ++ T   S       A+ + G +  IP+          ++ 
Sbjct: 134 NPTNVGAIFRSAAALGMEAVVLTPGSSDPLYRRAARVSMGTVFQIPWTYSPAPASLPREE 193

Query: 203 HSWGFQ------------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                                 +           + +K+A++LG EG GL  K+ ET   
Sbjct: 194 WPQAGIRRLKELGFVTAAMALRNDTVSIDDPVFDRTEKLAVVLGTEGDGLAAKSMETCDY 253

Query: 251 MAHLHMPGIIKALNV 265
              + M   + +LNV
Sbjct: 254 TIKIPMTHGVDSLNV 268


>gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 257

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 49  LFLYGVHTVSAALNN--------PSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPP 98
             L+G       L +          + I +++                LP+     TV  
Sbjct: 7   EILFGKRNFFEFLESLEQMAPERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSA 66

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAIL 151
           + +D+I   +     + + T      +L   +  Q +       ++LD + DP N+G +L
Sbjct: 67  RELDRIAQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNLL 126

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A       ++ + R +   + V+ K ++GA+ HI   R++NL   +  +    +  + 
Sbjct: 127 RTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWILA 186

Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              + ++ + + + +  ++A+I+G EG+G++    E A  +A + + G + +LNV  A  
Sbjct: 187 TDEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVACG 246

Query: 271 VAL 273
           + L
Sbjct: 247 ITL 249


>gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 258

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 5/231 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +        V+  + +    I  + A +             +  PV  V P+T+ + 
Sbjct: 27  KDGSFIADSPKVVNLLIESGVE-IKSIFAAQEYYDTYRDFLA-NYTIPVAYVAPKTVLEQ 84

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +    +H  + +        TLDA+ N   +++LD +++  NIG+I RSA A     ++ 
Sbjct: 85  IVGHRLHHNVMMHGVRPKESTLDALGNH--IIMLDEISNTDNIGSIARSAAALDVGSLLL 142

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQE 223
            ++     +    + + G +  + + R  N+ + +QK+            +    PL Q 
Sbjct: 143 PRQGPHPYARRALRVSMGHIGKLKFHRYDNIKETIQKLKKMGYRIFAAEVTKDSTPLSQV 202

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               K AL++G E  G+  +       +  + M   IK+ NV+ AA++ +Y
Sbjct: 203 RVPGKWALLMGHEQLGISDEILALCDEVVTIEMEEGIKSFNVAVAASIMMY 253


>gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 154

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLVANNGCMLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P +Q        L+ G+E  GL  + +    +  
Sbjct: 59  RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDEIRNGFESDF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  Y     
Sbjct: 119 RIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147


>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
 gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
          Length = 229

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++++HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NQRMADLTVLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      L  D++   + +      A +LGAE  GL  +    
Sbjct: 76  RDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCD-FTGPCAFVLGAEKWGLTEEATGL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 MDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
 gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
          Length = 157

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I RS         +       ++  +L ++     EH+    
Sbjct: 1   MAIHIVLYQPLIPANTGNIARSCAGTGVKLHLIRPLGFSTDDKMLKRAGLDYWEHVDIHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETA-T 249
              L +   +  +  F  I                +K    + G E KGL  +  E    
Sbjct: 61  YDGLQELFDRYKNGAFYYITKFGAKTHTSYDYSDREKDHFFVFGQETKGLPKELIEQNPD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   I++LN+SN A++ +Y     
Sbjct: 121 FCLRIPMNDNIRSLNLSNTASILMYEALRQ 150


>gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR]
 gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR]
          Length = 152

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K      +   +++  KK       +    L+ G E  GL  + 
Sbjct: 50  YWHLLDIRYYENFQELKAKYPASRFYYVTTKGKKFYTDVPYSADDFLVFGKETAGLPKEL 109

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E  A     + M   +++LN+SN+ A+ LY     
Sbjct: 110 LEENAEFCIRIPMINNVRSLNLSNSVAIVLYEAWRQ 145


>gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
          Length = 168

 Score = 86.4 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R+ VA      +            L ++     + +     
Sbjct: 1   MMNIVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
           S+  D L++           ++ ++K            L+ G E  G+  +         
Sbjct: 61  SDYKDFLERNPQASGNMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPEEILVHNEDHC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+SN+AA+ LY     
Sbjct: 121 IRIPMWGDIRSLNLSNSAAIVLYEALRQ 148


>gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 230

 Score = 86.4 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 7/227 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G +++  A+ N   +I ++           +         V+    QT++++V     + 
Sbjct: 7   GKNSIREAIEN-KVEIKKIFLINKKDYESIY-----KDIIVEYTNLQTLNELVKTNHQNI 60

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              L+     S        +  +++LDH+ D  N G+ILRSA AF  + II   + S   
Sbjct: 61  VAELKEFNYFSLENIIKDKADKVLILDHIQDSFNFGSILRSANAFGWNYIIIPSKRSVEI 120

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIAL 231
           + V  K +SG   ++  I+I +L  A+  +   GF   G    ++   ++    N  I L
Sbjct: 121 NDVALKVSSGGFYNVKIIKIDSLIVAINFLKEHGFWIYGSMLDENSFEIKNAPINFPIGL 180

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           I+G E  GL      +      + M G +++LN + A  + L+    
Sbjct: 181 IIGNEHSGLSKTMINSLDVKVKIMMSGTVQSLNAAVATGILLHDLSK 227


>gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
 gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
          Length = 256

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 31/257 (12%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATKNALARLD 82
            ++  +QK ++  +  +  + G H V           ALN    K++   A ++   R +
Sbjct: 21  NVKKLHQK-KYRQELGHCLVEGEHLVLELEKAAQNNPALNAS--KLYVTPAYQDWSTRFE 77

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                      + V  + +  I G     QG+                 +   + L  + 
Sbjct: 78  K----------QDVTERQMATIAG-TKTPQGILAVVPMAAIQPEQNNTLAA--VYLHEIQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILRS   F     + +       +  + +S+ GA+ H+P     ++    ++ 
Sbjct: 125 DPGNLGTILRSLAWFGGVRCLLSPGSVDPFNPKVIRSSMGAVFHVPMELDVSIDTLPERF 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIK 261
              G   +     S               I G E +G+     E   +    +   G+I+
Sbjct: 185 AKIGCLDMDGEPLSSPE-----FKACDCYIFGNEARGVPRDKLEALNAKPFTIPGVGLIE 239

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  +++Y  Q 
Sbjct: 240 SLNLATAVNLSIYERQR 256


>gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
 gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
          Length = 227

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +     +      +   SA         
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKVHAI--WPDKMRTLSHTSAGARNWVEVD 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  T   +         +   SD+     +       A+ILG+E  G   + ++ A 
Sbjct: 74  THDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAE 133

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++LNVS A+AV LY  Q   
Sbjct: 134 QDIIIPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
 gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
          Length = 229

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A                +       S     +
Sbjct: 16  NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFDGRPRTFNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +       K   +      L  D+K   E +      A +LGAE  GL  + ++ 
Sbjct: 76  HDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECD-FTVPTAFVLGAEKWGLTDQARDL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
 gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
          Length = 155

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A + +  +            L ++       +      NL
Sbjct: 4   VVLVHPQIPPNTGNIARTCAATATELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYHPNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L     +G + IG S    +   +        L+ G+E +GL      +  +  ++ 
Sbjct: 64  EDFLTIHQKFGGRLIGFSVSGHQSYLEYSFKSDDWLLFGSETQGLPANLLTSCDATVYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AV L+  +   
Sbjct: 124 MMEPKVRSLNLSVSVAVGLFEAKRQL 149


>gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
 gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
          Length = 230

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++D V+ PHNI AI+R+  A     +      + +  A      S     +  
Sbjct: 16  RQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRARMAAGTAMGSQRWVQVHK 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S       +          L SD   P  +       AL+LG E  G+  +      
Sbjct: 76  RDESTDVIRELQGQGVQVLAAHL-SDDAIPYREVDYTRPTALLLGTEKFGVSDEVASVVD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G++++ NVS AAA+ L       
Sbjct: 135 QNVTIPMMGMVESFNVSVAAAIILSEACEQR 165


>gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227]
 gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83]
 gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 345

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  E +  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
 gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
          Length = 209

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 2/160 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
               +   R + L + +D+V   HN+ AI+R+  A +   +    R+          +  
Sbjct: 11  KMKNILNTRQNTLRVFMDYVFSSHNLSAIVRTCDAVNVGKLYY--RHQRKVRLNNDITMG 68

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                       + L  +      +        ++LG E  G  
Sbjct: 69  AHKWIFHEYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGAS 128

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + + A     + M G+ ++LNVS A AV LY  Q   A
Sbjct: 129 DISIKYADKKVIIPMYGMSQSLNVSVANAVILYEAQRQRA 168


>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
 gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
          Length = 378

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 8/201 (3%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVL 138
                  V+ V    + ++ G  AVHQG+ L+TA   +  L +       +    LLM L
Sbjct: 14  AKSSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMAL 72

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GAI RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  A
Sbjct: 73  DGITDPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRA 132

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   G++ IGL+S+    LEQ      + ++ G+E  GL   T++    +  + + G
Sbjct: 133 LDSLKQEGYRVIGLASEGSVSLEQADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRG 192

Query: 259 IIKALNVSNAAAVALYITQNH 279
              +LN S A A+ LY     
Sbjct: 193 ATPSLNASVATALLLYEVARR 213


>gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans]
 gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 294

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 96/292 (32%), Gaps = 38/292 (13%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAALNNPSRKI 68
           +  RN  + K    F +        E                L+G+H+V  A+ +  R  
Sbjct: 3   RTARNFAEIKPNLLFRKAKMARKSAEKYVAKKIQVPELQGEALFGLHSVLEAIRSGKRDF 62

Query: 69  FQLLATKNALARLDWDANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   K    R D DA +                +    +D++   + +H G+ ++ + 
Sbjct: 63  HSVFLKKAVENRADSDARIKEILSRIDELGIQKTLLTDDQLDRLTEFQ-LHNGICMDASA 121

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L     +    S  +   D V DP N+GAI RSA  F  DG+   K   P         +
Sbjct: 122 LQFSNFEPKTVSIFV---DKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKS 178

Query: 181 SGALEHIPYIRISNLTDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           S        ++     +  +                     +  S K L+Q      + +
Sbjct: 179 SCGALEHLPVQQFLNFNEFRDKIKAAGGELVATCDPGAAEKAGISAKSLDQWTPEKPVGI 238

Query: 232 ILGAEGKGLRPKTQETATSMAHL-HMPG---IIKALNVSNAAAVALYITQNH 279
           +LG EG G+         ++  +  +      + +LNVS  A + L+     
Sbjct: 239 VLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISLQ 290


>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
           [Oryctolagus cuniculus]
          Length = 346

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 21/222 (9%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134
               A      PV     Q +D +   +         +     P  + +         QL
Sbjct: 90  ELLRAAEARGIPVLRPRRQKLDALCRHQVHQGVCMEVSPLQPQPWTETMGAGPGADPQQL 149

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +      +
Sbjct: 150 WLVLDGLQDPRNLGAVLRSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDD 209

Query: 195 LTDALQKMHSWGF-----------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L   LQ     G+           +T   S          + +    L+LG EG GL  +
Sbjct: 210 LAGFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQE 269

Query: 244 TQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
            Q +   +  +     +P  +++LNVS AA + L+   +   
Sbjct: 270 VQASCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQRK 311


>gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 272

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K     +  D    
Sbjct: 17  DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            P PV  V P+  +++ G       LA      L  + + +  ++ +++++ VND  NIG
Sbjct: 75  VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPASEELLATARRVVIMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+     AL+ +   GF+
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKALEGVREAGFR 194

Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D+K     E    +   +AL+LGAEG GL  +    A +   + M   + +LN
Sbjct: 195 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWVRIPMAHGVDSLN 253


>gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V A L    R I +++  +    R              P++    Q ID+
Sbjct: 2   EQYIVEGNISVKAVLLAQKRDIIKIIVDEKKKDRDTAFILRQAAQRNIPIEQNSRQAIDE 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +  +   H GL          TL A   ++S  L +++ V DP N G ILR+  A  CDG
Sbjct: 62  LA-QGKTHGGLLALCGERRFQTLQAVAEKDSVFLALIEGVEDPFNFGYILRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R   + + V+ K+++GA E++  I  +++   L +M     Q I         L 
Sbjct: 121 VIIPPRNWTTAAGVVTKASAGASEYLNLIVATDMEALLHEMKQADIQLICAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN---VSNAAAVALYITQN 278
                 K+ L +G E +GL    Q  +     +      +  N    + + A+  +    
Sbjct: 181 DYAFPLKLCLAIGGEMRGLSKHVQNHSDQNLFIPYRQDFR--NAMTAAASTAIFAFELVR 238

Query: 279 H 279
            
Sbjct: 239 Q 239


>gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
 gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
          Length = 180

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD V   HNIGA+ R++ AF  + I      +      + K+A GA 
Sbjct: 19  EFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 78

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +       +A+ ++H+ G+  + +       +        N K A+++G E KG++
Sbjct: 79  YTVDWKYCKQTQEAVNELHAEGYTVLAIEQCEGSTMLDHLVLDPNKKYAIVMGNEVKGVQ 138

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +       +   G   +LNVS    + L+   N   K
Sbjct: 139 QEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWEFANKMMK 179


>gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 276

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 87/247 (35%), Gaps = 12/247 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++    ++                +  AL    R    LL     L  +       
Sbjct: 19  DYTDLKDVKLRAVREPAEGLYMAESSTVIRRALAAGHRP-RSLLMADRWLESMADVIADW 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHV 141
              PV     + +++I G   +H+G            +            ++ + VL+ V
Sbjct: 78  PGVPVFVGSEEVLEQITGFH-LHRGALAAMHRPALMPVRELVASARGGAGARRVAVLEDV 136

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+GA  RSA A   D ++ T R +        + + G +  +P+ R+      L++
Sbjct: 137 VDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGLRE 196

Query: 202 MHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +   GF  +                   +K+A++LG EG G+     +    +  + M G
Sbjct: 197 LQDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACDVVVKIPMAG 256

Query: 259 IIKALNV 265
            + +LNV
Sbjct: 257 GVDSLNV 263


>gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 227

 Score = 86.0 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    ++ +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 TME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
 gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
          Length = 228

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 54/145 (37%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + ++ ++     N  A++R   AF    I T +        V     +     +  
Sbjct: 38  RTRYMTILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKFNPNVNIVRGTDKWIDLHR 97

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +    A  K   +         + K P   ++      L+ G E  G+  +    A 
Sbjct: 98  HRTTAEAIADLKGRGYRIVATTPHREDKTPETFDVAASPFVLVFGTEHAGISDEIVAAAD 157

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G++++LNVS +AA+ +Y
Sbjct: 158 EFLRIPMCGMVESLNVSASAAILIY 182


>gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 263

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 10/262 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S + +      R++   K ++   Q S    +   ++L G H   AAL    +    +  
Sbjct: 2   SRQPAATLIQSRDNVLVKDLRRLVQDSGAYRKQGRVWLEGDHLCRAALARGMQP--SVAV 59

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
              +   L     +        +      ++ G E+  +        +       +R   
Sbjct: 60  VAESFWPLVPLEWVQGAGKCVVLADALFAEVSGLESPARIG----FLMDWQASAVIRAGV 115

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VLD V D  N+G+ILRSA AF    ++  K  +   S  + ++  GA          
Sbjct: 116 ATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHF----GLQL 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             + + + + + G   I  SS   + +         A  +G EG+G+     + A     
Sbjct: 172 VESASSEDLDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRAAQHVR 231

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           +  PG  ++LNV+ AAA+ L+ 
Sbjct: 232 IGQPGGEESLNVAAAAAICLHA 253


>gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L ++++ V+ PHN+ A++R+  A           ++ + S  +  S         
Sbjct: 15  QRQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVV--WNQNYSLRVGTSLGAHHWVGM 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +                    +   SD      +       A+ILG E  G        A
Sbjct: 73  HEHSDIEKAIAHLKGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATKNAIALA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G+  +LNVS AAAV LY  Q   
Sbjct: 133 DKEIVVPMVGMTVSLNVSVAAAVILYEAQRQR 164


>gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
 gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
          Length = 171

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MFHIVLFEPEIPPNTGNIIRLCANTGAHLHLIQPLGFDLDDRRLRRAGLDY--HEWARVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            + +           Q    SS  ++P ++   +   AL+ G E +GL  K   T +   
Sbjct: 59  VHPSLEHFSRRVQPRQVWACSSRGQQPYDKAHFHPGDALLFGPETRGLPRKLLNTLSPKQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + M    ++LN+SNA AV LY       
Sbjct: 119 VLRIPMLPASRSLNLSNAVAVVLYEAWRQHN 149


>gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 238

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 104/235 (44%), Gaps = 15/235 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   V  A           ++  + L              +  V  +  DK        
Sbjct: 5   FGKKAVIEAFKQNELSEVYYVSYFDELKEF-----KSKNIKLNKVNKKFFDKYEVVHQNI 59

Query: 112 QGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            G+A E++  +    D+          + ++++VLD + DP N GAI R++ +F   GII
Sbjct: 60  LGIAKESSLTIHTDFDSFIEKINNLNTDKKIILVLDEIQDPGNFGAICRTSKSFQVAGII 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  + K++ G + ++ +++++NL++ L K+    + T+  + D K     +
Sbjct: 120 FKKNNQIQINETVIKTSLGTVNYLNFLKVNNLSEVLNKLKKENYWTVCTALDEKSIPLSK 179

Query: 224 IKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K D  K+ +I+G E KG+    ++ +  +  + M   +++LNVS + A+ LY  
Sbjct: 180 FKTDINKLVVIVGNENKGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILYYL 234


>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           reducens MI-1]
          Length = 152

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    + + A  +      +    ++   +P  +    +   L+ G E  GL  + 
Sbjct: 50  YWHLLDLHYHKSFAALQQQYPEGRFWYFTTKGGRPYHEASFEENDFLVFGKETAGLPKEL 109

Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 +   + M G +++LN+SN+ A+A+Y       
Sbjct: 110 LAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEALRQHN 147


>gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
 gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
          Length = 157

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++      ++    
Sbjct: 1   MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQE-TAT 249
             +L +   +     F  I                +K    + G E  GL     E    
Sbjct: 61  YDSLDELFGRYPHGEFYFITKFGKKYYDSFDFSDTEKDLFFVFGRETTGLPKDLLEANMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 235

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 3/233 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            ++G       +++    I ++   K+    L          P+  +  +    +  +  
Sbjct: 2   IIFGKQCFEYVIHHAPTHIQEIYLAKDIEKPLFAKLKRL-NVPILRIDNKKAQSLA-RGK 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +  P+      A+ +   L+VL  ++D  NIGAI+R+A A    GI+ + R +
Sbjct: 60  NHQGVFAKIKPIEQTPFKALLDFSSLVVLCGMSDIGNIGAIVRTAYALGIGGIVISDRDT 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +  A+     S +   +      + +       +   Q   + +        E   +K 
Sbjct: 120 LNTQALEGIFRSSSGALLNMPFSFHKSSLSVANEAKMKQFTLIGAGKNNKNILESTPNKW 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+ +G E  GL  K         H+ M     +LN S AA + +     H  K
Sbjct: 180 AIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI-DRIQHIKK 231


>gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 154

 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L  V      P N G  +R A        +        + A L ++      H   +  
Sbjct: 1   MLHFVFHTPEIPGNTGNAIRLAACTGARLHLVEPLGFNFDHANLRRAGLDY--HDLAVMD 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250
            + T           +    +S S          D   L+ G E  GL  K    E    
Sbjct: 59  VHPTVDALWDALGDARVFAFTSHSSTRHTDVAYRDGDVLLFGRESTGLPEKVLTDEHVHD 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+A++ALY      
Sbjct: 119 RVRIPMLPGRRSLNLANSASIALYEAWRQL 148


>gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 164

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  P  +        L+ G E  GL  +    A  +  + + G +++LNV+NAA+V LY
Sbjct: 85  HAAVPHHRFPFEADDILLFGTESSGLSEEVLAAAHRLVTIPIWGQVRSLNVANAASVVLY 144

Query: 275 IT 276
             
Sbjct: 145 EA 146


>gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 20/255 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84
            +  ++  +QK ++ ++     + G H V      AL NP  +  +L  T       +  
Sbjct: 2   KFDDIKKLHQK-KYRAEFGRFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                PF    +  + + +I   +     +AL   P+    + A    +  + L  + DP
Sbjct: 54  EQWQSPFKTHLISDRQMAQIADTKTPQGIVALV--PMPGAPVAAPVAGERAIYLHEIQDP 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+   F     + +       +  + +S+ GA+ H P      L     +   
Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPLELDVALDSLRTRFAR 171

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263
                +                     + G E +G+         +    +   G I++L
Sbjct: 172 IACLDMQGEPVQSTAFTTFE-----CYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226

Query: 264 NVSNAAAVALYITQN 278
           N++    +  Y    
Sbjct: 227 NLAATVNMCAYELSR 241


>gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 8/244 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++  +  +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRMKIDGTGNVAGLNISVATGVLLGE 338

Query: 276 TQNH 279
               
Sbjct: 339 WWRQ 342


>gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 158

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE+    R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +  M  +  + + LS+ +K    Q        L+ G E  G+     E+A   
Sbjct: 61  HIDWQHFISSMKRFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPDYVHESADYT 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LKIPMQPQSRSLNLAMSVAITTGEALRQI 149


>gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 9/236 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +       G   ++      +    +++  ++     D    +     +  +     
Sbjct: 24  YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDEKYKISKHDNLTILKDNLF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D++       +                      +++LD + DP N G I+R+ +A +   
Sbjct: 79  DEVS----TQENSQGIIFLYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQN 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I TK      +    ++    +  +  I  +         +    +      +     E
Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPEKIVEFLNNKNYLKIATALHEDSISYE 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    +  A I G EG G+     E +   A + + G I++LNVS A  + LY  +
Sbjct: 195 KIELRENNAFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 150

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G +LR     + +  I      P+      ++    L+ I  +R  + 
Sbjct: 3   IALYQPDIPQNTGTLLRFCACLNVEAHIIEPAGFPTSDRHFRRAGMDYLDQITIVRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +   Q       + I L++    P  ++       L+LG E  G+  +    A +   + 
Sbjct: 63  SKFEQWRKDADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARIVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LNV+ AAA+ +      
Sbjct: 123 MQPGFRSLNVAMAAALVVGEALRQ 146


>gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 272

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 92/238 (38%), Gaps = 5/238 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K     +  D     
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAK--WVDVMRDVIDEV 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P PV  + P   +++ G       LA      L    + +  ++ ++V++ VND  NIGA
Sbjct: 76  PAPVYAIQPDLAERVTGYHVHRGALASMQRKPLPDAAELLVGARRVVVMESVNDHTNIGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF+ 
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPRGLEAVREAGFKL 195

Query: 210 IGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+   K     E    +   +AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 196 LALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253


>gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 254

 Score = 85.7 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 29/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++                      K     ++ ++          G   +   
Sbjct: 1   MEIIESKEN-------------------KLIKFLKKLKQKKYRDSEAQFLAEGHKFL--- 38

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  + +++  +  +  L  +           V  +   ++  +E            
Sbjct: 39  ---DYDTVPEIIIVREDVKDLYMEKLDRFECKKILVSEKIFQELSSQENSQG----IIIV 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S  L++LD V DP N+G I+R   A +   II TK      +  + ++ 
Sbjct: 92  YYKKNNDLNSLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRAT 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ ++    +           +              P  +    +K A+I G EG+G+
Sbjct: 152 MGSILNVNLFYLEKQEIIKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRGI 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +    +     + +    ++LNV+ A+A+ LY  +
Sbjct: 212 CDEFINISDCKTIIPILSNTESLNVAVASAIILYKFR 248


>gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 110

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +++         +  +A+++G+EG+G+     +       + M G + +LN S
Sbjct: 31  FWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNAS 90

Query: 267 NAAAVALYITQNHF 280
            AA++ +Y      
Sbjct: 91  VAASLMMYEVFRKR 104


>gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
          Length = 229

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q       A +LGAE  GL             +   G++++LNVS AAAV L+     
Sbjct: 107 YRQCDFTGPTAFLLGAEKWGLSEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQ 166

Query: 280 F 280
            
Sbjct: 167 R 167


>gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 154

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P +Q        L+ G+E  GL  + +    +  
Sbjct: 59  RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  Y     
Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 154

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P +Q        L+ G+E  GL  + +    +  
Sbjct: 59  RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  Y     
Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 215

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
             G+  +   LN+  R + +L A++       +D +       +    + I  +      
Sbjct: 2   AEGIKVIRELLNSDFR-LDKLFASE-----TIFDISKDQFVLTEERDLKKISFL-KTPQT 54

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             GL       L    D      L + LD V DP N+G I+R    F    ++ +     
Sbjct: 55  ALGLFKIPQQNLGVLED------LTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVD 108

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + +S  G++  +  +  +       +           +    + + Q+    K  
Sbjct: 109 CFNPKVIQSTMGSITRVNVVYKNLSEFLQSQDIV-----SYGTFMDGENVYQKRLQQKSV 163

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQNH 279
           L+LG E  G+ P+ +   +    +   G     ++LNV+ A A+ L   + +
Sbjct: 164 LVLGNEANGINPEIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215


>gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
 gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
          Length = 354

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 33/115 (28%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            + +   S         S          I  S                          + 
Sbjct: 187 HVISCDSSKRYRDNRHVSMGAEKWLDIEIWNSPAECFSALKKRGYRIATTYLGTDSVCVY 246

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   A+++G E +G+     E +     + M G++ + NVS AA + ++  
Sbjct: 247 DMDWSQPTAIVVGNELRGISDDALELSDLHCSVPMKGMVDSFNVSVAAGILMHHA 301


>gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
 gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
          Length = 200

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +D+V  PHN+ AI+R+  A +   +    R+          +          
Sbjct: 19  RQDTLRVFMDYVYSPHNLSAIVRTCDAVNVGKLYY--RHQKKVKLNNEITMGAHKWLFTE 76

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                               + L         +        ++LG E  G    + + A 
Sbjct: 77  YVEDIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYAD 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G+ ++LNVS A AV LY  Q   +
Sbjct: 137 KKVIIPMYGMSQSLNVSVANAVILYEAQRQRS 168


>gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 269

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 4/239 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +                 +  AL         +L  +  L          
Sbjct: 16  DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDAAPLLEGF 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +R+++ ++VL+ + D  N+G
Sbjct: 75  PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF 
Sbjct: 135 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 194

Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L+ +           D    IAL+LG EG GL       A S   + M   + +LN
Sbjct: 195 LAALALEDDAVTLDAFAADPPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 253


>gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3]
          Length = 227

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    ++ +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P    ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans
           SPH-1]
          Length = 165

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+ P  R 
Sbjct: 1   MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRLMRRAGLDYHEYAPVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    LQ       +   +++ S  P           L+ G+E KGL  + +E      
Sbjct: 61  ADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDWLVFGSESKGLPAEVREQFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMLPQQRSLNLSNAVAVTVFEAWRQ 149


>gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 284

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 4/239 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +                 +  AL         +L  +  L  +       
Sbjct: 31  DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDVAPLLEGF 89

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +R+++ ++VL+ + D  N+G
Sbjct: 90  PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 149

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF 
Sbjct: 150 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 209

Query: 209 TIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                                ++IAL+LG EG GL       A S   + M   + +LN
Sbjct: 210 LAALALEDDAVTLDAFAADAPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 268


>gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
          Length = 226

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +Y    ++  +     KI +L   K    +      +   F +K +PP    K+    +
Sbjct: 2   LIYAKQPINYIIQKHPTKIKKLYLAKEMDKKEYSQL-MKIGFEIKRIPPDAAGKMCKNAS 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  E    +        N + ++VL  V D  NIGAI+R+A A   DG+I      
Sbjct: 61  -HQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAIIRTAYALGVDGVIACG--V 117

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S         S          I      +         T   +      +       K 
Sbjct: 118 KSLPIEAIVRTSTGALFDMPFAIEQNVLDVLNDLKMSGFTSYGADMGATDIRDVKIKQKR 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+EG+GL  +       +  + M     +LNVS A A+ +
Sbjct: 178 ALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAGAILM 221


>gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14]
          Length = 1716

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 5/158 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              ++++++M    ++   N+  + R+   F  + ++ +   +    A     +S A + I
Sbjct: 1551 YEKSNRVIMCASLIDKVTNLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWI 1610

Query: 188  PYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               +IS     +  +H W             +   +   +    DK  +ILG+EG G+  
Sbjct: 1611 KMEQISRGESLIDAIHHWKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPV 1670

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +          +   G++++LNV  + A+ L+      
Sbjct: 1671 EILRLVDVCVEIPQFGLVRSLNVHVSGAILLWEYTRQR 1708


>gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 272

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K     +  D    
Sbjct: 17  DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            P PV  V P+  +++ G       LA      L    + +  ++ ++V++ VND  NIG
Sbjct: 75  VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF+
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGFR 194

Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D+K     E    +   +AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 195 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 253


>gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 256

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 5/239 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K     +  D    
Sbjct: 1   DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAK--WVDVMRDVIDE 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            P PV  V P+  +++ G       LA      L    + +  ++ ++V++ VND  NIG
Sbjct: 59  VPAPVYAVAPELAERVTGYHVHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNIG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF+
Sbjct: 119 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGFR 178

Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D+K     E    +   +AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 179 LLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 237


>gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 221

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 5/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++D VN PHN+ AILR+  A            S S  +  ++    +      
Sbjct: 16  RQPTLSVLMDEVNKPHNLSAILRTCDAVGAMTAHAVPPQSMSLGSFRSRIFEASSGSAHK 75

Query: 190 IRISNLTD-----ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                                        S       +        ++LGAE  G+    
Sbjct: 76  WVSVQQHASALEAIRTLQGQGVQVLATHLSQRSVDYREPDYTRPTCVLLGAEKFGVSDVA 135

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E A +   + M G++++LNVS AAA  L+  Q   
Sbjct: 136 AEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQR 171


>gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 156

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N+GAILR A  FS    I          A L ++A          R +N 
Sbjct: 7   IALYQPEIAGNVGAILRLAACFSVPVDIVMPMGFAFSDAKLKRAAMDYGASADVTRHANF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +  + G + + +SS + + L +        L++G+E  G+    ++ A     + 
Sbjct: 67  EAFDAQRRARGQRLMLMSSHASQRLPEVEFRADDILLMGSESAGVPDAVRDLADVRVRIP 126

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LN++ +  +A+      
Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150


>gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 275

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 27/282 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +    +   +  +++ Q+         +     + GV  ++ AL         L   +  
Sbjct: 2   AKTLTITTRNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQP 61

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLM 136
           L+R   D           + P+ + ++ GKE    + LA+   P        V  + L++
Sbjct: 62  LSRWCRDLLDRADARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVV 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V D    P NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R+ +  
Sbjct: 122 VFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHR 181

Query: 197 DALQK------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           D L              Q IG        + +        L++G E  GL    QE +  
Sbjct: 182 DVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDR 241

Query: 251 MAHLHMPG----------IIKALNVSNAAAVALYITQNHFAK 282
           M  + + G                      VALY      A+
Sbjct: 242 MVRIPIVGAASSLNAAAAGT----------VALYEAARQRAE 273


>gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 265

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 5/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDK 103
           +       G   +   L++       +L  ++ L  L    +      PV  V    +D 
Sbjct: 28  RQGRFVAEGKVVLDLLLSSRRFSAESVLVLESRLGGLKDTLDKAPVDLPVYIVTGAVMDA 87

Query: 104 IVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I G       LA+       P    LDA+    L++VL  +++  N+G+I R+A AF  D
Sbjct: 88  IAGFHLHRGILAIGRKETPQPAGPLLDALPALALVVVLVGISNHDNMGSIFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++              + + GA   IP+   ++       +   GF+   LS   +  +
Sbjct: 148 AVLIDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTAMLAERGFEQFALSPRGRTDI 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  ++AL LG EG+GL             + M     +LNV+ A+A+AL+  
Sbjct: 208 RDAKSAGRLALYLGTEGEGLPESLLARL-QTVRITMAEGFDSLNVAAASAIALHHF 262


>gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 179

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 65/153 (42%), Gaps = 2/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + ++  ++    N+G+I R+  A     +I T   +      + K A GA E + +
Sbjct: 22  QKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGATETVDW 81

Query: 190 IRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +++  +A    K        + ++ +++   E   ++  + L+LG E  G+  +  + 
Sbjct: 82  EYVADPLEALADLKDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGIDDEVLQE 141

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +   G   +LNV+ +A +A++     F
Sbjct: 142 CDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQF 174


>gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
 gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
          Length = 158

 Score = 85.3 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
               A  + ++  ++    ++ +              L+ G E +GL  +  E+      
Sbjct: 64  AAFIAYLEENNPNYRLFACTTKTTGHHTDAKYQQGDVLLFGPETRGLPAEVIESLPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SNA A+  Y     F
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAYEAWRQF 152


>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 229

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L ++L+HV  PHN+ AILRS  A              + +       S     +
Sbjct: 16  NHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVSLQGRTRTFNSTAQGSQKWVPL 75

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +      L  ++K   + +      A +LGAE  GL  + ++ 
Sbjct: 76  NDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCD-FTGPTAFVLGAEKWGLTDRARDL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M G++++LNVS A A  L+      
Sbjct: 135 MDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 275

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 98/282 (34%), Gaps = 27/282 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +    +   +  +++ Q+         +     + GV  ++ AL         L   +  
Sbjct: 2   AKTLTITTRNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQP 61

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLM 136
           L+R   D           + P+ + ++ GKE    + LA+   P        V  + L++
Sbjct: 62  LSRWCRDLLDRSDARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVV 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V D    P NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R+ +  
Sbjct: 122 VFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHR 181

Query: 197 DALQK------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           D L              Q IG        + +        L++G E  GL    QE +  
Sbjct: 182 DVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDR 241

Query: 251 MAHLHMPG----------IIKALNVSNAAAVALYITQNHFAK 282
           M  + + G                      VALY      A+
Sbjct: 242 MVRIPIVGAASSLNAAAAGT----------VALYEAARQRAE 273


>gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 154

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P +Q        L+ G+E  GL  + +    +  
Sbjct: 59  RHKNYQDFLAAVPGKRIFACTTKGSRPYDQPAYQPGDVLLFGSETSGLPDEIRNGFESDF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  Y     
Sbjct: 119 RIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis
           domestica]
          Length = 517

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 91/314 (28%), Gaps = 56/314 (17%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y +     R   K+ +  +      +   + L G   ++ AL   +       +    
Sbjct: 96  LRYERALPGDRRLSKVMTIVKSRSFRDKQGKILLEGRRLIADALRAGAVPRTVFFSRLEY 155

Query: 78  LARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135
           +  L  D         VK    +    +V  + +    A      +  P      +  LL
Sbjct: 156 VKELPADKLKGVSLIKVKFDDIKEWSDLVAPQGIMGIFAKPDHVKMKYPETQLEYSLPLL 215

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I     
Sbjct: 216 LICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLRAGMGAHFQVPIISNLEW 275

Query: 196 TDALQKMHSWGFQT---------------------------------------------- 209
                                                                       
Sbjct: 276 ETIPNYFPPDTRVHVADNCGLHTRALAQRAGKASDQGWVCDRRFQKHLKYEEVDDPEEGE 335

Query: 210 ----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIK 261
                 L     +P +    +   A+++G E  G+  ++   A         + +   + 
Sbjct: 336 VPADSWLPELQVQPYDAAWTDAPAAVVIGGETHGVSLESLHLAESTGGKRLLIPVVPGVD 395

Query: 262 ALNVSNAAAVALYI 275
           +LN + AA++ L+ 
Sbjct: 396 SLNSAMAASILLFE 409


>gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13]
 gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 412

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 100/329 (30%), Gaps = 74/329 (22%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61
            K +H  KL+    + K     NQKS  +                    +YG ++V AAL
Sbjct: 81  KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111
            NPSR     L     +               + V    ++ +      +          
Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196

Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                           L   T    +   L + LD + DPHNIG
Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194
           AI+RSA     D I+ ++R     + V++K++SGA                         
Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   +    +     + S   L        + L++G E +G+R   +  +     +
Sbjct: 317 TFITSHLANXTSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376

Query: 255 HMPG----------IIKALNVSNAAAVAL 273
              G          I+ +LNVS A A+ +
Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae
           YJM789]
 gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291]
 gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796]
 gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3]
          Length = 412

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61
            K +H  KL+    + K     NQKS  +                    +YG ++V AAL
Sbjct: 81  KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111
            NPSR     L     +               + V    ++ +      +          
Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196

Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                           L   T    +   L + LD + DPHNIG
Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194
           AI+RSA     D I+ ++R     + V++K++SGA                         
Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   ++   +     + S   L        + L++G E +G+R   +  +     +
Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376

Query: 255 HMPG----------IIKALNVSNAAAVAL 273
              G          I+ +LNVS A A+ +
Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 227

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    ++ +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
 gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
          Length = 155

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+         +        +   L ++     E +  + 
Sbjct: 1   MPLHVVLYQPEIPQNTGNIARTCALTGTFLHLIHPLGFRLDEKHLKRAGLDYWEEVNILE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
            S      +         +      +             L+ G E +GL     E A   
Sbjct: 61  HSTWAAFREAYPDANCYYLSTKGQRRYTK--VDYRPDDFLVFGPETRGLPASILEPAGDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M   +++LN++N+ A+ LY      
Sbjct: 119 VLRVPMRPGLRSLNLANSVAIVLYEALRQL 148


>gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
 gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
          Length = 156

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G++ R   A      +        E   L ++      ++     
Sbjct: 1   MIEVVLYEPEIPQNTGSVARLCAAAKTPLHLIKPLGFSLEDRYLKRAGLDYWPYVDLTVW 60

Query: 193 SNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
               D L           T G    +  P          +LI G E +GL     + A+ 
Sbjct: 61  DRFDDYLAARPRNRLVATTAGNRGHTAVPYHTLAYTPNDSLIFGTESRGLPESLLDAASI 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + + G +++LN++NAA++ LY    
Sbjct: 121 RLRIPIWGHVRSLNLANAASIVLYEALR 148


>gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 259

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 12/223 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            A L    +++FQ  A +  L   +             V P  I   +            
Sbjct: 6   EARLQQELQRVFQAAAQQGHLTDPEALVARLQG-----VSPDVIVAWLQPYLT-----ER 55

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R   ++ V++ + +  N+ A++RSA A    G    K           
Sbjct: 56  RRQRIEQVLDG-RTYTVVPVVEGLANTGNVSAVMRSAEALGYQGFGIIKGQVQKYKTSER 114

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
             A GA + +         +A+  + + G++ +  + +  +P++        AL+ G E 
Sbjct: 115 T-AQGADKWLDVWTWPTAAEAVPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEV 173

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+  +    A +   + + G  ++ N+S AAA+ALY  Q   
Sbjct: 174 EGVSRELLAMADARCVIPIVGFTQSFNISVAAAIALYHAQRDR 216


>gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 176

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             N  + LI+G E +GL          +A +   G   +LN++ A  V LY  + 
Sbjct: 113 YANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 167


>gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii
           C-113]
          Length = 161

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R          +        +   L ++      H      
Sbjct: 1   MFHVILLEPEIPPNTGNIIRLCANTGAMLHLVQPLGFELDDRRLRRAGLDY--HEWAKVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +     + +   Q    S+  +   ++       AL+ G E +GL  +         
Sbjct: 59  VHPSLEHFLVQTQPRQLWACSTRGRHSYDKANFRPGDALLFGPETRGLPRELLGILPPQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M    ++LN+SNA AV LY     
Sbjct: 119 VLRIPMEPTSRSLNLSNAVAVVLYEAWRQ 147


>gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 167

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +     S+ 
Sbjct: 3   VVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L++      +    ++ + K            L+ G E  G+  +   E       +
Sbjct: 63  QDFLERNPDALGRMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPEEILVENEDHCVRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ ++ LY     
Sbjct: 123 PMWGDIRSLNLSNSVSIVLYEALRQ 147


>gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces
           cerevisiae RM11-1a]
          Length = 385

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61
            K +H  KL+    + K     NQKS  +                    +YG ++V AAL
Sbjct: 54  KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 109

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111
            NPSR     L     +               + V    ++ +      +          
Sbjct: 110 LNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 169

Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                           L   T    +   L + LD + DPHNIG
Sbjct: 170 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 229

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194
           AI+RSA     D I+ ++R     + V++K++SGA                         
Sbjct: 230 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 289

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   ++   +     + S   L        + L++G E +G+R   +  +     +
Sbjct: 290 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 349

Query: 255 HMPG----------IIKALNVSNAAAVAL 273
              G          I+ +LNVS A A+ +
Sbjct: 350 PFGGIEKGNRAPEPIVDSLNVSVATALLI 378


>gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 53/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   N P N G ILR A        +      P   + L ++    LE    IR  + 
Sbjct: 4   LALFQPNIPQNTGTILRLAACMGVAVHLIEPAGFPLSDSALRRTGMDYLERAALIRHLDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   + G + + L++ S  P           L+ G E  G+     E A +   + 
Sbjct: 64  PAFEAWRRAEGRRLVLLTTKSADPYPHFPFQVSDILLFGRESAGVPAAVHEAADARLTIP 123

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ +AA+ L      
Sbjct: 124 MVAGLRSLNVAVSAAMVLGEALRQ 147


>gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 240

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 24/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S   K +   +       G   V+  L+        L   ++            
Sbjct: 6   KIKLIRSLETK-KGREKVGLFVAEGPKVVNDLLHEGFVADEILEDIED------------ 52

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +K V      + V           +         +   ++QL++ LD V DP N+G
Sbjct: 53  ----IKKVSFLQHPQPVLGVFKMPEEDSKVTNDYLSLFNKYIDNQLVLALDGVQDPGNLG 108

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I ++   +   +  + ++  G++  +    ++         +     
Sbjct: 109 TIIRIADWFGIENIFSSYETADCWNPKVVQATMGSIARVKLHYLNLN---ELIDYLPVDY 165

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            I  +      +  +  +    +++G EG G+  + +        +          ++LN
Sbjct: 166 PIYATLLDGNNIYSQELSRHGMIVMGNEGNGISSQLRTKINRKLLIPNYPPERETAESLN 225

Query: 265 VSNAAAVALYITQNH 279
           V+ A ++     +  
Sbjct: 226 VAIATSIVCAEFRRR 240


>gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92]
 gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus
           525.92]
          Length = 226

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L+   + I ++  +K    +L           +  V  Q    +  +  
Sbjct: 2   IIYGKQLFLHILDKHPQTIEEIYLSKECDKKLFSRIC-GVGKHISRVDNQKAQSLA-RGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   +        ++ ++    + VL  ++D  NIGAI RSA A  C+G+I   +  
Sbjct: 60  NHQGFLAKVGEYEFAAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVAKSI 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E       AS    +   I +     +L          +  ++ + K + +   + K 
Sbjct: 120 NME---GVLRASSGAAYEIPIALFEDGLSLLNELKQSGFCLYATASNGKNVHEMKFDPKR 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ALI+G+E +G+  K          + +     +LNVS A A+  
Sbjct: 177 ALIMGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220


>gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 152

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +        ++ +K+            ++ G E +G+  + 
Sbjct: 50  YWHLVDLKIWESYEDFINGNPDAVIYYATTKTKQRYTDIKFKKNDFVMFGPESRGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A     + M  + ++LN+SN+AA+ LY     
Sbjct: 110 LNKNADHCITIPMIDMGRSLNLSNSAAIILYEALRQ 145


>gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 227

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    ++ +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
 gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
          Length = 151

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKALNVSN 267
              L++  ++P   E   D   L+ G E KGL     E+       + M    ++LN++ 
Sbjct: 76  YFYLTTKVQRPYWDEQFRDGDFLVFGRETKGLPEPLLESNRDRCLTIPMTPQTRSLNLAT 135

Query: 268 AAAVALYITQNHFAK 282
           +  + LY       K
Sbjct: 136 SVGIVLYEAVRQLRK 150


>gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
 gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
          Length = 157

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++      ++    
Sbjct: 1   MPLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQE-TAT 249
             +L +  ++  +  F  I                +K    + G E  GL     E    
Sbjct: 61  YDSLEELFERYPNGEFYFITKFGKKYYDSFDFSDMEKDHFFVFGRETTGLPKDLLEANMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 157

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE+    R
Sbjct: 1   MMLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFSLSDRNLKRAGMDYLEYASLNR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +  M  +  + + LS+ ++    Q    +   L+ G E  G+     E     
Sbjct: 61  HIDWQSFMSTMKHFNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPDYVHEAVDHS 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LKIPMQPHARSLNLAMSVAITTGEALRQI 149


>gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
 gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
          Length = 229

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     A +LGAE  GL  +  +       + M G++++LNVS AAA  L+     
Sbjct: 107 YRSCDFTKPSAFVLGAEKWGLTAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQ 166

Query: 280 F 280
            
Sbjct: 167 R 167


>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 154

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++ A L ++       +    
Sbjct: 1   MPLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +  +K     F      ++ +         D   L+ G E KGL P+     A +
Sbjct: 61  HESFAEVQEKYQEGRFFYATTKANQRYSD--IAFQDGDFLVFGKETKGLPPELLAANADT 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN+AA+ +Y     
Sbjct: 119 CIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147


>gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 153

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A + +  +            L ++     +H+ Y+  
Sbjct: 1   MLKVVLYQPEIPQNAGNIARTCAAAAAELHLIRPLGFRWGDPKLKRAGLDYWDHLHYVLH 60

Query: 193 SNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +    ++K    +   +    SS + +   +        L+ G E +GL  +  E    
Sbjct: 61  DSWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDYLLFGPETRGLPKEVLEQF-P 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + MPG +++LN++ +  + L+      
Sbjct: 120 SVTIPMPGKVRSLNLAVSVGIGLFEALRQL 149


>gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 577

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 53/321 (16%)

Query: 8   KSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTV 57
           +  +I +  + +  + +  ++  Y+         R T Q          E   +YGV  V
Sbjct: 251 RWSEIKNRFNRYDVRDQGHDNAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPV 310

Query: 58  SAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPHPFPVKTVPPQTIDKI 104
            AAL+   R+ + L   +                       +      +K      ++ +
Sbjct: 311 LAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFEKVLKISEKLGLNLKETSKHDLN-M 369

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L+ +PL    +  +           L + LD V DP N+GAI+RSA  F
Sbjct: 370 VADNRPHQGLVLDASPLELVKVKELDPISSEEEKSSLWVALDEVTDPQNLGAIIRSAYFF 429

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   + S   SAV++K+++G+LE +      N+   L+     G++ +G S   K
Sbjct: 430 GATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPK 489

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL--HMPGI--------------- 259
                E+       L+LG EG GLRP  + + T +  +  +MP                 
Sbjct: 490 AVALNEVLPGSPTILVLGNEGTGLRPLVERSCTELVRISGNMPNDVSVTESDDAEGEGFR 549

Query: 260 ----IKALNVSNAAAVALYIT 276
               +++LNVS AA + L+  
Sbjct: 550 SFLAVESLNVSVAAGLFLHHL 570


>gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 268

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L++  +++  +   K   +   R   D    +      V    +D++     
Sbjct: 13  GLKPVLELLSSDPQRVDCVFCKKGLRSPEAREVQDLCRKNDIRFTLVEQAALDRLCRPGG 72

Query: 110 V--------------HQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGA 149
                          HQG+    A      L+            +++ LD V DP N+G 
Sbjct: 73  PRRGDAREAGRDAVAHQGVVARLAATSFCELEHIFAAVEQAPLPIILALDQVQDPGNVGT 132

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+  A    GII  +  S        +SA+GALEH+P  R++NL  AL      G   
Sbjct: 133 LCRTLYALGGAGIILPRHNSAYLGPAARRSAAGALEHLPVARVTNLGHALDSAEEAGLTI 192

Query: 210 IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            G    +                 L+LG E KGLRP   +    M  + +     +LNV+
Sbjct: 193 YGAGGQNGPASVDAFAEPVRLPAVLVLGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVA 252

Query: 267 NAAAVAL 273
            A A+ L
Sbjct: 253 QAGAILL 259


>gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
 gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
          Length = 170

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++++D V DP N+G I+R+A AFS D II  K  +      + +S  G+  HI  
Sbjct: 20  SKYSRVLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQGSNFHIDC 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               ++ D + KM  +      L  D        +  +K+A+I G EG G+  +  +   
Sbjct: 80  FDNIDILDVIPKMEDFDLYATSLKGDRYLEQIDSV-GEKVAVIFGNEGSGVSEEILDKVN 138

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++  ++M G  ++LNV+ AA + ++   
Sbjct: 139 NLLKINMTGQAESLNVAVAAGIVMHYIA 166


>gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 279

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 18/272 (6%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSR 66
              +  + D    +L      Y+ ++  +   R     +     G   V   L  ++   
Sbjct: 12  HPCVHPIDDPDDIRLSP----YRSIREKDLVGR----QQRFIAEG-KVVLNVLFSSSARF 62

Query: 67  KIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +   LL  +N LA L      LP   PV +VP   +D + G   VH+G+         P 
Sbjct: 63  ETESLLVLENRLAGLGEQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPG 121

Query: 126 LDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+A+        L++VL  +++  N+G+I R+A AF  D ++  +           + + 
Sbjct: 122 LEAMLGALPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSV 181

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA   +PY    N+ + +  +    F  + LS  S   +    K D+ AL+LG EG+GL 
Sbjct: 182 GATLKVPYFHGGNIDEIIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLP 241

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P+        A + M     +LNV+ A+ +AL
Sbjct: 242 PRLLGKL-QTARIPMSTAFDSLNVATASGIAL 272


>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 272

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 6/250 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +  +K  +     +   + +     G+ TV+  L+  + +   +          D     
Sbjct: 17  KQKRKFFARLHDKKFREKEQLFLAEGLRTVTELLSACNAEDDLVAIVVKVPIDNDLKKPD 76

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVND 143
            +   V        + I   E     + +   P             + + L+++ D + D
Sbjct: 77  CNAGKVFVAEKSDFETISATEQTQGVVGIFRQPKADEASVFQQLEEKKTALVLIWDGIQD 136

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ++R+A  F  D I  +       +  + ++++G+L     +  S     +    
Sbjct: 137 PGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLF-ALPLIKSASLGFVVDEL 195

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKA 262
                T+  SS +   + +  K  K ALI+G+E  G+             +      +++
Sbjct: 196 KQKRLTVYASSPAGTSIWEVSKPKKTALIIGSEANGVTSALFLKTDQQITIPGNSSAVES 255

Query: 263 LNVSNAAAVA 272
           LN + +A + 
Sbjct: 256 LNAAISAGIL 265


>gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
 gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
          Length = 209

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++LD VN PHN+ AILR+  A                +     SA         
Sbjct: 8   RQPDLRVLLDQVNKPHNLAAILRTCDAVGVFQA-HAVWPGGVPAVHHHSSAGVGKWVNVV 66

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +      +                  Q       A+++GAE  G+     +   
Sbjct: 67  AHPDVCSAIQALHNEGLRVYAAHPVAGAVDYRQADYTVPCAVLMGAELWGVSEAACQRVD 126

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G+  ++NVS AAAV LY  Q   
Sbjct: 127 EFITIPMFGLGASVNVSVAAAVILYEAQRQR 157


>gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
 gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
          Length = 160

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V+     P N G + R   A      +        E   L ++     + +      
Sbjct: 1   MHVVMVEPEIPGNTGNVSRLCAANHITLHLVKPLGFSLEDKYLKRAGLDYWDLLDLHVHE 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
           N  +  Q+  +  +  +   SD        +  +   L+ G E KGL     +  A    
Sbjct: 61  NFEEVQQQYPNSRYFYLTTKSDKSYTD--IVFREDDMLVFGKETKGLPEDLLKRNADYCF 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M    ++LN+SNA A+  Y      
Sbjct: 119 RIPMIDKARSLNLSNAVAIVSYEALRQL 146


>gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
 gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
          Length = 162

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +         K +K    + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 253

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 13/241 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQ-----LLATKNALARLDWDA--NLPHPFPVKTVPP 98
             + +++G  T+         K        L   +N    +       LP    V  +  
Sbjct: 6   TRSEYIFGKRTLIELTEAHIGKEHSFPFTDLYVKENPGTDIVEKILNRLPSFVKVHRISG 65

Query: 99  QTIDKIVGKEAVH------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             +D +V                 + +   +            +VLD + DP N+G ILR
Sbjct: 66  SKLDSLVPGRNHQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVLDRIQDPGNLGNILR 125

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A  F    II  +R S   + V+ K +SGAL  +    + NL + L+ +   G+  +  
Sbjct: 126 TAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANTLELLKENGYWIVST 185

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S    +   +  +  ++A+++G EG+G++    E +  +  + + G + +LNV+ A  + 
Sbjct: 186 SDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGIV 245

Query: 273 L 273
           L
Sbjct: 246 L 246


>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     A +LGAE  GL         +  ++ M G++++LNVS AA+  L+     
Sbjct: 107 YRYCDYTGPTAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQ 166

Query: 280 F 280
            
Sbjct: 167 R 167


>gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
 gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
          Length = 240

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 24/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S   K +   +       G   V+  L+        L   ++            
Sbjct: 6   KIKLIHSLETK-KGREKVGLFVAEGPKVVNDLLHEGFVADEILEDIED------------ 52

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +K V      + V           +         +   ++QL++ LD V DP N+G
Sbjct: 53  ----IKKVSFLQHPQPVLGVFKMPEEDCKVTNDYLSLFNEYIDNQLVLDLDGVQDPGNLG 108

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +  + ++  G++  +    ++         H     
Sbjct: 109 TIIRIADWFGIENIFCSHETADCWNPKVVQATMGSIARVKLHYLNLN---ELIDHLPIDY 165

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALN 264
            I  +      +  +  +    +++G EGKG+  + +        +          ++LN
Sbjct: 166 PIYATLLDGNNIYSQELSHHGMIVMGNEGKGISSQLRTKINRKLLIPNYPPERETAESLN 225

Query: 265 VSNAAAVALYITQNH 279
           V+ A ++     +  
Sbjct: 226 VAIATSIVCAEFRRR 240


>gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 285

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 86/268 (32%), Gaps = 17/268 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   +++++ +   +  S    L L G H +  AL N S     +  +K        
Sbjct: 6   SRRNPLVRRLRALST-PKGRSIESLLLLEGTHLLEEALKNGSIPEEIIATSKWLENHSRI 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              LP       V    + +         G+A   +    P L    +  L++  D + D
Sbjct: 65  LEFLPKNVQFHLVTASVL-QASLTTVTPDGVASLLSLSALPKLKHSPDFILVL--DRLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES-------------AVLAKSASGALEHIPYI 190
           P N+G + R+A+A   D +       P                     + S  +     +
Sbjct: 122 PGNVGTLFRTALAADIDALWLALGADPLSQKVLRSSAGAVLKLPFERLADSEDIAIDGLV 181

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                           +     S     P  +        L+LG EG GL P+ Q   T 
Sbjct: 182 DKLRGVSQEGYQVVATYVAGKPSDFEVIPYWELDWIKPTVLVLGNEGSGLSPRIQACCTH 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              L     +++LNV+ AAA  L   + 
Sbjct: 242 GVTLPHSEAVESLNVAVAAAPLLLERRR 269


>gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 179

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ L   + P N G +LR       +  I      P       ++    L+ +   R  
Sbjct: 19  LMLALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHV 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + T         G + + LS+ + +P           L++G E  G+      +A +   
Sbjct: 79  SFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVV 138

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + +   +++LNV+ AAA+ L      
Sbjct: 139 IPLRPPMRSLNVAVAAAMVLGEALRQ 164


>gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           14579]
 gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis
           str. A2012]
 gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1]
 gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A1055]
 gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Kruger B]
 gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Vollum]
 gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Australia 94]
 gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Ames]
 gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           10987]
 gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Sterne]
 gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L]
 gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1]
 gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis
           BMB171]
 gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar
           anthracis str. CI]
 gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 162

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +         K +K    + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 158

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE+    R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +  M  +  + + LS+ +K    Q        L+ G E  G+     E A   
Sbjct: 61  HIDWQHFISSMKHFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPDYVHEAADYT 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++   A+         
Sbjct: 121 LKIPMQPQARSLNLAMCVAITTGEALRQI 149


>gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 155

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R  V       I  +         + ++     + +   R  + 
Sbjct: 3   IALFRPEIPPNTGNIARLCVNAGVPLSIVGEPAFDLSEKAVRRAGLDYWKDLELHRYPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
               ++  + G +   +S   KK       + K   + G E  GL  +  +   +  +  
Sbjct: 63  DWFQKEKETQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLPEEIHKGHPSDQIIS 122

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    +++N+SNA A+ LY     
Sbjct: 123 IPMAESSRSINLSNAVAIILYEALRQ 148


>gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
 gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
          Length = 254

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 14/244 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           + G   V A +     KI +L  T+       D    L     +  V  +   + +    
Sbjct: 11  VCGFEAVKALVKQHPEKISRLFFTQERAKAFGDASKYLAAKKRLYRVVEEADLEKLSLSV 70

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+       + P +D        ++S +++ LD V + +N+GAI+RSA  F    +I
Sbjct: 71  HHQGVVAMIEEPVIPLIDEQIIDGWAKDSAVVLFLDRVGNSNNLGAIIRSAAFFGIPAVI 130

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWGFQTIGLSSDSKKP 219
            T     ++    A   +        I  +          +   +          +    
Sbjct: 131 ITDEDPQAKITTSAYRVAQGGMEFVTIYHTRSIQWLLRACEGKITRIGADHRSFRNLNSL 190

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYIT 276
                 ++   +ILG E  GL   +++    +  +   G I++LNV+ A  +   AL   
Sbjct: 191 PTLLSPDEATMIILGNEETGLSEASKKACDHLVKIPGSGAIESLNVAQAGTLFLAALADI 250

Query: 277 QNHF 280
               
Sbjct: 251 HRQR 254


>gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 227

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L     +I +L   K    +  +   +     +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDRINELYLAKECD-KATFSKIVKSGLKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ S  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKEGSFANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQIGFYFYASDGSGKEIHNVKINNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221


>gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxidans DMS010]
 gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxydans DMS010]
          Length = 157

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLHIALFEPEIPPNTGNIIRLCANTGAQLHLIEPLGFALDDKRLRRAGLDY--HEFANLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +   A  +      +    ++ +++        D+  L+ G E +GL  +  +  TA  
Sbjct: 59  IHSDFAQFQQWQQQRRVFACTTKARQHHHDVQYQDEDILLFGPESRGLPAEVLDSLTAEF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA  + LY      
Sbjct: 119 KIRIPMLPDSRSLNLSNATGIILYQAWQQL 148


>gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42]
 gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42]
          Length = 273

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALARL 81
           N     + +   ++   T +       G   +  ++ A          ++L  +N +  L
Sbjct: 11  NDPRIAEFRDIRER-DLTGRENRFIAEGTVVLRMLAEAHAARRGFSAEKILLLRNRVDGL 69

Query: 82  DWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVL 138
                  P   PV     + +D +VG       LA         +  LDA+    L++V 
Sbjct: 70  QSVLERFPASVPVYVAEAKVLDGVVGFHLHRGVLALGKREDRGEAALLDALPERALVLVG 129

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 130 CGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPHRRGGKALDL 189

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +       ++AL++G EG+GL           A +    
Sbjct: 190 LLALAQRGFAIWTLSPHGKTDIRAIPAAARMALVIGTEGEGLPEALLARF-QSARIPQSD 248

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 249 QLDSLNAATATGIALF 264


>gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 157

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTWDDKRLRRAGLDY--HEFASIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     E   A  
Sbjct: 59  RHHDYQAFLDSEKPDRLFALTTKGTPAHSAVNYQDNDFLLFGPETRGLPASILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMQPNSRSMNLSNAVSVVVYEAWRQL 148


>gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 181

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + ++L ++   +N+G+I R+A A   + +I T   +      + K+A GA E + +
Sbjct: 24  EKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGAQETMAW 83

Query: 190 IRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              ++  + +  M   G       ++++S+   + +  +  + LILG E +G+     E 
Sbjct: 84  EYFAHPLEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFPLCLILGNEVQGIDDDILEQ 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   G   +LNVS AA VAL+    
Sbjct: 144 CDHILEIPQFGTKHSLNVSVAAGVALFEMVR 174


>gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
           [Xenopus (Silurana) tropicalis]
          Length = 278

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 10/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q S    +   ++L G H   A L    R    + +          
Sbjct: 10  SRDNAFVKDLRRLAQDSTAYRKQGRIWLEGDHLCRALLARGQRPAVAVFSASFWSLAQSQ 69

Query: 84  DANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
             +             +       I G EA             +        + +++  D
Sbjct: 70  SQSQSQYTQAAMKNIVLADALWADISGLEAPAPQGMGFVLDRAAAPALQPGVATVVL--D 127

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+G+ILRSA AF    ++  K  +   S  + ++  GA               L
Sbjct: 128 RLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVLRAGMGAHF----ALRLIEGGGL 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++ + G   +  SS     L +       A +LG EG+G+ P  +  A     +  PG 
Sbjct: 184 AQIRALGLPLLATSSHQGDYLHRAALPWPCAWVLGHEGQGVAPALEALAAQRIRIAQPGG 243

Query: 260 IKALNVSNAAAVALYI 275
            ++LNV+ AAA+ L+ 
Sbjct: 244 EESLNVAAAAAICLHA 259


>gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 178

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA 
Sbjct: 16  EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + +    N  DA+Q++H  GF       +   +     +   + K A+++G E KG++
Sbjct: 76  YSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + L+   N   K
Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V++   DP N+ A+LR+  AF    +   +            S +       
Sbjct: 40  NRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIEGPMKPYDRNKKISQNADKWVDV 99

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                     +  + L+      K+AL+ G E +G+  +    +
Sbjct: 100 RRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVFGNEHRGVSDEAVALS 159

Query: 249 TSMAHLHMPGIIKALNVSNAAAV 271
            ++  + M G +++LNVS AAA+
Sbjct: 160 DAVYVIPMHGFVQSLNVSVAAAI 182


>gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           weihenstephanensis KBAB4]
 gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
          Length = 162

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +         K +K    + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFNYSKREKDYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 156

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G++ R   A      +            L ++      H+     
Sbjct: 1   MIEVVLFEPEIPQNTGSVARLCAATKTPLHLIKPLGFSLADRYLKRAGLDYWPHVNLTVW 60

Query: 193 SNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            N                       +             AL+ G E +GL     +TA +
Sbjct: 61  DNFDAFRAARPQSRIVATTAGNRGHTPAAYHVFAYRPDDALVFGTESRGLPESLLDTAGA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + + G +++LN++NAA+V LY    
Sbjct: 121 RLRIPIWGQVRSLNLANAASVVLYEALR 148


>gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 302

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 43/293 (14%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H    +   + G  +V  A+   +  +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSH--DLQRFLVEGPQSVREAVRYVTDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKE-----AVHQGLALE 117
           K+A              R      L     V  V    + KI           +     +
Sbjct: 58  KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESNIMQKISADSQGIVAVANSKSLDD 117

Query: 118 TAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                   L      ++        +     V DP N GAI+R A    CD ++      
Sbjct: 118 IYFSEFKNLQQSAQVKVKNDFKSLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVDDCV 177

Query: 170 PSESAVLAKSASGALEH---------IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              +A L +S +G+L H           +   +     +     +G   I      K  +
Sbjct: 178 SRWNAKLVRSTAGSLFHLPVVQLSVQDWFECAAKANIRVIAADIYGTDKIKPVPFPKILV 237

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E+ +  +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 238 NSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 263

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 5/234 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + + G   ++ A+         L       +          P P   +  +  +K+ G
Sbjct: 30  GVILVEGARELARAVAAGLLP-TTLYTCAALYSPEAQAVVATLPGPRVPLAREAFEKVSG 88

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E       L   P  +P L  V  + +++VL  +  P NIGAILR+A A    G++   
Sbjct: 89  RENP--DGLLALVPTPAPRLPEVGEAGVVVVLHGLEKPGNIGAILRTADAAGAAGVLVLG 146

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +   S  + +++ G++  +P   +     AL  +       +  + D+ +        
Sbjct: 147 RGADVYSPNVIRASQGSVFTLPVANLEEA-AALAWLAEHRLTRVACTPDAPQVYWDAPLT 205

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++AL+LGAE +GL P  +  A     + M G   +LNV+ AAA+ LY      
Sbjct: 206 GRVALVLGAEHEGLPPAWRA-AEMPVRVPMHGTADSLNVATAAALVLYECVRQR 258


>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
 gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
          Length = 250

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 78/242 (32%), Gaps = 17/242 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H +   L   +    +++AT+  L      A L      + V  + +   +    
Sbjct: 2   LLEGTHLLQEVLRQGNAP-EEIIATEAWLQGHSAMAELCSQARWRIVTDEVLRAALTTVT 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 +     L            L+VLD + DP N+G +LR+A+A   + +       
Sbjct: 61  P---DGVACLSPLDRLPTVPPELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVD 117

Query: 170 PS-------------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           P              +        S A+     ++      +               +D 
Sbjct: 118 PLGTKVLRASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKADP 177

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             P          AL+LG EG GL P  Q   T    L     +++LNV++AA   L   
Sbjct: 178 PSPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLLER 237

Query: 277 QN 278
           + 
Sbjct: 238 RR 239


>gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c]
 gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae]
 gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae]
 gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c]
          Length = 412

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61
            K +H  KL+    + K     NQKS  +                    +YG ++V AAL
Sbjct: 81  KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111
            NPSR     L     +               + V    ++ +      +          
Sbjct: 137 LNPSRNCHSRLLYHGTIPSKFLQIVDELKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196

Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                           L   T    +   L + LD + DPHNIG
Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194
           AI+RSA     D I+ ++R     + V++K++SGA                         
Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   ++   +     + S   L        + L++G E +G+R   +  +     +
Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376

Query: 255 HMPG----------IIKALNVSNAAAVAL 273
              G          I+ +LNVS A A+ +
Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB]
          Length = 412

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 74/329 (22%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-------------LYGVHTVSAAL 61
            K +H  KL+    + K     NQKS  +                    +YG ++V AAL
Sbjct: 81  KKKAHVEKLK----EIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSVYAAL 136

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH---------- 111
            NPSR     L     +               + V    ++ +      +          
Sbjct: 137 LNPSRNCHSRLLYHGTIPSKILQTVDELKVTTELVDKHRLNLLTNYGVHNNIALETKPLQ 196

Query: 112 -----------------------QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                           L   T    +   L + LD + DPHNIG
Sbjct: 197 PVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITDPHNIG 256

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--------------LEHIPYIRISN 194
           AI+RSA     D I+ ++R     + V++K++SGA                         
Sbjct: 257 AIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGW 316

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                   ++   +     + S   L        + L++G E +G+R   +  +     +
Sbjct: 317 TFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEI 376

Query: 255 HMPG----------IIKALNVSNAAAVAL 273
              G          I+ +LNVS A A+ +
Sbjct: 377 PFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 157

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + +S L +VL     P N G+I R   A      +        +   L ++      H+
Sbjct: 3   PMDSSALHIVLVEPEIPPNTGSIARLCGATDTVLDLVHPLGFQIDDKHLKRAGLDYWPHV 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                 +L   LQ+        +   +       +    D+  LI G E KGL  +    
Sbjct: 63  RINHWDSLDAFLQQADERHLHFLTTKTKRSYTEARFCPGDR--LIFGKETKGLPEEILTL 120

Query: 247 TATSMAHLHM-PGIIKALNVSNAAAVALYITQNHFAK 282
            +     + M    I++LN++ AA + LY       +
Sbjct: 121 YSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQIRR 157


>gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 286

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 103/270 (38%), Gaps = 23/270 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DA 85
           D++ + S + +         + + G   V   L++    +  ++  +  L+ L      A
Sbjct: 18  DFRDLNSSDSRPDLPGGKGLVIVEGSLVVPRLLSSGY-PVRSVVGFEGKLSVLQDVTCSA 76

Query: 86  NLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLD 139
             P   PV   V  + + ++ G + +H+GL      +   T+     D      ++ +L+
Sbjct: 77  AQPAGGPVVYQVSREVLREVAGFD-MHRGLVAAADRIPERTVPEVLADIPAGPSVIAILE 135

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  NIGA+ R+A     D ++     +        + + G +  +P+ R S  T   
Sbjct: 136 GVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMGHVLRVPWARFSGKTTNW 195

Query: 200 QKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
           Q       +                         ++ +  +IA+++GAEG GL       
Sbjct: 196 QHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIAIMVGAEGPGLTEHAMRA 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A   A + M     +LNV+ AAA+  Y ++
Sbjct: 256 ADMRAKIPMMPGTDSLNVATAAAIGFYASR 285


>gi|158425126|ref|YP_001526418.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158332015|dbj|BAF89500.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 156

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ L   +   N G  LR+         I      P  +    ++    L+ + + R +
Sbjct: 1   MILALYCPDIAQNTGTCLRTGACLGVPVHIIEPAGFPVSAPAFRRAGMDYLDAVEWQRHA 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +     +     G + +  ++    PL          L+ G E  G   +    A +   
Sbjct: 61  SFAAFERWRREEGRRLVLFTTKGATPLPAFTFQPGDVLLFGRESAGAPEEVHAAADARVK 120

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + +   +++LNV+ +AA+AL        
Sbjct: 121 IPLRPGMRSLNVAVSAAMALGEALRQTN 148


>gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis]
          Length = 327

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 1/150 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186
             R   + +V++ + D  NI A++R+A A     +   T   +         S       
Sbjct: 126 MNRTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWL 185

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 +                +    +    +         A++LG E +G+  +  +
Sbjct: 186 DIEQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIVLGNEHRGISGEALK 245

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +     + M G++ + NVS AA + ++  
Sbjct: 246 FSDIKCSIPMTGMVDSFNVSVAAGIFMHAA 275


>gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group]
 gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 343

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+    + ++ +         +       +   ++    S  L+V    +  +   A   
Sbjct: 113 VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 166

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +         + +   +         S          +  S                   
Sbjct: 167 ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 226

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +    +     +   A+++G E  G+     + +     + M G++ + NVS AA + 
Sbjct: 227 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 286

Query: 273 LYIT 276
           ++  
Sbjct: 287 MHHA 290


>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 95/240 (39%), Gaps = 5/240 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQ 99
                          +  ALN  ++ +  L+  K     +  +   +L     V      
Sbjct: 29  FEPNGGVFIAETPEVIKRALNRGAKALAFLVEAKAYDTDVVRELLVDLDDDTTVFVAALN 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            I+ I G       LA    P L    + + N++ + +L+ V +P N+GAI RSA A   
Sbjct: 89  VINNITGFNLTRGVLAACRRPALPDPKELLANTKRIAILEDVMNPTNVGAIFRSAAALGV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + +  T   +       A+ + G +  +P+      +D +  +H  GF+ + ++      
Sbjct: 149 EAVFLTHPSADPFYRRAARVSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALKENAI 208

Query: 220 L---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +    DK+A++ G E  G++  T   +  +  + M   + +LNV+ A+AV  +  
Sbjct: 209 PLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268


>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L+++LD+V   +NIG++ R++ AF  + +      +   +A + K+A GA 
Sbjct: 16  EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLR 241
             + ++   +  DAL+ +   GF    +    +  +       K    A++LG E KG+R
Sbjct: 76  NSVDWVYYEDTRDALRGLKDRGFTICAIEQAERSIMLDELVVDKAKGYAVVLGNEVKGVR 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +       +   G   +LNVS AA + ++      
Sbjct: 136 QEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQL 174


>gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score = 84.5 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 50/144 (34%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   +   N+G ILR+A  F     I      P   A L ++           R ++ 
Sbjct: 3   IALFQPDIAGNVGTILRTASCFGVPAHIIEPCGFPFGDAALRRAGMDYAARADVRRHADW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                  HS   + + L++     L          L+ G+E  G+ P     A     + 
Sbjct: 63  DGFSGWSHSTAGRLVLLTTAGATRLPDFAFAHGDILLFGSESAGVPPHVHAAAAERVAIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    + LNV+ AA +AL      
Sbjct: 123 MQPGFRCLNVAVAAGIALAEALRQ 146


>gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group]
          Length = 343

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+    + ++ +         +       +   ++    S  L+V    +  +   A   
Sbjct: 113 VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 166

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +         + +   +         S          +  S                   
Sbjct: 167 ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 226

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +    +     +   A+++G E  G+     + +     + M G++ + NVS AA + 
Sbjct: 227 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 286

Query: 273 LYIT 276
           ++  
Sbjct: 287 MHHA 290


>gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 227

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KTTFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
 gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
          Length = 150

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 57/144 (39%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G +LR     + +  I      P+      ++    L+ +  +R  + 
Sbjct: 3   IALYQPDIPQNTGTLLRFCACLNLEAHIIEPAGFPTSDRHFRRAGMDYLDQVTILRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +  +Q       + I L++    P  ++       L+LG E  G+  +    A +   + 
Sbjct: 63  SKFVQWRKEADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARVLIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ AAA+ +      
Sbjct: 123 MQPKMRSLNVAMAAALVVGEALRQ 146


>gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 227

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINKLYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
 gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
          Length = 160

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K    G + I  S    +   +        ++ G E KGL  + 
Sbjct: 56  YWSEVDIHYWEDLDALKSAYPGGRFIYTSKKVPRSYVEMEFTAGDFIVFGKETKGLPDEL 115

Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E    +   + + G +++LN+S AA + LY     
Sbjct: 116 IEANPDTAVRIPIFGRVRSLNLSTAAGIVLYEALRQ 151


>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
 gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
          Length = 154

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++   L ++       +    
Sbjct: 1   MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +         +      +  +         D   L+ G E KGL P+     +  
Sbjct: 61  HDSFEELKALYPDGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPPELLAANSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   +++LN+SN+AA+ +Y       
Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIMVYEALRQLN 149


>gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM
           17629]
 gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1]
          Length = 167

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++  +             ++ G E  G+ 
Sbjct: 50  GMDYWKDLDVTTYVDWEDFLERNPGAKIYYATTKGRHVYSDAHFEPDCYIMFGKESAGIP 109

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   E       + M G  ++LN+SN+ A+ LY     
Sbjct: 110 EEILKEHPDECIRIPMIGETRSLNLSNSVAIVLYEALRQ 148


>gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
 gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
          Length = 248

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 53  GVHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G + V   L     +  ++  + T+ +   +            +  VP   +D++     
Sbjct: 10  GRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRSDLDRLSA-NG 68

Query: 110 VHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +HQG+AL+  P      D         + + LL+ LD++ DP N+GA++RS  AF   G+
Sbjct: 69  MHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSVAAFGGHGV 128

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q +GL +     L++
Sbjct: 129 VIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDAGGDTTLDE 188

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + +++G+EGKGL    +E   ++  + M G +++LN S AA V L       
Sbjct: 189 FDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRR 246


>gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
 gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 154

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLAKVSRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            N  D L  +                            L+ G+E  GL    +    +  
Sbjct: 61  KNYQDFLAAIPGQRIFACTTKGSRPYDQPT--YQPGDVLLFGSETSGLPDAIRNGFESDF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  Y     
Sbjct: 119 RIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147


>gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
 gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CNEVA-9066]
 gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
          Length = 162

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGIELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +         K +K    + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
 gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
          Length = 262

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 30/267 (11%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATK------- 75
            ++   QK ++     +  + G H V           AL +    +              
Sbjct: 5   DIKKLQQK-KYREAFGHYLVEGEHLVLELQKAASTQPALKSSELYVTAAYEHWQSPFTTH 63

Query: 76  ---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
                      D   P    +  VP +     +    V   +         P ++   + 
Sbjct: 64  LIGERQMARLADTQTPQGI-LAIVPIKV---PIIAPEVTPIVTPMAQSQERPAINTQHSP 119

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L  V DP N+G ILR+   F     + +       +  + +++ GA+ H+P    
Sbjct: 120 AKAIYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVDPYNPKVVRASMGAIFHLPLETD 179

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             L    ++ H      +   S ++         D    + G E +G+  +  +   + A
Sbjct: 180 VELASLSERFHRLACLDLNGRSLTEPG-----FADHDCYLFGNEARGIPAQALDELNATA 234

Query: 253 -HLHMPGIIKALNVSNAAAVALYITQN 278
             ++  G I++LN+++A  +  +    
Sbjct: 235 YTINGKGQIESLNLASAVNICSWELMR 261


>gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
          Length = 228

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 8/230 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +Y    +   +NN  +KI  L   K  L + ++   +   F +K +P +     + K A
Sbjct: 2   LIYAKQPIYYLINNYPQKIKTLYLAKE-LDKKEYSRLMKMGFEIKRIPNEA-AVKMSKNA 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   E             N   ++VL  + D  NIGAI+RSA A   D II +    
Sbjct: 60  NHQGFLAEVEDYKLHDYQTFLNKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSG--I 117

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +       S        + + N    L             +      + +     K 
Sbjct: 118 KHLNIEPLLRTSTGALFDMPLAVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL----YI 275
            L+LG EG+GL  +      ++  + M     +LNVS A A+ +    Y 
Sbjct: 178 VLVLGNEGEGLTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILMDRMRYE 227


>gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 178

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA 
Sbjct: 16  EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + +    N  DA+Q++H  GF       +   +     +   + K A+++G E KG++
Sbjct: 76  NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + L+   N   K
Sbjct: 136 QEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
 gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
          Length = 162

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +         K +K    + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 197

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 85/176 (48%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +    A+         P         +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 4   NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L    
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIA 179


>gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_39H11]
          Length = 232

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 4/229 (1%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+  + A+L+        L   +    RL    +      +        D     E    
Sbjct: 5   GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMAETSPA 64

Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                        +D +     L+ +L  V    N+G  +R A      G+I T  ++  
Sbjct: 65  LALALVGREPVADIDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSD 124

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +     +    A+    ++ +    D L  + SW  + + +     +          + L
Sbjct: 125 D---RHRIIRAAMRTNRFMPVVFGCDELAALKSWKGRVLAIEDVGTEEPWDADLTGDVIL 181

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           I+G E  G+  +  E A     + M G   + N+    AV         
Sbjct: 182 IIGGENAGVSKELLEAADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQR 230


>gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 250

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 13/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI 101
            Q + L + G   V A       +I +L  T    A+             P   V    +
Sbjct: 4   KQYQELAVCGFAAVKALEKEHPERIRRLYFTAERAAQFGDLCRFLSQEKIPYNKVETLDL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +K+ G    HQG+    A      L     +  +   +       +G             
Sbjct: 64  EKLCG-SVHHQGVVAMIAQPEIEPLTVEITADWVRGGESAVLLDRVGNANNLGAIVRSAA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
               +          +   + +              +++          G        + 
Sbjct: 123 FFGIRNIVIPLDEAQSSVTTSSYRVAQGGMEYVRVYSVRSAVRLLQDMSGKMVRFGTDVR 182

Query: 222 QEIKNDKIA---------LILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAV 271
                  +A         ++LG E  G+ P  +E    +  +      +++LNV+ AA++
Sbjct: 183 GAAPVSNMARLRAGKAALVVLGNEEAGISPLIRENCDHLIIIPAVNAAVESLNVAQAASI 242

Query: 272 ALYITQN 278
            LY    
Sbjct: 243 ILYELAK 249


>gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
 gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
          Length = 156

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N+GAILR A  FS    I          A L ++A          R +N 
Sbjct: 7   IALYQPEIAGNVGAILRLAACFSVPVDIIMPTGFAFSDAKLKRAAMDYGASADVTRHANF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +  + G + + +SS + + L          L++G+E  G+    ++ A     + 
Sbjct: 67  EAFDVRRRAEGRRLMLMSSHASQRLPDVEFRADDILLMGSESAGVPNAVRDLADVRVRIP 126

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LN++ +  +A+      
Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150


>gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
 gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
          Length = 264

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 1/157 (0%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                + A R   +  V++ + D  NI A+ R+A AF    +                 +
Sbjct: 59  QKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNIS 118

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239
            GA + +      N  + +Q + S G++           P+ +       A+I G E  G
Sbjct: 119 MGAEKWLDVEVWENTNECVQVLRSRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNG 178

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +    A    H+ M G++++ NVS AA + +Y  
Sbjct: 179 TSEEALALADVKCHIPMVGMVESFNVSVAAGILMYHI 215


>gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 166

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 9/162 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  + S L + L     P N G I R+  AF     +        +   L ++      H
Sbjct: 3   DPNKRSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     S+L    + +                            L+ G E  GL  K ++
Sbjct: 63  VDLSVHSDLDTFRKCLPLNHRLIGCSRFGGIPLRSM-RFQTGDVLLFGREDTGLPSKVRQ 121

Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
               +  + MP        G +++LN+S A A+  +      
Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQL 163


>gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 154

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YKDLNDFFEKNRDANVFYFSTKG--KQYYTQAPYTDNCYLMFGKETAGLPQWLIEQNIHK 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SNA A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNAVAIVLYEALRQL 148


>gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 239

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++ D+V+   N+ AI+R+A A     +           +    +         
Sbjct: 15  QRQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCVVGDKD-YRSFRGTALGSHRYVEV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +                        S +     +        L++GAE  GL     E A
Sbjct: 74  HRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEVDYTAPTVLLMGAEKNGLSADGLEAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++ NVS AA + L   ++  
Sbjct: 134 DIHITVPMVGMVESFNVSVAAGIILNEARHQR 165


>gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
 gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
          Length = 167

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        +   +    ++  +             ++ G E  G+ 
Sbjct: 50  GMDYWKDLDVTTYVNWDDFCEKNPNEKIYMATTKGRHVYSDVSYEPDCFIMFGKESAGIP 109

Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +    +   + M G  ++LN+SN+ A+ LY     
Sbjct: 110 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148


>gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 152

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 1/143 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL H   P N G + R   A      +        +   L ++      H+      
Sbjct: 1   MHIVLYHPEIPPNTGNVARLCAATRTQLHLIEPLGFSLDDRYLKRAGLDYWPHVNLSVWP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A         + +  S+ +   + +    ++ AL+ G E  GL  +  +       
Sbjct: 61  DW-QAYLDGPGSERRLVMTSARAGAAVHRFDFTERDALVFGPETTGLPAEVLDATPHHVR 119

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + + G +++LN+S A  + LY  
Sbjct: 120 IPIWGEVRSLNLSTATGIVLYQA 142


>gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 2037

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 2/175 (1%)

Query: 107  KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            ++ V      E    L P     +   +++V   + +P NI  + R    F+   I+   
Sbjct: 1853 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPD 1912

Query: 167  RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +        +A  +SA   +     +                       + +   +E   
Sbjct: 1913 KRVFEHPHFVAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFS 1972

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + A++LGAEG+G+             +   G+I++LNV  A AV +Y     
Sbjct: 1973 FPKRCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQ 2027


>gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2037

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 2/175 (1%)

Query: 107  KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            ++ V      E    L P     +   +++V   + +P NI  + R    F+   I+   
Sbjct: 1853 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPD 1912

Query: 167  RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +        +A  +SA   +     +                       + +   +E   
Sbjct: 1913 KRVFEHPHFVAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFS 1972

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + A++LGAEG+G+             +   G+I++LNV  A AV +Y     
Sbjct: 1973 FPKRCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQ 2027


>gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 245

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L ++L+HV  PHN+ AILRS  A                +       S     + 
Sbjct: 33  CRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFNSTAQGSQKWIPLK 92

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                 +     K   +      L  +++   + +   +  A +LGAE  GL        
Sbjct: 93  EHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCD-FCEPTAFVLGAEKWGLSKLATPLM 151

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA  L+      
Sbjct: 152 DEGIFIPMSGMVQSLNVSVAAATLLFEALRQR 183


>gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
 gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
          Length = 312

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   +L +++ + D  N+ A+ R+A A     +    R           +A       
Sbjct: 86  QNRTFSVLPIVEGLYDMGNLAAVCRTADALGYGAVHCINRGDVKYKVSQRTAAGADKWLD 145

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S          +         S S   +E+       A ILG E  G+  +    
Sbjct: 146 VKMWDSTAECLAAVRSAGYQIITTHLSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAA 205

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A + A + M G++++ N+S A+A+ +Y  +    +
Sbjct: 206 ADACAIIPMTGMVESFNISVASALIMYEARQQRLR 240


>gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter
           fragariae]
          Length = 218

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R+  L + L++++ P NI AI+R+A       I        S   +   +A        
Sbjct: 15  MRHPDLTVCLENLHKPRNISAIIRTADEVEIPQI-HAIWSKNSSKNLSTAAAGSNHWVRV 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +          +     +   ++      +        +ILG E  G+  +    A
Sbjct: 74  KNHATIENTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPNCIILGQEQTGISKQALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DH--NIPMMGMVQSLNVSVASALILYEAQRQR 163


>gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 227

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    +  +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRASSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
 gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
          Length = 157

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTTVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLPATILDALPADQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 159

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + L H   P N G I+R          I        +   L ++     E    I   
Sbjct: 1   MHVALFHPQIPPNTGNIIRLCANTGVKLHIIHPTGFVWDDKRLRRAGLDYAE-FAEITHH 59

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +          L++  K+ +     +    L+ G+E  GL  +          
Sbjct: 60  ENWSDFARYFPKESCIWALTTRGKRCVYDAAFSPNDVLLFGSETSGLTEEVHAEIAPEHK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    ++LN+SN+ A+ LY     
Sbjct: 120 LRLPMQACSRSLNLSNSVAIVLYEALRQ 147


>gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3]
          Length = 250

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 4/231 (1%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQTIDK 103
                + G+  ++  + +    I ++ +T     ++          PVK V   P + ++
Sbjct: 8   SNEFTVEGMSALAEFVRHKPSSIKRIFSTPKYKDKVTALVGKL-DIPVKIVEDRPSSDER 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                     +  ++   L   L   +  QL++ LDH+ DP N+GAI RSA  F    I+
Sbjct: 67  PTSPVYASVEIHYQSFSNLLSILGKSKQDQLVLALDHITDPRNLGAIARSAAFFGVKYIL 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +     ++ GA      + + NL  AL+K+   GF  I   +  +K  +  
Sbjct: 127 IPKMRQVLLTPASVATSQGAFAFSELVLVPNLGQALEKLKEEGFWVICADAKGEKFEKVI 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVAL 273
            +  K+ L+LG+E KG+    ++ +  +  +        +LNVS AA + L
Sbjct: 187 GEYQKVVLLLGSEDKGVSELLKKRSDRVVSISTDTQTLDSLNVSVAAGILL 237


>gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 27/277 (9%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           ++   +  ++  Q+         +     + GV  +S A+ +       +   +  L++ 
Sbjct: 4   RVSSRNARFQVWQALLSNRNKRQRAGEFLVQGVRPISLAVEHGWTVNTLIHDAERPLSQW 63

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D         + +    +   + ++   + LA+   P             L +V D  
Sbjct: 64  ARDLLQNQQSTERVLMAPGLLAELTEKDEAEILAVVAMPPDDLERIEAGPDFLGVVFDRP 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-----HIPYIRISNLT 196
             P NIG+I+RSA AF  DG+I T   +        ++++G+L       +P  R     
Sbjct: 124 TGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRVPSQREVMEW 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A ++        +G        +          L++G E  GL    +E A  +  + M
Sbjct: 184 VAARRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAWKELADELVRIPM 243

Query: 257 PGI-----------IKALNVSNAAAVALYITQNHFAK 282
            G                         LY       +
Sbjct: 244 TGAASSLNAANAATA-----------VLYEASRQRGQ 269


>gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           M50/1]
 gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           XB6B4]
          Length = 167

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++  +    +        ++ G E  G+ 
Sbjct: 50  GMDYWSELDVTTYVNWDDFCEKNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIP 109

Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +    +   + M G  ++LN+SN+ A+ LY     
Sbjct: 110 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148


>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + A + ++     E       
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANSGAQLHLIEPLGFPLDDAKMRRAGLDYHEFATMKVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            N  D L+KM     +    ++                 I G+E KGL P+         
Sbjct: 61  KNWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDMFIFGSETKGLSPEIHAFFQDGH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ A+A+Y     
Sbjct: 121 RVRLPMRPDNRSLNLSNSVAIAVYEAWRQ 149


>gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
 gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
          Length = 158

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFIEYLQRERGSFRVFACTTKTTQHHVDAQFQPGDVLLFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614]
 gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614]
          Length = 157

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 50/144 (34%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR A        +      P   + L ++    LE    +R  + 
Sbjct: 4   IALYQPDIPQNTGTILRLAACMGVTVHLIEPAGFPISDSALKRAGMDYLERAAMVRHISF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   S   + + L++ S  P           L++G E  G+       A +   + 
Sbjct: 64  AAFDDWRRSERRRLVLLTTKSDLPYADFTFETDDILMMGRESSGVPEDVHALADARLTIP 123

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ +  + L      
Sbjct: 124 MADGMRSLNVAVSTGMVLGEALRQ 147


>gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
 gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
          Length = 698

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 87/267 (32%), Gaps = 22/267 (8%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-----NA 77
            R+     K ++ +  K     + +   L+G+H V  A+ +  R    +   K     + 
Sbjct: 18  FRKAKMAKKSVEKYKAKKIEIPEIKGEALFGLHAVLEAIRSGKRDFHSIYLKKAIEDSDT 77

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
             R             +++    +D++   + +H G+ ++                  + 
Sbjct: 78  RIREILQIIQELGIKKESLTDDQLDRLTEYQ-LHNGICMDA---SPLNFSNFETKNFSIF 133

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V DP N+GAI RSA  F  DGI   K   P         +S        ++      
Sbjct: 134 VDRVLDPGNLGAIGRSAWYFGADGICLVKGRGPKTITPSMIKSSCGALEHLPVQQFENFH 193

Query: 198 ALQKMHS--------WGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA 248
             +                     +        E K  K   ++LG EG G+  +     
Sbjct: 194 EFRDSIKLNSGELVATCDPLAAEKAGITVKSLNEWKPKKTVGIVLGDEGVGISKEILNFC 253

Query: 249 TSMAHL-HMPGI---IKALNVSNAAAV 271
            ++  +         + +LNVS  AAV
Sbjct: 254 DTVISIAPTREHQSSVTSLNVSVVAAV 280


>gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56]
          Length = 274

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS--RKIFQLLATKNALAR 80
           +     + +   ++   T +       G   +  ++ A       R    LL        
Sbjct: 12  DDPRVAEFRDIRER-DLTGRENRFIAEGTVVLRMLAEAHAQGRGFRAEKILLLRNRVEGI 70

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVL 138
           L      P   PV       ++ IVG       LA         +  LDA+    L++V 
Sbjct: 71  LPILERFPADVPVYVAEADALEGIVGFHLHRGVLALGRREERDEAALLDALPERALVLVG 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDL 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +       ++AL++G EG+GL           A +    
Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRVIPAAARMALVVGTEGEGLPAALLARF-QSARIPQSD 249

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 250 ELDSLNAATATGIALF 265


>gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1]
 gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax]
          Length = 314

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 55/303 (18%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------AR 80
            K+ +  + ++    + +  ++YG+++VS+ L    R I  +L  ++            R
Sbjct: 16  IKRNKFLDAQA----EHDLDYVYGINSVSSVLVKNERTIHSVLVNQHIRLNKKTRKQAYR 71

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVG-------KEAVHQGLALETAPLLSPTLDAVRNSQ 133
             +D       P++T   + +D +VG                      L       +   
Sbjct: 72  YIFDTLKERGIPIRTTSKRKMDDLVGGFPHNDIIMQTSYRTMKRAKHFLKDYPQKGKQKS 131

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---------------- 177
           + + L  V D  NIG I RS   F  D I   K+    +                     
Sbjct: 132 IYICLHDVYDNMNIGNICRSIFFFGGDSIFLKKKKKKKKLQEKLLQMKIDTPVLHSSVGT 191

Query: 178 ----KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
                             + +    +         +       +    +  KN+K  +IL
Sbjct: 192 SEFLDFFHVNDMLSFMDDLKSCGFKILSTCCRLDNSSTNDRLQELANVRLSKNEKAFIIL 251

Query: 234 GAEGKGLRPKTQETATSMAHLHM-------------PGII--KALNVSNAAAVALYITQN 278
           G E KGL  +  + + +  ++                G     +LNV+NA A+ L+   +
Sbjct: 252 GNETKGLSKEILDRSDACIYISGHHTEEASTPALNSNGNFTLDSLNVNNACAILLHHFAS 311

Query: 279 HFA 281
           H A
Sbjct: 312 HLA 314


>gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
                 +       +                +    + G E +GL  + ++  T      
Sbjct: 64  EACCAALAGRRMFALTTKG--SARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 122 LPMMPNNRSLNLSNSAAVLLYEAWRQ 147


>gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
 gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
          Length = 164

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E   + ++     E+    R 
Sbjct: 1   MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L+       +   +++ S  P           L+ G+E KGL P+ +       
Sbjct: 61  ASWDAFLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_59C08]
          Length = 234

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 4/229 (1%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+  + A+L+        L   +    RL    +      +        D     E    
Sbjct: 7   GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMAEKSPA 66

Query: 113 GLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                        LD +     L+ +L  V    N+G  +R A      G+I T  ++  
Sbjct: 67  LALALVGREPVADLDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSD 126

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +     +    A+    ++ +    D L+ + SW  + + +     +          + L
Sbjct: 127 D---RHRIVRAAMRTNRFMPVVFGCDELEALKSWKGRVLAIEDVGTEEPWDADLTGDVIL 183

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           I+G E  G+  +  E A     + M G   + N+    AV         
Sbjct: 184 IIGGENAGVSKELLEVADQTIRIPMAGFTPSYNLQAPMAVVAVEALRQR 232


>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
           SC2]
 gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
           SC2]
          Length = 154

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++ A L ++       +    
Sbjct: 1   MPLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             +  +  +K  +  F      +  K+        D   L+ G E KGL P+       +
Sbjct: 61  HESFAEVQEKYQAGRFFYATTKA--KQQYSDIKFQDGDFLVFGKETKGLPPELLAANPDT 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+AA+ +Y      
Sbjct: 119 CIKMPMSDKVRSLNLSNSAAIIVYEALRQL 148


>gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 271

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 6/252 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +    +  ++  +K     Q       G   + + L +       LL     L  +    
Sbjct: 12  DDPRLEAYRNIREKDLVGRQH-QFIAEGKVILLSLLRSKEFSTLSLLVVAARLLSIMPIL 70

Query: 86  NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHV 141
               P  P+  VP + +D I G       L +     L      L  +    L+ VL  +
Sbjct: 71  KETKPTCPIYCVPQKIMDDIAGFHVHRGMLGIGERKKLPLLKEFLQNLPEKALISVLCGI 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++  N+GAI R+A AF+  GII  K           + ++GA  ++PY +  ++   +  
Sbjct: 131 SNHDNMGAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIVTA 190

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +  F    LS  + + L+        ALI G EG GL     + +     + M     
Sbjct: 191 LSNANFHLYALSPSASRYLKDAKATKHTALIFGTEGNGLPAHILQKS-ETLRIPMAYGFD 249

Query: 262 ALNVSNAAAVAL 273
           ++NV+ A+ +AL
Sbjct: 250 SINVATASGLAL 261


>gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
 gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
          Length = 303

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 90/268 (33%), Gaps = 21/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANL 87
           Y K+     +S    +           +  A+      +  LL       L  L      
Sbjct: 20  YTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWLEQLTPLLDKVAD 79

Query: 88  PH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--------LDAVRNSQLLM 136
            H     PV       ++++ G       LA    P L+            A      + 
Sbjct: 80  AHPELEIPVFVGAMDLLEQLTGFSVTRGALAAFRRPPLADPGAFLDGLVERADGRPVRVC 139

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +  
Sbjct: 140 VLEGIVDHSNVGAIFRSAAALNVDGILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGSEA 199

Query: 197 DALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETA 248
            A                S      +    +D         A+ +G EG GL+ +T    
Sbjct: 200 RAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTIAGC 259

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M   + +LNV+ A+AVA +  
Sbjct: 260 DKTIRIPMAHGVDSLNVAAASAVAFWQL 287


>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 250

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 22/259 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + +  K+++  +   +   +     + G+     A++   R+    + T         D 
Sbjct: 5   SQKLLKEIKKLH-SPQGRKKSIYYIIEGLRCCDEAISRLPREDIIAIVTTGDRIDYPIDK 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     +  + ++++   +     L    A     + D V     ++VLD + DP 
Sbjct: 64  K-------YILSEKDLNELTQTQNSQGVL--ILAKKKDTSSDFVFKDDFILVLDRIQDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ILR+A+A     I+         +    ++  GA   + +    NL+         
Sbjct: 115 NIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLK 174

Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA----HLHMPGII 260
             +    +         E        L+ G E  G+                 +     I
Sbjct: 175 ERKIWLTTPHEGVSCYSEEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSNI 227

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ AA + L+     
Sbjct: 228 ESLNVAQAATIYLFEGLRQ 246


>gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           LMA3894-4]
          Length = 158

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFIEYLQRERGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 162

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   L + L   +   N G ILR +        I            L ++    LEH 
Sbjct: 1   MEQRMPLHIALFQPDIAGNTGTILRLSACLGVHVHIIEPAGFNLSDRNLKRAGMDYLEHA 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              R  +    ++ M  +  + + LS+ +K             L+ G E  G+     E 
Sbjct: 61  LLERHIDWQHFIETMRHFNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVPNYVYEA 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M    ++LN++ + A+         
Sbjct: 121 VDHTLTIPMQPHARSLNLAMSVAITTGEALRQI 153


>gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 214

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++++V+ PHN+ AILR+A A                +       S    ++  
Sbjct: 16  RQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPTFHDTSGGSEKWVYLRV 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                      K   +      L S+      +       A++LGAE  G+ P+  E A 
Sbjct: 76  HPNVEAALEHLKGRGFTVYAANL-SERAVDYREVDYTRPSAVLLGAEKWGVSPRAAELAD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G++++LNVS AAAV L+  Q   
Sbjct: 135 ADVIIPMMGMVQSLNVSVAAAVILFEAQCQR 165


>gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 227

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L      I +L   K    ++ +       F +K +  +T  +   K  
Sbjct: 2   IVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I      
Sbjct: 60  NHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKL 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K 
Sbjct: 120 AME--GVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGKK 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 178 VLVLGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAFAILC 221


>gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 269

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 9/258 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81
            +       +   ++   T +       G   V   L +       +  L+A K      
Sbjct: 9   PDDPRIAAFRDVKER-DLTGRHGLFIAEGE-VVLRVLASEASRCTPVSILIAEKRLEKLW 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           +    LP    V       ++ + G      V               LD++    + +V 
Sbjct: 67  EVLERLPGDVTVHMASQAVLNAVAGFDLHRGVLALGRKPEPVEPGALLDSLPERAVAVVA 126

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + +  N+G + R+A AF    ++  +           + + GA+   P          
Sbjct: 127 CGIGNHDNMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMAMGLEAEAM 186

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  +   GF+ + L+  +++ L +     + AL+LG+EG GL             + M G
Sbjct: 187 IDLLQGRGFEVLALTPSAEQTLAELKPGRRTALLLGSEGPGLPRDIIARC-RPVGIRMAG 245

Query: 259 IIKALNVSNAAAVALYIT 276
              +LNV+  +AVAL+  
Sbjct: 246 GFDSLNVAATSAVALHHL 263


>gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3]
 gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3]
          Length = 169

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    +      +VL     P N G ++R          +      P + A L ++
Sbjct: 1   MQSRKHFKQLETHMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                E+       +    + +      +    ++                 + GAE +G
Sbjct: 61  GLDYHEYAQMQVHRDWDAFIAREQPDPARLFAFTTRGSGRFHDHAFTPGDWFVFGAETRG 120

Query: 240 LRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     E         L M    ++LN+SN  AV ++     
Sbjct: 121 LSESMLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 162


>gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 158

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ P           L+LG E  G        A +   + M   +++LNV+  AA+ L 
Sbjct: 87  HAETPHIHFAFEPNDILMLGRESAGCPESVHAQADARITIPMRPGLRSLNVAVTAAIVLG 146

Query: 275 ITQNHFAK 282
                  +
Sbjct: 147 EALRQTNQ 154


>gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
 gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
          Length = 154

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I R   A +    +  K     +   L ++     + +   
Sbjct: 1   MKTFNIVLIEPEIPPNTGNIARLCAATAATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLK 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
           R  NL    Q+     F  +          +         L+ G E  GL  +       
Sbjct: 61  RWENLEQLQQQHPEGRFWYLSTKVARNCYEQGI-YQPGDFLVFGKETAGLPAELLLANQE 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + MPG +++LN+SNAAAV LY     
Sbjct: 120 RCLTIPMPGQVRSLNLSNAAAVVLYEALRQ 149


>gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
 gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
          Length = 239

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 6/233 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108
           +YG++ +  A+    +     +  K    +L            P+        +   G  
Sbjct: 6   IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFERFNFKKNNQ-GVF 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+   +       + P +       LL++LD + D  N G+I+R++     D II +   
Sbjct: 65  AIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAIIISN-- 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   ++   K++SG L  +P  +  N+   ++ + ++G Q I ++  +          + 
Sbjct: 123 NNIVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNP 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
            A ILG+E KG+         +   L  +   + +LNVS A    LY      
Sbjct: 183 TAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235


>gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
 gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
          Length = 158

 Score = 83.7 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  VAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 158

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                    +  GF+    ++ +              L+ G E +GL     ++  A   
Sbjct: 64  PAFLQYLNENRQGFRLFACTTKASGHHVDAQFQQGDVLLFGPETRGLPEDIIDSLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 LRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301]
          Length = 154

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++     E+      
Sbjct: 1   MFHIVLFEPEIPPNTGNIIRLCANTGAALHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            N       +       I           +     +   + G E +GL  + +   TA  
Sbjct: 61  ENWEACKASLTGKRLFAITTKG--STRHSEIQFKAEDVFVFGPETRGLPEEIRAEFTAEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN+AAV LY      
Sbjct: 119 RLRLPMLPDSRSLNLSNSAAVLLYEAWRQI 148


>gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 152

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G + R+         +        E   L ++     +H+      
Sbjct: 1   MHIVLVEPEIPPNTGNVSRTCAVTGTTLHLVEPMGFSIEERQLKRAGLDYWQHLNLQVHE 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           +L   L          +               +    L+ G E  GL             
Sbjct: 61  SLEHFLDYATDRNCWFLSTKGKQSYTD--IKYHKDDLLVFGRETAGLPDWLLARYPQKCV 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   +++LN+SN+ A+ LY     
Sbjct: 119 RIPMGPDVRSLNLSNSVAIVLYEALRQ 145


>gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15]
          Length = 242

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 85/257 (33%), Gaps = 31/257 (12%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSA---------ALNNPSRKIFQLLATKNALARLD 82
            ++  +QK ++     +  + G H V           AL      +        +  R  
Sbjct: 5   DIKKLHQK-KYRQSFGHYLVEGEHLVLELQKATDGQPALKASELYVTGAYEHWQSPFRT- 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        +  + + ++       QG+         P    +    + +    V 
Sbjct: 63  -----------HVISERQMAQLAD-TRTPQGILALVPMPERPAEPVLGEKAIYL--HEVQ 108

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+   F     + +       +  + +++ GAL H+P      LT    + 
Sbjct: 109 DPGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASMGALFHVPLETDVALTSLPDRY 168

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIK 261
            S     +   S + +        +    + G E +G+  +  +   ++   +   G I+
Sbjct: 169 QSLACLDLNGGSMASRG-----FREHDCYLFGNEARGVPREALDQLKAVPYSIQGQGQIE 223

Query: 262 ALNVSNAAAVALYITQN 278
           +LN+++A  +  Y    
Sbjct: 224 SLNLASAVNMCTYELMR 240


>gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
 gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
          Length = 156

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N+GAILR A   +    I          A L ++A          R +N 
Sbjct: 7   IALYQPEIAGNVGAILRLAACLAVPVDIIMPTGFAFSDARLKRAAMDYGAAADVTRHANF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   + G + + +S+ + + L          L++G+E  G+    ++ A     + 
Sbjct: 67  ETFDAVRRAGGRRLLLMSAHASQRLPDVRFKSDDVLLMGSESAGVPDDVRDLADIRVRIP 126

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LN++ +  +A+      
Sbjct: 127 MAPGFRSLNIAVSTGIAVAEALRQ 150


>gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 152

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A +    +        E   L ++      H+      + 
Sbjct: 3   IVLFEPEIPPNTGNIGRLCAATTTPLHLIEPLGFRLEDRYLKRAGLDYWPHLDLTVWPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                 + S        +              +  ++LG E  GL     E A  +  + 
Sbjct: 63  PSFCDSLPSGARLVASSARQGAAYHTVA-FRTEDYIVLGPESSGLPSAICEQAAELVRIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN++NA +V LY     
Sbjct: 122 IWGQVRSLNLANATSVLLYEALRQ 145


>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
 gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
          Length = 272

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 11/248 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALA 79
             N+R  K  +S   +S    +     + G+H +  AL   +     L    + T +   
Sbjct: 6   SPNNRYVKLARSLQDRS-WREKKGLYLIEGIHLLEEALQAGTSLEVVLHSPRIFTTSRGE 64

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQL 134
           +L         +    V  + +  I         +A+      +          + +  L
Sbjct: 65  KLVAGLQRA-GYQCLAVTEELMAGISTTMTPPGIVAVAPMQAKNLAELLAVTSPLHSPPL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++   + DP N+G I R+A+     G+I T+      +  + +SA GA   +P      
Sbjct: 124 FIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVVRSAMGATFRLPVAGGVE 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                +K+   G + +     +   L Q      +ALI+G+E  G  P+    AT    +
Sbjct: 184 PALLARKLQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSENHGPGPELLAAATERVGI 243

Query: 255 HMPGIIKA 262
            + G + +
Sbjct: 244 PLVGPVDS 251


>gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 160

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L   + P N G +LR       +  I      P       ++    L+ +   R  +
Sbjct: 1   MLALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHVS 60

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            T         G + + LS+ + +P           L++G E  G+      +A +   +
Sbjct: 61  FTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVVI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            +   +++LNV+ AAA+ L      
Sbjct: 121 PLRPPMRSLNVAVAAAMVLGEALRQ 145


>gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395]
 gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
 gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
          Length = 158

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 229

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L ++L+HV  PHN+ AILRS  A                +       S     + 
Sbjct: 17  CRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFNSTAQGSQKWIPLK 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                 +     K   +      L  +++   + +   +  A +LGAE  GL        
Sbjct: 77  EHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCD-FCEPTAFVLGAEKWGLSELATPLM 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA  L+      
Sbjct: 136 DEGIFIPMCGMVQSLNVSVAAATLLFEALRQR 167


>gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 266

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 102/282 (36%), Gaps = 28/282 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I      +I S +D              + +    +             G   V   L 
Sbjct: 7   RIDSPDDPRIASYRDI-------------RERDLIGR------QGRFVAEG-KVVLNVLF 46

Query: 63  NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + SR      LL         +  A +P   P+       +D I G   +H+G+      
Sbjct: 47  STSRFSAESVLLLENRVAGMEELLARIPEHVPLYVAGSAVMDAIAGFH-MHRGVLAIGLR 105

Query: 121 LLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               + D          L++ L  + +  N+GAI R+A AF  D I+             
Sbjct: 106 GEEDSADELITAPPARALVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKA 165

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            + + GA+  +P+ R  + +  ++ + + GF  + LS   ++ +E   +  + A++LGAE
Sbjct: 166 IRVSVGAVLKVPFARGGDASTLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAE 225

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G GL             + M     +LNV+ A A+AL+    
Sbjct: 226 GPGLPAALLARL-PSVRIPMRNDFDSLNVAAATAIALHRLWR 266


>gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 154

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYALHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++   +   +        L+ G E +GL  +  +      
Sbjct: 59  RHASFEDYLEKCKPKKVYACTTKGSQFHHEASYEAGDCLVFGPETRGLPDEMIQALPNDQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y +    
Sbjct: 119 RVRIPMQANSRSMNLSNAVAVFVYESWRQL 148


>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
          Length = 153

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      +VL     P N G+I R   A      +       ++   L ++     +H+ 
Sbjct: 1   MPQPPFNVVLVEPEIPPNTGSIARLCGATDTVLHLVHPLGFDTDDKHLKRAGLDYWQHVR 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
            +  SNL + L          +   +                LI G E KGL  +  E  
Sbjct: 61  IVHWSNLEEFLAAQDENRLYFLSKKTQRPYTA--ISFTPGDFLIFGRETKGLPAEILELY 118

Query: 248 ATSMAHLHM-PGIIKALNVSNAAAVALYITQNH 279
           A     + M    I++LN++ AAA+ LY     
Sbjct: 119 ADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151


>gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 266

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 6/241 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY        +    ++           +  AL +  R +  +LA   ++  +      
Sbjct: 15  ADYSHQTDVALRKAQGTEHGLYLAESALVLQRALRSGHR-VRSVLALGTSVDEIVELVG- 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P+ T     + ++ G       +A    P L    + + +++ +++L++V DP N+
Sbjct: 73  -EDVPIFTGDGSLLAELTGYVLHRGVIASMQRPPLPTPTELLTDARRIVILENVVDPTNV 131

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS      D ++ T++ S        + + G +  +P+ RI N  D    + + GF
Sbjct: 132 GAIFRSVAGIGADAVLVTEQCSDPFYRRAIRVSMGTVLQVPWTRIGNWADTRVLLTASGF 191

Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           Q                     +K+AL+LG EG GL  +  + A ++  + M   I +LN
Sbjct: 192 QIAALALEDGAVSLRDYAADAPEKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLN 251

Query: 265 V 265
           V
Sbjct: 252 V 252


>gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           SIP3-4]
          Length = 164

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
                 +       +                +    + G E +GL  + ++  T      
Sbjct: 74  EACCAALAGRRMFALTTKG--SARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157


>gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
 gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
          Length = 164

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E   + ++     E+    R 
Sbjct: 1   MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    +        +   +++ S  P           L+ G+E KGL P+ +       
Sbjct: 61  ASWDAFIDSCQPRRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 158

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +        ++ +K+            ++ G E +G+    
Sbjct: 56  YWHLVDLKVWESYEDFINGNPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDI 115

Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH----FAK 282
               A     + M  + ++LN+SN+AA+ LY         F K
Sbjct: 116 LNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFDFNK 158


>gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 274

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 100/263 (38%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS----RKIFQLLA 73
           A    +     + ++  ++   T +       G   +  ++ A          KI  L  
Sbjct: 7   AIDSADDPRIAEFRNIRER-DLTGRENRFIAEGTVVLRMLAEAHAQDRGFLAEKILLLRN 65

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRN 131
             + +  +     LP   PV       +D +VG       LA         +  L+A+  
Sbjct: 66  RVDGVMPILE--RLPADVPVYVAEADVLDGVVGFHLHRGVLALGRREDRGEAALLEALPE 123

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++V   +++  N G++ R+A AF  D ++  +           + + G++  +P++R
Sbjct: 124 RALVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVGSVLSVPHLR 183

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                D L  +   GF    LS   K  +     + ++AL++G EG+GL           
Sbjct: 184 GGKAMDVLLSLAERGFAIWTLSPHGKTDIRAIPASARMALVIGTEGEGLPEALLARF-HS 242

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A +     + +LN + A  +AL+
Sbjct: 243 ARIPQSEDLDSLNAATATGIALF 265


>gi|68065966|ref|XP_674967.1| RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56493872|emb|CAH94657.1| RNA methyltransferase, putative [Plasmodium berghei]
          Length = 296

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 92/278 (33%), Gaps = 7/278 (2%)

Query: 7   KKSEKIFSLK----DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           K  +KI  +K    ++ Y  + +  +  K +    +KS    +    F+    T+     
Sbjct: 18  KGQKKIDYIKKNGENNEYLSISKRSKLMKYIIRLRKKSNFRKKNNAFFVKDTKTIMNLSR 77

Query: 63  NPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           + +  +  +L+      +   D  N  +      +    +D +   +  +          
Sbjct: 78  DHNLTMEVVLSNSKTFLKYFKDKCNKLYYVNNDILNYIFLDSLKFMKGKNYDSVAIVKIP 137

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                   +  + L+ LD +   +N+G IL  A + + D I          +  +     
Sbjct: 138 NIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNVMDITR 197

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGL 240
           G    IPY   S          +     +  ++        +   N  I LILG E  G 
Sbjct: 198 GKHLFIPYNVGSYSELNKFCEQNNLVPIVAHTNGIAPQAFLKNLTNQGICLILGNESYGP 257

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  A     L M  +  +LNVS AA + ++  +N
Sbjct: 258 HKDIFSFA-KPICLPMHEMTNSLNVSVAAGIIIHYLKN 294


>gi|317507017|ref|ZP_07964783.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254684|gb|EFV13988.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 105

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-----KALNVSNAAAVALYITQNH 279
            +   A + G E  GL       A     + M         ++LN++ AA + LY T   
Sbjct: 44  LSGPCAWLFGNEAHGLPEPVARAADHRVAVPMRPAAGFAPPESLNLAVAAGICLYETARL 103

Query: 280 FA 281
            +
Sbjct: 104 RS 105


>gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
 gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
          Length = 239

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 6/234 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            ++G + +S  L    + I  +        +             K      ++KI G   
Sbjct: 7   IIFGKNIISLILKYYLKNIKIIFY--EKKKKYFIKKIKNKNLIFKKKNKIFLNKICGNNY 64

Query: 110 VH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                     ++    +   +   +  ++ ++L+ +N+ +N+G+ +R++ A + D II +
Sbjct: 65  HQGIVSIIKKIKINKNIKKIIKNKKKKKIFLILNKINNINNLGSCIRTSNALNIDLIILS 124

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K+     + ++ K++ GA    PYI++ ++   ++ +    F+ IG    SK  L     
Sbjct: 125 KKCINKNNKIILKTSLGANLITPYIKVKSIKKIIKYLKKKNFKIIGTWEKSKLNLFNFKF 184

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              I LI+G+E  G+    ++    +  + M G I  LNVS A  + LY    +
Sbjct: 185 PKLIVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSVATGIFLYEIIKN 238


>gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           RCH1]
          Length = 383

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +           D           V  Q +DK+     
Sbjct: 144 GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 201

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD            L++ LD V DP N G + RS  A    G+I
Sbjct: 202 GHQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 261

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  A  +   +       +  +       
Sbjct: 262 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 321

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 322 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 372


>gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1001]
          Length = 156

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A L ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +N    + K      +    ++                 + GAE +GL     E   +  
Sbjct: 61  ANWAAFIAKESPEPSRMFAFTTRGSGRFHDHAFAAGDWFVFGAETRGLPDSVLEQFGSEE 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  A+ ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 322

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 17/256 (6%)

Query: 41  RHTSQPENLFLYG------VHTVSAALNNP--SRKIFQLLATK-NALARLDWDANLPHPF 91
           R         L G       + V   L     +  ++  + T+ +   +           
Sbjct: 66  RGRQAAGRKVLDGPETVLGRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGI 125

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDP 144
            +  VP   +D++     +HQG+AL+  P      D         + + LL+ LD++ DP
Sbjct: 126 SILEVPRTDLDRLSA-NGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDP 184

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S
Sbjct: 185 RNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWAS 244

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q +GL +     L++   +  + +++G+EGKGL    +E   ++  + M G +++LN
Sbjct: 245 KGVQVVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLN 304

Query: 265 VSNAAAVALYITQNHF 280
            S AA V L       
Sbjct: 305 ASVAAGVVLADIARRR 320


>gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
 gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
          Length = 158

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFIDYLQRERETFRLFACTTKTTQHHVDAQFQQGDVLMFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 158

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE     R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFDLSDRNLKRAGMDYLERASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  + +  M  +  + + LS+ +K    +        L+ G E  G+     + A   
Sbjct: 61  HLDWQNFIDTMQRFNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPDYVYKAADYA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LTIPMLPHARSLNLAMSVAITTGEALRQI 149


>gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 249

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +           D           V  Q +DK+     
Sbjct: 10  GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 67

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD            L++ LD V DP N G + RS  A    G+I
Sbjct: 68  GHQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  A  +   +       +  +       
Sbjct: 128 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 188 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238


>gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 207

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 2/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R  +L +VL     P N G I R+         +        +   L ++     + +
Sbjct: 39  QDRTHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAGLDYWDKL 98

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                +N+ D   K     F                 ++  + +I G E  GL  +    
Sbjct: 99  DIYYYNNIEDFFAKNDGAYFFFT-TKGRQVHSEAVYPEDRPVYIIFGREDAGLPEELLYA 157

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M   +++LN+SN+ A+A Y     
Sbjct: 158 HPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 190


>gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           DP4]
          Length = 274

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +           D           V  Q +DK+     
Sbjct: 35  GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKL--YAG 92

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD            L++ LD V DP N G + RS  A    G+I
Sbjct: 93  GHQGVVARLFEAGYVELDDLLRDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 152

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  A  +   +       +  +       
Sbjct: 153 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 212

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 213 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 263


>gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118]
 gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118]
          Length = 356

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 116 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 174

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 175 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 234

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 235 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 294

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 295 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 350


>gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
 gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
          Length = 264

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                + A R   +  V++ + D  NI A+ R+A AF    +                 +
Sbjct: 59  QKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNIS 118

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239
            GA + +      N  + +Q +   G++           P+ +       A+I G E  G
Sbjct: 119 MGAEKWLDVEVWENTNECVQVLRKRGYRIAVTDMGADTVPIHELDWTIPTAVIFGNEHNG 178

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +    A    H+ M G++ + NVS AA + +Y  
Sbjct: 179 TSEEALALADVKCHIPMVGMVDSFNVSVAAGILMYHV 215


>gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
 gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
          Length = 221

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   +      + ++L    A      +      F +K +  + + + + K +
Sbjct: 2   IVYGKRIVEYIIQKHPDIVKEILI---AKKLNKNELKKFQNFEIKFIDNK-LAQKLSKNS 57

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   +         +       +++LD+V D  NIGAI R+A A   D +I T    
Sbjct: 58  NHQGFFAKI---EFTPQNWDIIGDKILILDNVTDMGNIGAITRTAYALGIDLLIITGINE 114

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                ++  S+  AL+    ++I ++ + L  ++    +   +         +  + +KI
Sbjct: 115 LKWDRIIRTSSGAALD----MKIISIKNILDVINILKTKGYLIVGADLGGKCKPSRKNKI 170

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ALILG EG+GL  K ++    +  + M     +LNVS AA + +
Sbjct: 171 ALILGNEGEGLNKKIKQKLDEVITIEMKREFDSLNVSVAAGILI 214


>gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 390

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 150 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 208

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 209 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 268

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 269 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 328

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 329 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 384


>gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
 gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
          Length = 256

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 9/236 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +       G   ++      +    +++  ++     D    +     +  +     
Sbjct: 24  YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDEKYEISRHDNLTILKDNLF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D++       +                      +++LD + DP N G I+R+ +A +   
Sbjct: 79  DEVS----TQENSQGIIFLYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQN 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I TK      +    ++    +  +  I  +              +      +     E
Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPENIVKFLNKKNYLKIATALHEDSVSYE 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +       A I G EG G+     E +   A + + G I++LNVS A  + LY  +
Sbjct: 195 KIELRKNNAFIFGHEGGGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
 gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
          Length = 156

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P +   + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           ++    + K      +    ++                 + GAE +GL     E  T   
Sbjct: 61  TDWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPDTVLERFTNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
 gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
          Length = 162

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +       ++  +L ++     +H+    
Sbjct: 1   MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQE-TAT 249
             ++ +  +K     F  +    +                 + G E  GL     E    
Sbjct: 61  YDSIEEFYEKNSDGEFFYLTKYGEKAHTQFDYSNVEKNYYFVFGRETNGLPANVIEENFD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   +++LN+SN AA+ +Y       
Sbjct: 121 HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 152


>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           Y412MC10]
          Length = 154

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++   L ++       +    
Sbjct: 1   MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +         +      +  +         D   L+ G E KGL  +     A  
Sbjct: 61  HDSFEELQALYPEGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPRELLAANAEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+AA+ +Y      
Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIMVYEALRQL 148


>gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 156

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + A + ++     ++      
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +  +  +     +   L++    P            + G+E KGL P  +E+   + 
Sbjct: 61  PDWSRFIATVQPDPQRMFALTTHGSTPFATGQFRPGDVFVFGSETKGLDPALRESFPPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 149


>gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 157

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS  A   D  +       ++  +L ++     + +      ++
Sbjct: 6   IVLYQPEIPANTGNIARSCAATDTDLHLIRPLGFSTDDKMLRRAGLDYWKFVNITYYDSI 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K     +             +    ++K   I G E  GL    +E    +   +
Sbjct: 66  EEFFEKNKGHYYLLTKFGKKPHTTFDYSNTDEKHYFIFGKETTGLPDWVKEKYMDTALRI 125

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN AA+ +Y       
Sbjct: 126 PMNDNVRSLNLSNTAAILIYEALRQQN 152


>gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
 gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
          Length = 164

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E   + ++     E+    R 
Sbjct: 1   MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L+       +   +++ S  P           L+ G+E KGL P+ +       
Sbjct: 61  ASWDALLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
 gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
          Length = 303

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 94/280 (33%), Gaps = 22/280 (7%)

Query: 19  HYAKLRRNH-RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--TK 75
           H A L       Y K+     +S    +           +  A+      +  LL     
Sbjct: 8   HVASLDDPRLEAYTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWL 67

Query: 76  NALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130
             +  L       H     PV     + ++++ G       LA    P +      +   
Sbjct: 68  EHMTPLFDVVAREHPGLEVPVFVGAMELLEELTGFSVTRGALAAFRRPPMPDARAFLDGL 127

Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                     + +L+ + D  N+GAI RSA A + DGI+ +           A+ + G +
Sbjct: 128 VDRAAGRPVRVCILEGIVDHSNVGAIFRSAAALNVDGILASPTCVDPLYRRSARVSMGTV 187

Query: 185 EHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDK-------IALILGAE 236
             +P+ RI        +             +      +    +D        +A+ +G E
Sbjct: 188 FQVPWTRIGTEARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSIERLAVFMGTE 247

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G GL+PKT         + M   + +LNV+ A+AVA +  
Sbjct: 248 GAGLQPKTIAGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287


>gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297]
 gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297]
          Length = 224

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             SD      +       ALILGAE  G+ P+  + A     + M G  ++LNVS A+ +
Sbjct: 97  HWSDRAISYREADYTRPFALILGAEKYGISPEAADAADEHLIIPMVGACESLNVSVASGI 156

Query: 272 ALYITQNHF 280
            L    +  
Sbjct: 157 ILQEAMHQR 165


>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 360

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 23/223 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133
               A      PV     Q +D +  +  VHQG+ +E +PL                  Q
Sbjct: 94  ELLRAAEARDIPVLRPRRQKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQ 152

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA+LRSA     D IIT+ R S   + V++K+++GA+E +      
Sbjct: 153 LWLVLERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTD 212

Query: 194 N-----------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +                  +   G +    S        + + +    L+LG EG GL  
Sbjct: 213 DLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQ 272

Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
             Q +   +  +     +P  +++LNVS AA + L+   +   
Sbjct: 273 AVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315


>gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           7169]
 gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
 gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           12P80B1]
 gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
 gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
 gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           101P30B1]
 gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           CO72]
 gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 181

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 8/155 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P+N G+I+R          +        +   L ++     E+       
Sbjct: 9   IHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHD 68

Query: 194 NLTDALQ------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           N  +                 T       +   + +    K+AL+ G+E  GL  + +  
Sbjct: 69  NWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRAD 128

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     L M    ++LN++N+  + LY      
Sbjct: 129 IGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQL 163


>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
 gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
          Length = 157

 Score = 83.3 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +      P +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDY--HEFANIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL  +  E   A  
Sbjct: 59  RHADYAAFIASENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 256

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 9/236 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +       G   ++      +    +++  ++     D    +     +  +     
Sbjct: 24  YRDENSIFKAEGEKFLNE-----NINFNKIIVKESKFEYFDERYGISEHDNLTILKDNLF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D++       +                      +++LD V DP N G I+R+ +A +   
Sbjct: 79  DEVS----TQENSQGIMFLYSKNLNTIEDVKGDVVILDDVQDPGNAGTIIRTMIAANFQN 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I TK      +    ++    +  +  I  +              +      +     E
Sbjct: 135 LILTKGSVDVYNPKTVRATMSGIFKLNIIYETPENIVKFLNDKNYLKIATALHEDSISYE 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    +  A I G EG G+     E +   A + + G I++LNVS A  + LY  +
Sbjct: 195 KIELRENNAFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group]
          Length = 298

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 7/133 (5%)

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             + D      ++      +   S+  A          N             + +  +  
Sbjct: 141 MVAWDLPSDPGKHWIDCEDMCCVSSWAASCRGKIHDSWNEFRDYFMKQDGEKRLLAFTKR 200

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNA 268
                          L+ G+E KGL     E  +          + M    ++ LN+S +
Sbjct: 201 GTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVS 260

Query: 269 AAVALYITQNHFA 281
             VALY       
Sbjct: 261 VGVALYEAARQLN 273


>gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN]
 gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN]
          Length = 239

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 6/233 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108
           +YG++ +  A+    +     +  K    +L            P+        +   G  
Sbjct: 6   IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFERFHFKKNNQ-GVF 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A+   +       + P +       LL++LD + D  N G+I+R++     D II +   
Sbjct: 65  AIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAIIISN-- 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   ++   K++SG L  +P  +  N+   ++ + ++G Q I ++  +          + 
Sbjct: 123 NNIVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNP 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
            A ILG+E KG+         +   L  +   + +LNVS A    LY      
Sbjct: 183 TAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235


>gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 171

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++  +    +        ++ G E  G+ 
Sbjct: 54  GMDYWSELDVTTYVNWDDFCEKNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIP 113

Query: 242 PKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +    +   + M G  ++LN+SN+ A+ LY     
Sbjct: 114 EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 152


>gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 156

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHVVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             N+     +     +      S +    +     +    + G E  GL    +E    +
Sbjct: 61  YENIEQFFDQTDGHYYLITKFGSTTFTDFDYSNPEEDHYFVFGRETTGLPDWVKEKYHDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   I++LN+SN AA+ +Y       
Sbjct: 121 ALRIPMNDHIRSLNLSNTAAILVYEALRQQN 151


>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
          Length = 517

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 125/346 (36%), Gaps = 75/346 (21%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNH--------------RDYKKMQSFNQKSRHTSQP--ENL 49
              + K   +KD++   + R+                + ++        R T +   E+ 
Sbjct: 157 SIDNPKWGRIKDNYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGEST 216

Query: 50  F-------LYGVHTVSAALNNPSRKIFQLLATKNAL-------------ARLDWDANLPH 89
                   +YGV  V AAL    R+ + L   +                           
Sbjct: 217 VPKMVGQGVYGVGPVLAALMAERREFYALYIQEGMDLSVSNKKKKDKKGIEKVLQLAERI 276

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142
              V       ++ +V     HQGL L+ +PL       +           + + LD V 
Sbjct: 277 GLKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 335

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L   
Sbjct: 336 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 395

Query: 203 HSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---- 257
              G++   G  +    PL + +  +   L+LG+EG GLRP  + + T +  +       
Sbjct: 396 AENGWRVLGGTVASKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 455

Query: 258 ------------------GI--------IKALNVSNAAAVALYITQ 277
                             G         +++LNVS AA V LY   
Sbjct: 456 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 501


>gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 160

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A      +       ++  +L ++     + +    
Sbjct: 1   MGIHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLRRAGLDYWQFVEINY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA-T 249
             ++ +  +K     F  +    ++          +K    I G E  GL  +  E    
Sbjct: 61  YDSIEEFFEKNEGGEFYYLTKYGENVHSGYDYSNKEKDYYFIFGRETTGLPDEVIENNKD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M    ++LN+SN AA+ +Y     
Sbjct: 121 RCLRIPMNNNARSLNLSNTAAILVYEALRQ 150


>gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 152

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +        ++ +K+            ++ G E +G+    
Sbjct: 50  YWHLVDLKVWESYEDFINGNPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDI 109

Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A     + M  + ++LN+SN+AA+ LY     
Sbjct: 110 LNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQ 145


>gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
 gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
          Length = 279

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 79/270 (29%), Gaps = 17/270 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  + +         L L G H +   L    +    +          D 
Sbjct: 8   SRRNPLVKRLRMLSSRP-GRDAEGLLLLEGTHLLQELLWIGGQPTELIATEAWFDRHADL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L      + V  + +   +          +     ++   +  +     +VLD + D
Sbjct: 67  IQALDASVVWRRVTEEVLGAALSTVTP---DGVACLCPITLLPEPPKTCDFWLVLDRIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKSASGALEHIPYI 190
           P N+G++LRSA+A     +       P              +                  
Sbjct: 124 PGNLGSLLRSALAADVQSVWMGSGVDPLGGKALRASAGALLQLPHRRFGPEQQQAIDDLD 183

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +   L  A                    P  +       AL+LG EG GL P+ Q   T 
Sbjct: 184 QALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGTEGAGLHPRLQACCTH 243

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L     +++LNV+ AA   L   +   
Sbjct: 244 AVTLPHSSRVESLNVAAAAVPLLLERRRAR 273


>gi|323451450|gb|EGB07327.1| hypothetical protein AURANDRAFT_60146 [Aureococcus anophagefferens]
          Length = 270

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 90/278 (32%), Gaps = 25/278 (8%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + +   ++     D+ K+     + +   Q   +FL G   V  AL   +     L+A  
Sbjct: 3   RSAAPRRIDSTKNDFVKLCKTLHRRKGREQTNLVFLEGQRLVGDALAAGAAPRTVLVADG 62

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
                L  D        V   P + +            +A+   P+++           +
Sbjct: 63  VDADGLPGD--------VVRAPLKVVAACCDTSTPQGVVAVVEKPVVAVPPSPT----FV 110

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V+DP N+GA++R+A A  CD +           +  +  A+        +     
Sbjct: 111 LALDGVSDPGNVGALIRTAAAAGCDAVAVVGAACADPWSPKSLRAAMGATFRVPVVEFRD 170

Query: 196 TDALQKMHSWGFQTI------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                 L+  ++        +    + +GAE  G+  +  E   
Sbjct: 171 DGWAGAAPRLRGDWDLSVRAADLAPGAEAYDAAPWADGGACVAVGAEV-GVSRELAELLD 229

Query: 250 ------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 S  ++ M   +++LN + A +  L   +   A
Sbjct: 230 GDDAGFSRVYIPMHADVESLNAAVAGSAILLEARRQRA 267


>gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 240

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 3   LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 61

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GA+LRS+  F   G++
Sbjct: 62  AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 122 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 182 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 237


>gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 353

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 116 LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 174

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GA+LRS+  F   G++
Sbjct: 175 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 234

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 235 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 294

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 295 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 350


>gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 303

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 66  LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 124

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GA+LRS+  F   G++
Sbjct: 125 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 184

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 185 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAA 244

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 245 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 300


>gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 158

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G+I+R          +        +   L ++      H  
Sbjct: 1   MSAFPLHIVLYEPEIPGNTGSIIRLCANTGAALHVIKPLGFEMDDKRLRRAGLDY--HEF 58

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +   + A  +  +   + + + +           ++  AL+ G+E KGL      T 
Sbjct: 59  ASVMQWESLAHYREQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETKGLPEAILVTL 118

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +  L M    ++LN++NA +V +Y     
Sbjct: 119 SRDHIVKLPMLPNSRSLNLANAVSVVVYEAWRQ 151


>gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
 gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
          Length = 149

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+A A      +            L ++      H+     
Sbjct: 1   MLHLVLFQPEIPQNTGNIARTAAALGWPLHLIRPLGFRLSDPRLKRAGLDYWPHVDLRLH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                  Q +           +     L          L+ G E +GL P+         
Sbjct: 61  DTWEAFWQSLPPGARVWAFS-ARGDTCLYGVSFQPGDYLLFGPETRGLPPEVLTLFPG-V 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ MPG++++LN++ A  VA Y      
Sbjct: 119 YIPMPGLVRSLNLAVAVGVAAYEAYRQL 146


>gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus
           scrofa]
          Length = 361

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 23/223 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133
                      PV     + +D +   + VHQG+ +E +PL                  Q
Sbjct: 94  ELLRVAEARDIPVLRPRRRKLDVLCRYQ-VHQGVCMEVSPLRPQPWAEAGESRPGDDPQQ 152

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           L +VL+ + DP N+GA+LRSA     + +IT+++ S   + V++K+++GA+E +      
Sbjct: 153 LWLVLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTD 212

Query: 193 ----------SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                              +   G +    S          + +    L+LG EG GL  
Sbjct: 213 DLAGFLQAKARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSR 272

Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
           + Q +   +  +     +P  +++LNVS AA + L+   +   
Sbjct: 273 EVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315


>gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group]
          Length = 263

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+    + ++ +         +       +   ++    S  L+V    +  +   A   
Sbjct: 33  VELTSREVLEVL------EPHIMEARRERIRRAVENRSYSVCLVVEGLSDFGNVSAAFRS 86

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +         + +   +         S          +  S                   
Sbjct: 87  ADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDIELWSSTAECFDALKKRGYRIATTY 146

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +    +     +   A+++G E  G+     + +     + M G++ + NVS AA + 
Sbjct: 147 LGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLSDLHCSVPMKGMVDSFNVSVAAGIL 206

Query: 273 LYIT 276
           ++  
Sbjct: 207 MHHA 210


>gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia HI2424]
          Length = 172

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               +   +VL     P N G ++R          +      P + A + ++     E+ 
Sbjct: 12  QPNRNMFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYA 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +    +        +    ++                 + G+E +GL  +  E 
Sbjct: 72  QMRVHRDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLER 131

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L M    ++LN+SN  AV ++     
Sbjct: 132 FPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 165


>gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea
           DSS12]
          Length = 154

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTCVTRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL  +  E+   + 
Sbjct: 61  KDFPSFLEAMDGKRIMACTTKG--SRPHSELSFKKDDVLLFGPETRGLPMEIIESLPTSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G+ ++LN+SNA A+  Y      
Sbjct: 119 RLKIPMAGMSRSLNLSNAVAIISYEAWRQI 148


>gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 135

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 85  ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 134


>gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + PHN+GA +R +  F  +  +        +   + ++A          R ++ 
Sbjct: 3   LALFQPDIPHNVGACIRLSACFDVELHVIQPTSFNFDDRAMKRAALDYGPLSHMTRHADW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +             +   +PL   +      L+ G E  G        A +  ++ 
Sbjct: 63  DAFQRDRAPGRLVLFTTRA--AEPLTDFVFQPDDVLLFGKESAGSPDYVHAAADARIYIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
           +    ++LN+S +A + L+       +
Sbjct: 121 IRPEARSLNLSVSAGIGLHEALRQMNE 147


>gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 9/158 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G+I R+  A +    +        +   L ++      ++     
Sbjct: 70  MLHVVLVSPMIPGNTGSIARTCAASAVGLHLVGPLGFHVDDTKLKRAGLDYWPYVVVKIH 129

Query: 193 SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +  +          Q      +                 L+ G+E KGL     E  + 
Sbjct: 130 DSWGEFRDYFMKQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFGSETKGLPESALEDCSG 189

Query: 251 ------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                    + M    ++ LN+S +  +ALY       
Sbjct: 190 EAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLN 227


>gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia MC0-3]
          Length = 156

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens KN400]
          Length = 164

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +    +VL     P N G I R   A      +  K    ++   L ++       +
Sbjct: 1   MTGHQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L    Q      F      +   +       ++   ++ G E  GL     + 
Sbjct: 61  DIRYWESLDQLRQAWPDARFFYTSKKA--ARCYVDAGFHEGDFIVFGKETVGLPEDLLQA 118

Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + + G +++LN+S AA + LY     
Sbjct: 119 NEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQ 151


>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 358

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133
                      PV     Q +D + G + VHQG+ +E +PL     D            Q
Sbjct: 123 ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 181

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E +      
Sbjct: 182 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 241

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242
           +L   LQ     G+  +G                     + + +    L+LG+EG GL  
Sbjct: 242 DLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 301

Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279
           +   +   +  +     +P  +++LNVS A  + L+   + 
Sbjct: 302 EVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 342


>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
 gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
 gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
 gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
 gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 320

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQ 133
                      PV     Q +D + G + VHQG+ +E +PL     D            Q
Sbjct: 85  ELLRVAEARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQ 143

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E +      
Sbjct: 144 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATP 203

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242
           +L   LQ     G+  +G                     + + +    L+LG+EG GL  
Sbjct: 204 DLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 263

Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNH 279
           +   +   +  +     +P  +++LNVS A  + L+   + 
Sbjct: 264 EVFASCQLLLTILPRRHLPPGLESLNVSVATGILLHSICSQ 304


>gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 180

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              + +L + L   + P N G ILR A        +            L ++    LE  
Sbjct: 18  YPHHMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRSLKRAGMDYLEQA 77

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              R ++             + + LS+ +  P       +   L+ G E  G+      +
Sbjct: 78  TLTRHADWHHFEDWRLQAKRRIVLLSTKAAIPYTDYRFQENDILLFGRESSGVPDNVHNS 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +   + M    ++LN++ + A+         
Sbjct: 138 ADARLLIPMMPGARSLNLAVSVAMTAGEALRQR 170


>gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           vietnamiensis G4]
          Length = 156

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  RDWDAFVAAESPDPTRMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELLERFPGEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
 gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
          Length = 156

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    + K      +    ++       +         + GAE +GL     +   +  
Sbjct: 61  ADWPAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDLVLDQFASEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
 gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
          Length = 164

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K  + G      ++ +          D   ++ G E  GL  + 
Sbjct: 52  YWNEADVRYYNNLDEFKKKNVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGKETAGLPEEL 111

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +        + M   I++LN+SN+AA+ LY       
Sbjct: 112 LKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQN 149


>gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 156

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL     E      
Sbjct: 61  RDWDAFVAAESPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLSADVLERFANEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 246

 Score = 83.0 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 31/265 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R+                      +  + G H  + A
Sbjct: 1   MTIITSKANSLIKKTKKLLQKKYRQY---------------------SYLIEGWHLFAEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  I  +   +   +R+    N      V  V    +  +   +     +A    P
Sbjct: 40  -QANNADIINIFVLECYASRVSEFPN------VVLVSEDILKDLSASKTPQGIVAEIAFP 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        LL   + V DP N+G I+R+A A + D +  +++ +   ++   +S 
Sbjct: 93  KQVIPQQFFGKYLLL---EDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R++ L+      ++         SD     +   K +  ALI+G EG+G+
Sbjct: 150 QGSHFHLPIYRVNLLSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNV 265
             +  E A  + H+ MPG  ++LNV
Sbjct: 210 TSEMAEQADVLTHITMPGRAESLNV 234


>gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042]
          Length = 157

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLVFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays]
 gi|238908839|gb|ACF86752.2| unknown [Zea mays]
          Length = 549

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 49/275 (17%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVP 97
           +YGV  V AAL    R+ + L   ++     +                       V   P
Sbjct: 260 VYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRMAEEIGLNVIETP 319

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150
              ++ +V     HQG+ L+ +PL    +  +           + + LD + DP N+GAI
Sbjct: 320 KHDLNMVVD-NRPHQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAI 378

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT- 209
           +RSA  F   G++   + S   S V++K+++G+LE I  +   N+   L      G++  
Sbjct: 379 IRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVL 438

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP------------ 257
            G  ++   PL Q        L++G+EG GLRP  + + T +  +               
Sbjct: 439 GGTIANKAVPLSQVELGVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVSVEGADADA 498

Query: 258 ---GI------------IKALNVSNAAAVALYITQ 277
              G             +++LNVS AA V LY   
Sbjct: 499 GEEGDSSSNRDLRSFLAVESLNVSVAAGVLLYHLA 533


>gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018]
 gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 321

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 55/298 (18%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K++ + + +++         + G  +V  A+    + I  +   ++A+     D N  
Sbjct: 14  RVKRICAIS-RAKSRV-DGRFLVEGPQSVREAVRYAHKSILDIYVLQDAVNSDYIDVNSF 71

Query: 89  HPFP-----------VKTVPPQTIDKIVG--------KEAVHQGLALETAPLLSPTLD-- 127
                          +  +  +++                +        A   S  LD  
Sbjct: 72  KNLKNGILQNGSLETISKIVDESLKNQCYVHPATAEVMHKISTDCQGIVAVCDSTILDKE 131

Query: 128 -----------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                               +  L+     V DP N GAI+R A    C  ++       
Sbjct: 132 FIKEFNSIGVESKYKSGFAYDPILIAACWQVRDPGNAGAIIRVADVAGCSAVVFVDDCVN 191

Query: 171 SESAVLAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             ++ L +S +G+L H+P   +   +  D  + +           +++KKP         
Sbjct: 192 RFNSKLVRSTAGSLFHLPVVTMSEDDWFDWTKSLKIRVIAADIYGTENKKPKSFANLLKP 251

Query: 229 I-------------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +             A++ G E +GL  +       ++ + + G  +++N++ +AAV L
Sbjct: 252 LSDDLNKGYNEGSNAILFGNEARGLPEEILNRVDEISVIPIYGKAESMNLATSAAVML 309


>gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
 gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
          Length = 156

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++ +         +        +    +     +    I G E  GL    +E  A +
Sbjct: 61  HESIEEFFDSTEGNYYLLTKFGKQTYSDFDFTNTIENHYFIFGRETTGLPDWVKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
 gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
          Length = 154

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLQIALFEPEIPPNTGNIIRLCANSGFKLHLIEPLGFEWDDKRVKRAGLDY--HEFADVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +             +    ++   K   +        L+ G E +GL P+  +T     
Sbjct: 59  RHANYQAFLDCVGDARIFACTTKGTKYHHEAQYQAGDVLLFGPETRGLPPEVLDTLPQEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +    
Sbjct: 119 KVRIPMLPESRSMNLSNAVSVFIYESWRQL 148


>gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial,
           partial [Hydra magnipapillata]
          Length = 227

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 53/250 (21%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVK 94
             +     L+G+    AA+    RKIF++               L             + 
Sbjct: 7   RREH----LFGIAPCLAAILAGRRKIFKVYLNDKLEEEEPRRKELVQLVAEANERNIKLV 62

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                 +D++ G                                    DP N+GAI+RSA
Sbjct: 63  YKSRPILDRLCGGRPHQ-------------------------------DPMNLGAIIRSA 91

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-----LQKMHSWGFQT 209
             F  D II  ++ S   +A ++K +SGA+E        ++            +  G  T
Sbjct: 92  TYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDLLNYDWNLIGTVT 151

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALN 264
              +            + +  L++G EG G+ P      T +  +      +P  + +LN
Sbjct: 152 KDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSFNDRLPEGLDSLN 211

Query: 265 VSNAAAVALY 274
           VS A  + L+
Sbjct: 212 VSVATGILLH 221


>gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
 gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
          Length = 261

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 89/249 (35%), Gaps = 22/249 (8%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L    ++I  +   K    R   D              V    +D++  + A
Sbjct: 12  GMKPVLELLRTDPQRIDLVFCKKGLRTRDAQDVQQLCRQSGVRFSLVDQAALDRLCREAA 71

Query: 110 ----------VHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
                      HQG+           L             L++ LD V DP N+G + R+
Sbjct: 72  QQNGNEAAPLNHQGVVARLTATDFRDLADVLQAAAEAPLPLVVALDQVQDPGNVGTLCRT 131

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             A    G+I  +  S        ++A+GALE +P  R++NL  AL +    GF   G  
Sbjct: 132 LYALGGAGVILPRHNSAYLGPAAHRAAAGALERLPVARVTNLAHALDEAEEAGFSIYGAG 191

Query: 214 SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                    E        L+LG E KGLRP   +    M  + +     +LNV+ A A+ 
Sbjct: 192 CGPDAADAFEHAMQLPAVLVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNVAQAGAIL 251

Query: 273 --LYITQNH 279
             L   +  
Sbjct: 252 LGLAAMRRQ 260


>gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 246

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             + L +YG++ +  A+    +     L    +         +      K    + I+  
Sbjct: 2   NKKRLIIYGINPLYEAIKYKKKIYKIFLIKNLSKKNSKLKKIIEFSKKKKIKIIEKINFK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+     P+    ++ +  +        LL++LD + D  N G+++R++   
Sbjct: 62  KLIKKNHQGVFAFINPIKFSKIEYIIPNIFFSGKIPLLLILDSITDVRNFGSLVRTSACT 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D II T       ++   K++SG L  +P  + +N+   ++ + + G Q I ++  + 
Sbjct: 122 GVDAIIITN--YNIVNSDSIKTSSGGLFKVPICKENNIIKIIKFLKNSGIQVIAVTEKTN 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYIT 276
                    +  A ILG E KG+         +   L  +   + +LNVS A    LY  
Sbjct: 180 SICYNINYRNPTAFILGNEEKGISKNYLSICNNTVKLPLLKNSLSSLNVSVACGAILYEA 239

Query: 277 QNHFA 281
               +
Sbjct: 240 IRQRS 244


>gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
 gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
          Length = 156

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A L ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLEDAKLRRAGLDYHEYAQMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           +N    + K      +    ++       +         + GAE +GL     +  T   
Sbjct: 61  ANWAAFIAKESPDASRMFAFTTRGSGRFHEHAFKPGDWFVFGAETRGLPDAVLDQFTGEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  A+ ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 303

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A      + + +L  ++  + +        +      + V    + K+    
Sbjct: 66  LYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA-S 124

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GA+LRS+  F   G++
Sbjct: 125 AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAGLL 184

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++     A+ ++   GF       D  + +   
Sbjct: 185 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPGTATAMAQLRQAGFAIAATLVDGGQDVFAA 244

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 245 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 300


>gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 180

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 2/152 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  L+++L ++    N+G++ RSA A   + II +   +      +AK+A GA + 
Sbjct: 21  CQSPKHPLVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDT 80

Query: 187 IPYIRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + +   ++  +A+  M         + ++  S+        +  I L++G E  GL  + 
Sbjct: 81  VVWEYHADPLEAVCSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVVGNEVDGLENEI 140

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            ++   +  +   G   +LNV+ AA +AL+  
Sbjct: 141 LDSCDDVLEIPQYGTKHSLNVAVAAGIALFEL 172


>gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris]
          Length = 346

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 21/221 (9%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133
                      PV     Q +D +   + VHQG+ +E +PL                  +
Sbjct: 89  ELLREAEARDIPVLRPRRQKLDALCRHQ-VHQGVCMEVSPLKPRPWTEVEEARPGDDPRR 147

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA+LRSA     D +IT+ R S   + V++K+++GA+E +      
Sbjct: 148 LWLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTD 207

Query: 194 N---------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +             L        +    S        + + +    L+LG EG GL    
Sbjct: 208 DLAGFLQAKARQGWLVAGTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAV 267

Query: 245 QETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
           Q +   +  +     +P  +++LNVS AA + L+       
Sbjct: 268 QASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQRK 308


>gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 164

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                              + G +    ++           +    L+ G E  G+  + 
Sbjct: 50  YWDKLDVNVYSDYQDFLDRNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E       + M G I++LN+SN+ ++ LY     
Sbjct: 110 LLENQDCCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145


>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
          Length = 427

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 121/345 (35%), Gaps = 72/345 (20%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRR-----------NHRDYKKMQSFNQKSRHTSQP--ENLF 50
           I   K  +I         + R            +  + ++        R T +   E+  
Sbjct: 68  IDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTV 127

Query: 51  -------LYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHP 90
                  +YGV  V AAL    R  + L   +                            
Sbjct: 128 PKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAERIG 187

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVND 143
             V       ++ +V     HQGL L+ +PL       +           + + LD V D
Sbjct: 188 LKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMD 246

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAI+RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L    
Sbjct: 247 PQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSA 306

Query: 204 SWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----- 257
             G++   G  +    PL + +  +   L+LG+EG GLRP  + + T +  +        
Sbjct: 307 ENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSF 366

Query: 258 -----------------GI--------IKALNVSNAAAVALYITQ 277
                            G         +++LNVS AA V LY   
Sbjct: 367 VGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 411


>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
          Length = 517

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 121/345 (35%), Gaps = 72/345 (20%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRR-----------NHRDYKKMQSFNQKSRHTSQP--ENLF 50
           I   K  +I         + R            +  + ++        R T +   E+  
Sbjct: 158 IDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTV 217

Query: 51  -------LYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHP 90
                  +YGV  V AAL    R  + L   +                            
Sbjct: 218 PKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAERIG 277

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVND 143
             V       ++ +V     HQGL L+ +PL       +           + + LD V D
Sbjct: 278 LKVIEASKHDLNMVVD-NRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMD 336

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAI+RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L    
Sbjct: 337 PQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSA 396

Query: 204 SWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----- 257
             G++   G  +    PL + +  +   L+LG+EG GLRP  + + T +  +        
Sbjct: 397 ENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSF 456

Query: 258 -----------------GI--------IKALNVSNAAAVALYITQ 277
                            G         +++LNVS AA V LY   
Sbjct: 457 VGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLA 501


>gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis]
          Length = 201

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       A I+G E +G+  +    A + A + M G + + N+S AAA+ +Y  +    
Sbjct: 138 QIDWTRPTAFIMGNEKRGVSCEAVALADACAVVPMVGFVDSYNLSVAAALIMYEARRMRE 197

Query: 282 K 282
           +
Sbjct: 198 Q 198


>gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 151

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     L+ G E  G+  +  +       + +   +++LN++ A A+AL      
Sbjct: 86  HDFRFRADDVLLFGKESAGVPDEVAQACDERVRIPIRPEVRSLNLAIATALALGEALRQ 144


>gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
          Length = 228

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +L V++ V    N  AI+RS  A +   ++  ++ +  +  +     +           
Sbjct: 41  FILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNIFDPNLSVTKGADTWV-EVEKMP 99

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N     +              ++   L        IAL+ G E +G+  +  + A    
Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELLDFADETL 159

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G  K+ NVS AAA+ +Y  +   
Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKL 187


>gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
 gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
          Length = 158

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
 gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
          Length = 153

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R   A  C+  +       ++   L ++       +     
Sbjct: 1   MLHIVLVEPEIPGNTGNIARLCAATCCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            N  +   +     F      +  +             L+ G E  GL  +       + 
Sbjct: 61  ENFQEVADRYAGHNFYFNTTKAQKRYTD--IRYTAGDVLVFGKETAGLPEELLRANWPNC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SNA AV  Y      
Sbjct: 119 IRIPMLEDARSLNLSNAVAVVAYEALRQL 147


>gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
 gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
          Length = 162

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +                ++ + K  +     +   ++ G E  GL    
Sbjct: 50  YWDKLDIYYYDSLEELMKKYKDSNFYFATTKAPKSYDIVSYQENDFIVFGKETAGLPESL 109

Query: 245 QET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +    +   + M    ++LN+SN+ A+ LY       
Sbjct: 110 LKNNIENCIRIPMKDNTRSLNLSNSVAIILYEALRQLN 147


>gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 306

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 107/310 (34%), Gaps = 49/310 (15%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           IFS       +  R   D++ + + ++KS      + +   G   V   L +P      +
Sbjct: 3   IFSPIRIDDPRDSRLD-DFRNLNASDKKS----GEQLIIAEGTLVVPRLLASPY-PTRAV 56

Query: 72  LATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKE------------------ 108
           +     L  ++ + +         F V  V  + + ++ G +                  
Sbjct: 57  VGFPGKLRAIEAELSRALSSDDANFSVFEVSREVLKEVAGFDMHRGLVASADRLPVNPVG 116

Query: 109 -----------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                      A     A     +L+   +A   S ++ VL+ V D  NIG+I R+A   
Sbjct: 117 PVGPVSTASTGAPVGTGASAVEAVLNHLEEAADTSGVIAVLEGVGDHENIGSIFRNAAGL 176

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++     +        + + G +  +P+ R    T   Q+      +         
Sbjct: 177 NVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVALT 236

Query: 218 KPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              +           ++  K+A+++GAEG GL       A   A + M     +LNV+ A
Sbjct: 237 PAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVATA 296

Query: 269 AAVALYITQN 278
           AA+A Y    
Sbjct: 297 AAIAFYEAVR 306


>gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 162

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     EH+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGAGLHLIRPLGFSTDDKMLKRAGLDYWEHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253
            +  +K     F  +    +      +          + G E  GL      E       
Sbjct: 65  EEFYEKNQDGEFFYLTKYGEKAHTAFDYSNPEKNYYFVFGRETNGLPANIIQENFDHCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M   +++LN+SN AA+ +Y       
Sbjct: 125 IPMTDKVRSLNLSNTAAILVYEAFRQQN 152


>gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
          Length = 271

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 6/252 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N    +  ++  +K     Q       G   +SA L++       LL     L  +    
Sbjct: 12  NDPRLEAYRNIREKDLVGRQH-QFIAEGKVILSALLHSKEFSAVSLLVVAARLLGIMPIL 70

Query: 86  NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHV 141
               P  P+  VP + +D I G       L +     L      L  +    L+ VL  +
Sbjct: 71  KETKPTCPIYCVPQKIMDDIAGFHVHRGMLGIGERKKLPSLKEFLQNLPEKALIPVLCGI 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++  N+GAI R+A AF+  GII  K           + ++GA  ++PY +  ++   +  
Sbjct: 131 SNHDNMGAIFRNAAAFASTGIIVDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIITA 190

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +  F    LS  + + L+        ALI G EG GL     + +     + M     
Sbjct: 191 LSNADFHLYALSPSAPRYLKDTKAIKHTALIFGTEGNGLPAHVLQKS-ETLRIPMAYGFD 249

Query: 262 ALNVSNAAAVAL 273
           ++NV+ A+ +AL
Sbjct: 250 SINVATASGLAL 261


>gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 167

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ + +   +        L+ G E  G+  +       ++  + M G  ++LN+SNA
Sbjct: 79  YMATTKAPQTYTEVHYEPDCYLMFGKESAGIPEEILLAHQETVVRIPMLGETRSLNLSNA 138

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 139 VAIVLYEALRQ 149


>gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
 gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
          Length = 157

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFGWDDKRLRRAGLDY--HEFAHIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  HHANYDAFLSSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLPASILDNLPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148


>gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 229

 Score = 82.6 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 10/184 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V  V  + ++ +       +G   +        + A R     +VL+ +  PHN  A++R
Sbjct: 3   VFMVDKKLLEYL-------EGFLTDKRKQTFQKVLAERTRHFTVVLEDIYQPHNASAVVR 55

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW---GFQT 209
           +   F    +   +    +  +      +         +           H         
Sbjct: 56  TCDIFGVQDLHVIENRYINRVSKYVTKGAQKWITTKRYKTDGDNTKTCLNHLKTAGYQII 115

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                     L+    + K A + GAE  G+    +E A     + M G  ++ N+S AA
Sbjct: 116 ATSPHADANLLQDFKIDKKTAFVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISVAA 175

Query: 270 AVAL 273
           A+ L
Sbjct: 176 AIIL 179


>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
 gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
          Length = 495

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 78/345 (22%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
             K+  +       H A  R   R  K+         +T+      +YG   V AAL   
Sbjct: 134 QDKRHSRRAEPTKHHRATERVPER-VKENVQVPDAIPYTTPASEF-IYGTSAVEAALRCS 191

Query: 65  SRKIFQLLATKNALARLD------WDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLAL 116
            R++++L   + +   L           L     VK        +   +     H G  L
Sbjct: 192 RRRMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSAGRPHNGCVL 251

Query: 117 ETAPLLS----------------------------------------PTLDAVRNSQLLM 136
           E +PL                                             D      +++
Sbjct: 252 EASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVL 311

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD + DP N+GAI+RSA     D II   R S   S V  K+++GA E++  + +SN  
Sbjct: 312 LLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEV 371

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLE----------------QEIKNDKIALILGAEGKGL 240
           D +Q+  + G++     +                                +++G+EG GL
Sbjct: 372 DFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGL 431

Query: 241 RPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
               +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 432 SRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476


>gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
 gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
          Length = 265

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 10/242 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDK 103
           P+   + G+  V+A       ++ +L   +     +            P + V  + +D+
Sbjct: 24  PKPFRICGLPAVAAVFARDPDRVQRLFYEERHRQAVGPFCARLAEARKPYRLVEKEELDR 83

Query: 104 IVGKEAVHQG------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G   +H G                         + L++LD + +PHN+GAI+R+A  F
Sbjct: 84  VAGTP-LHGGVVAVAEPRQVLPFNPDWAKRWAAEGRPLLLLDGIGNPHNLGAIVRTAAFF 142

Query: 158 SCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
             D ++ +        S    + A G  E++   R      A++++              
Sbjct: 143 GLDRLVISDHPEQAQPSESAYRVAEGGFEYVQIYRADRFATAVRRLAESYRVVGTALGGH 202

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                        A++LG E  GL  +T      +A +   G +++LNV+  AA+  +  
Sbjct: 203 PALGRLTGGPKPPAVLLGNEEDGLPAETLRACAELATIPGAGQVQSLNVAATAAILAWEM 262

Query: 277 QN 278
             
Sbjct: 263 TR 264


>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
 gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
          Length = 159

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 2/148 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R+  A      +       ++  +L ++     +H+  +   
Sbjct: 5   IHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETA-TSM 251
           +L +  +K     F  +           +    +K    I G E  GL  + +E      
Sbjct: 65  SLDEFYEKNAGGEFFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEVKENNKDRA 124

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G +++LN+SN AA+ +Y     
Sbjct: 125 LRIPMTGNVRSLNLSNTAAILIYEALRQ 152


>gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385]
 gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385]
          Length = 158

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +      
Sbjct: 64  AAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPVEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|188579913|ref|YP_001923358.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179343411|gb|ACB78823.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 149

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR A        I            L +S    L+H+   R 
Sbjct: 1   MLHLALYQPDIPQNTGTMLRMAACLGVAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +             + +  ++    P  Q    D   L++G E  G+       A +  
Sbjct: 61  RSWDAFQAWRQEARLRLVLATTAGALPYTQHAFRDGDCLLMGRESAGVPEAVHTAADARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+  AA+ L      
Sbjct: 121 VVPIRPGLRSLNVAVCAAIILGEAIRQ 147


>gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           AMMD]
          Length = 170

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               +   ++L     P N G ++R          +      P + A + ++     E+ 
Sbjct: 10  QPDPTMFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYA 69

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +    +        +    ++                 + G+E +GL     E 
Sbjct: 70  EMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLER 129

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L M    ++LN+SN  AV ++     
Sbjct: 130 FPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 163


>gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
 gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
          Length = 158

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFIEYLQRERETFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
 gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
          Length = 164

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R+  A      +            L ++     + +      + 
Sbjct: 3   VILLEPEIPQNTGNIGRTCCATGTKLHLIEPMGFRINEKNLKRAGMDYWDDLDVTIYDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D + +            +                ++ G E  G+  +   +   +   +
Sbjct: 63  KDFMDQHPGIKIWMATTKA--PHRYTDVEFGPDDYIMFGKESAGIPEEILVDNEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN++N+ A+ LY     
Sbjct: 121 PMNPEIRSLNLANSVAIVLYEALRQ 145


>gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 157

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L+ G E +GL    +  A S   + M G  ++LN++ +  V LY      
Sbjct: 93  VRYRPGDVLLFGPESRGLPEAVRALA-SPVRIPMQGGARSLNLAVSVGVGLYEAWRQL 149


>gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56]
          Length = 209

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 13/171 (7%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQ--------PENLFLYGVHTVSAAL 61
           S KD+HYA LRR HRD K+ +    +   + R  ++        P+ ++LYG+HTV AAL
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +NP RK  +L  T+NALARL+ D         + V P  IDK++G EA+HQG+ LET PL
Sbjct: 76  DNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETRPL 134

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+E
Sbjct: 135 PVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTE 185


>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             IALILG E  GL   T      +  L   G +++LNV+  AA+ ++      
Sbjct: 160 KPIALILGNEEDGLPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213


>gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
          Length = 271

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 96/278 (34%), Gaps = 40/278 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN------------PSRKIFQLLATKN 76
           D KK+     + ++  Q     + G H V   +              PS +   L  T +
Sbjct: 6   DVKKLH----QKKYRGQFGFYLVEGEHLVLELVKAVRANAYSNASSAPSAESITLYITDD 61

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---------------ETAPL 121
              +      L   F +  V  + + ++   +     +A                + +  
Sbjct: 62  FEQK---ARALDSGFTLVNVTQKQMSQLSDTKTPQGIIACVPLPSSTAGATNTLEQVSDK 118

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            S      ++ Q  + L  V DP N+G ILR+   F    ++ +       ++ + +S+ 
Sbjct: 119 HSNQGLGHKDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSM 178

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA+ H+P     +L     +   + +  +   + +         +D    + G E +G+ 
Sbjct: 179 GAIFHVPIELDVSLDALQTRFSRFAYLDMAGEAVTAPS-----FSDFDCYLFGNEARGVP 233

Query: 242 PKTQETATSMA-HLHMPGIIKALNVSNAAAVALYITQN 278
                   + A  +   G I +LN+++A  + +Y    
Sbjct: 234 KAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271


>gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
 gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
          Length = 162

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PK 243
                    +                  S+ + +            L+ G E  GL    
Sbjct: 50  YWHLVTVHYHDRFDEVLEMYPNRTFYFCSTKASRTHCDVAYPPDAFLVFGKESAGLPHDL 109

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     + M    ++LN+SNA AV  Y     
Sbjct: 110 LAAHRDRTIRIPMASGARSLNLSNAVAVVAYEALRQ 145


>gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 278

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 25/263 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY ++     + R  +Q           ++ A+          L     LA +      
Sbjct: 14  ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLAEMRPVIAS 72

Query: 88  PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-------TLDAVRN 131
                        PV   P + ++ I G   +H+G                         
Sbjct: 73  AAGCGGNDDGGEVPVFVAPEEVLESITGFH-LHRGALAAMNRPELIGVSELLSAARGGAG 131

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ R
Sbjct: 132 ARRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTR 191

Query: 192 ISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           I       +               T     +          + ++A++LG EG GL  +T
Sbjct: 192 IERWPAMDELHGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRT 251

Query: 245 QETATSMAHLHMPGIIKALNVSN 267
              A  +  + M G + +LNV+ 
Sbjct: 252 IAAADEVVRIPMAGGVDSLNVAA 274


>gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM
           4028]
 gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM
           4028]
          Length = 158

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R   A +    +        +   L ++      H+      + 
Sbjct: 3   IALYEPEIPPNTGTIARLCAASTTRLNLIEPLGFSLDDKYLKRAGLDYWPHVDKRIWPSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+         +  S+       +        ++LG E +GL P+    A  +  + 
Sbjct: 63  PAFLEGRDPGRL--VFTSARQGVAYHRFSFRADDIIVLGPETRGLPPEVLHDAQDLIRIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G ++++N++NAAAV LY     
Sbjct: 121 IWGEVRSVNLANAAAVLLYEAYRQ 144


>gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
 gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
          Length = 218

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 4/217 (1%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V   LN+   K+ ++  +K    +  +   L    P          + + K   HQG+  
Sbjct: 2   VMHILNSYQEKLQEIYLSKEIDKKFFF--ALKKACPNIIKVDNKKAQSLAKGGNHQGVLA 59

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I    ++   +   
Sbjct: 60  KVELPLAASLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDFAKELAYEG 117

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
              +S  L +     + + T  L             +S       + +   K AL LG+E
Sbjct: 118 IVRSSLGLMYDLPFSVMSNTLDLINELKTSGFLCLGASMQGSSQVENLSLKKCALFLGSE 177

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +GL  K      ++  + M     +LNVS AA + +
Sbjct: 178 HEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 214


>gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 149

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 ++LG+EG G+     + A     + M    ++LNV+ +A +AL      
Sbjct: 89  FLPDDIVLLGSEGAGVPRPVHDRADLRVRIPMRPGFRSLNVAVSAGIALAEALRQ 143


>gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100]
 gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase,
           TrmH family [Campylobacter lari RM2100]
          Length = 226

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       L     KI ++   K    + ++         +K +  +T   +  +  
Sbjct: 2   IVYGKQVFFYILEKHKEKIKEIYLAKEC-EKANFSKIAKASKKIKKLDFKTAQSLA-RGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  +E       + ++++    +++L +++D  NIGAI+RSA A   DGII   +  
Sbjct: 60  NHQGFLMEIDEFEFSSFESLKEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKSV 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +       AS        I +++   ++          I  S+     +      DK 
Sbjct: 120 AMD---GVIRASSGAALDMKIVLNDDILSMINELKQKGFYIYASASGGSDIHTIKTKDKK 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            LI+G+EG G+ PK  +       + M     +LNVS A A+  
Sbjct: 177 VLIMGSEGFGIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220


>gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435]
          Length = 344

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 48/319 (15%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAAL 61
            +  K+ +     + +   K    + D        +++R   + P    ++G   V AAL
Sbjct: 21  HVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEERIFGAQAVLAAL 80

Query: 62  NNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              +R+    L   N   + +   +        +K V  +    ++    VH G  L+ A
Sbjct: 81  KANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCNNNVHNGYVLKAA 140

Query: 120 PLLSPTLDA------------------------------VRNSQLLMVLDHVNDPHNIGA 149
              +  L A                                +  L + +D V+DPHN+GA
Sbjct: 141 KFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVYIDGVSDPHNLGA 200

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS+     D +   ++     ++V +KS++G +E +P   +      L+  +  G+ T
Sbjct: 201 IIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQFLEAANENGWAT 260

Query: 210 IGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKTQETATSMAHL----- 254
           +   S   K                      LI+G+EG G+R    + ++ +  L     
Sbjct: 261 VSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDRSSHLVSLKSQRK 320

Query: 255 HMPGIIKALNVSNAAAVAL 273
           ++   + +LNVS A AV L
Sbjct: 321 NLDSSVDSLNVSVATAVLL 339


>gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 246

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 100/265 (37%), Gaps = 31/265 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  I   K     K R+                      +  + G H  + A
Sbjct: 1   MTIITSKANSLIKKTKKLLQKKYRQY---------------------SYLIEGWHLFAEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
               +  I  +   +   +R+    N      V  V    +  +   +     +A    P
Sbjct: 40  -QANNADIINIFVLECYASRVSEFPN------VVLVSEDILKDLSASKTPQGIVAEIAFP 92

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        LL   + V DP N+G I+R+A A + D +  +++ +   ++   +S 
Sbjct: 93  KQVIPQQFFGKYLLL---EDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P  R++ L+      ++         SD     +   K +  ALI+G EG+G+
Sbjct: 150 QGSHFHLPIYRVNLLSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNV 265
             +  E A  + H+ MPG  ++LNV
Sbjct: 210 TSEMTEQADVLTHITMPGRAESLNV 234


>gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
          Length = 280

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 18/252 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNP-------SRKIFQLLATKNALARLDWDANLPHPFP-- 92
           +       F  G   V   +             +  ++     L +      L       
Sbjct: 23  YRDSEGCFFATGEKFVKDLIVANLPGCSDAHHIVDAVIVEDGYLEKYLSQTRLAGQLKKL 82

Query: 93  -----VKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                VK    Q + K+   ++  H    L+ +  +    +    S+ ++ L  + DP N
Sbjct: 83  IAAGLVKCFSSQVMGKLSDDKSAQHIAAVLKKSFFVQAAANKFDLSENILGLCEIQDPRN 142

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A A     +++       +        + A        +   +          
Sbjct: 143 LGAIMRTAAATGTGLLLSND---SCDVFSDKVIRTSAGLFDRVGFVQATSREDFLNRLKD 199

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +    + +               +++G EG+GL       AT    + M   + +LNV 
Sbjct: 200 RRVFAAALNEGMIYTNLNGMKNTCILMGNEGRGLYEDDFNIATDKVFIPMENDVDSLNVG 259

Query: 267 NAAAVALYITQN 278
            AA++ ++    
Sbjct: 260 VAASLFMFELNR 271


>gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2]
          Length = 227

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG       +++ S  I ++L  KN  A + W+        ++ +  +   + + K  
Sbjct: 2   IVYGKQIFHYIIDHHSHIIQRILLNKNVDAGV-WNKLQRLGVKIERIDNKK-AQALAKGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  LE    +    + V+N   L++L +V D  NIG+I+RSA A   DG++ +    
Sbjct: 60  NHQGFLLEIEDYVFTPFEVVKNFDFLVLLYNVTDIGNIGSIVRSAYALGVDGLVISGLKD 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                V+ +S+  AL     I +        K        +  +    + +  +  + K 
Sbjct: 120 LKMEGVIRRSSGAAL--DLPIALQFNLYDAIKELQDRNFLVYAADMQGEDVRTKRFHGKR 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           A++LG+EG+G+  K  +    +  + M     +LNV+ AAA+ +
Sbjct: 178 AILLGSEGEGVPKKAVQKCNEILKIEMKRDFDSLNVAAAAAIFI 221


>gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens PCA]
          Length = 164

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +    +VL     P N G I R   A      +  K    ++   L ++       +
Sbjct: 1   MTGHQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L    Q      F      +   +        +   ++ G E  GL       
Sbjct: 61  DIRYWESLDQLRQAWPDARFFYTSKKA--ARCYVDAGFREGDFIVFGKETVGLPEDLLRA 118

Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + + G +++LN+S AA + LY     
Sbjct: 119 NEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQ 151


>gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 157

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMA 252
              L  +   G   I   +                 L+ G E +GL  +  E+   +   
Sbjct: 64  QAFLDYLEQRGEYRIFACTTKTTGHHVDAQYRQGDVLLFGPETRGLPMEVIESLPMSQRI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M    ++LN+SNA A+  +      
Sbjct: 124 RIPMMPDARSLNLSNAVAIIAFEAWRQL 151


>gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 155

 Score = 82.6 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR          I            L ++    LE     R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLGACLGVHVHIIEPAGFDLSDRNLKRAGMDYLERASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L  M  +  +   LS+ +              L+ G E  G+     +     
Sbjct: 61  HIDWQHFLDAMQKFNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPDYVHQAVDCT 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LKIPMQQQARSLNLAMSVAITTGEALRQI 149


>gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
 gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
          Length = 156

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  RDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
          Length = 230

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +    +  L  T   LA L  D       P        + +++G       LA     
Sbjct: 2   LASRFTPL-ALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGFHLNRGVLAAAGRV 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   V  ++ + VL+ VND  N+G+I R+A   S D ++     +        + +
Sbjct: 60  PEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVS 119

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ----EIKNDKIALILGAE 236
            G    +PY R ++    L  +   GF+ + ++              + +++IAL++GAE
Sbjct: 120 MGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAE 179

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G GL       +     + M     +LNV+ AAA+A Y    
Sbjct: 180 GPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 221


>gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603]
 gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603]
          Length = 158

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +  A   
Sbjct: 64  AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFKQGDVLMFGPETRGLPAELIASLPAEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 152

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 1/143 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G + R   A      +        +   + ++      H+      
Sbjct: 1   MHIVLFQPEIPPNTGNVARLCAATRTSLHLIEPLGFSVDDKHVRRAGLDYWPHVDLTVWP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                ++++ S     +  S+     ++    N   AL+ G E +GL     + +  +  
Sbjct: 61  GWYAFMREVGSRVRL-VMTSARGGTAVQDFRFNKNDALVFGPESRGLPAHMLDGSGHVVR 119

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + + G +++LN+S AA + LY  
Sbjct: 120 IPIWGEVRSLNMSTAAGIVLYQA 142


>gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
 gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
          Length = 158

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +     ++    ++ +              L+ G E +GL  +  E+      
Sbjct: 64  QAFVEYLEKERGDYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12D]
          Length = 156

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L+       +   L++    P            + G+E +GL  + +E   AT 
Sbjct: 61  ADWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGDWFVFGSETRGLSEERREWFPATQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307]
          Length = 279

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 26/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+    + ++ I S          R +   +++++  Q  R   +   L           
Sbjct: 1   MSRFDGRPADLISS----------RRNPLVQQVRALQQ-PRGRREQGLL--------LLE 41

Query: 61  LNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA- 115
             +  ++  +L    + L       +    L    P++ V P+ +  +   ++    +A 
Sbjct: 42  GTHLLQECRRLGLPLDRLIATTRWQEQHPTLLGSEPLQPVSPEVLQAMASTDSPDGVIAL 101

Query: 116 -LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               AP L         S LL+ LD V DP N+G ILR+A+A   D +       P +  
Sbjct: 102 LPHPAPGLQAPSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPK 161

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           VL  SA  ALE +   R+ +L   L      G        D  +P  Q   +    L+LG
Sbjct: 162 VLRASAGAALE-LSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLG 220

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            EG GL P   +   +   +     +++LNV+ AA V L      
Sbjct: 221 NEGSGLDPALVQQGVTALTIPHHAAVESLNVAVAAGVLLLERVRQ 265


>gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 180

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + ++L ++    N+G++ R+A A   + +I +   +      + K+A GA + + +
Sbjct: 24  PKHPIYLMLHNIRSMWNVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAW 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
              ++   AL  +   G +  GL           +      + L++G E  GL  +  E 
Sbjct: 84  EYHADPLVALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLEL 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   G   +LNV+ A+ +AL+    
Sbjct: 144 CDEVLEIPQYGTKHSLNVAVASGIALFEFVR 174


>gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 226

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 21/237 (8%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTIDKIVGK 107
             G   V   L         L+AT N          + HP     +  V  + + +   +
Sbjct: 2   AEGHKLVGDLL--GYFPCKLLIATSNW-------LKINHPVTANEIIEVTQEELSRASLQ 52

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +   + LA+   P      + +++S L + LD V DP N+G I+R A  F  + I  +  
Sbjct: 53  KTPQEVLAVFVQPSYDLNPEVIKSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAG 111

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +    ++  GAL  +     S      Q + S     +  +  S   +  E  + 
Sbjct: 112 TADVYNPKTVQATMGALARVKVHYCSLP----QLIESLADIPVYGTFLSGNIIYAESLSA 167

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVALYITQNHF 280
              +++G EGKG+ P+ ++      ++          ++LNV+ A AV     +   
Sbjct: 168 HGLIVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRRRL 224


>gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
 gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
          Length = 156

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++ +         +        +    +     +    I G E  GL    +E  A +
Sbjct: 61  HESIEEFFDSTKGNYYLLTKFGKQTYSDFDFSNTLENHYFIFGRETTGLPDWIKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
 gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
          Length = 156

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            N    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  RNWDAFVASEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
 gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
          Length = 272

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 14/256 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  +K+        R   +     L G   +   L   + +   ++ +         + +
Sbjct: 11  NTTFKRFLRLQH-PRDIRKHGKALLSGPKQIREVLQEFTDRCAGVICSNRHEDSEFPEVD 69

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                P   + P    ++           L       P  D         +     DP N
Sbjct: 70  ---SLPRYRLSPDLFKQVDTFGT--GKPLLIVRAETFPPFDDTLYHPGCTLCVPFQDPSN 124

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA++R++ AF    I+  K  +        + A   +  + + +         +     
Sbjct: 125 VGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIFRVSFFQGPA-----LRQLKKL 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              + + S   K   +    D   L+ G EG G+  +  + +     + M   +++LN +
Sbjct: 180 EIFLIIMSTEGKDAARFEFPDSFCLLPGMEGPGIP-EILKGS-GNVSIPMAKGVESLNAA 237

Query: 267 NAAAVALY-ITQNHFA 281
            A  + LY      F 
Sbjct: 238 MATGIVLYLWRNRQFN 253


>gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
 gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
          Length = 179

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPY 189
            L++VLD+V   HN+G++ R+A AF   G+       R    E    A  A  +++   +
Sbjct: 24  PLVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALGAEDSVDWEYF 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                  +AL++     F    ++        +   + K AL+LG E KG+     + + 
Sbjct: 84  EDPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYALVLGNEVKGVTQSVVDASD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +   G   +LNVS +A + L+      
Sbjct: 144 AAVEIPQYGTKHSLNVSVSAGIVLWEFAKQL 174


>gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans
           568]
 gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia
           proteamaculans 568]
          Length = 157

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +      P +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDY--HEFASIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL  +  E   A  
Sbjct: 59  RHADYAAFIASENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 85/259 (32%), Gaps = 20/259 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + +  K+++  +   +   +     + G+     AL+   ++    L T      + +  
Sbjct: 5   SQKLIKEIKKLH-SPQGRKKSIYYVIEGLRCCDEALSRLPKEDLIALLTTENTDNISYPV 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +         +  + ++++   +     L L      S   +   +  L++  D + DP 
Sbjct: 64  DKK-----YILSEKDLNELTQTQNSQGVLILAKKKDTSSDFEFKDDFILVL--DRIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ILR+A+A     I+         +    ++  GA   + +    NL+         
Sbjct: 117 NIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLK 176

Query: 206 GFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA----HLHMPGII 260
             +    +         +        L+ G E  G+                 +     I
Sbjct: 177 ERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSNI 229

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ AA + L+     
Sbjct: 230 ESLNVAQAATIYLFEGLRQ 248


>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
 gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
 gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
          Length = 360

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 23/223 (10%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133
               A      PV     + +D +   + VHQG+ +E +PL                  Q
Sbjct: 94  ELLRAAEERAIPVLRPRRRELDVLCRHQ-VHQGVCMEVSPLRPRPWAEAEVARPGDDPQQ 152

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +      
Sbjct: 153 LWLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTD 212

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLRP 242
           +L   LQ     G+   G                       + +    L+LG EG GL  
Sbjct: 213 DLAGFLQARARQGWLVAGTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSR 272

Query: 243 KTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
             Q +   +  +     +P  +++LNVS AA + L+   +   
Sbjct: 273 AVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 315


>gi|238063949|ref|ZP_04608658.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237885760|gb|EEP74588.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 286

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 7/240 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106
               G   V  AL  P   + +L  T  AL R    A        PV  V  + +  +  
Sbjct: 46  FLAEGPQAVREALARPGT-VTELFGTPAALDRYADLAEHAADADVPVSDVTDEALAALAE 104

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             A    +A+     +          +L+ VL  + DP N G +LR+A A     ++   
Sbjct: 105 TVAPQGLVAVCRHLDVPLDAALAAGPRLVAVLAEIRDPGNAGTVLRTADAAGAGAVVFAG 164

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-- 224
                 +    ++++G+L H+  +R  +    ++ + + G   +  +      L+     
Sbjct: 165 DAVDPYNGKCVRASAGSLFHVDVVRAGDPVAVVEALRAAGLAVLATTGYGDSDLDDLADG 224

Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  A + G+E  GL       A +   + + G  ++LN++ AAAV LY +     +
Sbjct: 225 GALAAPTAWLFGSEAHGLPGGLAAAADARVRVPLHGRAESLNLAAAAAVCLYASARALRR 284


>gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
 gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
          Length = 154

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R      C+  +      P + A L ++     E+   +  
Sbjct: 1   MFTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPLGFPLDDAKLRRAGLDYHEYARLVVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            N       +                  +Q        L+ G E +GL  +  ++  A  
Sbjct: 61  ENWEACRTALSGRRIFAATTKG--ATRHDQTAFRPGDVLLFGPESRGLPQEVLDSFPADR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SNA AV ++     
Sbjct: 119 RVRLPMQPESRSMNLSNAVAVMVFEAWRQ 147


>gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126]
          Length = 260

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 24/265 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALARLDW 83
           D KK+     + +  +Q     + G H V   +N             L  T +  A L  
Sbjct: 5   DVKKLH----QKKFRTQFGFYLVEGEHLVLELINVAQHDSSTLGDITLYVTADYEAWLKE 60

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLAL--------ETAPLLSPTLDAVRNSQL 134
             +       V+TV  Q + ++   ++    +A          +    +       +++ 
Sbjct: 61  KLDSSVSNMKVETVSSQQMQQLSDTKSPQGIIARVPLPNSALYSERSQTSISANKSSAEK 120

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + L  V DP N+G ILR+        ++ +       ++   +S+ GA+ H+       
Sbjct: 121 YIYLYEVQDPGNLGTILRTLAWLGDFTLLLSPNSVDPYNSKAVRSSMGAIFHVNMELNVA 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-H 253
                 +     F+       +   +      D    + G E +G+         + A  
Sbjct: 181 -----LESLGERFERFAFLDMNGSNITSNTFGDYQCYLFGNEARGVPVDALSKLNATAYT 235

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           +   G I +LN+++A  +  Y    
Sbjct: 236 IAGSGKIDSLNLASAVNICAYELTR 260


>gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246]
          Length = 172

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSN 267
             + + +++P  +    D   L+ G+E  GL P  +E  A  +  + MPG  +++LN++ 
Sbjct: 97  WCVETPAERPYTRAEFADGDCLLFGSESSGLPPSVRERYADRLVGIPMPGGAVRSLNLAT 156

Query: 268 AAAVALYITQNHF 280
           A  + LY      
Sbjct: 157 AVGIVLYDALRRL 169


>gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 274

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS--RKIFQLLATKNALAR 80
           +     + +   ++   T +       G   +  ++ A            LL        
Sbjct: 12  DDPRVAEFREIRER-DLTGRENRFIAEGTVVLRMLAEAHAAGRGFFAEKILLLRNRVEGV 70

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPTLDAVRNSQLLMVL 138
           L      P   PV       +D +VG       LAL        +  LDA+    L++V 
Sbjct: 71  LPILERFPADVPVYVAGADVLDGVVGFHLHRGVLALGRRQDRGEAALLDALPERALVLVG 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDV 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +     + ++AL++G EG+GL           A +    
Sbjct: 191 LVALAERGFAIWTLSPHGKTDIRAIPASTRMALVVGTEGEGLPEALLARF-QSARIPQSE 249

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 250 ELDSLNAATATGIALF 265


>gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 305

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A        + +L  ++  + +        +      + V    + K+    
Sbjct: 65  LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 123

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + L  V +PHN GAILRS+  F   G++
Sbjct: 124 AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLCGVGNPHNFGAILRSSAHFGVAGLL 183

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   AL ++   GF       D  + +   
Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 244 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299


>gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score = 82.2 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            + +       ++LD ++DP N+G +LRS  A     +I         +    +SA GA 
Sbjct: 14  DVPSKEMPPFYLILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGAS 73

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P + ++N  D    +              +   +        A+ILG EG+GLR + 
Sbjct: 74  FRVPVLELTNADDKDGALDQKKSLAHFQVDWIRHTKDDSKSGGGSAIILGREGEGLRREV 133

Query: 245 QETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +           H+ M   +++LN +   +V ++     ++
Sbjct: 134 RAAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQWS 174


>gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella
           anatipestifer RA-YM]
 gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 231

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +L V++ V    N  AI+RS  A +   ++  ++ +  +  +     +           
Sbjct: 41  FILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNVFDPNLSVTKGADTWV-EVEKMP 99

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N     +              ++   L        IAL+ G E +G+  +  + A    
Sbjct: 100 RNKASLEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELLDFADETL 159

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G  K+ NVS AAA+ +Y  +   
Sbjct: 160 AIPMYGFTKSFNVSVAAAICMYELKQKL 187


>gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MC40-6]
          Length = 156

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL     E      
Sbjct: 61  RDWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
 gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
          Length = 187

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L +VL     P N G I R+  A      +       ++   L ++       +   
Sbjct: 33  NMALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIE 92

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249
              +  +         +      +  +         D   L+ G E KGL P+     A 
Sbjct: 93  YHDSFEELQALYPEGRYFYATTKATKRYMD--IEYQDGDFLVFGKETKGLPPELLAANAE 150

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M   +++LN+SN+AA+ +Y      
Sbjct: 151 HCIRMPMTDKVRSLNLSNSAAIMVYEALRQL 181


>gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 154

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R      C+  +      P E A L ++     E+   +  
Sbjct: 1   MFTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPMGFPLEDAKLRRAGLDYHEYARVVVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    L+ +                  ++         + G E +GL         A  
Sbjct: 61  EDWDACLRTLQGRRIFAATTKG--ATRHDRISYQPGDVFLFGPESRGLPQDVLAALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SNA AV ++      
Sbjct: 119 RIRLPMRPESRSLNLSNAVAVTVFEAWRQL 148


>gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           CPHL_A]
          Length = 255

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 85/172 (49%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +    A+         P         +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 4   NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
 gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
          Length = 552

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 110/278 (39%), Gaps = 52/278 (18%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------------PFPVKTVP 97
           +YGV  V AAL    R+ + L   ++     +                       V    
Sbjct: 260 VYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRMAEEIGLKVIETS 319

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAI 150
              ++ +V     HQG+ L+ +PL    +  +           + + LD + DP N+GAI
Sbjct: 320 KHDLNMVVD-NRPHQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAI 378

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA  F   G+I   + S   S V++K+++G+LE I  +   N+   L      G++ +
Sbjct: 379 IRSAYYFGAQGVILCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVL 438

Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP------------ 257
           G +  +K     E++      L++G+EG GLRP  + + T +  +               
Sbjct: 439 GGTIANKAVPLSEVEIGVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVFVEGAGADA 498

Query: 258 -----GI-------------IKALNVSNAAAVALYITQ 277
                G              +++LNVS AA V LY   
Sbjct: 499 DAGEEGDSSSSNQDLRSFLAVESLNVSVAAGVLLYHLA 536


>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 248

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 9/233 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHP----FPVKTVPPQTIDK 103
           + G+  V+A       ++ +L      K     L              P + +       
Sbjct: 9   IGGLPAVAALFQRDPGRVERLFFNDRMKAEAQPLCQQMAAARKPFRHVPTEELTKVAGTP 68

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + G           T      + +  +  + L++LD + +PHN+GAI R+   F    +I
Sbjct: 69  LHGGIVAVCQPKGLTPFEAVKSFNWAKAKEPLVILDGIGNPHNLGAIARTMAFFGLGRLI 128

Query: 164 TTKRYSPSESAVLAKSASGA--LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +     +  +  A   +         Y   +      +    +      L +       
Sbjct: 129 VSDHPEQALPSDAAFRIAEGGLEWVDVYQVANLGKALPRLKPHYQVIGTALGAHRSMKDT 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +AL+LG E +GL   T      +  +   G +++LNVS  AA+ ++
Sbjct: 189 FSSNDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILIH 241


>gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
 gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
          Length = 156

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G ++R          +      P E A + ++     E+   +  
Sbjct: 1   MINVVLVEPEIPPNTGNVIRLCANTGVQLHLVEPLGFPLEDARMRRAGLDYHEYANMLVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
                 L +      +   +++  K             L+ G+E +GL  + +      +
Sbjct: 61  PGWEAFLDRQQPNPQRCFAMTTKGKHSPFDVKFQAGDYLMFGSETRGLSEEVRNWFAREN 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN+ AV +Y      
Sbjct: 121 WLRLPMRPESRSLNLSNSVAVMVYEAWRQL 150


>gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMINDVRSLNLSNSVAIVLYEALRQL 148


>gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 247

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 5/161 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R   + ++++ V+DPHN  A+LR+A AF    +      +P     L    + 
Sbjct: 38  MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               + +        A  K   +         +   P+     +   AL+ G E  G+  
Sbjct: 98  QWLTLHHKPDIKTAIADLKSQGYQVYASY-FGEGTIPVSDIDLSQPTALLFGNEHSGVSE 156

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279
           +    A     + M G +++ N+S AAA+ALY      +  
Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197


>gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
          Length = 242

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 10/236 (4%)

Query: 45  QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTI 101
           + +     G   V   L  ++   +   LL  +N L  L      LP   PV +VP   +
Sbjct: 3   RQQRFIAEG-KVVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           D + G   VH+G+         P L  +        L++VL  +++  N+G+I R+A AF
Sbjct: 62  DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  +           + + GA   +PY     + D    +   GF  + L+  + 
Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + + +    ++ AL+LG EG+GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 235


>gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           ferrodiazotrophum]
          Length = 259

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 100/258 (38%), Gaps = 33/258 (12%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTIDKI 104
           G H V   L+     +  L   ++           R           PV  +P   ID +
Sbjct: 3   GFHPVMEVLSLRPDSVVHLYLREDRHGESRMDGRRREIIRVARSRGIPVDFLPGPAIDGL 62

Query: 105 VGKEAV--------------HQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVND 143
             +  V              HQG+                           L+ +D V D
Sbjct: 63  FHRGQVSATASGGTGKGLPSHQGVVARIEEVATFPNLDDFLEASPGIAPSPLVAVDGVQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LR+  A    G++  +R     S  +AK+++GAL  +P +RI NL+ +L+++ 
Sbjct: 123 PRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKTSAGALFTLPLVRIGNLSGSLRQLK 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+    L        E  +    + L++GAE KG+     + A     L M G +++L
Sbjct: 183 KEGYAIAALDLSGDPLPEGPLPGP-LVLVVGAEEKGVTRPVLDLADWRFRLPMKGKVQSL 241

Query: 264 NVSNAAAVALYITQNHFA 281
           N+S AA + LY      +
Sbjct: 242 NLSVAAGIFLY---RQIS 256


>gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 275

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 12/249 (4%)

Query: 41  RHTS---QPENLFLYGVHTVS--AALNNPSRKI--FQLLATKNALARLDWDAN-LPHPFP 92
           +      +       G   +   AA ++  R I    +L  ++ +  L       P   P
Sbjct: 23  KERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPDVP 82

Query: 93  VKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           +        D I G      V      + AP     +  +  S L++    +++  N+G+
Sbjct: 83  LYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMGS 142

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  D ++              + + G++  +P+ R     + + ++ +  F  
Sbjct: 143 LFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFVV 202

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            GLS      +       + AL++G EG+GL           A +     + +LNV+ AA
Sbjct: 203 WGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQI-HTARIRQRPGLDSLNVAMAA 261

Query: 270 AVALYITQN 278
            +AL+   N
Sbjct: 262 GIALHQVAN 270


>gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 151

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLQRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+       +    ++   +P          A + G E +GL  +  +   A  
Sbjct: 61  ADLASCLES--LGHPRLFAFTTKGSRPFHDASFVAGDAFLFGPESRGLPAEVLDALPADQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 131

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      +AL+LG+EGKG      + A  +A + M G I +LNV++A A+ ++     
Sbjct: 64  HKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGAIGMWEVSKQ 122


>gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 7/261 (2%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           S  A    +    +  ++   +     +       G   +   L +   +   LL  +N 
Sbjct: 30  STIAIDDPSDPRVEPFRNVRDRDLVGREG--FIAEGTVVLDQLLVSRRFRPTSLLILRNR 87

Query: 78  LARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQ 133
           LA L       P   P+        D I G       LA        P+          +
Sbjct: 88  LAGLAERLARFPGDAPIHVADQAVFDGIAGFAVHRGVLAHGAERGARPSAADTIAAAGGR 147

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++   +++  N+GAI R+A AF    ++              + + G    +P+ R  
Sbjct: 148 PIIIAVGLSNHDNLGAIFRNAAAFGAGAVLCDTTSCHPLYRKALRVSVGTALTVPWCREG 207

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                +    + G++ + LS   + PL   +   + AL LGAEG+GL P           
Sbjct: 208 TGESLVAACRAAGYRVLALSPAGETPLAGLVTAGRTALCLGAEGQGLSPDLMRAV-ETVR 266

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   + +LNV+ +AA+ L+
Sbjct: 267 IEMAPGLDSLNVATSAAIVLH 287


>gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 231

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 24/237 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              Q     + G H V  AL             K+ +  +       +   V        
Sbjct: 17  FRDQENFFIIEGFHLVEEALK------------KDIVVEIYASVEFKNAIKVSQ------ 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             I+   + ++      A      ++    S+ ++VL+++NDP N+G ++RSA AF  + 
Sbjct: 59  -SIIDSISSNKTSQPIIAICKKMNVNYEVKSKRILVLENINDPGNLGTLVRSAFAFGFND 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +    +++ GA  ++  I++ N  D L+ +H++      L SD+ +   
Sbjct: 118 VIVEG--VDIYNHKFLQASQGAFFYVNLIKVKNAVDFLKSLHNYQIYVTTLRSDAFEYDA 175

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E     +AL+LG E  G+  + ++ A+ + ++      ++LNV++A A+ L   +N
Sbjct: 176 VENPKW-LALVLGNEANGISLEMEKLASKLIYIKT--NFESLNVASAGAILLNHFKN 229


>gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 158

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +     F+    ++ +              L+ G E +GL  +  E+      
Sbjct: 64  QAFVEYLEKERQTFRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
 gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
          Length = 309

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 90/305 (29%), Gaps = 55/305 (18%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++K+ +  +  +   +   + L G   +  A+                L  L        
Sbjct: 5   FRKLLATVKSKKRRDKEGLILLEGKRLIKDAIKAGGILESLFFCHVEDLEGLPLQETTAE 64

Query: 90  PFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            + VK        D +  ++ +      +   L +P         L ++ D++ DP N+G
Sbjct: 65  LYKVKHKDILDWSDTVTPQKVIAIFTRPDVNRLYTPEYADAELLPLTLICDNIRDPGNMG 124

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK------- 201
            I+RSA A  C  ++ TK       + + ++ + A  H+P I+                 
Sbjct: 125 TIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIKDLTWDLIPNYLEPDTVV 184

Query: 202 -------------------------------------------MHSWGFQTIGLSSDSKK 218
                                                             T      +  
Sbjct: 185 FPADANVDVNNKFTLFHPPLSNVRRSVAARRRQTEDPDTSGDEDFRHDLPTSLPELVAVP 244

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      AL++G E +GL  ++     +T      + M   + +LN + AA+V L+
Sbjct: 245 YYSTHWVGGSTALVVGGETEGLSLESLLLCEKTGGCRVFVPMLRNLDSLNSAVAASVVLF 304

Query: 275 ITQNH 279
             +  
Sbjct: 305 EAKRQ 309


>gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 174

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R   A      +        ++A L ++     + +   R  
Sbjct: 22  LHVVLYRPEIPPNTGNIQRICAATGAMLHLVGPIAFRLDNAALKRAGMDYRQWVDVQRYD 81

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-A 252
           +      +M   G + I +S+ + +            L+ G+EG GL  +  +       
Sbjct: 82  DW-AHCLRMQPLGVRWIPISTKATQGYHTMRYQAGDRLLFGSEGSGLPAEIHQALGHNAV 140

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M    ++LN++N  AV LY       
Sbjct: 141 RVPMLPRARSLNLANTVAVVLYEALRQLN 169


>gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 188

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 4/166 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              PL    L     S   + L       N G I+R A    C   +        E   L
Sbjct: 19  YIRPLYCAFLFGESASMFHIALHEPQIAPNTGNIIRLAANTGCKLHLIEPLGFNFEEKKL 78

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++      H           A         +    ++   +P            + G+E
Sbjct: 79  RRAGLDY--HDLTNITRYPDYATFLDAMGDRRIFACTTKGSRPHSDINYQAGDVFLFGSE 136

Query: 237 GKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             GL    +          + M    ++LN++N+ +V  Y      
Sbjct: 137 TSGLPDDIRNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQL 182


>gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
 gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
          Length = 154

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLTCVTRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L  M               +P  +        L+ G E +GL  +  E+   + 
Sbjct: 61  KDYASFLVAMAGRRIMACTTKG--SRPHSELSFEKGDVLLFGPETRGLPMEIIESLPTSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G  ++LN+SNA A+  Y      
Sbjct: 119 RLKIPMAGTSRSLNLSNAVAIISYEAWRQI 148


>gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
 gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12J]
 gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
          Length = 156

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVILVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L+       +   L++    P            + G+E +GL  + +E   A+ 
Sbjct: 61  ADWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDWFVFGSETRGLSEERREWFPASQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
          Length = 164

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  D   ++ G E  G+      +   +   + M G I++LN+SN+ A+ LY    
Sbjct: 86  YTDVQYEDDCYIMFGKESAGIPESILQKYQDTAVRIPMWGDIRSLNLSNSVAIVLYEALR 145

Query: 279 H 279
            
Sbjct: 146 Q 146


>gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652]
 gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652]
          Length = 274

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALARL 81
           +     + +   ++   T + +     G   +  ++ A       +  ++L  +N +A +
Sbjct: 12  DDPRVAEFRDIRER-DLTGREKRFIAEGTVVLRMLAEAHAEGRGFRAEKILLLRNRVAGI 70

Query: 82  DWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVL 138
               +  P   PV       +  IVG       LAL           +DA+    L++V 
Sbjct: 71  QPILDRFPADVPVYVAEADALAGIVGFHLHRGVLALGRREERDGAALVDALPERALVLVG 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLRVPHRRGGKALDL 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +       ++AL++G EG+GL           A +    
Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGLPEALLARF-HSARIPQSD 249

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 250 ELDSLNAATATGIALF 265


>gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649]
 gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649]
          Length = 272

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 6/261 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +   K++ +  +  R   +     + G   +  AL+   R      + +  L   + 
Sbjct: 11  SPANPRLKQLVALRR-RRARDEARVTVVEGFEELGLALDAGVRPRTVFYSPELMLDAAEQ 69

Query: 84  DA----NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                           V     +K+  +E     +AL  +         + +S LL+V +
Sbjct: 70  LKVVDGARAAGVETIKVSRSAFEKVAYREGPDGFIALVPSVRAGLADLKLPSSPLLLVCE 129

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +  P N+GA+LR+A A   D +I                 S        +  + L + +
Sbjct: 130 GLEKPGNLGAMLRTADAAGVDAVIA-VDPVTDWGNPNVVRGSKGTVFSIPVASATLGETI 188

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   G + I  + D++           +A+ +G E  GL  +    A     + M G 
Sbjct: 189 DWLREGGIRLIATTPDTETLHTDADLTGGVAIAVGTEKFGLTDEALRAADLRVRIPMHGQ 248

Query: 260 IKALNVSNAAAVALYITQNHF 280
           + +LN S AAA+ +Y      
Sbjct: 249 VNSLNASAAAAIVVYEAVRQR 269


>gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
 gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 158

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE     R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLERASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +  M  +  + + LS+ ++    +        L+ G E  G+     + A   
Sbjct: 61  HLDWQSFIDTMQRFNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPDYVYKAADYA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LTIPMLPHARSLNLAISVAMVTGEALRQI 149


>gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 158

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +    G++    ++ +              L+ G E +GL  +  E+      
Sbjct: 64  QAFVEYLEKEREGYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 398

 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 111/327 (33%), Gaps = 60/327 (18%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPS 65
           K+  + +    +           + + +     SR+  + P   ++YG ++V AAL +  
Sbjct: 67  KEGRRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANPLLEYVYGTNSVLAALQSNK 126

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ------------- 112
           R+ F  L    +L     + +      +       ++ +      +              
Sbjct: 127 REYFTKLYYHGSLQPDIENLSKSRSVELVKTDKHNLNLLTKDAVHNNVVLETKPLKPIEI 186

Query: 113 ------GLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                      T  +   +L           +  +   L + LD V DPHN+GAI+RSA 
Sbjct: 187 NNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLGVYLDEVMDPHNVGAIIRSAY 246

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D ++ +++     S  + K++SG++E +P   +       QK    G  +   S  
Sbjct: 247 FLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKPLTFFQKSSEEGGWSFISSCI 306

Query: 216 SKKPLEQE-----------------IKNDKIALILGAEGKGLRPKTQETATSMAHLHM-- 256
           +   + ++                  K   + L++G E  G+R   +  +     +    
Sbjct: 307 TDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENTGIRTNLRMRSDFYVEIPFGR 366

Query: 257 ----------PGIIKALNVSNAAAVAL 273
                        + +LNVS A A+ L
Sbjct: 367 DSESDSNRQAISTVDSLNVSVATALLL 393


>gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 178

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                +   L++VLD V   HNIGA+ R++ AF  D I      +      + K+A GA 
Sbjct: 19  EFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 78

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLR 241
             + +    +  DA+ ++ + G+    +                + K A++LG E KG++
Sbjct: 79  YTVDWKYFQHTEDAVNELRTMGYTLFAIEQCEGSILLDKLVLEPDKKYAVVLGNEVKGVK 138

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +          +   G   +LNVS  A + ++   
Sbjct: 139 QEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWEFA 174


>gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              T  L+ M     +   L++   + +           + GAE +GL P+ +ET     
Sbjct: 61  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 121 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 149


>gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 162

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              T  L+ M     +   L++   + +           + GAE +GL P+ +ET     
Sbjct: 61  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 121 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 149


>gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 189

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    R 
Sbjct: 28  MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRH 87

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              T  L+ M     +   L++   + +           + GAE +GL P+ +ET     
Sbjct: 88  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPAQ 147

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 148 RLRLPMLPNQRSLNLSNAVAVTVYEAWRQ 176


>gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 272

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 30/278 (10%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K+ + +  ++++++        S+  +  + GV  V+ A+ +  +           L+  
Sbjct: 4   KISKRNARFQELEALLTNRSKRSRSGHFLVQGVRPVTLAVEHGWQVDAFCYEDGRRLSDW 63

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDH 140
                         +    + ++  K      L    +          V    L +VLD 
Sbjct: 64  ARGLLHRTGPEHYALSADLLAELAEKPEGEAELVAVVSVPDDDLDRVPVPADFLGVVLDR 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
              P N+G+I+RSA AF   G+I T   +        ++ +G+L  +P +R  +  + L 
Sbjct: 124 PTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGSLFAVPVVRAPSHREVLD 183

Query: 201 KMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           ++ +W              D    +        + L++G E  GL    +E+A ++A + 
Sbjct: 184 QVAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAWRESADAVASIP 243

Query: 256 MPGIIKALNVSNAAA------------VALYITQNHFA 281
           M                          V LY  +   A
Sbjct: 244 M------------VGAASSLNAANAASVVLYEARRQRA 269


>gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
 gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
          Length = 246

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   + +VL+ + +  N  AI R+  A                       A        
Sbjct: 64  NRTRSIAVVLEGITNEGNEQAIYRTMDALGFQTAHRIPSPLYRLKTCGRTDAGAMKWIDI 123

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S      Q            S +  K L+    ++K A++LG+E +G+  +     
Sbjct: 124 ESWKSTEECISQLKSCGYKILATSSENKTKTLDSFDFSNKTAVVLGSEQEGISKEAMNLV 183

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            ++  + M G +++ NVS AAA+ LY       +
Sbjct: 184 DNVFRISMVGFVESYNVSVAAAIILYHIYQDRIR 217


>gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ + D  N+ A  RSA A     +                 + GA + +  
Sbjct: 151 RSYSVCLVVEGLTDFGNVSAAFRSADALGVQSVHVISCEDNKRYRDNRHVSMGAEKWLDI 210

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248
              S+  +    +   G++    S  S      ++  +   A+++G E  G+     + +
Sbjct: 211 ELWSSPAECFDALKKRGYRIACTSLGSDSVSVYDMDWSHPTAIVVGNETMGISDVALKLS 270

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 271 DMHCSVPMKGMVDSFNVSVAAGILMHHA 298


>gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062]
 gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062]
          Length = 151

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 52/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G +LR A        +      P     L ++    +E     R  + 
Sbjct: 4   IALYQPDIPQNTGTLLRLAACMDVTVHLIEPAGFPLSDHALKRAGMDYIERAKLQRHMDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +   +   + I +++   +P  Q        +++G E  G+  +  + A S   + 
Sbjct: 64  ESFREWQLAEKRRLILMTTKGTRPYTQFAFKKDDLILMGRESSGVPEEIHQLADSRLLIP 123

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LN++ +  + L      
Sbjct: 124 MKNGMRSLNMAVSTGMVLGEALRQ 147


>gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
 gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
          Length = 168

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 2/145 (1%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
                  P N G ++R          +      P + A + ++     E+       +  
Sbjct: 17  FSSPPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWD 76

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHL 254
             +        +    ++                 + G+E +GL  +  E         L
Sbjct: 77  AFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQRVRL 136

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN+SN  AV ++     
Sbjct: 137 PMRPDNRSLNLSNTVAVVVFEAWRQ 161


>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
          Length = 495

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 100/308 (32%), Gaps = 77/308 (25%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100
           + F+YG H V +A+    RKI+ L   +    +L            +     VK V  + 
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 101 IDKIVGKEA--VHQGLALET---------------------------------------- 118
              +        HQG+  E                                         
Sbjct: 198 SQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGTS 257

Query: 119 ----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                                      ++LD + DPHN+GAILRSA  F  D +  + R 
Sbjct: 258 GLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRN 317

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226
           S   S V+ KS+SGA EHIP I I +    +      G++       +    + + KN  
Sbjct: 318 SAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIV 377

Query: 227 -----------DKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAA 270
                          L+LG EG GL  + +  A +   +      +   + +LNV+ A+ 
Sbjct: 378 SSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASG 437

Query: 271 VALYITQN 278
           +       
Sbjct: 438 ILCQAFMR 445


>gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 159

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+  A   +  +            + ++      H+ Y+     
Sbjct: 10  VVLYQPEIPQNVGNIARTCAAVGAELHLVRPFGFRWGDPRMKRAGLDYWPHVRYVLHDTW 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+ +          +   ++  E         L+ G E +GL P+  E    +  + 
Sbjct: 70  AAFLETLGPQDRLFAFTTKGERRYTEVA-YRPGDYLLFGPETRGLPPEILEVWPRLV-IP 127

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LN+S A  VA+Y     
Sbjct: 128 MPGPVRSLNLSVAVGVAVYEALRQ 151


>gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 205

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 10/201 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +   + +  H F +  V  + +  +                  + +        L++  +
Sbjct: 14  KKIIELHQGHVFIISEVLYKDLSTL----GNTLPCLGIIDLPKTASTIDYSVDTLIL--E 67

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 68  NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL 127

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K     F T    S S    +    +     ILG EG+G      E A     +  PG 
Sbjct: 128 PKFDIPVFVTSSHRSTSLYSKD---LSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 183

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LNV+ A ++  +      
Sbjct: 184 QESLNVAIAGSICFFEMVRQR 204


>gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
 gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
          Length = 156

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A L ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    + K      +    ++       +         + GAE +GL     +      
Sbjct: 61  ADWAAFVAKESPDPARMFAFTTRGSGRFHEHAFQSGDWFVFGAETRGLPDSVLDQFANQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  A+ ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1]
 gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1]
          Length = 177

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      I        +   L ++     +++ +  + + 
Sbjct: 28  VVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAGLDYWQYLDWEPVPSW 87

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254
               ++++   F      +                L+ G E  GL     +        L
Sbjct: 88  DALCERLNPERFFFFSKFAKRTVWE--AEFALGDVLVFGRETSGLPASILKPDDPRSLRL 145

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+S  A +ALY  Q  
Sbjct: 146 PMREQVRSLNLSVTAGIALYEHQRQ 170


>gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9]
 gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9]
          Length = 159

 Score = 81.8 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   + L       N G I+R       D  +        E   L ++     +  
Sbjct: 1   MFSKLMFDIALYEPEIAPNTGNIIRLCANCGADLHLIEPLGFDLEEKKLRRAGLDYHDLA 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              R  +     + M           +            +   LI G E +GL     E+
Sbjct: 61  HVHRHKDFAAFKEAMAGRRLFACTTKT--TNYHTNAQFAEGDVLIFGPETRGLPADFIES 118

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M    ++LN+SNAAA+  Y      
Sbjct: 119 LPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQL 153


>gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708]
          Length = 153

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      ++
Sbjct: 4   IVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESM 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G +                 L+ G+E  GL      T  S  ++ 
Sbjct: 64  EAFQTIHQQRGGRLLGFTVRGSFNYINYQFQADDWLLYGSETTGLPATVLSTCDSTLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           +    +++LN+S + A+ L+ ++   
Sbjct: 124 IDEPGVRSLNLSISVAIGLFESRRQL 149


>gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
 gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
          Length = 158

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +     ++    ++ +         +    L+ G E +GL  +  E+      
Sbjct: 64  QAFVEYLEKERGDYRIFACTTKTTGHHVDANFHKGDVLLFGPETRGLPAELIESMPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 219

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 1/158 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +   R + + + ++ V   HN  A++RS  AF        +              +   
Sbjct: 24  DILKDRTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNIAMGAQQW 83

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
              P    +       +   +        +D    L+    +DKIAL  G E  GL  + 
Sbjct: 84  VTTPRYNTTTECIDTLRKDGYKIIATSPHTD-SYLLDDFKIDDKIALFFGTEKSGLSQEV 142

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + A     + M G  ++LN+S +AA+ L        K
Sbjct: 143 LDKADGYVKIPMVGFSESLNISVSAAILLQHLTTELKK 180


>gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 176

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
               +   L++VLDH+   +N+G++ R++ AF  + I      +   +A + K+A GA E
Sbjct: 17  FKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEE 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242
            + +    +  +A+ K+   G+    +       +       K  K A+++G E KG++ 
Sbjct: 77  TVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +       +   G   +LNVS    + ++      +
Sbjct: 137 NVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175


>gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
          Length = 206

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 87  YTRPTCILMGQEKTGITQEALALADQDIIILMIGMVQSLNVSVASALILYEAQRQR 142


>gi|195377529|ref|XP_002047541.1| GJ13500 [Drosophila virilis]
 gi|194154699|gb|EDW69883.1| GJ13500 [Drosophila virilis]
          Length = 354

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/274 (8%), Positives = 60/274 (21%), Gaps = 49/274 (17%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +     + + + G   +  AL    +      + ++
Sbjct: 117 NLEFTRLTLQDPLMSTLLTEVRSRKRRDNNKQIIIEGRRLIEEALQCRLKMHSLFFSQRD 176

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            LA L              +  VP   +      + V      +                
Sbjct: 177 QLALLRERVAQAQQEDNTKIYKVPQHDLKTWSRCQVVVTHGCCDPW-------------- 222

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
                            LR          I            +    +            
Sbjct: 223 -------------ESKALRGGCGGQFRLPIHDDVTWEQLPLHIPPEVADHCHVFIAENNP 269

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---- 249
              + L        +       +              LI+G E  G+     +       
Sbjct: 270 KKPENLAGNTVDYAEVGQTGVHN-------------ILIIGGESHGVSEDAYKFMQLVGS 316

Query: 250 --SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++ +   + +LNV +A  + L+  +    
Sbjct: 317 RGKCVYIPLAAGMDSLNVVSALTLILFELRKKLT 350


>gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
 gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
          Length = 158

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K    G + +  S  + K            ++ G E KGL  + 
Sbjct: 56  YWSEVEIHYWPDLPALKQAYPGGRFVYTSKKADKSYLAFTFLPGDFIVFGKETKGLPEEL 115

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E  A +   + +PG +++LN+S +A + LY     
Sbjct: 116 IEANAQTAVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151


>gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 154

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPG-IIKALNV 265
           Q   LS+ + +     + +    L+ G E +GL     +E A +   + MPG   ++LN+
Sbjct: 78  QFWYLSTKAPRSHWDAVFHAGDYLVFGPESRGLPESMLREHADTALTIPMPGEGARSLNL 137

Query: 266 SNAAAVALYITQNH 279
           S A AV LY     
Sbjct: 138 STAVAVVLYEGLRQ 151


>gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115]
 gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115]
          Length = 397

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 48/319 (15%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAAL 61
            +  K+ +     + +   K    + D        +++R   + P    ++G   V AAL
Sbjct: 74  HVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEERIFGAQAVLAAL 133

Query: 62  NNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              +R+    L   N   + +   +        +K V  +    ++    VH G  L+ A
Sbjct: 134 KANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCNNNVHNGYVLKAA 193

Query: 120 PLLSPTLDA------------------------------VRNSQLLMVLDHVNDPHNIGA 149
              +  L A                                +  L + +D V+DPHN+GA
Sbjct: 194 KFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVYIDGVSDPHNLGA 253

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS+     D +   ++     ++V +KS++G +E +P   +      L+  +  G+ T
Sbjct: 254 IIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQFLEAANENGWAT 313

Query: 210 IGLSSDSKKPLEQEIK----------NDKIALILGAEGKGLRPKTQETATSMAHL----- 254
           +   S   K                      LI+G+EG G+R    + ++ +  L     
Sbjct: 314 VSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDRSSHLVSLKSQRK 373

Query: 255 HMPGIIKALNVSNAAAVAL 273
           ++   + +LNVS A AV L
Sbjct: 374 NLDSSVDSLNVSVATAVLL 392


>gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 247

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 5/161 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R   + ++++ V+DPHN  A+LR+A AF    +      +P     L    + 
Sbjct: 38  MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               + +        A  K   +      L  +   P+     +   AL+ G E  G+  
Sbjct: 98  QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEE-TIPVSDIDLSQPTALLFGNEHSGVSE 156

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279
           +    A     + M G +++ N+S AAA+ALY      +  
Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197


>gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 172

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +K  L  G E +GL   T      +A +   G + +LNVS AA +ALY     
Sbjct: 116 LPEKACLAFGHEDRGLSATTLAACDVVAFIPQLGKVGSLNVSTAAGIALYELNRR 170


>gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 274

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A N        +L  K     +  D    
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRARNAGYEMRSMMLTAK--WFDVMRDVIDE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVND 143
              PV  V P+  +++ G   VH+G          P +D        + + + V + + D
Sbjct: 75  ERAPVYAVTPELAERVTGYH-VHRGALAAMRRRPLPAVDTLLAPATGDVRRVAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+ +  D L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLG 193

Query: 204 SWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF T  L    +           ++K+ALI G EG GL  +    A +   + M   +
Sbjct: 194 AAGFTTAALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
 gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
          Length = 169

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R+ VA      +            + ++     + +     
Sbjct: 1   MMNVVLLEPEMPANTGNIGRTCVATGTRLHLIEPLGFKLSEKAIKRAGLDYWDKLDVQVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
           ++  D L +           ++ + +   +        L+ G E  G+  +         
Sbjct: 61  ADYQDFLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCYLMFGKESAGIPEEILVANEPYC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+SN+ ++ LY     
Sbjct: 121 VRIPMWGEIRSLNLSNSVSIVLYEALRQ 148


>gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 155

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFHLHIIQPLGFTWDDKRLRRAGLDY--HEFAAIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A     +   +   L++  +             L+ G E +GL P   +    T 
Sbjct: 59  HHRDYAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDYLLFGPETRGLPPSILDALPMTQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
 gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
          Length = 176

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
               +   L++VLDHV   +N+G++ R++ AF  + I      +   +A + K+A GA E
Sbjct: 17  FKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEE 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242
            + +    +  +A+ K+   G+    +       +       K  K A+++G E KG++ 
Sbjct: 77  TVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +       +   G   +LNVS    + ++      +
Sbjct: 137 NVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175


>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
 gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
          Length = 301

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 41/295 (13%)

Query: 6   KKKSEKIFSLK----DSHYAK--LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
             +++   + K    D H  +  L R+H    + ++ + +   TS      ++G+     
Sbjct: 15  SSRNQSFINGKCGWIDIHQLRYILTRHHSGSTRYETKSTRKSGTSSRREF-IFGIGPCVL 73

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL++  RK+F++   + A    +    L   FPV                    + ++  
Sbjct: 74  ALSSGRRKVFKIYMNEEAN---NTTRILLWKFPVSI----------------FVILMKRM 114

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                         L++ LD + DP N GAI+R++     D I+  K+ S   S V++K+
Sbjct: 115 MSYKGINHIASLHPLVLALDEIQDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKA 174

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSKKPLEQEIKNDKIALI 232
           ++GA+E     +  +L   LQ+  + G+  +G                 +   +    L+
Sbjct: 175 SAGAMEVFNVYQTPDLPKFLQERAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTVLV 234

Query: 233 LGAEGKGLRPKTQETATSMAHL-HMPGI-------IKALNVSNAAAVALYITQNH 279
           LG EG+GLR   Q+  T +  +             + + NVS AA + ++    +
Sbjct: 235 LGNEGRGLRNTVQQQCTQLLSIYPHQAQNSFQSIDLDSFNVSVAAGILVFSLLKN 289


>gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 171

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  D     +L + L   + P N G ILR          +            L ++
Sbjct: 1   MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN++ + A+          +K
Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164


>gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 180

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + ++L ++   +N+G++ R+A A   D +I T   +      + K+A GA E + +
Sbjct: 25  QKHPVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDW 84

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
              ++  + L  +   G    GL          +IK D   + LILG E  G+     + 
Sbjct: 85  EYYTHPEEILGVLKDSGVTICGLEITENSRPYTDIKKDDFPLCLILGNEVDGIDDDVLQF 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   G   +LNVS AA VALY    
Sbjct: 145 CDHVFEIPQYGTKHSLNVSVAAGVALYEMVK 175


>gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 233

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           A     + I +++                LP+     TV  + +D+I   +     + + 
Sbjct: 2   APERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSARELDRIAQDKNHQGYVIIR 61

Query: 118 TAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           T      +L   +  Q +       ++LD + DP N+G +LR+A       ++ + R + 
Sbjct: 62  TKQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTS 121

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229
             + V+ K ++GA+ HI   R++NL   +  +    +  +    + ++ + + + +  ++
Sbjct: 122 PITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWILATDEEGEEGIWETLPDVSQM 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           A+I+G EG+G++    E A  +A + + G + +LNV  A  + L
Sbjct: 182 AVIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225


>gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 200

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 2/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +S   +VL     P N G I+R          +      P + A + ++     E+    
Sbjct: 43  HSMFNVVLVEPEIPPNTGNIIRLCANTGATLHLVEPLGFPLDDAKMRRAGLDYHEYAQMR 102

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
              + +  L        +    ++                 + GAE +GL     +    
Sbjct: 103 VHQDWSTLLATQQPDPARMFAFTTRGSSMFGDRAFQPGDWFVFGAETRGLCDTVLQHFAV 162

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L M    ++LN+SN  AV ++     
Sbjct: 163 DQRVRLPMRAGNRSLNLSNTVAVVVFEAWRQ 193


>gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 269

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 7/234 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +       G   V   L +     +I  +L +   LA L          PV   P   + 
Sbjct: 29  RRGRFVAEGE-VVLRVLLSGRARFRIESVLLSPERLASLRPALAALTDAPVYLAPRAVMS 87

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + G   +H+G+        +P  +        LL+ L  + +  N+G + R+A AF  D
Sbjct: 88  ALAGFP-IHRGVLAIGRSGETPPAESLVPPGPALLLGLVGLANHDNVGGLFRNAAAFGAD 146

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++              + ++G    +P+ R+ +    L      G   + L+    + +
Sbjct: 147 AVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALLALCERHGIVPLALTPGGGEEI 206

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     +  L+LG EG GL       A     + M   + +LNV+ A AVAL+
Sbjct: 207 AQLPPLPRAMLLLGTEGTGLPDALMARA-RRVRIAMAPGVDSLNVAAAGAVALH 259


>gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 12/234 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            L G+  V   +    +KI  +   K   ++      D              + +++   
Sbjct: 47  ILSGIKPVLDLIEKEPQKIDTIFLQKGLCSKEYQKVLDLCRQTNIRFIFTTSKVLNRFC- 105

Query: 107 KEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+           L+            L++V D + DP N G I+R+  +    
Sbjct: 106 -LTNHQGIVARLFESGFIELEDLFDKVPDAPLPLIVVFDQIQDPGNAGTIIRTLYSLGGA 164

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKP 219
           G+I  K           ++A G LE +P  +  NL+ A++  +               K 
Sbjct: 165 GVIIPKHNGVFLGQDARRAAVGCLERLPISKAINLSRAIETANEKGFHIYGTSIEKDSKN 224

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + +        LILG+E  G+R + ++   ++ H+ M   + +LNV+ A  + +
Sbjct: 225 VFEAELKFPALLILGSEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGIII 278


>gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581]
 gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM
           2581]
          Length = 162

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        +   L ++      H      
Sbjct: 1   MLDVVLFQPEIPPNTGNLIRLCANTGFRLHLIEPLGFELDDKRLRRAGLDY--HEWARVR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +             +   +S+  +    +       AL+ G E +GL     +      
Sbjct: 59  VHRDWDAFIEAVSPRRVFAVSTRGRTGYHEPAYGPGDALVFGPETRGLPQAMLDALPEAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ +Y      
Sbjct: 119 RLRIPMLPESRSLNLSNACAILVYEAWRQL 148


>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae]
          Length = 495

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 113/345 (32%), Gaps = 78/345 (22%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
             K+  +       H A  R   R  K+         +T+      +YG   V AAL   
Sbjct: 134 QDKRHSRRAEPTKHHRATERVPER-VKENVQVPDAIPYTTPASEF-IYGTSAVEAALRCS 191

Query: 65  SRKIFQLLATKNALARLD------WDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLAL 116
            R +++L   + +   L           L     VK        +   +     H G  L
Sbjct: 192 RRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSAGRPHNGCVL 251

Query: 117 ETAPLLS----------------------------------------PTLDAVRNSQLLM 136
           E +PL                                             D      +++
Sbjct: 252 EASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVL 311

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD + DP N+GAI+RSA     D II   R S   S V  K+++GA E++  + +SN  
Sbjct: 312 LLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEV 371

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLE----------------QEIKNDKIALILGAEGKGL 240
           D +Q+  + G++     +                                +++G+EG GL
Sbjct: 372 DFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGL 431

Query: 241 RPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
               +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 432 SRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476


>gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
          Length = 160

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A      +        E   L ++       +     
Sbjct: 1   MFHIVLVEPEIPQNTGNIARTCAATGAVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
           SN ++  +K        +   +  +K     I      L+ G E  GL  +  +      
Sbjct: 61  SNYSEFEEKNRGMPMFFLTTKA--EKCYTDVIYEPGSYLVFGKETAGLPLELLKANWERC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNAAA+ LY     
Sbjct: 119 VRIPMVDDARSLNLSNAAAIVLYEALRQ 146


>gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 163

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +   +VL     P N G I R+ VA      +           ++ ++     + +   
Sbjct: 1   MAHFHIVLHEPEIPANTGNIGRTCVAAGASLHLIEPLGFRLNEKMIRRAGMDYWDQLDVT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +  D + +            +   +        D   ++ G E  G+  +      +
Sbjct: 61  RYVDYEDFMSQHPGAKIYYASTKA--SRNYTDVSFEDDCYIMFGKESAGIPEEILRENDA 118

Query: 251 M-AHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   I++LN+ N+ A+ LY     
Sbjct: 119 TAIRIPMSPDIRSLNLGNSVAIVLYEALRQ 148


>gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
 gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
          Length = 171

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +   D     +L + L   + P N G ILR A        +            L ++
Sbjct: 1   MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN++ + A+          +K
Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164


>gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 219

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D+VN PHN+ A++RS  A     +    +           +A  +     +
Sbjct: 17  RQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDLHAVSKQRSI-HTRQHAAAGSSRWTRLH 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +                      +  +     +       A+ILGAE  G+  +    A 
Sbjct: 76  LWHEIKEPCSALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGAEWDGVSKEAIGEAD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +   G++++LNVS AAAV L+  +   +
Sbjct: 136 RTIMVQTHGMVESLNVSVAAAVILFEAERQRS 167


>gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 163

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +  L +VL     P N G I R+  A   D  +       +    L ++       + 
Sbjct: 1   MSDMDLHIVLVEPEIPQNTGNIARTCGALGADLHLVHPLGFSTSDRYLKRAGLDYWHLLK 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247
                +L   L    +     +   +      +     D++ L+ G E  GL  +   + 
Sbjct: 61  VHHHDSLQAFLNDYGNENLYFVSKKA--PLRYDHISYPDRLFLLFGKETAGLPEELLRKH 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   + M    ++LN+SNA A+  Y     
Sbjct: 119 RDTTVRIPMVAEARSLNLSNAVAIMAYEVHRQ 150


>gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 167

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 2/153 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            A +  ++ + L     P N+GA +R +  F  +  I        +   + ++A      
Sbjct: 15  HAYKGHRMRLALFQPAIPQNVGACIRLSACFGVELHIIEPTGFQFDDRAMKRAALDYGPL 74

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               R  +         S              PL   +      L+ G+E  G       
Sbjct: 75  AHMTRHPDWAAFQAARGSGRLILFTTKG--AAPLTDFVFQPDDTLLFGSETAGAPEHVHA 132

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A +   + +    ++LN+S +A + L+     
Sbjct: 133 AADARVFIPIRPDARSLNLSVSAGIGLFEALRQ 165


>gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 158

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +     ++    ++ +              L+ G E +GL  +  E+      
Sbjct: 64  QAFIEYLEKERENYRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
 gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
          Length = 158

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K    G + +  S  ++K            ++ G E KGL  + 
Sbjct: 56  YWSEVEIHYWPDLPALKQAYPGSRFVYTSKKAEKSYLAFTFLYGDFIVFGKETKGLPEEL 115

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E  A +   + +PG +++LN+S +A + LY     
Sbjct: 116 IEANAQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151


>gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 178

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA 
Sbjct: 16  EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + +    N  DA+Q++H  GF       +   +     +   + K A+++G E KG++
Sbjct: 76  NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + ++   N   K
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803]
 gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase slr0992
 gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803]
          Length = 153

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++     ++ 
Sbjct: 4   LVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSC 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + +      G   +G S                 L++G+E  GL    ++ +T +  + 
Sbjct: 64  EEFITHWRGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQMMRDLSTQLLCIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           MP   +++LN++++AA+AL+      
Sbjct: 124 MPHSEVRSLNLASSAAIALFEAGRQL 149


>gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC2047]
          Length = 154

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P N G I+R A    C   I        +   L ++      H      
Sbjct: 1   MLHIILFEPEIPPNTGNIIRLAANTGCQLHIIKPMAFEFDDKRLRRAGLDY--HEWANVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              + A    +    +   L++ +     +       AL+ G E +GL    +++     
Sbjct: 59  FYDSFAECCDNPAIERVFALTTKATCSYSETSYQAGDALMFGPESRGLPANIRDSLPEQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN+ AV ++      
Sbjct: 119 RLRIPMLPDSRSLNLSNSVAVVVFEAWRQL 148


>gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
 gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
          Length = 156

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 2/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G ++R          +        E   + ++     E+      
Sbjct: 1   MFNVVLVHPEIPPNTGNVIRLCANTGASLHLIRPLGFSLEDKHMKRAGLDYWEYATLKIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            N    L   H    +   +++       Q         I GAEG GL    +    A +
Sbjct: 61  DNWEAFLAAEHPNPERMFAMTTKGSTVFSQLKFIPGDWFIFGAEGSGLPDDIRSAFSAQN 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              L M    ++LN+SNA AV ++       
Sbjct: 121 RIRLPMRPDNRSLNLSNAVAVTVFEAWRQQN 151


>gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC
           35469]
 gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469]
          Length = 157

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDSDYLMFGPETRGLSSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum
           STM815]
          Length = 156

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + + + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDSKMRRAGLDYHEYAQMHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            N    ++       +    ++   +P            + GAE +GL     E      
Sbjct: 61  RNWDALIEMEAPNLARMFAFTTRGSRPFHSHAFLPGDWFVFGAETRGLPDAVVERFPNEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 268

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 12/260 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALAR 80
           +       +   ++     +       G   V   L +      S  +  LL ++    R
Sbjct: 9   DDPRIADFRDVRER-DLVGRQGAFMAEGE-VVLRLLVSRLGGADSHCLRALLLSEAQAQR 66

Query: 81  L-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLM 136
           L D  A LP   PV     + +D++VG       LAL  A  L      L+ +    L++
Sbjct: 67  LGDVIAALPQDVPVYVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLGERALVV 126

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
               + +  N+G I R+A AF  D ++              + + GA   +P+ R+++  
Sbjct: 127 AALGLTNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGA 186

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A++ + + GF+ + LS   ++PL + ++  ++A + G EG GL        T    + M
Sbjct: 187 AAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAM-TRTVAIPM 245

Query: 257 PGIIKALNVSNAAAVALYIT 276
                +LNV+  + + L+  
Sbjct: 246 AAGFDSLNVATTSGIVLHHL 265


>gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
 gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
          Length = 505

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 7/255 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R ++  +K  ++  + S    +     + G   V+  L    R    L            
Sbjct: 247 RPHNATFKDWRTLLKGSGLRKR-GEALVAGRRIVAEMLAC--RPELALGWVTGPQGPAPP 303

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +   P       +    + ++         L     P +          +   ++    D
Sbjct: 304 E--RPAGLTWWRLTKPLLAEL-DLFGTGGPLLWIRLPDIPQYDPHEAWPEGCTLVLPFQD 360

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGA LRSA+AF    +I T+  +        ++   A   +       L D   +  
Sbjct: 361 PENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLELRFGPALADLCGREQ 420

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +       +   L+Q     + ALI G EG GL             + M   I++L
Sbjct: 421 FAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLAGIATNWLQRR-RIPMSPRIESL 479

Query: 264 NVSNAAAVALYITQN 278
           N + + AVALY  + 
Sbjct: 480 NAAVSVAVALYEWRR 494


>gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus]
 gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 247

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 5/161 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R   + ++++ V+DPHN  A+LR+A AF    +      +P     L    + 
Sbjct: 38  MYEVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD 97

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               + +        A  K   +      L      P+     +   AL+ G E  G+  
Sbjct: 98  QWLTLHHKPDIKTAIADLKSQGYQVYASYLGEG-TIPVSDIDLSQPTALLFGNEHSGVSE 156

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279
           +    A     + M G +++ N+S AAA+ALY      +  
Sbjct: 157 EALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQ 197


>gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
 gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
          Length = 161

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            +   K     +      +                L+ G E +GL     E        +
Sbjct: 63  QELYAKYPDRRYFYATTKAKHTHSE--VKYEIGDMLVFGPESRGLPESLLEGVEETCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEAMRQL 146


>gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 223

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 4/159 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL- 184
           L   R   + +VL+ +   HN  A++RSA  +    +   +  +  +        +    
Sbjct: 26  LIQERTDYVTVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRNSYDMTSTVSQGARDWL 85

Query: 185 ---EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
               H      +  T    +   +        ++     + +++  K+A   G E  GL 
Sbjct: 86  SIHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLEKGKMAFFFGTELTGLS 145

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 A     + M G  ++LNVS  AA+ +Y      
Sbjct: 146 DLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRRL 184


>gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435]
 gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 156

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             ++ D         +        +    +   ++     I G E  GL    + + A +
Sbjct: 61  HDSIEDFFDATQGEYYLLTKFGKQTYSDFDFSKEDTDYYFIFGRETTGLPDWVKDKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   I++LN+SN AA+ +Y       
Sbjct: 121 ALRIPMSENIRSLNLSNTAALLIYEALRQQN 151


>gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 275

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 13/269 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +   +  +I  + D     L     DY +M     +SR   +           +S A++ 
Sbjct: 1   METPQRRQITEITDLADPALD----DYLRMTDVRLRSRVEVERGLFMAESFEVISRAMDA 56

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG----LALETA 119
                   L ++  LA+           PV       ++++ G   +H+G    +     
Sbjct: 57  GMAP-RSFLMSEKWLAKFAPLYEQFPEVPVFVGAEPLLEQLTGFH-LHRGALAAMQRPVL 114

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +   L A      + VL+++ D  N+GA  RSA A   D ++ T + +        + 
Sbjct: 115 PAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDAVLVTPQCADPLYRRSIRV 174

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAE 236
           + G +  +P+ RI N   ++  +   G+   GL+         ++    ++ +AL+LG+E
Sbjct: 175 SMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDHENLALVLGSE 234

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G GL   T         + M   + +LNV
Sbjct: 235 GHGLMGSTDRALDRRVTIPMQHGVDSLNV 263


>gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 320

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 85/261 (32%), Gaps = 38/261 (14%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPV 93
            ++    ++YGV++VS+ L    R I  +L  ++            +  +D       P+
Sbjct: 72  QAENNVDYVYGVNSVSSVLVKNERTIHSVLVNEHIRLNKKTRKQAYQYIFDTIKKRNIPI 131

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +T   + +D +VG    +  +   T   +      +++                   +  
Sbjct: 132 RTTSKKKMDDLVGGFPHNDIIMETTYRTMKKAKHFLKDY--------PQKEKRSNIYICL 183

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                     T   +S   ++                 + +    +         +I   
Sbjct: 184 HDI------DTPVLHSSVGTSEFLDFFHVNNMLTFMDDLKSCGFKILSTCCHPNDSIPND 237

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--------HMPG------- 258
              +    Q  KN+KI +ILG E KGL  +  E +    ++          P        
Sbjct: 238 RLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYINGHRTEVAPTPDLNHNGEF 297

Query: 259 IIKALNVSNAAAVALYITQNH 279
            + +LNV+NA A+ L+   +H
Sbjct: 298 TLDSLNVNNACAILLHHFTSH 318


>gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           EDL933]
 gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
           Sakai]
 gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           E24377A]
 gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC4024]
 gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11]
 gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1]
 gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989]
 gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. TW14359]
 gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E24377A]
 gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989]
 gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1]
 gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359]
 gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC1212]
 gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
 gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
 gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
 gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
 gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
 gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
 gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180]
 gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357]
 gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           117-3]
 gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1044]
 gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1125]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDFRAFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 156

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             N+    +  +   +        +    +      +   I G E  GL    +E  A +
Sbjct: 61  HENIESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   I++LN+SN AA+ +Y       
Sbjct: 121 TLRIPMSDHIRSLNLSNTAALLIYEALRQQN 151


>gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 238

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 2/160 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              + + R   + ++ + V+DPHN  A+LRSA AF    +      +P E      +   
Sbjct: 38  MYDVLSERTRYITILTEAVDDPHNQAAVLRSAEAFGIQDVHVVTGAAPFEP-NKWVTRHA 96

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                 +   S          +          +   PLEQ   +    L+ G E +G+  
Sbjct: 97  DKWLNVHKHSSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSE 156

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +    A     + M G +++ N+S AAA++LY      AK
Sbjct: 157 EALALADGKFVIPMNGFVQSFNISVAAAISLYEITK-RAK 195


>gi|194397115|ref|YP_002038555.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
 gi|194356782|gb|ACF55230.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
          Length = 86

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA +  +  
Sbjct: 36  ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILXFHL 85


>gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 180

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               + L     P+N G I R+         +       +E   L +S       +    
Sbjct: 27  MPFHICLVEPEIPNNTGNIARTCAVTGSVLHLIRPLGFSTEDKYLKRSGMDYWYKVDVRY 86

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +         F      +            +    + G E KGL P+  E    +
Sbjct: 87  YDSFAEFTASFPGGRFFCATTKAQRSYTS--FSYREGDIFVFGKESKGLPPEILETYRDT 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M  ++++ N+ N+AA+ LY     
Sbjct: 145 NIRIPMRPVVRSHNLGNSAAIILYEALRQ 173


>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 495

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 102/308 (33%), Gaps = 77/308 (25%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPPQT 100
           + F+YG H V +A+    RKI+ L   +    +L            +     VK V  + 
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 101 IDKIVGKEA--VHQGLALETAP-------------------------------------- 120
              +        HQG+  E +P                                      
Sbjct: 198 SQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGTS 257

Query: 121 ------------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                                      ++LD + DPHN+GAILRSA  F  D +  + R 
Sbjct: 258 GLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRN 317

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226
           S   S V+ KS+SGA EHIP I I +    +      G++       +    + + KN  
Sbjct: 318 SAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIV 377

Query: 227 -----------DKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAA 270
                          L+LG EG GL  + +  A +   +      +   + +LNV+ A+ 
Sbjct: 378 SSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASG 437

Query: 271 VALYITQN 278
           +       
Sbjct: 438 ILCEAFMR 445


>gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +      P +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPMGFPWDDKRLRRAGLDY--HEFTRVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++                L+ G E +GL  +         
Sbjct: 59  RHADYAAFMASEQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEILNALPPQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase,
           SpoU, predicted [Rhodopirellula baltica WH47]
          Length = 156

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      I        +   L ++     +++ +  + + 
Sbjct: 7   VVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAGLDYWQYLDWEPVPSW 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254
               ++++   F     S+                L+ G E  GL     +        L
Sbjct: 67  DVLCERLNPERFFFFSKSAKRTVWE--AEFALGDVLVFGRETSGLPASILKPDDPRSLRL 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+S  A +ALY  Q  
Sbjct: 125 PMREQVRSLNLSVTAGIALYEHQRQ 149


>gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148


>gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 158

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +    +VL     P N G I R          +  K     +   L ++      H+P
Sbjct: 1   MIDPPFHIVLVEPEIPPNTGNIARLCAGTQTHLHLVGKLGFSLDDRYLKRAGLDYWPHVP 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
             R  +L    Q      +     ++           +    ++ G E KGL  +  E  
Sbjct: 61  LHRWDSLEQLEQAYPEGRWWYTSKTAHLVHSQ--ATFHPGDFIVFGKETKGLPKELLERH 118

Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                 + M    +++LN+S +A + LY     
Sbjct: 119 PQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQ 151


>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 415

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 76/320 (23%), Gaps = 58/320 (18%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--------RKIFQ 70
            Y +     +   K+ +  +  +   +   + L G   ++ AL + +        R  + 
Sbjct: 88  RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYL 147

Query: 71  LLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL------------ 116
            L   + L + +          +    V PQ +  I  K    +                
Sbjct: 148 KLFPPDKLRKANLIKVNFDNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSL 207

Query: 117 -------------------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                                                   L A   +   + +    D  
Sbjct: 208 ICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSLDWD 267

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
            +   L +                 +       S  G +   P   +             
Sbjct: 268 IVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSGDEE 327

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHMPGII 260
                      +     E       A+++G E  GL  +     E +     ++ +   I
Sbjct: 328 DNTDKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDI 387

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN + AA++ L+  +   
Sbjct: 388 DSLNSAMAASILLFEGKRQI 407


>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
 gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
          Length = 249

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 76/241 (31%), Gaps = 16/241 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H +   L   +    +++AT+         A       ++ V  + +   +    
Sbjct: 2   LLEGTHLLQEVLRQGNAP-DEIIATEAWWQGHSALAERCVQARLRIVTDEVLRAALTTVT 60

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                 +     L            L+VLD + DP N+G +LR+A+A   + +       
Sbjct: 61  P---DGVACLSPLDRLPAVPPELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVD 117

Query: 170 PS------------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           P                   +        I  +R      A   +          +  S 
Sbjct: 118 PLGTKVLRASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASP 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P          AL+LG EG GL P  Q   T    L     +++LNV++AA   L   +
Sbjct: 178 IPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLLERR 237

Query: 278 N 278
            
Sbjct: 238 R 238


>gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
 gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
          Length = 189

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 1/157 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D     +L + L   + P N G ILR A        +            L ++    LE 
Sbjct: 26  DTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQ 85

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               R  +         + G + + LS+ +  P       +   L+ G E  G+     +
Sbjct: 86  AALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHD 145

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
            A     + M    ++LN++ + A+          +K
Sbjct: 146 NADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 182


>gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
 gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   L ++     +     R  + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
               + M           +            +   LI G E +GL  +  E+        
Sbjct: 64  AAFKEAMVGRRLFACTTKT--TNYHTNAQFAEGDVLIFGPETRGLPAEFIESLPLEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    ++LN+SNAAA+  Y      
Sbjct: 122 IPMHPDSRSLNLSNAAAIIGYEAWRQL 148


>gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
 gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
          Length = 156

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E      
Sbjct: 61  GDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPGEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR A        I            L +S    L+H+   R 
Sbjct: 1   MLRLALFQPDIPQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVTITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            + +         G + +  ++    P           L++G E  G+       A +  
Sbjct: 61  CSFSAFEAWRREAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHAAADARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+ AAA+ L      
Sbjct: 121 VIPLRAGLRSLNVAVAAAMILGEAMRQ 147


>gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 305

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A        + +L  ++  + +        +      + V    + K+    
Sbjct: 65  LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSKLAA-S 123

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 124 AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 183

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   AL ++   GF       D  + +   
Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 244 ALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299


>gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5]
          Length = 179

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 14/154 (9%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +   +        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPLPQKRKRGPEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D         + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETLP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           L    L+A+++S LL+VLD V DPHN+GAI+RSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSA 168


>gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
           9905]
          Length = 160

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYSAFLEAENPQRLFALTTKGTPTHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073]
 gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110]
 gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89]
 gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536]
 gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC
           O1]
 gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           SMS-3-5]
 gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6
           str. E2348/69]
 gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88]
 gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a]
 gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39]
 gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli
           UMN026]
 gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952]
 gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354]
 gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736]
 gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli
           CFT073]
 gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110]
 gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89]
 gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli
           536]
 gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1]
 gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           SMS-3-5]
 gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88]
 gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39]
 gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a]
 gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026]
 gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli
           LF82]
 gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952]
 gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1]
 gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354]
 gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           IHE3034]
 gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
 gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
 gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W]
 gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
 gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           110-3]
 gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           153-1]
 gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           16-3]
 gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
 gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           WV_060327]
 gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
 gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11]
 gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252]
 gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263]
 gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           57-2]
 gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           60-1]
 gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
 gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 301]
 gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 2457T]
 gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046]
 gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227]
 gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str.
           8401]
 gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC
           3083-94]
 gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T]
 gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC
           3083-94]
 gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
           2002017]
 gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
           2457T]
 gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           85-1]
 gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
           74-1112]
 gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
           796-83]
 gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
 gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
 gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
 gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
 gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
 gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
 gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
 gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
 gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
 gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 178

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 2/147 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        +   L ++     +        NL
Sbjct: 12  IIFDQPCIPPNTGNAIRLCANTGATLHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKNL 71

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            +    +     +    SS                L+ G E  GL          T +  
Sbjct: 72  QNCFDTLPEHQHRVFAFSSHGTTTHTDITYRFGDVLLFGTEPTGLDESALHHPRITEIVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M   I+++N++NAA+VA+Y      
Sbjct: 132 IPMRPGIRSMNLANAASVAIYEVWRQL 158


>gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10]
 gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10]
          Length = 194

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 5/165 (3%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P    +    L +VL     P N G I+R      C   +        +   L ++ 
Sbjct: 21  FWYPAPLIIGGHMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAG 80

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEG 237
               E        +    L        Q   L    +                L+ G E 
Sbjct: 81  LDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPET 140

Query: 238 KGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +GL     +   A     + M    +++N+SNA +V +Y      
Sbjct: 141 RGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 185


>gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
          Length = 292

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 17/263 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87
           Y  + +   ++R       +       V  AL       +  L     + +         
Sbjct: 20  YAHLTNNQLRNRLDPAHSVMICESPFVVEVALQTGQVP-YSFLTDTAHILQASEILERCG 78

Query: 88  -------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                   +  P+  +PPQ ++++VG +     L     P  +   + +  ++ + VL++
Sbjct: 79  WHRCTQDQNVIPLLVMPPQELERLVGYKITRGLLTAMERPQGASITETLGKARTVAVLEN 138

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GA+ R+A A   D ++     +   +    + + G +  +P+  +        
Sbjct: 139 LVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVFQVPWAHVPEELWVEG 198

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKN-------DKIALILGAEGKGLRPKTQETATSMAH 253
            MH    +    ++ +       + +        K AL  G+EG GL  +T E     A 
Sbjct: 199 LMHMLHEEGFITTALALTDTAVPLTDIKRTSSLGKHALFFGSEGYGLDQRTIEACDQTAI 258

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + M   + +LNV+ ++AVA +  
Sbjct: 259 IPMSHAVDSLNVAASSAVAFWEL 281


>gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 171

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +   D     +L + L   + P N G ILR A        +            L ++
Sbjct: 1   MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN++ + A+          +K
Sbjct: 121 VSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164


>gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
 gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++             
Sbjct: 4   MLKIVLYQPEIPPNTGNIMRLCANTGCSLHLIEPLGFDLDEKKLRRAGLDY--REFAEVS 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                          + +G+++    P  Q       AL+ G E +GL            
Sbjct: 62  VYPELNTFTAKHPQCRLMGVTTKGSTPHHQAAYTSGDALLFGPETRGLPASVLSKLPPQQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNAAAV  Y      
Sbjct: 122 RIRIPMLKNSRSLNLSNAAAVITYEALRQL 151


>gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 306

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 105/310 (33%), Gaps = 49/310 (15%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           IFS       +  R   D++ + + ++KS      + +   G   V   L +P      +
Sbjct: 3   IFSPIRIDDPRDSRLD-DFRNLNASDKKS----GEQLIIAEGTLVVPRLLASPY-PTRAV 56

Query: 72  LATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEA----------------- 109
           +     L  ++ + +         F V  V  + + ++ G +                  
Sbjct: 57  VGFPGKLRAIEAELSRSLSSDDANFSVFEVSREVLKEVAGFDMHRGLVASADRLPVNPVS 116

Query: 110 ------------VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                            A     +L    +A   S ++ VL+ V D  NIG+I R+A   
Sbjct: 117 PVGSVSTASTGDPAGTGASAVEAVLDHLEEAADTSGVIAVLEGVGDHENIGSIFRNAAGL 176

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++     +        + + G +  +P+ R    T   Q+      +         
Sbjct: 177 NVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVALT 236

Query: 218 KPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              +           ++  K+A+++GAEG GL       A   A + M     +LNV+ A
Sbjct: 237 PAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVATA 296

Query: 269 AAVALYITQN 278
           AA+A Y    
Sbjct: 297 AAIAFYEAVR 306


>gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
 gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K+ L+LG E +G+ P+      +   +   GII++LNV  + A+ALY     
Sbjct: 92  YRWPAKVVLVLGREKEGIPPEVLSLLDATLEIPQRGIIRSLNVHVSGAIALYEYVRQ 148


>gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 76/320 (23%), Gaps = 58/320 (18%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--------RKIFQ 70
            Y +     +   K+ +  +  +   +   + L G   ++ AL + +        R  + 
Sbjct: 88  RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGAVLQTLFFSRVDYL 147

Query: 71  LLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL------------ 116
            L   + L + +          +    V PQ +  I  K    +                
Sbjct: 148 KLFPPDKLRKANLIKVNFDNIKIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLPLSL 207

Query: 117 -------------------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                                                   L A   +   + +    D  
Sbjct: 208 ICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSLDWD 267

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
            +   L +                 +       S  G +   P   +             
Sbjct: 268 IVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSSDEE 327

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHMPGII 260
                      +     E       A+++G E  GL  +     E +     ++ +   I
Sbjct: 328 DNADKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDI 387

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN + AA++ L+  +   
Sbjct: 388 DSLNSAMAASILLFEGKRQI 407


>gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
 gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
          Length = 156

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E   A  
Sbjct: 61  RDWDAFVAAESPDPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSMNLSNTVAVVVFEAWRQ 149


>gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
 gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
          Length = 158

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 2/148 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+         +       ++  +L ++     +H+  +   
Sbjct: 4   LHVVLYQPEIPANTGNIARTCAGTGTTLHLIRPLGFSTDDKMLKRAGLDYWKHVNIVYYD 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETA-TSM 251
           +L +  +K        I    +           +  +  + G E  GL     E      
Sbjct: 64  SLEEFFEKNADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPNDLIEKNKDRC 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 124 LRIPMTDKVRSLNLSNTAAILVYEALRQ 151


>gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G + R+     C   +  K    ++   L ++       +      
Sbjct: 1   MHIVLFEPEIPANTGNVARTCAVTGCTLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           +L +  +      F  +       +   +        L+ G E KGL     E  A  + 
Sbjct: 61  SLEELWELYPEGVFHYVETEG--GRWYTEVAYGPNDFLVFGKETKGLPKDVIEAHADHVV 118

Query: 253 HLHM--PGIIKALNVSNAAAVALYITQNH 279
            + M      ++LN+SNA AV ++     
Sbjct: 119 RIPMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 235

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 4/229 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEA 109
             G   +  A      +I  +L  +N LA L      LP   PV       +D IVG   
Sbjct: 2   AEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFPI 61

Query: 110 VHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               LAL   P  S    L  + +  L++ L  + +  NIG I R+A AF    +I    
Sbjct: 62  HRGILALGRRPERSAAGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAA 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                     + + GA   +P+ R+    D +  +   G + + LS   +  L       
Sbjct: 122 CCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPPA 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++A + GAEG GL        T    + M G   +LNV+  + + L+  
Sbjct: 182 RVAALFGAEGPGLPDDVLAR-TRTVRIPMAGGFDSLNVATTSGIVLHHL 229


>gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
 gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
          Length = 179

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 2/160 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            + + D +++    ++ D    P N G  +R          +        +   L ++  
Sbjct: 13  PTNSTDWIKSHTCHVLFDRPVIPPNTGNAIRMCAGSGAMLHLAKPLGFNFDDKNLRRAGL 72

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +        ++  AL+   S G +    ++ +          +   L+ G E  GL 
Sbjct: 73  DYHDLADVRIHDSIDQALETFASQGCRIFAFTAHADTWHTDIEYTNTDVLLFGPEPTGLE 132

Query: 242 PKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +    T +  + M    +++N+SNAAAVA Y     
Sbjct: 133 QSVLDDPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQ 172


>gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 161

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K     +      +                L+ G E +GL     E    +   +
Sbjct: 63  EELYEKYPDRRYFYATTKAKHTHSE--VNYEIGDMLVFGPESRGLPESLLEGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 283

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 9/238 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + + +++         +   GV  V   L +P   +  +L  +  +  L        
Sbjct: 41  FRDLSTADRRPDRPGGRGLVIAEGVVVVERLLASPY-PVRAVLGVRRRVEALGELPA--- 96

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P        + ++VG   +++G+         P+LD +   + L VL+ V D  N+GA
Sbjct: 97  --PAYVASADVMARVVGFH-LNRGVLAAADRAPQPSLDELATGRRLAVLEGVGDHENLGA 153

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A A   DG++     S        + + G +  +P+  + +    L+ +   GF  
Sbjct: 154 LFRNAAALGIDGVVLGPGCSDPLYRRSVRVSMGHVLRVPFAAVDDWPGGLKLLQDKGFVV 213

Query: 210 IGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             L+         +   +  ++A++LG+EG GL  +    A     + M   + +LNV
Sbjct: 214 AALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271


>gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
 gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR     + +  I      P       ++    L+ +  +R    
Sbjct: 9   IALFQPDIPQNTGTILRLCACLNVEAHIIEPAGFPVSDRHFRRAGMDYLDQVTIMRHDCW 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +   Q   + G + + L++    P      + +  L+LG E  G+       A +   + 
Sbjct: 69  SKFEQWRAAAGCRLVLLTTKGLTPYLDYRYSARDVLLLGRESAGVPDDVAAVADARLVIP 128

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LNV+ AAA+ L      
Sbjct: 129 VQPGLRSLNVAMAAAMVLGEALRQ 152


>gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 160

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + I      L+LG E  G+ P+  E A     + M   +++LN++  AA+ L     
Sbjct: 86  FHAETIFQPNDVLLLGRESAGVPPEVHERADLRIRVPMVPGVRSLNIAVTAALVLGEALR 145

Query: 279 H 279
            
Sbjct: 146 Q 146


>gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 242

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 88/253 (34%), Gaps = 24/253 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K + +   + +   +       G   V+  L+       ++L   + + ++ +  +    
Sbjct: 8   KLIHTLETR-KGREKAGLFVAEGPKIVNDLLHEG-FVAEEILDNLDDIRKVSFLKHPQPV 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +P                   ET P  S       +++L++ LD V DP N+G I
Sbjct: 66  LGVFRLPAAD---------------RETPPAYSDIFRQYLDNRLVLALDGVQDPGNLGTI 110

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  F  + I  ++  +   +  + ++  G++  +    ++                +
Sbjct: 111 IRIADWFGIENIFCSQETADCWNPKVVQATMGSIARVKLHYLNLN---RLTEGLPADYPV 167

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVS 266
             +      L +   + +  +++G EG G+ P  +        +          ++LNV+
Sbjct: 168 YATLLDGDSLYEYPLSKQGMIVMGNEGNGITPMLRSKINRKLLIPNYPPGRKTAESLNVA 227

Query: 267 NAAAVALYITQNH 279
            A ++     +  
Sbjct: 228 IATSIVCAEFRRR 240


>gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 178

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA 
Sbjct: 16  EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + +    N  DA+Q++H  GF       +   +     +   + K A+++G E KG++
Sbjct: 76  NSVEWRYKKNTLDAVQELHDQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + ++   N   K
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       +E  +L ++     EH+  +   +L
Sbjct: 8   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTEDKMLRRAGLDYWEHVTIVYYDSL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETA-TSMAH 253
            +  +K     F  +    +           DK    I G E  GL     E        
Sbjct: 68  DEFFEKNAGGEFFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTGLPKDVIENNKDRALR 127

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M   +++LN+SN AA+ +Y       
Sbjct: 128 IPMNENVRSLNLSNTAAILVYEALRQQN 155


>gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
 gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
          Length = 158

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR       +  I      P       ++    L+ +   R  + 
Sbjct: 3   IALYQPDIPQNTGTILRLCACLEVEAHIIEPAGFPVSDRHFRRAGMDYLDRVSISRHVSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   + G + +  ++ +          D   L+ G E  G+  +  E+A     + 
Sbjct: 63  NAFRVWREADGGRLVLFTTKAATSYLAHRYEDTDILLFGRESAGVPDEVAESADQRLLIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LN++ +AA+AL      
Sbjct: 123 IAEGMRSLNIAVSAAMALGEALRQ 146


>gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 157

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHNYAAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++ A L ++       +    
Sbjct: 1   MALHIVLVEPEIPANTGNIARTCAATGIHLHLVRPLGFRTDDATLKRAGLDYWYAVHIEY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +  +K     F      +  +         D    + G E KGL P+  E    +
Sbjct: 61  HDSFQEVEEKYAGSRFFFATTKAKKRYTD--FKFQDGDFFVFGKETKGLPPEILEAHPDT 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+AA+ +Y      
Sbjct: 119 TMRMPMTDKVRSLNLSNSAAIIVYEALRQL 148


>gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 170

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 5/158 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L +VL     P N G I+R      C   +            L ++     E   
Sbjct: 1   MRKNLLNIVLFEPEIPANTGNIIRLCANSGCQLHLIKPLGFDLSDKRLRRAGLDYHEFTA 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                +    L     +      L    +                L+ G E +GL  +  
Sbjct: 61  VKHHDDYQAFLNNEGFYNTCVASLFALTTKGYSAHSDVNYQKNDYLLFGPETRGLPSRLL 120

Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++  A     + M    +++N+SNA ++ +Y       
Sbjct: 121 DSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQLN 158


>gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 158

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE+    R
Sbjct: 1   MTLHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLEYASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    +  M  +  + + LS+ ++    Q    +   L+ G E  G+     E     
Sbjct: 61  HIDWPHFIHTMKQFNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPNYVYEAVNET 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LKIPMQPYARSLNLAMSVAITTGEALRQI 149


>gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 154

 Score = 81.4 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L +  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YKDLNEFFEKNRGANVFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148


>gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 268

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 95/245 (38%), Gaps = 9/245 (3%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDAN-LPHPFPVKT 95
           +      +     + G   +  AL+  +R  +  LL  ++ +  L       P   P+ T
Sbjct: 22  KERDLVGRGGRFIVEGRTVLDVALSARNRFALESLLLAESRVHALTDLLAQAPDDLPIYT 81

Query: 96  VPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
                +D I G      +         P ++  + ++ +  L++V   + +  N+G I+R
Sbjct: 82  AAQPILDGITGFHIHRGLLGVGLRGEMPSMADLVASLPDEALVVVPLGITNHDNVGGIMR 141

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D  +              + + G    +P+ R  +    L  + + GF+ + L
Sbjct: 142 NAAAFGADAALFDFASCDPLYRKAIRVSVGGSLVVPFAREGSAEAILDLLAAHGFELLAL 201

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S   +  L    +  + AL+LGAEG GL       A     + M     +LNV+  + +A
Sbjct: 202 SPAGEATLGGIERPKRAALLLGAEGPGLPDHVLARA-RTVRIPMKAGFDSLNVATTSGIA 260

Query: 273 LYITQ 277
           L+   
Sbjct: 261 LHALA 265


>gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9]
 gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9]
 gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9]
          Length = 157

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS]
 gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC
           8739]
 gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str.
           REL606]
 gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088]
 gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
 gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS]
 gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC
           8739]
 gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606]
 gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088]
 gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           EC4100B]
 gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482]
 gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007]
 gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
          Length = 157

 Score = 81.0 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 157

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFLGSEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
          Length = 160

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae
           Sd197]
 gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185]
 gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
 gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185]
 gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
          Length = 157

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
          Length = 160

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 176

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS VA +    +            + ++A    E + Y   S++
Sbjct: 3   IVLLEPEIPANTGNIARSCVATNTRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYSDI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D  +K  +        ++ +    ++   N    ++ G E  G+  +   E       +
Sbjct: 63  NDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDYIMFGKESAGIPEEILSENEDGCIRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ A+ LY     
Sbjct: 123 PMWGDIRSLNLSNSVAIILYEALAQ 147


>gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818]
          Length = 717

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L  V++ ++D  NI AI R+  AF      T +R+           + GA + +   R  
Sbjct: 32  LACVIEGLHDTGNISAIQRTCDAFGVHDFHTIRRFPMDRMKQHRHVSKGADKWLRVHRWG 91

Query: 194 NLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  D +  +   G++            +  S   L     +   A + G E  G+  +  
Sbjct: 92  STGDCMAHLRQHGYRIAVTAVADDSSSNHASVTDLHALELDQPTAFVFGNEVAGISTQAL 151

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E A  +  + + G + ALNVS AA   L+       +
Sbjct: 152 EEADVLVQIPLVGFVSALNVSVAAGCVLHHATLQRRR 188


>gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
 gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 269

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 90/266 (33%), Gaps = 23/266 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+    ++I                DY+ +     ++R           G   +  AL  
Sbjct: 6   ITDPDDDRI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRALRA 50

Query: 64  PSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                  L+  K    R+D  A+L     PV    P  + +  G       LA      L
Sbjct: 51  GYPARSYLVDAK----RVDQLADLDTGDAPVYAATPDVLQRATGFHVHRGVLASFHRKPL 106

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               + +  ++ +++L+ VN+  N+GAI R A A   D ++ +   +        + + G
Sbjct: 107 RSADEVLAAARRVVILEDVNNHTNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMG 166

Query: 183 ---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
              A+ +          D ++                        + ++ AL+LGAEG G
Sbjct: 167 EVFAVPYAKLDSWPGGLDQVRAAGFTVLAMTPAPDAVPMQRLTPAQRERAALLLGAEGPG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNV 265
           L    Q  +     + M   + +LNV
Sbjct: 227 LTAAAQAASDVRVVIPMRRGVDSLNV 252


>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
          Length = 209

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 23/199 (11%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA------------VRNSQLLMVLDHVNDPHNIG 148
           + K+ G ++V    A+    + +   D                 + ++VLD + DP N+G
Sbjct: 1   MKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKRILVLDGIQDPGNLG 60

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++RSA AF  DG+          +    ++A GA   +P +  +               
Sbjct: 61  TLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTWHDLHALVTKYRMKM 120

Query: 209 TIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             G    S    ++             N+ + L+LG+EG GL  +T +    + ++ M G
Sbjct: 121 MAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAETLQAC-ELVNIPMEG 179

Query: 259 IIKALNVSNAAAVALYITQ 277
             ++LNVS A  + L++ Q
Sbjct: 180 TFESLNVSVAGGIFLFMLQ 198


>gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 178

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               ++++L ++    N+G++ RSA A   + II +   +      + K+A GA   +P+
Sbjct: 22  PKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGADASMPW 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQET 247
               N    L+ +   G +  GL       L  E+K  +  + L++G E +G+       
Sbjct: 82  EYTDNPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLVGNEVQGIEDNLLAQ 141

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   GI  +LNVS AA V L+    
Sbjct: 142 CDLVLEIPQFGIKHSLNVSVAAGVVLFELVR 172


>gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
 gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
          Length = 209

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R       D  +       ++   L ++       +      
Sbjct: 46  MHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHD 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           + +D  ++     F      +         +       + G E +GL     E       
Sbjct: 106 SFSDVRKQYKGHPFYFCTTKA--AHIYSDIVYTSDAFFVFGKETEGLPESLLEDNEEHTV 163

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA AV  Y     
Sbjct: 164 RIPMQAGARSLNLSNAVAVVAYEALRQ 190


>gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma]
          Length = 119

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 60/111 (54%)

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q 
Sbjct: 1   MSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQI 60

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y
Sbjct: 61  PKNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIY 111


>gi|163850108|ref|YP_001638151.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254559252|ref|YP_003066347.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|163661713|gb|ABY29080.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254266530|emb|CAX22294.1| putative rRNA methylase [Methylobacterium extorquens DM4]
          Length = 149

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR +        I            L +S    L+H+   R 
Sbjct: 1   MLRLALYQPDIPQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +           G + +  ++    P  Q    D   L++G E  G+       A +  
Sbjct: 61  RSWDAFEAWRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+  AA+ L      
Sbjct: 121 VVPIRPGLRSLNVAVCAAMMLGEAIRQ 147


>gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
 gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YRDLNDFFEKNRGANIFYYSTKG--KQYYTQAPYEDNCYLMFGKETAGLPRWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148


>gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
 gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
          Length = 156

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P +   + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    + K      +    ++                 + GAE +GL     E      
Sbjct: 61  ADWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPGAVLERFPDEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a]
          Length = 168

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L +VL     P N G I R+         I        +   L  +      ++    
Sbjct: 1   MELNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
              L D  ++     F        +          DK  ++ G E KGL  +        
Sbjct: 61  YDGLDDFFERNKDGEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN+ A+  Y     
Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147


>gi|240137241|ref|YP_002961710.1| putative rRNA methylase [Methylobacterium extorquens AM1]
 gi|240007207|gb|ACS38433.1| putative rRNA methylase [Methylobacterium extorquens AM1]
          Length = 149

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR A        I            L +S    L+H+   R 
Sbjct: 1   MLRLALYQPDIPQNTGTMLRMAACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +           G + +  ++    P  Q    D   L++G E  G+       A +  
Sbjct: 61  RSWEAFEAWRRETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+  AA+ L      
Sbjct: 121 VVPIRPGLRSLNVAVCAAMMLGEAIRQ 147


>gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 10/236 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A        + +L  ++  + +        +      + V    + K+    
Sbjct: 65  LYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVEEADLSKLAA-S 123

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 124 AHHEGVVAEVLRVTPHPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 183

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   AL ++   GF       D  + +   
Sbjct: 184 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQDVFAA 243

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
               ++  ++GAE  G+             +   G +++LNV++A AV  A +  +
Sbjct: 244 ALPQRLVYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 299


>gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
          Length = 157

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 271

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            R++   K+++   Q +    +      +++ G H   AAL    R    +LA    L  
Sbjct: 11  SRDNPLLKELRRLAQDNTAYRKSGTAGRVWVEGDHLARAALLRGWRPALAVLAESAWLHW 70

Query: 81  LDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                +  H       + P  +   +                  P    V++    +VLD
Sbjct: 71  GGEFGDASHTGAERTVLLPDALFASISALESFSPAQGLGLVFDLPVEATVQSGLSTVVLD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+G+ILRSA AF C  ++  K  +   S  + ++  GA              A 
Sbjct: 131 RVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGAHF----GLRLVEGLAA 186

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +  SS   + L +       A +LG EG+G+       A     +  PG 
Sbjct: 187 DDLAVLQVPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEALMARAALKLRIAQPGG 246

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LNV+ AAA+ L+ + 
Sbjct: 247 EESLNVAAAAAICLHASA 264


>gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MSINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YKDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEALRQL 148


>gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 156

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     PHN G I+R+         +        +   L +      +      
Sbjct: 1   MAINIVLVEPEIPHNTGNIIRTCANTGAILHLVRPLGFSLDDKHLKRCGLDYWDIADIQY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +   K     F    ++             D   L+ G E KGL     E    +
Sbjct: 61  YDSFEELEDKHKGAKFFFSTINGQKNHTD--VKYEDGCFLVFGKETKGLPKDLIEANMDT 118

Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280
              + M G    + LN+SNA A+ +Y      
Sbjct: 119 CIRIPMRGIEGARCLNLSNAVAIVVYEAMRQL 150


>gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 254

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT-VPPQTIDKIVGKEAV 110
           G+  V A     +    +L        +L      L     V   V P  + KI G   +
Sbjct: 10  GLPAVKARFQRDAASFRRLYFDYETGRKLGIICKALALAKKVYRCVEPAELAKIAG--TL 67

Query: 111 HQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           H G  +                    +    L++LD + + HN+GAI R+A  F    II
Sbjct: 68  HHGGVVAVVDEPALRAPLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHII 127

Query: 164 TTKRYSPSESAVLAKSASG------ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
                S +     A   +        L  +P +               G  T G +    
Sbjct: 128 IPAHASAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELREAGYEVVGAATRGGALTLP 187

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                       AL+LG E  GL  +  +  T +  +   G I++LNVS AAA+ ++   
Sbjct: 188 ALTGGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALL 247

Query: 278 N 278
            
Sbjct: 248 K 248


>gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
 gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276
           P  +        L+ G E +GL    +E    +    + M    ++LN++NA ++  Y  
Sbjct: 85  PHTEPQYQAGDVLLFGPESRGLPEAVREAIPTSQRIRIPMKADARSLNLANAVSIVSYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRQL 148


>gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 158

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    + 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           +  T  L+       +   +++     + + +       + GAE +GL P+ ++      
Sbjct: 61  AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149


>gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3]
          Length = 168

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L +VL     P N G I R+         I        +   L  +      ++    
Sbjct: 1   MELNIVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
              L D  ++     F        +          DK  ++ G E KGL  +        
Sbjct: 61  YDGLDDFFERNKDSEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN+ A+  Y     
Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147


>gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
 gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
          Length = 168

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L +VL     P N G I R+         I        +   L  +      ++    
Sbjct: 1   MELNIVLIEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
              L D  ++     F        +          DK  ++ G E KGL  +        
Sbjct: 61  YDGLDDFFERNKDGEFFYFTTKGRNTYCD--AEYKDKTYIVFGREDKGLPEELLFHNKQH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN+ A+  Y     
Sbjct: 119 CVRIPMGSNMRSLNLSNSVAIGAYEVLRQ 147


>gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253]
          Length = 157

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 179

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L+A     + ++L ++    N+G++ R+A A   + II T   +      + K+A GA 
Sbjct: 18  ELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEIDKTALGAQ 77

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRP 242
           + + +   ++  DA+ ++ + G +  GL       L   I  +   I L++G E  G+  
Sbjct: 78  DVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEFPICLVVGNEVDGIDD 137

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +      S+  +   G+  +LNV+ AA VAL+    
Sbjct: 138 EVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173


>gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8]
          Length = 149

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +   L+ G E +GL  +          + MPG +++LN++ A  VA Y      
Sbjct: 88  YEARFREGDYLLFGPESRGLPEEVLARF-PTLKIPMPGPVRSLNLAVAVGVAAYEAYRQL 146

Query: 281 A 281
            
Sbjct: 147 T 147


>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
 gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
          Length = 221

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLD V   HNIGA+ R++ AF  + I      +      + K+A GA 
Sbjct: 59  EFKEVDKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 118

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +    +  DA+ ++H+ G+  + +   +   L  E    K  K A++LG E KG++
Sbjct: 119 YTVDWKYFKHTQDAVNELHNDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVKGVQ 178

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +       +   G   +LNVS  A + ++   +   K
Sbjct: 179 QEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWEFAHKLFK 219


>gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGFSLHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++   +   +        L+ G E +GL  +  +      
Sbjct: 59  RHASFEAYLEKCKPKKVYACTTKGSQFHHEARYEAGDCLVFGPETRGLPDEMIQALPNEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y +    
Sbjct: 119 RVRIPMQPNSRSMNLSNAVAVFVYESWRQL 148


>gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424]
 gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424]
          Length = 177

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +    LD  +  + +++LD + DP N+G I+R+A AF+ D II  K  +      + 
Sbjct: 16  VCRIEEKQLDITKYKK-VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVI 74

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  HI      ++   + +M  +      L +D        I    +A+I G EG
Sbjct: 75  RSTQGSNFHIDCFENIDIKQLVTEMKEFNIYATSLKADKYLEELDNI-TGHVAIIFGNEG 133

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            G+  +      ++  ++MPG  ++LNVS AA + ++  
Sbjct: 134 SGVTDEILGEVNNLLKINMPGRAESLNVSIAAGIVMHYI 172


>gi|261219673|ref|ZP_05933954.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261322562|ref|ZP_05961759.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|260924762|gb|EEX91330.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295252|gb|EEX98748.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
          Length = 171

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  D     +L + L   + P N G ILR A        +            L ++
Sbjct: 1   MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN++ + A+          +K
Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164


>gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    + +               + ++  +   +        L+ G E KGL    
Sbjct: 50  YWHLLDIRYHDSLEELWALYPEGVFHYVETEGGRWYTEVAYGPNDFLVFGKETKGLPKDV 109

Query: 245 QE-TATSMAHLHM--PGIIKALNVSNAAAVALYITQNH 279
            E  A  +  + M      ++LN+SNA AV ++     
Sbjct: 110 IEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC
           100599]
          Length = 156

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 1/150 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I RS  A      +       ++   L ++       +    
Sbjct: 1   MPLHIVLHEPLIPANTGNIARSCAATGAHLHLIHPLGFSTDDRYLKRAGLDYWHAVNVHH 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             +    ++           + +  +K        D   +ILG E  GL  +  E     
Sbjct: 61  HESFEHFVEAQGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPEELTEKYREQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G  +++N+SN AA+ L+      
Sbjct: 121 TIRIPMSGATRSVNLSNCAAIVLFEGLRQL 150


>gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 171

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +            + ++       +     
Sbjct: 1   MLNIVLVEPEIPQNCGNIARTCAATRSRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSM 251
            NL     +  +         +   +        D   L  G E  GL  +         
Sbjct: 61  RNLEHFFAENPNPDLWLATTKA--PQDYTGATFRDNCYLFFGKETAGLPEEFRLAHYDRC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SN+ A+  Y     
Sbjct: 119 IRIPMRADARSLNLSNSVAILAYEALRQ 146


>gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
 gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
          Length = 156

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL  +  E   A  
Sbjct: 61  RDWDAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSMNLSNTVAVVVFEAWRQ 149


>gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R      C   +        +   L ++     E    +  
Sbjct: 1   MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           +N    +++        +                +   L+ G E +GL  +  E     +
Sbjct: 61  ANWDAFIKQQAPERLWALSTKGTKFHHEVSI--GEGDYLVFGPETRGLPMEILEYITFDN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M    +++N+SNAA+V +Y      
Sbjct: 119 VLRIPMLPNSRSMNLSNAASVMVYEAWRQL 148


>gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 167

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 ++ G E  G+  +   +   +   + M G I++LN+ N+ AV LY     
Sbjct: 91  YEPDCYIMFGKESAGIPEEILVDHEDTCVRIPMMGQIRSLNLGNSVAVVLYEALRQ 146


>gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
 gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
          Length = 234

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     +VL+++  PHN  A+LR+   F    +   ++    +        +     + 
Sbjct: 35  QRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLTLH 94

Query: 189 YIRISNLTDALQKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                   +                          +P++    N+KIAL+ G E +G+  
Sbjct: 95  KYFQPEEPENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFGNEHEGISN 154

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + +  A  + H+ M G  ++ N+S AA++ L
Sbjct: 155 EVKNAADGLVHIPMRGFTESFNISVAASLFL 185


>gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
 gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     ++   + 
Sbjct: 1   MGLHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWKYANVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +  +      F  I                ++    + G E  GL     E    
Sbjct: 61  HDSLDELFEAHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSGLPKDLIERNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M   +++LN+SN AA+ +Y     
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
 gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
          Length = 182

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 2/144 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++   V+  HNIG I+RSA AF    +        +        A  A +H   ++   
Sbjct: 25  FIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFKHFDTLQQCV 84

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 +        I   +           +   A +LG EG+GL  +         ++
Sbjct: 85  QHLKDVEGCRVLGIEICEGALPVHEHPFTG-SSPTAFLLGNEGQGLSERQMALCDGFVYI 143

Query: 255 HMPG-IIKALNVSNAAAVALYITQ 277
              G    +LNV+ AA++ L+   
Sbjct: 144 PQHGPGTASLNVAVAASIVLHHFA 167


>gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
 gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
          Length = 166

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +   ++ G E  G+  +   E   +   + M   I++LN+SN+ A+ LY    
Sbjct: 88  YTDVQYEEDCYIMFGKESAGIPEEILMEHKDNCVRIPMINEIRSLNLSNSVAIVLYEALR 147

Query: 279 H 279
            
Sbjct: 148 Q 148


>gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
          Length = 165

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R+ VA      +           ++ ++     + +     
Sbjct: 1   MINIVLHEPEMPANTGNIGRTCVAAGARLHLIEPLGFHINEKMVKRAGLDYWDKLDVTVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            N  D L+K            +            D   ++ G E  G+      +   + 
Sbjct: 61  DNYEDFLEKNPGAKIYMATTKAPHTYCD--VRYEDDCYIMFGKESAGIPEDILVQHPDTA 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+SN+ A+ LY     
Sbjct: 119 IRIPMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13]
          Length = 172

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             QL +VL     P N G I R+         +         +          L++   +
Sbjct: 1   MHQLNIVLVEPQIPQNTGNIARTCAVTGARLHLIRP---MGFTVTDKHLKRAGLDYWDKL 57

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
            I+      +            ++  +K     +  +   LI G E +GL          
Sbjct: 58  DITYYDSFAEFSARNPGAYFFFTTKGRKIHSDAVYPNNAYLIFGREDQGLPEDLLFAHPE 117

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SN+ A+A+Y     
Sbjct: 118 ECVRIPMRNELRSLNLSNSVAIAVYEALRQ 147


>gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
          Length = 178

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA 
Sbjct: 16  EFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + +    N  DA+Q++H  GF       +   +     +   + K A+++G E KG++
Sbjct: 76  NSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + ++   N   K
Sbjct: 136 QEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFVNKLMK 176


>gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri]
 gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri]
          Length = 308

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P+         A++ G E  G+  + +  +     + M G  ++LN+S AAA+ +   
Sbjct: 151 YPMSHYDWTIPTAVVFGNEKTGVSEEARAMSDGGVFIPMYGFTESLNISVAAALVMSHA 209


>gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13]
          Length = 163

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +  + 
Sbjct: 1   MGLHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249
             +L +  +K     F  I              K DK    + G E  GL     +    
Sbjct: 61  YDSLDELFEKNKEAEFFYITKFGMKPHTSFDYSKLDKDYFFVFGRETTGLPKDLIQSNLD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M   +++LN+SN AA+ +Y     
Sbjct: 121 QCLRLPMTKNVRSLNLSNTAAILIYEALRQ 150


>gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 280

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 93/263 (35%), Gaps = 15/263 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I  L D   A        Y  M     + R  ++           V  AL+       
Sbjct: 12  ERIEDLADPRLA-------PYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTP-R 63

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             L                   PV T P   ++ + G       LA    P   P  D +
Sbjct: 64  SFLLGDRYRGSFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVL 123

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ +++ + V D  N+GA++RSAVA   D ++ T + +        + + G +  +P+
Sbjct: 124 AGARRVLIAEDVVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPW 183

Query: 190 IRISNLTDALQKMHSWGFQ-------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            R+                       T          +E     +++AL+LG EG G+RP
Sbjct: 184 ARLPGPVAESLPALRAAGFAVAALEVTERAVGLDSPEIEPLRTAERLALVLGQEGPGVRP 243

Query: 243 KTQETATSMAHLHMPGIIKALNV 265
           +T     +   + MP  + +LNV
Sbjct: 244 ETLAQTDADVVIPMPDGVDSLNV 266


>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
 gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
          Length = 419

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 76/324 (23%), Gaps = 61/324 (18%)

Query: 18  SHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPS--------R 66
           +H  +  R     K++       +  +   +   + L G   ++ AL++ +        R
Sbjct: 84  AHEFRYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGQRLLTDALDSGAVLQTLFFSR 143

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLAL-------- 116
             +      + L + +          +    V PQ +  I  K    +            
Sbjct: 144 VDYLKEFPPDKLRKTNLIKVNFENIKIWSDLVTPQGLMGIFAKPDHVKMTYPDTQTKHTL 203

Query: 117 -----------------------------------ETAPLLSPTLDAVRNSQLLMVLDHV 141
                                                       L A   +   + +   
Sbjct: 204 PLSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPIITS 263

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D   +   L +               +         S  G +   P             
Sbjct: 264 LDWDIVPNYLPAGTKVFLADNFRPDNQNKPAEVSEKASDYGWVATDPKRIFITEDGYESS 323

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK---TQETAT-SMAHLHM 256
                          +     E       A+++G E  GL  +     E +     ++ +
Sbjct: 324 SDEEDNTDKLYIPGLEVQSYFERWAQGPCAVVIGGETHGLSIESLLLAEKSNGKRLNIPV 383

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              I +LN + AA++ L+  +   
Sbjct: 384 VPGIDSLNSAMAASILLFEGKRQI 407


>gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 354

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 118/327 (36%), Gaps = 62/327 (18%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPS 65
              ++I + K + +   +R+    K     + ++          ++G + V  AA+    
Sbjct: 31  AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAGVP 84

Query: 66  RKIFQLLATKNALARLDWDANLP------------------------HPFPVKTVPPQTI 101
            K   + +T     +L                                    +    Q +
Sbjct: 85  FKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLTEGGVHQGIAAELCAYQYL 144

Query: 102 DKIVGK----------------------EAVHQGLALETAPLLSPTLDAVR--------N 131
           D +                          AVH+  +          L            +
Sbjct: 145 DVMELWDLAVARAEAAGRAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKPPTH 204

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P  +
Sbjct: 205 PPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQ 264

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250
            +NLT ALQ +   G   IGL       L      D  + ++ G+EG+G+    ++T   
Sbjct: 265 ATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQ 324

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + +   +++LN + A  +ALY   
Sbjct: 325 IVSIPIAPRMESLNAAVATGIALYQIA 351


>gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 354

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 118/327 (36%), Gaps = 62/327 (18%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPS 65
              ++I + K + +   +R+    K     + ++          ++G + V  AA+    
Sbjct: 31  AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAGVP 84

Query: 66  RKIFQLLATKNALARLDWDANLP------------------------HPFPVKTVPPQTI 101
            K   + +T     +L                                    +    Q +
Sbjct: 85  FKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLTEGGVHQGIAAELCAYQYL 144

Query: 102 DKIVGK----------------------EAVHQGLALETAPLLSPTLDAVR--------N 131
           D +                          AVH+  +          L            +
Sbjct: 145 DVMELWDLAVARAEAAGCAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKPPTH 204

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P  +
Sbjct: 205 PPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQ 264

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250
            +NLT ALQ +   G   IGL       L      D  + ++ G+EG+G+    ++T   
Sbjct: 265 ATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQ 324

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + +   +++LN + A  +ALY   
Sbjct: 325 IVSIPIAPRMESLNAAVATGIALYQIA 351


>gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909]
 gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909]
          Length = 165

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247
            +    L   +    Q   L    +                L+ G E +GL     +   
Sbjct: 61  HDYQAFLDCENLDSAQPARLFALTTKGTPAHSAVSYQADDYLLFGPETRGLPASVLDALP 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    +++N+SNA +V +Y      
Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153


>gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           S  T  L+ M     +   L++   + +          ++ GAE +GL P+ +ET     
Sbjct: 61  SGWTALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPELRETFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149


>gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
 gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
          Length = 231

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +++++DPHN  A++RS  A     +   +     + +      S     +   +  
Sbjct: 48  LTVAIENLHDPHNGAAVVRSVEAVGLTSLHVAEPIERFQFSPAVAIGSEKWIRVLRHQGF 107

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                + +   +        ++          +   A++ G E +GL  +  +   +   
Sbjct: 108 TACARILRGAGFRMYAACPDAEMSMDDIDV--SQPSAVVFGNEHEGLSRRAIDACDAKVA 165

Query: 254 LHMPGIIKALNVSNAAAVALYI-TQNHFA 281
           + M G  ++LN+S + AV+++       A
Sbjct: 166 IPMHGFTQSLNLSVSVAVSIFQLAARRRA 194


>gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 171

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  D     +L + L   + P N G ILR A        +            L ++
Sbjct: 1   MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN++ + A+          +K
Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 164


>gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 271

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 100/250 (40%), Gaps = 6/250 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
              +   +  +K     Q       G   +SA L++ +     LL     L  +      
Sbjct: 14  PRLESYHNIREKDLTRRQH-QFVAEGKVVLSALLHSKNFSTLSLLVVAARLLEIMPILKE 72

Query: 88  PHP-FPVKTVPPQTIDKIVGKEAVHQG---LALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             P   +  VP + +D I G             +  P L   L  +    L+ VL  +++
Sbjct: 73  TKPTCSIYCVPQKIMDDIAGFHVHRGMLGIGERKALPSLQEFLQDLPERALVPVLCGISN 132

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GAI R+A AF+  GII  K         + +S+ GA   IPY + +++   ++ + 
Sbjct: 133 NENMGAIFRNAAAFASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIESIIKTLS 192

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F    LS  + + L++       ALILG EG  L     + +  +  + M     +L
Sbjct: 193 DANFHLYALSPSAPRYLKEAKTMKHTALILGTEGDSLPTHVLQKS-EILRIPMAYGFDSL 251

Query: 264 NVSNAAAVAL 273
           N++ A+ +AL
Sbjct: 252 NIATASGLAL 261


>gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 253

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 76/251 (30%), Gaps = 12/251 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           ++S   +     +       GV  V          +   +AT+  LA     +       
Sbjct: 11  LRSLYTR-HGRRKSGYCVCEGVRAVGELFARRPELVRFTVATERGLAEYGPVSGAL---- 65

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             ++      +  G      G+    A    P  +       +  LD + DP N G + R
Sbjct: 66  -YSLSESRFAEFAGTVNSQ-GILAVAAIPAPPGEETPPEVPFIFALDGLGDPGNFGTVCR 123

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  +   D +  TK           +S  G    +      NL         +G+  + L
Sbjct: 124 TLRSTGLDELWYTKGSIDPYGDKAIRSGLGVQFALKLRCFENLETLRAAAARFGYDKVFL 183

Query: 213 SSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           +   +            +  +++G E  G+             + MPG  ++LN + AA 
Sbjct: 184 TDPHQGESCFTAPDLFQRSVVVIGGEANGVNDLAAAR---RVTIPMPGNYESLNAAQAAT 240

Query: 271 VALYITQNHFA 281
           V L+       
Sbjct: 241 VFLFEYVRRLT 251


>gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri]
          Length = 174

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                ++ ++L       N+GAI+R+ VA +    +        +   + +S++  ++  
Sbjct: 1   MKTTKKINIILFEPEIAQNVGAIMRTCVAINAKLHLIEPFGFIFDERFITRSSANYVDFA 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
            Y   ++    LQ   +         +          K++KI ++ G E  G+      E
Sbjct: 61  DYETYNDWNHFLQLNPNLKLYCATRYAQQPHSAIDFTKDEKIFILFGRESTGIPTAILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M   +++LNV+N   +  Y      
Sbjct: 121 HLARTFRIPMSEKVRSLNVANTVGIVGYEIMRQL 154


>gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
 gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFADAEKPQRLFALTTKGTPAHSAVSYRDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 166

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 9/162 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D    S L + L     P N G I R+  AF     +        +   L ++      H
Sbjct: 3   DPSELSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     S+L    + +                            L+ G E  GL  K ++
Sbjct: 63  VALSVHSDLDTFRECLPLNHRLIGCSRFGGIPLRSM-RFQTGDVLLFGREDTGLPTKIRQ 121

Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
               +  + MP        G +++LN+S A A+  +      
Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQL 163


>gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus
           Ueda107]
          Length = 154

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R A    C   +        +   + ++     E       
Sbjct: 1   MFHIVLFEPEIPPNTGNIIRLAANTGCQLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L +        +       +            L+ G E +GL    +E+  A  
Sbjct: 61  ASWEHFLVQEQPTRLFALSTKG--SQCHSDAQFAAGDYLLFGPESRGLPADIRESLPANQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M    +++N+SNA AV +Y      
Sbjct: 119 VLRIPMAANSRSMNLSNAVAVMVYEAWRQL 148


>gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
 gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
          Length = 165

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ VA      +           +L ++     + +     
Sbjct: 1   MLNIVLHEPEMPANTGNIGRTCVATGARLHLIGPLGFKINDKMLKRAGLDYWDKLDVTEY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  D L K            +            +   ++ G E  G+  +   +   + 
Sbjct: 61  DDYNDFLAKNPGAKVYMATTKAHKTYTE--VNYEEDCYIMFGKESAGIPEEILVDNEDTC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+SN+ A+ LY     
Sbjct: 119 IRIPMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 155

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + +   +        LI G E  GL    +         + M    ++LN++N+ ++ L
Sbjct: 80  HAHRSYTRVEYTKDSLLIFGKESAGLPEAFRMAHEDECIRIPMVPEARSLNLANSVSIVL 139

Query: 274 YITQNH 279
           Y     
Sbjct: 140 YEALRQ 145


>gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
 gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      +VL     P N G + R+  A      +        +   L ++       + 
Sbjct: 1   MERRPFHVVLVEPEIPPNTGNVARTCAATGTVLHLVRPLGFEVDDRHLRRAGLDYWHWVH 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                   D L++     F         K+   +        L+ G E +GL     E  
Sbjct: 61  VEYHDRFEDLLEEHPEGRFFYFSTKG--KRQYAEVRYRPGDFLVFGKETRGLPDALLERF 118

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   I++LN+SN+ A+AL+     
Sbjct: 119 PEQTLRIPMRPDIRSLNLSNSVALALFEALRQ 150


>gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf.
           saccharolyticum K10]
          Length = 180

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +     +        ++ G E +G+      +   +   + M G I++LN+SN+
Sbjct: 75  YMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVQHQETCVRIPMWGDIRSLNLSNS 134

Query: 269 AAVALYITQNH 279
            ++ LY     
Sbjct: 135 VSIILYEALRQ 145


>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 152

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 3/148 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A      +            L ++     +H+   R
Sbjct: 1   MPFHVVLVAPEIPANTGNIARTCAATDTPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             + +  +Q      F    +   +              L+ G+E +GL P   ET    
Sbjct: 61  YPSWSALVQAHPEARFWCFSVRGKALYTE--VTYQPGDWLVFGSESRGLDPLFLET-YPS 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G +++LN+SNA A+AL+     
Sbjct: 118 VRIPLRGPVRSLNLSNAVAIALFEALRQ 145


>gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 159

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN++ + A+          +K
Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152


>gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 199

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVN 142
             +      V    + K  G E  H G+          T+            ++ L+ V 
Sbjct: 2   AANRKAYHVVDDAELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAEADDCVLALEDVG 60

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +PHN+GA++RS   F   G++  +  +  ES    ++A G  EH+  I   ++ DA+++ 
Sbjct: 61  NPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQF 119

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+  +  SS +  PL +     K+ L+LG E  GL      +A     +   G +++
Sbjct: 120 RKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVES 179

Query: 263 LNVSNAAAVALYITQNH 279
           LNVS A  V L      
Sbjct: 180 LNVSVATGVLLAEWWRQ 196


>gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
 gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
          Length = 277

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 19/270 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARL 81
            R +   ++++S  Q+S    Q   L L G H +   L +  P   +  ++      A  
Sbjct: 4   SRRNPLVRRLRSLAQRS-GREQEGLLLLEGAHLLQEVLRSQSPQTGLEVIVTPAWLEAHP 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +  +          V  + +   +          +     L    +   ++  ++ LD V
Sbjct: 63  NALSAWEGSVRWHHVSDEVLQAALSTLHP---DGVACLLPLEALPEPPGHTSFVLALDRV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA-------------SGALEHIP 188
            DP N+G +LR+A+A   + ++      P    V+  S+                     
Sbjct: 120 QDPGNLGTLLRTALAADVELVLLASGADPLSPKVVRSSSGAVLTLAQERLGPEERQGVRA 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                   +     P  +       AL+LG EG GL P+     
Sbjct: 180 LAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTRPTALVLGNEGSGLHPELLACC 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +    L     +++LNV+ AA   L   + 
Sbjct: 240 SHGVTLPHSPRVESLNVAAAAVPLLLERRR 269


>gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
 gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDY--HEFTAIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++                L+ G E +GL  +      A  
Sbjct: 59  FHADYQAFIATESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148


>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
          Length = 164

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                                G      ++ +          D   ++ G E  GL  + 
Sbjct: 52  YWDEADVRYYNNINEFFEKFPGKTFYYSTTKAVNNYCDVQFEDDSFILFGKETAGLPEEL 111

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +       + M   I++LN+SN+ A+ LY       
Sbjct: 112 LRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEALRQQN 149


>gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208]
          Length = 131

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 60/131 (45%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+                
Sbjct: 1   GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFEWIANLEEEGVP 60

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+ 
Sbjct: 61  VIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVAV 120

Query: 268 AAAVALYITQN 278
           AA + LY  + 
Sbjct: 121 AAGILLYGLRK 131


>gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans
           2-40]
 gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40]
          Length = 177

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 4/156 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              R +   +VL     P N G I+R      C   +        +   L ++     E 
Sbjct: 18  QQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEW 77

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  +N    +++        +                +   L+ G E +GL  +  E
Sbjct: 78  QSVVTHANWDAFIKQQAPERLWALSTKGTKFHHEVSI--GEGDYLVFGPETRGLPMEILE 135

Query: 247 TA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ++  + M    +++N+SNAA+V +Y      
Sbjct: 136 YITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQL 171


>gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
          Length = 154

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDY--HEFAHVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++  K            AL+ G E +GL     +      
Sbjct: 59  RHASLDAYIESEKPSRIFACTTKGKAFHSDAQYKKGDALLFGPETRGLPDDVIDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +    
Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQL 148


>gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 180

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLDHV   +N+G++ RS+ AF    +      +      + K+A GA 
Sbjct: 20  EFKTVEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAE 79

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           + + ++      DA++ + + G++   +       + Q+ + DK    A+ILG E KG++
Sbjct: 80  DSVNWVYYERTQDAVEHLKAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGVQ 139

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +       +   G   +LNVS  A + ++    
Sbjct: 140 QEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b]
          Length = 149

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   + ++      H     +
Sbjct: 1   MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                          +    S+  K             L+ G E  GL  +      S  
Sbjct: 59  HYENWQTFLQSHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+ LY     
Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 158

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+    + 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCILHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           +  T  L+       +   +++     + + +       + GAE +GL P+ ++      
Sbjct: 61  AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 121 RLRLPMLPGQRSLNLSNAVAVTVYEAWRQ 149


>gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32]
 gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32]
          Length = 249

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 13/239 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV----KTV 96
           R  S+P+ + L G H +  AL         +     AL +L  +        +    +TV
Sbjct: 11  RLRSRPDVVVLEGFHAIKHALRFGGAVDAVVTTDTAALRKLAQELAPDVEDAITAHAQTV 70

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               I +++G+    +  AL   P    +  +   +   ++L++  +  NIGA++R A  
Sbjct: 71  SAAEIAQLLGRVHQTEVAALARRPAWPESARSADRASPAVLLENPRNLGNIGAVIRVAAG 130

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                + +T    P             +          L              I     +
Sbjct: 131 LGLSSVYSTGTVDPWHP---------TVIRGSAGLHYALPVRRLAGIHEAEGPIYSLDPA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              L + +      L  G+E  G+ P+ +  +  +  + M   + + N++ + A+A Y 
Sbjct: 182 GIDLREAVIPQDALLAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMAAYH 240


>gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 280

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 95/263 (36%), Gaps = 15/263 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I  L D   A        Y  M     + R  ++           V  AL+       
Sbjct: 12  ERIEDLADPRLA-------PYTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTP-R 63

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             L                   PV T P   ++ + G       LA    P   P  D +
Sbjct: 64  SFLLGDRYRESFADVLAAHPDVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVL 123

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ +++ + + D  N+GA++RSAVA   D ++ T + +        + + G +  +P+
Sbjct: 124 AGARRVLIAEDLVDHTNLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPW 183

Query: 190 IRISNLT-------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            R+            A     +    T          +E     +++AL+LG EG G+RP
Sbjct: 184 ARLPGPVAASLPALRAAGFAVAALEVTERAVGLDSARIEPLRTAERLALVLGQEGPGVRP 243

Query: 243 KTQETATSMAHLHMPGIIKALNV 265
           +T     +   + MP  + +LNV
Sbjct: 244 ETLAQTDADVVIPMPDGVDSLNV 266


>gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
 gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
          Length = 154

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A      +       ++   L ++            
Sbjct: 1   MAFHIVLVEPEIPANTGNIARTCAATGAHLHLVRPLGFQTDDRTLKRAGLDYWH--AVHV 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             + +    +  +   +    S+ + K   +    D    + G E KGL  +  +    +
Sbjct: 59  EYHDSFKELQDANPNGRFFYASTRATKVYTEFDFRDGDFFVFGKETKGLPQELIDANLDT 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G +++LN+SN+AA+ +Y     
Sbjct: 119 CMRMPMTGDVRSLNLSNSAAIIVYEALRQ 147


>gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis
           Bu]
          Length = 156

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G+E +GL     E      
Sbjct: 61  PDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFQPGDWFVFGSETRGLPAPLLERFANAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
 gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
          Length = 168

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  ++ ++     E+   +R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              T  L++      +   L++   +   +        L+ GAE +GL P+ +ET     
Sbjct: 61  PGWTAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPELRETFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMVSGQRSLNLSNAVAVTVFEAWRQ 149


>gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC
           BAA-895]
 gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
 gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
          Length = 190

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 2/160 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P     R  +L +VL     P N G I R+         +        +   L ++ 
Sbjct: 14  HQPPENSPKRAHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAG 73

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
               + +      NL D   K     +                 ++  + ++ G E  GL
Sbjct: 74  LDYWDKLDIYYYDNLEDFFAKNEGEFYFFT-TKGRKVHSDAAYPEDKPVYIVFGREDAGL 132

Query: 241 RPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +           + M   +++LN+SN+ A+A Y     
Sbjct: 133 PEELLYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 172


>gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
 gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
          Length = 162

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 7/151 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL +     N G+I R  V   C   +        +   L ++       +     
Sbjct: 1   MFNIVLVYPQIHTNTGSIGRMCVNAGCPLHLIKPLGFVIDDKHLRRAGLDYWASLDLKIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETA 248
            +  + +     +  +    ++ + K   +        LI G+EG GL  +     +E  
Sbjct: 61  ESWDEFMAANGKFKQRFFFATTKTNKLYYEAKFQPGDFLIFGSEGHGLPLEIMRTNRENC 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LN++ +  +  Y     
Sbjct: 121 ---ITIPMSGAGRSLNLATSVGIVTYEAIRQ 148


>gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
 gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
          Length = 158

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                        A  +      + I  S  + K   +    +   ++ G E  GL  + 
Sbjct: 56  YWSEVEIHYWDDLAALQHAYPEGRFIYTSKKAAKTHIEAAFKEGDFIVFGKETVGLPEEL 115

Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E    +   + + G +++LN+S +A + LY     
Sbjct: 116 IEANRENTVRIPIFGKVRSLNLSTSAGIVLYEALRQ 151


>gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
 gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
          Length = 156

 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             N+    +  +   +        +    +      +   I G E  GL    +E  A +
Sbjct: 61  HENIESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   I++LN+SN AA+ +Y       
Sbjct: 121 ALRIPMSDHIRSLNLSNTAALLIYEALRQQN 151


>gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7]
 gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7]
          Length = 169

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I+R+ VA +    I        +   + ++    ++ +     
Sbjct: 1   MNHIVLVHPAIPQNTGNIMRTCVATNTSLHIIKPMSFELDDKKMKRAGLDYVKDLNLYVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            N  +  QK           S       +      +  L  G E  G+  +   +     
Sbjct: 61  ENYEEFEQKNPGEYHFFTRYSHLCYTDQDFSDDKKEHYLFFGHEHDGIPKEILTKHLDRC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMSDKVRSLNLSNCAAICIYEVLRQ 148


>gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
 gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
          Length = 149

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   + ++      H     +
Sbjct: 1   MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                          +    S+  K             L+ G E  GL  +      S  
Sbjct: 59  HYENWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+ LY     
Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 156

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +      +        +          ++   I G E  GL    +E  A +
Sbjct: 61  HESIEAFFESTEGNYYLLTKFGKQTYSDFNFSNTEEEHYFIFGRETTGLPNWVKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 164

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                              + G +    ++   K            L+ G E  G+  + 
Sbjct: 50  YWDKLDVTVYCDYQDFLERNPGAKIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E       + M G I++LN+SN+ ++ LY     
Sbjct: 110 LLENQEQCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145


>gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 168

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    + +    K          +S+ + +            L+ G E +GL    
Sbjct: 50  YWYLVEIYYHDSFEALKEKYPLGTFYYVSTKAARHYCDVEYGPGDFLVFGKETRGLPESL 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + +   + M    ++LN++N+ A+ LY     
Sbjct: 110 LQANSGNCVRIPMVSDARSLNLANSVAIVLYEALRQ 145


>gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 159

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHPDYAAFLDAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 154

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFAWDDKRIKRAGLDY--HEFSHVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++   +   Q        L+ G E +GL  +  ++     
Sbjct: 59  RHASFEAYLEACKPKKIYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDELIQSLPNEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +    
Sbjct: 119 RVRIPMQANSRSMNLSNAVSVFVYESWRQL 148


>gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 156

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     + +    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTDTHLHLIKPLGFSTDDKMLKRAGLDYWKFVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +      F        +    +   ++D +  I G E  GL    +E  A +
Sbjct: 61  HESIESFFETTSGKYFLLTKFGKKTYSDFDFSDRDDDLYFIFGRETTGLPQWVKEKYADT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMNSNIRSLNLSNTAALLIYEALRQ 149


>gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 300

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 8/229 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ + A      + + ++  T+  + +        +      + V    + K+    
Sbjct: 61  LYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLAS-S 119

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 120 THHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 179

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 180 LPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFAT 239

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
               ++  ++GAE +G+  +          +H  G++++LNV++A AV 
Sbjct: 240 ALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288


>gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
 gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
          Length = 149

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   + ++      H     +
Sbjct: 1   MIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                          +    S+  K             L+ G E  GL  +      S  
Sbjct: 59  HYENWQTFLQSHSQRRLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+ LY     
Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta
           thermophila DSM 6578]
          Length = 154

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 3/148 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A      +        E   L ++       +    
Sbjct: 1   MSIHVVLHEPEIPQNTGNIARTCAATGAVLHLIEPLGFSLEDRYLRRAGLDYWPMVDLRL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
            S+    L++        +                D+  L+ G E  GL P+  E     
Sbjct: 61  HSSWDAFLEEERPSSLFLLSTRGTRSYHTCS--FPDETYLVFGKETAGLPPRILEAFPDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  + M    ++LN+SNA A+ +Y    
Sbjct: 119 VVRIPMRAGARSLNLSNAVAILVYEALR 146


>gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
 gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
          Length = 193

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 46/163 (28%), Gaps = 4/163 (2%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L   + S   + L       N G I+R      C   +        E   L ++
Sbjct: 28  CSRPQPLHFRQASMFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRA 87

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                +        N    L+ M               +P  +        L+ G E +G
Sbjct: 88  GLDYADLANVSHHKNFESFLKAMQGKRIMACTTKG--SRPHSELTFQQDDVLLFGPESRG 145

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L     ++        + M    ++LN+SNA A+  Y      
Sbjct: 146 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQL 188


>gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 174

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  + + L     P N G I+R          +        E   + ++      H   
Sbjct: 23  ENHMIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWA 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +               +    S+  K             L+ G E  GL  +      
Sbjct: 81  SILHYENWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-Y 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           S   + M    ++LN+SNA A+ LY     
Sbjct: 140 STIRIPMRENNRSLNLSNAVAIILYEAWRQ 169


>gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 154

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDVSDRSLKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++           G + + LS+ +  P       +   L+ G E  G+     + A + 
Sbjct: 61  HADWRHFEDWRRQAGRRIVLLSTRAAVPYTDYQFQENDILLFGRESSGVPDTVHDAADAR 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN++ + A+          
Sbjct: 121 LLIPMMPGARSLNLAISVAMTAGEALRQRK 150


>gi|33322913|gb|AAQ07193.1|AF496501_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 115

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +ALI+G E  G+ P+    A    ++ + G  ++LN + AA + +Y  
Sbjct: 67  VALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLNAAVAAGIMIYHF 114


>gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
 gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
          Length = 157

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDY--HEFTAIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++                L+ G E +GL  +      A  
Sbjct: 59  FHADYQAFIAAESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLPAEILAALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148


>gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
 gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
          Length = 176

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
               +   L++VLDHV   +N+G++ R++ AF  + I      +    A + K+A GA E
Sbjct: 17  FKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHKTALGAEE 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRP 242
            + +    +  +A+ K+   G+    +       +       KN K A+I+G E KG++ 
Sbjct: 77  TVDWEYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLDNLLLDKNKKYAVIMGNEVKGVQQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +       +   G   +LNVS    + ++      +
Sbjct: 137 CVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 175


>gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P]
 gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P]
          Length = 225

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL---E 185
            R     +VL+ +  PHN  A++R+   F    +   +    ++ +      S       
Sbjct: 28  NRTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENKYNTKVSRHVAKGSQKWLNQY 87

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  +                     ++   L+      K A + G E +G+     
Sbjct: 88  RYRSDGDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAFVFGVEAEGVSDCVI 147

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E A     + M G  ++LN+S AAA+ L   
Sbjct: 148 ENADGFLKIPMVGFTESLNISVAAAIILQEV 178


>gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 180

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLDHV   +N+G++ RS+ AF  + +      +      + K+A GA 
Sbjct: 20  EFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTALGAE 79

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           + + ++      DA++ + + G++   +       + Q+ + DK    A+ILG E KG++
Sbjct: 80  DSVDWVYYERTQDAVEHLKAEGYEVWAVEQVEGSVMLQDFRPDKAKKYAIILGNEVKGVQ 139

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +       +   G   +LNVS  A + ++    
Sbjct: 140 QEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
          Length = 159

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR          +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN++ + A+          +K
Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152


>gi|156095332|ref|XP_001613701.1| RNA methyltransferase [Plasmodium vivax SaI-1]
 gi|148802575|gb|EDL43974.1| RNA methyltransferase, putative [Plasmodium vivax]
          Length = 313

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 90/270 (33%), Gaps = 16/270 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIFQLLAT 74
           D+ Y ++ +  +  K +    +K     +  + F      V  +  + N +R        
Sbjct: 48  DNEYLRISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTIANLARNNNLTFEV 101

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKI---VGKEAVHQGLALETAPLLSPTLDAVRN 131
             + +R   D        +      T++ I     K              L   + A   
Sbjct: 102 ILSNSRSLLDHFKSKCSKLYYADSDTLNYIFRDSLKVNKGAKNDAVAVVKLPEPIPAKEP 161

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + L+  D +   +N+G IL +A +   D +          +  + +  +G+   I Y  
Sbjct: 162 IRFLLAFDRIRYAYNLGKILNTAYSLGVDCLFYLHNTVDPFNHKVIEMTNGSHLQISYQF 221

Query: 192 ISN----LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            S           K+      T G++      +  E +   + LILG E  G        
Sbjct: 222 GSYVELRQFCEAHKLLPIVAHTNGVNPGHILKVTSEQEKKGVCLILGNESTGPHADVLSF 281

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A     L M  +  +LNVS AA++ ++  +
Sbjct: 282 A-KPISLPMHEMTNSLNVSVAASILIHYLK 310


>gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella
           pneumophila str. Corby]
 gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           str. Corby]
          Length = 155

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  + + L     P N G I+R          +        E   + ++      H   
Sbjct: 4   ENHMIHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWA 61

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +   +           +    S+  K             L+ G E  GL  +      
Sbjct: 62  SILHYESWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-Y 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           S   + M    ++LN+SNA A+ LY     
Sbjct: 121 STIRIPMRENNRSLNLSNAVAIILYEAWRQ 150


>gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
 gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
          Length = 257

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 9/160 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G+I R+  A +    +        +   L ++      ++   
Sbjct: 73  RRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVK 132

Query: 191 RISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +                    +    +            L+ G+E KGL  +  E  
Sbjct: 133 IHDSWDHFFDYFMKQEGDKRLLAFTKRGTQIHSDFSYRPGDWLVFGSETKGLPQQALEDC 192

Query: 249 TS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                      + M    ++ LN+S +  +ALY       
Sbjct: 193 CREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLN 232


>gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 180

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 1/144 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V   +N+G+  R+A A S + +  +   +    + + K+A GA   + +      
Sbjct: 25  VLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGAENTVCWEHAWEA 84

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL 254
              ++K  + G++   + +        +      + +I G E  G+RP       +   +
Sbjct: 85  RPLVEKARAQGYEIAAVETSVHAVDLFDWTPRFPVLVIFGHEVDGIRPAISALCDTHVRI 144

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M G   +LNV+ A  V +Y    
Sbjct: 145 PMLGAKHSLNVATAGGVVIYELLR 168


>gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 156

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + +   ++           N  +AL++G E +GL  + +      
Sbjct: 61  DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEQVRLMFPQD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 178

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + ++L ++    N+G++ R+A A   D I+ T   +      + K+A GA   +P+
Sbjct: 24  ERHPVTLMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPW 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
              ++  +AL  +   G +  GL           ++ D   + L++G E  G+  +    
Sbjct: 84  RHFADPLEALSVLKGEGCKVFGLEIAENSRSYSSLQPDDYPLVLLVGNEVDGIGDELLAR 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   G   +LNVS AA VAL+    
Sbjct: 144 CDGVLEIPQYGTKHSLNVSVAAGVALFECVR 174


>gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218]
          Length = 157

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMA 252
              +  + + G   I   +                 L+ G E +GL     E+       
Sbjct: 64  QAFIAFLEARGDYRIFACTTKTTGHHVDAQFQRGDVLLFGPETRGLPADLIESLPMAQRI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+  +     
Sbjct: 124 RIPMMPEARSLNLSNAVAIIAFEAWRQ 150


>gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b]
          Length = 157

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIHPLGFGWDDKRLRRAGLDY--HEFTAIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++                L+ G E +GL            
Sbjct: 59  HHDNYAAFVAAEAPQRLFALTTKGTPAHSAVRYQAGDYLVFGPESRGLPADILNALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPESRSMNLSNAVSVVVYEAWRQL 148


>gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 152

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +     + P N+G+  R A  FS    I      P  +  L +SA      +   +  + 
Sbjct: 3   IAFYQPDIPQNLGSNFRIAACFSTKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T           + +  ++    PL +        L+ G E  G+  +  ++A     + 
Sbjct: 63  TSFKNSPDRKKGRLVLFTTKGATPLLETKFESGDTLLFGRESAGVPDEVHDSAQIRCVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    ++LNVS +AA+AL+     
Sbjct: 123 LNPEARSLNVSVSAAIALHEALRQ 146


>gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638]
 gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638]
          Length = 157

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            +   L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFVAAENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATILDVLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 162

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247
            +    L        Q   L    +                L+ G E +GL P   +   
Sbjct: 61  HDYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTVLDALP 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    +++N+SNA +V +Y      
Sbjct: 121 AQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 153


>gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 300

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 8/229 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ + A      + + ++  T+  + +        +      + V    + K+    
Sbjct: 61  LYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLAS-S 119

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   G++
Sbjct: 120 THHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLL 179

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +   
Sbjct: 180 LPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDVFAT 239

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
               ++  ++GAE +G+  +          +H  G++++LNV++A AV 
Sbjct: 240 ALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288


>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
 gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 108/315 (34%), Gaps = 71/315 (22%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           + K +        +T+      +YG+    AAL    R+I++L   ++    L  +    
Sbjct: 165 EVKSLVRPPSSVPYTTPASQF-VYGISACMAALRCSRRRIYKLYIYQSEGRELSPEKKAL 223

Query: 89  HP--------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------- 129
                       +       +   +     HQG  LE +PL    +              
Sbjct: 224 RKLALLKNVTVKMAFASWGRLLDQMSDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNF 283

Query: 130 ----------------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                                       +   ++++LD + DP N+GAI+RSA     D 
Sbjct: 284 GLELGAQSREEAQVNTTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADA 343

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI----------- 210
           I+   R S   S V+ K+++GA E +  + + N  D +++    G++             
Sbjct: 344 IVFAGRNSAEISPVVLKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTS 403

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------------ 258
                ++      +      +++G+EG GL P     A ++  +                
Sbjct: 404 TYIDPAEFGNGAPVAQAPSVIMMGSEGTGLSPHILSQADAVIGIPGAKFSPELGAESDPA 463

Query: 259 IIKALNVSNAAAVAL 273
            + +LNVS AAA+ +
Sbjct: 464 RVDSLNVSVAAALLM 478


>gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis Bt4]
 gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis E264]
          Length = 156

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +T   ++                 + G+E +GL P   E      
Sbjct: 61  RDWDAFVAAEAPDPARTFAFTTRGSGRFHDRAFEPGDWFVFGSETRGLTPALVERFAPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 255

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 17/245 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTIDKI 104
           + G   V       S+KI +L   +        L +    +  P+     +V  + +   
Sbjct: 11  VCGFAAVKTLEKINSQKIRRLYFMEEKAPLFGGLCKKMAASKRPYNKVADSVELEKLCGS 70

Query: 105 VGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           V  + V   +       L+  +    V   +  ++LD V + +N+GAI+RSA  F    I
Sbjct: 71  VHHQGVVAMIDTPVILPLNTEITARWVEQKEDAVILDRVGNANNLGAIVRSAAFFGIKNI 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKP 219
           +     S S     +   +        I        L K         G S         
Sbjct: 131 VIPLDESQSSITTSSYRVAEGGMEFVNIYSVRSIPFLLKDMKGKMARFGTSLKAQKKVSE 190

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVAL 273
           ++   +     ++LG E KG+  +  +   S+  +   G       + +LNV+ AA+V +
Sbjct: 191 MKLLCQEKPALVVLGNEEKGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAASVIM 250

Query: 274 YITQN 278
           Y  + 
Sbjct: 251 YELKK 255


>gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
 gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
          Length = 161

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K     +      +                L+ G E +GL     +    +   +
Sbjct: 63  QELYEKYPDRRYFYATTKAKHTHSE--VKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 154

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVKRAGLDY--HEFSHVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++   +   Q        L+ G E +GL     +      
Sbjct: 59  RHASFDAYLEKCQPKKVYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDDMIQALPNEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y +    
Sbjct: 119 RVRIPMQADSRSMNLSNAVAVFVYESWRQL 148


>gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
 gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
          Length = 354

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + ++ G+EG+G+    ++T   +  + +   +++LN + A  +ALY   
Sbjct: 302 PLVVVTGSEGRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQIA 351



 Score = 41.7 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
              ++I + K + +   +R+    K     + ++          ++G + VS A      
Sbjct: 31  AYRDRIAAEKKATHTNAQRSRAAAKDHYRPHTRA------GAELIFGRNPVSEAAVAG-V 83

Query: 67  KIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              +L       K+       +       P++      +D++  +  VHQG+A E     
Sbjct: 84  PFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAYQ 142

Query: 123 SPTLDAVRNSQL 134
              LD +    L
Sbjct: 143 Y--LDVMELWDL 152


>gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 154

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P+N G I R+         +        E   L ++     +++    
Sbjct: 1   MPINIVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             +L D  +K               K+   Q    D   L+ G E  GL     E     
Sbjct: 61  YRDLNDFFEKNRGANIFYFSTKG--KQYYTQAPYEDNCYLMFGKETAGLPKWLIEQNIHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN+SN+ A+ LY      
Sbjct: 119 TYRIPMISDVRSLNLSNSVAIVLYEVLRQL 148


>gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 153

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +        E  +L ++     E       ++ 
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGIRLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
            + + ++     +   +S+  K+  +    +   A + G E +GL     E         
Sbjct: 64  VECMDELGDRDRRFFAISTKGKQRYDLVTYSPGDAFLFGPESRGLPTDLLENFPEQHRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA AV +Y     
Sbjct: 124 VPMAAGSRSLNLSNAVAVIVYEAWRQ 149


>gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 169

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R+ +A +    +        +   L ++    ++ + Y   
Sbjct: 1   MLHLVLYEPEIPQNTGNMMRTCMATNTRLHLIKPLGFSLDEQHLKRAGMDYVKELDYTVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250
            N  D   +  S  +  +                      ILG E  G+  +        
Sbjct: 61  ENWEDFTSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIPKELLSRQLDR 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN AA+ LY      
Sbjct: 121 CMRLPMVANARSLNLSNCAAIILYEALRQL 150


>gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 156

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G +LR     S    +      P   + L ++    LE     R  N 
Sbjct: 4   IALYQPDIPQNTGTMLRLVACMSVTVHLIEPAGFPLSDSALKRAGMDYLERAALKRHLNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   +   + + L++ +              L+LG E  G      + A +   + 
Sbjct: 64  AAFDDWRRTHNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPDAIHQLADARLTIP 123

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ +  + L      
Sbjct: 124 MAEGMRSLNVAVSCGMVLGEALRQ 147


>gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
 gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
          Length = 238

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R +   +  + V   HN  A++RS   F    +   +  +  +        +     I 
Sbjct: 41  QRTNHFTVATEDVYQLHNTSAVIRSCDVFGVQNVHIIEEQNAKKIDREIAMGAQKWVTIN 100

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +    K   +              L         A+  G E  GL  +    A
Sbjct: 101 RYHSVQDSIKSLKEKGYQIVATSPH-IESHNLRDFDVTKPSAIFFGTEKDGLSEEVLNQA 159

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            S   + M G  ++LN+S +AA+ L    N   +
Sbjct: 160 DSYIKIPMVGFTESLNISVSAAIILQHITNELKQ 193


>gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
 gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
          Length = 161

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K  +  +      +                L+ G E +GL     +    +   +
Sbjct: 63  QELYEKYPNRRYFYATTKAKHTHSE--VKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 157

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    + +  +       ++  +L ++      ++    
Sbjct: 1   MGLHIVLYQPEIPANTGNIARTCAGTNTELHLIRPLGFSTDDRMLKRAGCDYWPNVNIHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQE-TAT 249
             ++ +         F  I                 K  L + G E  GL     E    
Sbjct: 61  YDSVDELFATFPDGEFYFIETVGSKNYADFDYSDGSKDHLFVFGRETTGLPNDLIEQHLD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     +++LN+SN AA+ +Y     
Sbjct: 121 RCFRIPQTDKVRSLNLSNTAAIVIYEAIRQ 150


>gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU121]
          Length = 156

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             ++    +  +   +        +    +    N+    I G E  GL    + +   +
Sbjct: 61  HEDIESFFESTNGEYYLLTKFGKQTYSDFDFSDTNNNHYFIFGRETTGLPDWVKDKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
 gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
          Length = 171

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     +    D      +   + + L++ +++  +     D   L+ G E  GL     
Sbjct: 50  YHELADVHVHADVDAARAACPGRWLALTARARRRYDAVDYRDDDVLVFGCEATGLPDYLL 109

Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            T  A     + M    ++LN+ NA AV  Y      
Sbjct: 110 ATFSADERLRIPMRPDNRSLNLGNAVAVVAYEAWRQL 146


>gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 228

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 63  NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+       
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P L  +        L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 221


>gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ]
          Length = 249

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 2/188 (1%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +  +  D    +  V   L  +   L+   LD  R S L ++L+ + D  N+ AI R+ 
Sbjct: 23  EINDKNFDHHTMRSIVEDSLNDQRKELIERILDQ-RISGLSVILESLGDLGNLQAISRTC 81

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    +   +   P +        +                                S
Sbjct: 82  DNFGVQKLEIIETKGPMKWTNRTSQGAHKWVT-MQKWYETKDCLQYFKDRGVQIVSTAFS 140

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D   P  +       AL++G E  G+    +E +     +   G  ++LNVS AAA+ + 
Sbjct: 141 DKAIPYTEVDFTKPTALLMGNESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVIE 200

Query: 275 ITQNHFAK 282
              +   K
Sbjct: 201 HATSQIRK 208


>gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 157

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFLESEKPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4]
 gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4]
          Length = 157

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    +    +       ++  +L ++       +    
Sbjct: 1   MGLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGCDYWPSVDIHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQET-AT 249
             +L +         F  I               ++K    + G E  G+     +    
Sbjct: 61  YDSLEELFDTYKEGEFYFIETVGTKNFSEFDYSDDNKDHFFVFGRETTGIPQDIIDRNLD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     +++LNVSN AA+ +Y     
Sbjct: 121 RCFRIPQTDKVRSLNVSNTAAIVIYEAIRQ 150


>gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis C6786]
          Length = 156

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +             ++                 + GAE +GL P+  E      
Sbjct: 61  RDWDAFIAAEAPDPAHMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 151

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 47/139 (33%)

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +P   G +       +C GI                 A  A++++    +    D   
Sbjct: 5   LYEPDIAGNVGTLIRTAACFGIAVDLIEPMGFPYSDRALARSAMDYVDRAEVVRHADWTA 64

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +   + +  ++    PL          ++LG+EG G+     + A     + M   +
Sbjct: 65  FQAAARGRIVLATTLGALPLPDMRFRPDDVILLGSEGAGVPSAVHDAADIRVRVPMRAGV 124

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+    + +   +  
Sbjct: 125 RSLNVAITGGILMAEARRQ 143


>gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 235

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +++ + ++ V   HN  A++RS   F        +R    +        S       +
Sbjct: 48  RTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAMGSQ-KWVDIH 106

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S          +          +    LE      KIAL  G E  GL  +  + A 
Sbjct: 107 RYESTKNCMDTLKQNGYKIIATTPHNDSCLLEDFEIEGKIALFFGTERNGLSEEVLKNAD 166

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + M G  ++LN+S +AA+ L
Sbjct: 167 GFLKIPMVGFTESLNISVSAAIIL 190


>gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
 gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
          Length = 154

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++      H      
Sbjct: 1   MFHIALFEPQIAPNTGNIIRLCANNGCQLHLIEPMGFNLEEKKLRRAGLDY--HEFANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
                   K      +    ++       +        L+ GAE  GL  +  E+     
Sbjct: 59  VYPDYWAFKEAMKDKRIFACTTKGSGHYHKVKYQPDDVLLFGAETHGLSDEVMESIDPSM 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+        
Sbjct: 119 RIRIPMLPDSRSLNLSNSVAIISLEAWRQ 147


>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
          Length = 156

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           P  Q    D   L+ G E +GL  +  ++  AT    L M    ++LN+SNA AV LY  
Sbjct: 85  PHSQACFQDGDVLLFGPETRGLPEQILDSLPATQRLRLPMVAESRSLNLSNAVAVTLYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRQL 148


>gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           KT2440]
          Length = 157

 Score = 79.9 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      ++L     P N G I+R      C   +        +   L ++     E+  
Sbjct: 1   MEPCMFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYAT 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
             R  +L   L+       +    ++    P  +       A + G E +GL  +  ++ 
Sbjct: 61  LKRHESLAGCLES--LGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSL 118

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     L M    ++LN+SN  AV +Y     
Sbjct: 119 PAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 151


>gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
 gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
          Length = 169

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 1/150 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I+R+ VA +    I        +   + ++    ++ +     
Sbjct: 1   MNHIVLVHPAIPQNTGNIMRTCVATNTVLHIIKPMSFDLDDKKMKRAGLDYVKDLDLRVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            N  + ++K           S       +    +    L  G E  G+  +   +   S 
Sbjct: 61  ENYEEFVRKNPGEYHFFTRYSHLCFTDQDFSDSSTDHYLFFGHEHDGIPKEILTKHLDSC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M   +++LN+SN AA+ +Y       
Sbjct: 121 LRIPMSDKVRSLNLSNCAAICIYEVLRQQN 150


>gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 275

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 14/249 (5%)

Query: 41  RHTS---QPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALARLDWDAN-LPHPF 91
           +      +       G   V   L    R+        +L  ++ +A +       P   
Sbjct: 23  KERDLTGRQGRFIAEGT-VVLRMLAAAHREGRGIAAEAILLLESRVAGVAELLAQFPPDV 81

Query: 92  PVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           PV     +  D I G      V      + AP     +  +  S L++    +++  N+G
Sbjct: 82  PVYVAASRVFDAIAGFNMHRGVLALGRRDAAPGRDALIAGLPQSSLVLAACGISNHDNMG 141

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A AF  D ++              + + G++  +P+ R     + ++++ + GF 
Sbjct: 142 SLFRNAAAFGVDAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAREGTAAELIERLQTAGFV 201

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GLS      +       + AL++G EG+GL           A +     + +LNV+ A
Sbjct: 202 VWGLSPRGTADINAIPPAPRTALLVGTEGEGLPETILSQI-RTARIRQRPGLDSLNVAMA 260

Query: 269 AAVALYITQ 277
           A +AL+   
Sbjct: 261 AGIALHQVA 269


>gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM
           22836]
          Length = 175

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
              +   + L++VLD+V   +NIG++ R++ AF  + +      +   +  + K+A GA 
Sbjct: 16  EFKSEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +   S+   A++++   G+    +       +  E       K A+ILG E KG++
Sbjct: 76  NSVAWAYYSDTDQAVEELKKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                       +   G   +LNVS AA + ++       
Sbjct: 136 QDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQLK 175


>gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 158

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G ILR +  F     I            L ++    LE     R
Sbjct: 1   MALHIALFQPDIAGNTGTILRLSACFGLHVHIIEPAGFDISDRNLKRAGMDYLERASLER 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  + +  M  +  + + LS+ +K    +        L+ G E  G+     + A   
Sbjct: 61  HLDWQNFIDTMQRFNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPDYVYKAADCT 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++ + A+         
Sbjct: 121 LTIPMLPHARSLNLAISVAMTTGEALRQI 149


>gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
          Length = 149

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   + ++      H     +
Sbjct: 1   MIHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDY--HQWASIL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              +           +    S+  K             L+ G E  GL  +      S  
Sbjct: 59  HYESWQTFLQSHSQRRLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTI 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+ LY     
Sbjct: 118 RIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 237

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNH 279
           +   AL+ G E  G+  +    A +   + M G +++ N+S AAA+ALY        
Sbjct: 140 SRPTALLFGNEHSGVSQEAIRAADATFMIPMYGFVQSFNISVAAALALYDVTERARQ 196


>gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
 gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
          Length = 221

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   +      + +LL  K    +   + N    F +  +  +T  + + +  
Sbjct: 2   IVYGKRVVEYIIQKHGNIVKELLIAKKLDKK---ELNKLKQFKINFIDNKT-AQKISRNG 57

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG   +         +       +++LD V D  NIGAI R+A A   D +I T    
Sbjct: 58  NHQGYFAKI---DFTPGEWEITGNKIVILDGVTDMGNIGAITRTAYALGVDLLIITGIKE 114

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                V+  SA  AL+             +  + +       + + +    E +I+ DK+
Sbjct: 115 LKWPQVIRTSAGAALD-----MKILTYHNILDLINILKTKGYIIAGADMGGECKIEADKL 169

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ALILG EG+GL+ K +E    +  + M     +LNVS AA + +
Sbjct: 170 ALILGNEGEGLKKKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213


>gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
          Length = 445

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 75/341 (21%), Gaps = 64/341 (18%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 99  KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156

Query: 62  NNPSR-------------------------------------------KIFQLLATKNAL 78
           +  +                                            +I  +     A 
Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 216

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDA 128
                +       P+  +     D                                 L A
Sbjct: 217 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 276

Query: 129 VRNSQLLMVLDHVNDPHNIGAILR-----SAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              +   + +       +I   L               +      +  +           
Sbjct: 277 AMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGWV 336

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H    +  +  DA        +      S   +    +      +LI+G E  GL  +
Sbjct: 337 KGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHGLSRE 396

Query: 244 TQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A         + M   + +LN + AA V L+  +   
Sbjct: 397 ALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 437


>gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 151

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++L   L+K+ +             +P          A + G E +GL     +   +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLNSDH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 154

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   L ++      H       + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRAGLDY--HDLAHVYRHK 61

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             A  K      +    ++ +              LI G E +GL  +  E+        
Sbjct: 62  DFAAFKEAMGDRRLFACTTKTTNYHTNAKFEQGDVLIFGPETRGLPAEFIESLPLEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA A+  +     
Sbjct: 122 IPMQPDSRSLNLSNAVAIIAFEAWRQ 147


>gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 150

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                   +  +       +        ++ +KK            ++ G E +G+  + 
Sbjct: 50  YWNSVDLHTWDSLEELIKANPDSNFYFATTKTKKKYSDVKYEKNDFIVFGPESRGVPEEI 109

Query: 245 QETATS-MAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E        + M  + ++LN+SN+AA+ LY     
Sbjct: 110 LEANKENCITIPMIKMGRSLNLSNSAAIILYEALRQ 145


>gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
 gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
          Length = 159

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+ +         L + + K           +   L+ G E +GL  +  E+     
Sbjct: 64  QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPAEVIESLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 253

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 14/244 (5%)

Query: 36  FNQKSRHTS---QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
             +  +      +       G   +     +P  +   +L T     RL    +LP   P
Sbjct: 15  LYRDVKDRDLTGRQGLFMAEGKVVLERLFTSPVAETVSVLTTPE---RLGGLVSLP-DAP 70

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAI 150
           V  VP   ++++ G   +H+G            L       +  ++ L  + +  N+G +
Sbjct: 71  VYVVPQGVMNQVAGFP-IHRGYLALGRYAPKQALSERVSGTTARVLALYGIANTDNMGGL 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A AF  D ++              + + G       +      D +  +   G    
Sbjct: 130 MRNAAAFGADAVLLDTTCCDPLYRKAIRVSVGG---ALEVPHYRTDDMVGTLRGLGLTPY 186

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GLS      LE+ + + + A++ GAEG GL  +          + M G   +LNV+  + 
Sbjct: 187 GLSPSGAVTLEEVMPDPRSAVLFGAEGPGLPAELMAAC-RTVRIDMHGGFDSLNVATTSG 245

Query: 271 VALY 274
           + LY
Sbjct: 246 IVLY 249


>gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group]
          Length = 254

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 9/158 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G+I R+  A +    +        +   L ++      ++     
Sbjct: 72  MLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYVVVKIH 131

Query: 193 SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +  +          +      +                 L+ G+E KGL     E  + 
Sbjct: 132 DSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCSR 191

Query: 251 ------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                    + M    ++ LN+S +  VALY       
Sbjct: 192 EGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 229


>gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+  + 
Sbjct: 1   MPNHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWEHVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETAT 249
             +L D ++         I   SD          +++    + G E  GL  +  +E A 
Sbjct: 61  HDSLEDFIEYSKDGDVYLIETYSDEPFTTHDFSNSERDLYFMFGRETTGLPKEFAKERAD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +     I++LN+SN AA+ +Y       
Sbjct: 121 MCLRIPQSDHIRSLNLSNTAAIVIYEVLRQQN 152


>gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 308

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 32/259 (12%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV------------ 93
                  G   V AAL     ++  L   ++A AR            V            
Sbjct: 30  EGRFLAEGFQAVEAALATG--RLTDLFVGESAAARFGELVAKVAGTGVPVRPVTDPAAAA 87

Query: 94  --KTVPPQ-----------TIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLD 139
             +TV PQ            +  + G      G                +    L+ V  
Sbjct: 88  LSETVTPQGLVGVATLPATRLADLTGLRGRPAGEATRPAGGTGQLGQAGMVRPSLVAVCV 147

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
             NDP N G ++R+A A   D ++              +S++G+L H+P +   +L  A+
Sbjct: 148 AANDPGNAGTVIRTADAAGADAVVFAGDGVDPFGGKCVRSSAGSLFHLPVVMEPDLGVAV 207

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             + + G + +  S    + L +       +     + G E  GL P     A ++  + 
Sbjct: 208 DWLRANGCRVVATSGHGARDLYEAADAGELDGPTGWLFGNEAHGLSPDALAAADAVLRVP 267

Query: 256 MPGIIKALNVSNAAAVALY 274
           + G  ++LN++ A A+ LY
Sbjct: 268 VYGQAESLNLAVATALCLY 286


>gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 217

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 1/151 (0%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R +   + ++ V   HN  A++R+   F      + +              + 
Sbjct: 18  FREIIGQRTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ 77

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                 +   +                          L     + K A   G E +GL  
Sbjct: 78  -KWVDVFRYDNTQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSE 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +    A +   + M G  ++LN+S A A+ L
Sbjct: 137 QVLSQADTFLKIPMVGFTESLNISVAVAIVL 167


>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
          Length = 448

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 75/341 (21%), Gaps = 64/341 (18%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 102 KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 159

Query: 62  NNPSR-------------------------------------------KIFQLLATKNAL 78
           +  +                                            +I  +     A 
Sbjct: 160 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 219

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDA 128
                +       P+  +     D                                 L A
Sbjct: 220 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 279

Query: 129 VRNSQLLMVLDHVNDPHNIGAILR-----SAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              +   + +       +I   L               +      +  +           
Sbjct: 280 AMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSDYGWV 339

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H    +  +  DA        +      S   +    +      +LI+G E  GL  +
Sbjct: 340 KGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHGLSRE 399

Query: 244 TQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A         + M   + +LN + AA V L+  +   
Sbjct: 400 ALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 440


>gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 158

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI--PYI 190
              +VL     P N G I+R      C+  +        +   L ++     +       
Sbjct: 1   MFHVVLFEPEIPPNTGNIMRLCANTGCELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSH 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
           R         ++ S   +    ++   +   + +      +++G E +GL     E+  A
Sbjct: 61  RNWEECLHAIRVKSPSTRVFACTTKGSQAHTKAVFQSGDIILMGPETRGLPINIIESTPA 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LN+SNA AV LY     
Sbjct: 121 EYRIRIPMAPESRSLNLSNATAVILYEALRQ 151


>gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 + +    +A    H         ++ +++   +   +    LI G+E +GL  +
Sbjct: 51  YWKDLDLTVWESIEAFLAEHPIDGHCHLATTKTERLYWEAEYHPGDWLIFGSETEGLPAE 110

Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + M    +++N+S A  +  Y     
Sbjct: 111 LLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQ 147


>gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
 gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249
             +L +  +   +  F  I                ++    + G E  GL  +  E    
Sbjct: 61  HDSLDELFEAYENGKFFFITKFGQKPHTSFDYSNTEEDVFFVFGRETSGLPKELIENNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198]
 gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198]
          Length = 251

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 7/246 (2%)

Query: 31  KKMQSFNQKSRH---TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           KK    +QK  H     + E+L +YG  T    L    + I ++  +K     +      
Sbjct: 2   KKQLRHDQKPTHNPAQPKQEDLIVYGKQTSLYILEQMPQIIKEVYFSKEMERGVFHQFAK 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H  P+  +  +   + + K   HQG+ L+ + L       ++ S+ L++L  + D  NI
Sbjct: 62  IHK-PILKIDNKK-AQALSKNGNHQGVFLKISALEYTPFKILKKSEKLLILHGITDTGNI 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+I RSA     DGI+         S       S          +      +        
Sbjct: 120 GSIFRSAYCLGVDGIVLCG--VRGFSIEGVLRTSVGAILQMPFCVVENILDVIHELKNEK 177

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                +    +   +     K AL LG+E  GL  +       +  + M     +LNV  
Sbjct: 178 TLCLGADARGEEEGRIAGVQKWALFLGSENTGLPSQVLSKLDRILAIKMHRGFNSLNVGV 237

Query: 268 AAAVAL 273
           AA + +
Sbjct: 238 AAGILI 243


>gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis]
          Length = 1848

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 2/148 (1%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++V   ++ P N+G + R+   F  + +I       S+    + S +            
Sbjct: 1690 LVLVASLIDKPSNLGGLTRTCEVFGAEQMIVHSLSCTSDKLFQSLSVTAHKWLKMSEVKR 1749

Query: 194  NLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
               +   +              ++    L +     K  ++LG E +G+ P      ++ 
Sbjct: 1750 WELEEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSAC 1809

Query: 252  AHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   G++++LNV  +  + ++     
Sbjct: 1810 IEIPQVGVVRSLNVHVSGGITVWEFTRQ 1837


>gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 156

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL   + P N G I  +  A      +       ++  ++ ++       +    
Sbjct: 1   MAIHVVLYQPDIPANTGNIALTCAATDTSLHLIRPLGFSTDEEMIKRAGFDFWNSVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++ D   K     +        +    +    + +   + G E  GL     E     
Sbjct: 61  YDSMDDFFSKNQGEFYYIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPKDLLEENKDH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+S+ AA+ +Y     
Sbjct: 121 FLRIPMNDNVRSLNLSSTAAILVYEALRQ 149


>gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
          Length = 156

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           S+    +Q +     +    ++   + +           + GAE +GL    +E    T 
Sbjct: 61  SSWDALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDCFVFGAETRGLSDAVREQFAPTQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ AVA++     
Sbjct: 121 RLRLPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329]
          Length = 159

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
              L+ +         L + + K               L+ G E +GL  +  E      
Sbjct: 64  QAFLEYLDKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIEGLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54]
          Length = 262

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 91/282 (32%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS                   R++   K +      +     P  + L GVH   A 
Sbjct: 1   MKHISS------------------RDNPAVKALLKLAGTAGKRGAP--VLLDGVHLCQAW 40

Query: 61  LNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +       +   +  A   +   A          +  + +  +   E+      + T 
Sbjct: 41  LQHHGAPDQAIFDVERLAQPDIAALAAAVPDARCLALDARLMQALASVESGQGVAFVVTP 100

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P LS       N  L    D + DP N+G +LR+  A     +      + + S  + +S
Sbjct: 101 PPLSLPAAVDENCVLF---DRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRS 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             GA   +      +L+  L  +      T    +             + A + G EG+G
Sbjct: 158 GQGAHFALAIHEHVDLSALLPTLGVPLVATALEGAQDLYAGR---LPARCAWVFGHEGQG 214

Query: 240 LRPKTQETATSMAHLH--MPGIIKALNVSNAAAVALYITQNH 279
           +  +    A     +   M   +++LNV  AAA+ L+  +  
Sbjct: 215 VAAELLAAARLKLRIPHDMA-AVESLNVGAAAAICLFEQRRQ 255


>gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
 gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
          Length = 156

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     EH+    
Sbjct: 1   MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             N+    +      +        +    +     +    I G E  GL    + +   +
Sbjct: 61  HENIESFFESTDGEYYLLTKFGKQTYSDFDFSDTQNNHYFIFGRETTGLPDWVKDKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7]
          Length = 169

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+ VA      +           ++ ++      H+ Y  
Sbjct: 1   MSMNIVLLEPEMPANTGNIGRTCVATGTKLHLIKPLGFEITDKMVKRAGLDYWPHLNYEV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             N  D L+K      +    ++ ++    +        L+ G E  G+  +   +    
Sbjct: 61  YENFEDFLEKNPDCIGKLYMATTKARHIYTEVAYEPDSYLMFGKESAGIPEEILVKYEDY 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN+ A+ LY     
Sbjct: 121 CMRIPMEYNIRSLNLSNSVAIVLYEALRQ 149


>gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 263

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 14/244 (5%)

Query: 44  SQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQT 100
            + E    + G  +  A   +   KI +L  ++    +          +    + V    
Sbjct: 11  KKFEKELPVCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDE 70

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           ++K+  +   HQG+         P L+        +N + +++LD + + +N+GAI+RSA
Sbjct: 71  LEKLS-ESVHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  + I+ TK    +     A   +        I   + T    +        IG   
Sbjct: 130 AFFGIENIVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDL 189

Query: 215 DSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +   +        K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA 
Sbjct: 190 RAHHEIADLGRLIEKDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAAT 249

Query: 271 VALY 274
           +  +
Sbjct: 250 LFCH 253


>gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 153

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 49/151 (32%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      + L   + P N GAILR +        +            L ++    LE   
Sbjct: 1   MPQLGFRIALFQPDIPGNTGAILRLSACLGLAVDLIEPAGFDLSDRALKRAGMDYLELAA 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R ++  D     H    + I  ++    P +     D   L+ G E  G+        
Sbjct: 61  LRRHASWEDFNSWRHQEARRIILFTTAGTVPYQCFSFRDGDILMFGRESSGVPDHVHNAV 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LNV+ AAA+A       
Sbjct: 121 NYRLVIPMKEGTRSLNVAMAAAMACGEAVRQ 151


>gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 163

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS VA      +            + ++      H+     S+ 
Sbjct: 3   IVLYEPEMPMNTGNIGRSCVATKTKLHLIEPLGFRLSDREIKRAGLDYWPHLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L +            +                ++ G E +G+  +   E   +   +
Sbjct: 63  RDFLDRNPGAKIYMATTKA--PNVYSDVKYEPDCYIMFGPESRGIPEEILVENQETCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G  ++LN+SN+ AV LY     
Sbjct: 121 PMWGETRSLNLSNSVAVILYEALRQ 145


>gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573]
 gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573]
          Length = 158

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           + L       N G I+R       +  +        E   + ++     +   +   +  
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
                  +     F+    ++ + +            L+ G E +GL  +   +      
Sbjct: 64  AAFVEYLQRERGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELITSLPTEQR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  +     
Sbjct: 124 IRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168]
 gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168]
          Length = 159

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFTAVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL     +   A  
Sbjct: 59  RHHDYAAFLAAEKPQRIFALTTKGTPAHSVVSYQQGDYLLFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N+SNA +V +Y     
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 169

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              + ++L ++    N+GA+ R+A A   D I+ T   +      + K+A GA E +P+ 
Sbjct: 14  RHPVTLMLYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQETVPWR 73

Query: 191 RISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             ++  +A+   K  S     + ++ +S+        +  +ALI+G E +G+        
Sbjct: 74  HFADPVEAITVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDALLSHC 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +  +   G+  +LNV+ AA VAL+     F K
Sbjct: 134 DGVIEIPQYGVKHSLNVAVAAGVALFECVRVFRK 167


>gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase in gldA
           3'region; AltName: Full=ORF3
 gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli;
           ORF3 [Geobacillus stearothermophilus]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +    
Sbjct: 1   MALHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ-ETAT 249
             +L    Q+  +  F  I                 K I  I G E  GL  +   E   
Sbjct: 61  YDSLDHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENED 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   ++ALN+SN AA+ +Y     
Sbjct: 121 RCLRIPMTENVRALNLSNTAAILVYEALRQ 150


>gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
 gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHPDYAAFVAAEHPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
 gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 157

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                + L       N G I+R A    C   +        E   L ++      H    
Sbjct: 2   FIMFHIALYEPQIAPNTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDY--HDLAK 59

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249
              +   +       G +    ++   +P ++        L+ G+E  GL    +     
Sbjct: 60  VKRHPDYSSFLGAVAGCRIFACTTKGSRPYDEPAYQPGDVLLFGSETAGLPEDIRNGFDP 119

Query: 250 -SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LN+SN+ A+  Y     
Sbjct: 120 AFRIRIPMEPDCRSLNLSNSVAIISYEAWRQ 150


>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P+N G I R+  A      +       +E   L ++     + +  I  
Sbjct: 1   MFNIVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            N  +  +K     F  +      K+   +        L+ G E +GL  +  E      
Sbjct: 61  ENFQELREKYPEGRFFYLSTKG--KRYYHEVSYKPGDFLVFGKETQGLPQELLEANKEFT 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M   I++LN+SN  A+ +Y      
Sbjct: 119 FRIPMLPQIRSLNLSNTVAIVVYEALRQL 147


>gi|209963609|ref|YP_002296524.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209957075|gb|ACI97711.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 259

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 19/270 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLA 73
            +D +       +  +K   S   +           L G  TV  AL  +P R    L A
Sbjct: 2   RRDRYRLIESPQNPGFKLWDSLLDRRGLRR-HGRFLLAGRKTVPEALMRHPDRFGTVLAA 60

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
               +  L     LP       + P   +++         L      + +  L A     
Sbjct: 61  DPGQIDALP----LPPGIEALLLAPALFERLDVTGTGFPLLVGSVPAMPAIDLSAPPVGL 116

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+    + DP N+GA++RSA AF    +I  +  +        ++A+ A   +      
Sbjct: 117 ELVCA--LGDPANLGALMRSAAAFGVRTLILLEEAAHPFHPKCLRAAANAQFELSLRTGP 174

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                            G    +            + L+LG EG+GL P           
Sbjct: 175 GWRGLAGIAGPVFGLDGGGHDLTD-----FDWPADVRLVLGEEGQGLPPDL---PVERLA 226

Query: 254 LHMPGIIKALNVSNAAAVALY---ITQNHF 280
           +   G +++LN   AA++ALY    ++ H 
Sbjct: 227 VPTTGAVESLNAMVAASIALYSHHASRRHR 256


>gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 289

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 102/250 (40%), Gaps = 19/250 (7%)

Query: 45  QPENLFLYGVHTVSAALNN-----------PSRKIFQLLATKNALARLDWDA-NLPHPFP 92
           + +     G   V  AL +               I ++L  +N +  L      L    P
Sbjct: 36  RGDRFIAEG-RVVLQALTDVLDDAGSGRGEARFVIEKVLFLENRIEGLGDLIDRLDADCP 94

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIG 148
           V     + +D  VG  A+H+G+      L  P+L    + + +  L++V   + +  N+G
Sbjct: 95  VYVAGREVLDAAVGF-AMHRGILALGRHLPPPSLGGFLEGLPDQALVVVACGIANHDNVG 153

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I R+A  F  D ++  +           + + GA   +P+ R  ++   + ++ S GF+
Sbjct: 154 GIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVGAALRVPFCRGGSILALVGELVSHGFE 213

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GLS    + L +     +  L+LG EG+GL  +      +   +     + +LNV+  
Sbjct: 214 VVGLSPRGAEELSRFQPGRRQVLLLGTEGEGLPEELLNAL-ATLRIEQAPGLDSLNVATT 272

Query: 269 AAVALYITQN 278
           + +AL+    
Sbjct: 273 SGIALWHIAK 282


>gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803]
          Length = 165

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ S L + L     P N G I R+  AF     +        +   L ++      H+
Sbjct: 3   HLKPSPLRVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHV 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +N       +            D    L+         L+ G E  GL    ++ 
Sbjct: 63  NLSVHTNFQAFKNSLAKPFRVIGCSRRD-GVALQGFCFEPGDVLLFGREDTGLPQPVRDQ 121

Query: 248 ATSMAHLHMP--------GIIKALNVSNAAAVALYIT 276
              +  + MP        G +++LN+S A A+A +  
Sbjct: 122 CDQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158


>gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
 gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
          Length = 156

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFHVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +   L++    P  Q         + G+E +GL P+ +E+   + 
Sbjct: 61  DSWDALMASEQPDPSRMFALTTHGSTPFGQVSFQPGDWFVFGSETRGLAPERRESFPPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V   L     ++  +   K   NA           H      V    +DK+     
Sbjct: 16  GIKPVLDQLRQSPDRVDSVTIRKGRKNADTDAIVTLCRRHGIRFTFVQDTALDKLFS--G 73

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           ++ V         +L++ LD V DP N G + R+  A    GII
Sbjct: 74  NHQGVVARVFNAGYVEVEDVLEAALASPLKLVLALDQVQDPGNAGTLARTLYALGGGGII 133

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQ 222
             K  + +  +   K+++GAL  +P  R +NL+ AL+               D       
Sbjct: 134 MPKHNASALGSAAVKASAGALARLPVARATNLSRALETAADQGFSIYAARFDDGSVNAFT 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +    L+LG E KG+RP   +  T+  H+ M     +LNV+ A A+ +
Sbjct: 194 ARLDTPAVLVLGNEDKGVRPGVAKRCTASIHIPMQREFDSLNVAQAGAMLM 244


>gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 271

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 100/264 (37%), Gaps = 13/264 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALA 79
            R++R         ++SR   +       G       ++ A  NP   + +L  T  A A
Sbjct: 4   ERSNRIV-AAHKLLRRSR-RVEAGEFLAEGAPAVAEAIAHAAENPG-AVLELYLTAAAGA 60

Query: 80  RLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R              V  V  +    +    +    +     P+ S       + +L+ V
Sbjct: 61  RHTELVRRAYAAGITVTQVTDRAAASLSDAVSPQGLVVRCALPMTSVADLLAGSPKLVAV 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L   +DP N G ++R A A   DG+I     +   +A   ++++G++ H+P +   +   
Sbjct: 121 LVQTSDPGNTGTVIRLADAAGADGVIVAGEAADPWNAKAIRASAGSVFHLPVVPARDPAA 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAH 253
            + ++ + G   +  +  +   L             A + G+E  GL  +    A     
Sbjct: 181 LIGELTAAGLSVLASTGQADVELGSAQAEGILDLPTAWLFGSEAHGLPAEIIGRADERIR 240

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + + G  ++LN++ AAAV LY + 
Sbjct: 241 IPIYGRAESLNLAAAAAVCLYASA 264


>gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
 gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
          Length = 156

 Score = 79.5 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT-S 250
           ++    + K      +    ++       +         + GAE +GL      + A   
Sbjct: 61  ADWAAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDPVLGQFADEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
 gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine.
 gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine
          Length = 165

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 4   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 63

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247
            +    L        Q   L    +                L+ G E +GL     +   
Sbjct: 64  HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 123

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    +++N+SNA +V +Y      
Sbjct: 124 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 156


>gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
 gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
          Length = 157

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFTAIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL         A  
Sbjct: 59  HHADYAAFLSAEAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADILNALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136]
          Length = 158

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     PHN GA+ R  +A      +        +   L ++     + +     
Sbjct: 1   MLHIVLYQPEIPHNTGAVGRLCLATGARLHLIKPLGFSIDDKQLKRAGLDYWKDVDVRVW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
               D   +    G     L++ + +         +  L+ G E +GL      E   S 
Sbjct: 61  DRFEDLQAEAAPSGAPFYYLTTKTTQTYWNATFPAECYLVFGPETRGLPESLLAEQPASC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ A  + LY     
Sbjct: 121 LRIPML-DTRSLNLATAVGIVLYEAVRQ 147


>gi|167945644|ref|ZP_02532718.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 87

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                AL+ G E +GL     ++        + M   +++LN+SNA A+ LY     
Sbjct: 24  FEAGDALLFGPETRGLPQALLDSLPEQQQLRIPMRPEVRSLNLSNAVALILYEAWRQ 80


>gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516]
 gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1]
 gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516]
 gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92]
 gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis
           Angola]
 gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis YPIII]
 gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004]
 gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038]
 gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 162

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247
            +    L        Q   L    +                L+ G E +GL     +   
Sbjct: 61  HDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    +++N+SNA +V +Y      
Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153


>gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
 gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
          Length = 159

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 + +VL     P N G + R+         +            L +S     + +
Sbjct: 1   MSDKPHIHVVLFEPEIPQNTGNVARTCAVVGATLHLVEPMGFRLTERNLKRSGCDYWDDV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE 246
             ++ +++   L +  +         +++     +  +      L+ G E +G+      
Sbjct: 61  DVVKHASVEAFLSQHGNDELHLFTSHTETCYTDVRYGEGGGDVYLVFGRESRGIDEDVLA 120

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + M   +++LN+SNA AV +Y     
Sbjct: 121 AHVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQ 154


>gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis TXDOH]
          Length = 156

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +T   ++                 + G+E +GL P   E      
Sbjct: 61  RDWDAFVAAEAPDPARTFAFTTRGSGRFHDRAFQPGDWFVFGSETRGLAPALVERFAPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103]
 gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103]
 gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
          Length = 157

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFTAIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++                L+ G E +GL  +  +   A  
Sbjct: 59  FHADYQAFIATEQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLPAEILQALPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMAESRSMNLSNAVSVVVYEAWRQL 148


>gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 159

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+ +         L + + K               L+ G E +GL  +  ++     
Sbjct: 64  QAFLEYLEKERQGNYRLFACTTKTTGHHVDAQYQTGDVLMFGPETRGLPAEIIDSLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
 gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 20/280 (7%)

Query: 6   KKKSEKIFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
            ++ +K  ++ + H   +    N+  +K+++      R   +     + GV  V+ AL  
Sbjct: 228 SRRQQKAAAM-NRHRVHVIESENNARFKELKKLLG-GRGVKKQNLALVAGVKPVTEALAA 285

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPLL 122
              +    +  ++     +   N P     + + P   + + V        L   ++  +
Sbjct: 286 FPDQCRAWITRQDQTPPPE---NAPSHLAWEQLAPALFEALDVFGTRAPLLLFEPSSMGV 342

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               +       L++     DP N GA +RSAVAF    I+     +        ++++G
Sbjct: 343 WRPDEGFSPGCTLLLPFQ--DPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAG 400

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A+ H P                     I   S    P+          L+ G EG GL  
Sbjct: 401 AVLHAPLFEGP------SLKDLPEDLPIVPLSMEGAPITGFSFPAAFGLLAGIEGPGLPD 454

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +  A     + + G +++LN + A AVALY   +   K
Sbjct: 455 AWRSRA---VSIPVTGAVESLNAATAIAVALY-AWSQAGK 490


>gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 161

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V   +N+GA  R+A   +   +      +      ++K+A GA E +P+    + 
Sbjct: 11  VLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGAEETVPWEHGWDA 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHL 254
            +  + + + GFQ   + ++ +     + +    + ++ G E  GL P+    A     +
Sbjct: 71  VEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFGHEVGGLLPELLALADVHMRI 130

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M G   +LNV+ A  V LY    
Sbjct: 131 PMRGEKTSLNVATAGGVVLYELLR 154


>gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 156

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+         +            LA++     + +  +R 
Sbjct: 4   PLNIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRW 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
                  +   +         +            +   L+ G E +GL     E  A   
Sbjct: 64  PCAEAFFEAHAADELHLFTGQACRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAHANRC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SNA AVA Y     
Sbjct: 122 VRIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis]
          Length = 195

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++  +V+  HN+G + R A AF+   +         +        S       +    +
Sbjct: 1   YLITYNVSKKHNLGTLARCATAFNVRQLCLVG---SRQFNTFGAHGSSEYVDFCHYNTLD 57

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 K +           D  +P+ +       A +LG EG+GL  K      S  ++
Sbjct: 58  ECCQDLKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCDSFLYI 117

Query: 255 HMPG-IIKALNVSNAAAVALYITQ-------NHF 280
              G    +LNV+ AA++ L+             
Sbjct: 118 PQYGAGTASLNVAVAASIVLHHFALHAGYGERQR 151


>gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
          Length = 179

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   L++VLDHV   +N+G++ R++ AF  + I      +    A + K+A GA E
Sbjct: 20  FKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHKTALGAEE 79

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRP 242
            + +    +  DA+ K+   G+    +       +       KN K A+I+G E KG++ 
Sbjct: 80  TVGWEYFEDTMDAVDKLKQQGYTVCAVEQAEGSTMLDKLLLDKNKKYAVIMGNEVKGVQQ 139

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +       +   G   +LNVS    + ++      +
Sbjct: 140 CVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 178


>gi|218528712|ref|YP_002419528.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218521015|gb|ACK81600.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 149

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR +        I            L +S    L+H+   R 
Sbjct: 1   MLRLALYQPDIPQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +             + +  ++    P  Q    D   L++G E  G+       A +  
Sbjct: 61  RSWDAFEAWRRETDIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+  AA+ L      
Sbjct: 121 VVPIRPGLRSLNVAICAAMMLGEAIRQ 147


>gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
 gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
          Length = 147

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     L++G E  G+  +      S   L M G  ++LNV+  A +AL      
Sbjct: 86  WDFKFKSTDTLVMGRESAGVPNEVHNACDSHIKLPMYGKARSLNVAMTAGMALSEALKQ 144


>gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 301

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 80/280 (28%), Gaps = 37/280 (13%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +    +  +   + E +F+ G+ T+        +    ++  +N    L+        
Sbjct: 13  KYIVRLRKSRKFREEQERVFVKGLDTIRTIAAAGQKFDTLMVVAENPSIALEGGVAANRT 72

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG---------LALETAPLLSPTLDAVRNSQ-------- 133
                VP   ++ I      +              +        +D              
Sbjct: 73  L---RVPRDLLEHITYNHHFNAHLYGVTDERLCVGDIEMPKHAEIDWESGVCSERVPTES 129

Query: 134 ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              +++ LD +    N+G +L++A A     ++ T          + + +         I
Sbjct: 130 FPEIVLCLDGLQYTDNVGRLLKTAWAVGVSRVVLTPESCDPWDWKVLEESGAKYWDKMPI 189

Query: 191 RISNLTDALQKMHSWGF-------------QTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                   L K  +                Q        KK   +      + +++G+E 
Sbjct: 190 HTGVDAVRLLKFCAARQLLPVVATSSGVGRQGTEPLPTVKKLNVRNAGYRGVMVVVGSEA 249

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +G   +  E  T    L M     +LN S A  V LY   
Sbjct: 250 RGPSMELLECCT-RVTLPMSMAADSLNASVAGGVLLYDIA 288


>gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
 gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
          Length = 164

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G                     +   +    ++ +KK   + I  +   ++ G E  G+ 
Sbjct: 47  GMDYWKDLELYVYEDFNDFVSKNPNARIYMATTKAKKAYTEVIYEENDFIMFGKESAGIP 106

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +   +   + M G I++LN+SN+ A+ LY     
Sbjct: 107 EEILIKYEDTSVRIPMIGEIRSLNLSNSVAIMLYEALRQ 145


>gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
 gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
          Length = 154

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +           G +    ++ +              L+ G E +GL  + 
Sbjct: 51  YHDLAHVHRHKDFTAFMQAMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + M    ++LN+SNA A+  +     
Sbjct: 111 IASQPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147


>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1]
          Length = 378

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 115/316 (36%), Gaps = 56/316 (17%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------QPENLFLYGVHTVSAALNNPS 65
                 H+AK ++      +   F +              P   +LYG + V AAL    
Sbjct: 61  KRKHAHHHAKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNPVLAALKAQQ 120

Query: 66  RKIF--QLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVGKEAVHQGLALETAP 120
           R+ F    L    +  +L     L     +          ++ +     VH G+ +ET P
Sbjct: 121 RESFGTLYLHNPKSTPKLAEILALARELELPVKSEYGKHDLNLMT-NNGVHNGIVVETKP 179

Query: 121 LLSPTLDA---------------------------VRNSQLLMVLDHVNDPHNIGAILRS 153
           +    L                                  L + +D ++DPHN+GAILRS
Sbjct: 180 IEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYIDEISDPHNMGAILRS 239

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D I+ ++R     S V++K++SGALE +P           ++  S G+  I   
Sbjct: 240 AYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFFEESRSNGWTIISSV 299

Query: 214 SDSKKPLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAHL-----HMP 257
           + S+       +           N    L++G+EG+G+R    + +  +  +      + 
Sbjct: 300 APSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIRTSLLQRSDFLVSVNSGRADLD 359

Query: 258 GIIKALNVSNAAAVAL 273
             + +LN S A A+ L
Sbjct: 360 ESVDSLNASVATALLL 375


>gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
 gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
          Length = 159

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                              +        ++ +K+  ++   +    ++ G E KG+  + 
Sbjct: 45  YWDKLKLFVYENIEDFYEKNPNANIYFSTTKAKRTYDKVEYSPNDYIMFGKESKGIPEEI 104

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +       + M G I++LN+SN+ ++ LY     
Sbjct: 105 LVKNEEHCVRIPMWGEIRSLNLSNSVSIVLYEALRQ 140


>gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 180

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + ++LD++    N+GA+ R+A A   + II T   +      + K+A GA E + +
Sbjct: 24  PRHPVTLMLDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRW 83

Query: 190 IRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               +     A  K        + ++  S+        +  + LI+G E  G+  +    
Sbjct: 84  EYCESALEAIATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRE 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +   G   +LNV+ AA V+L+    
Sbjct: 144 CDEVIEIPQYGAKHSLNVAVAAGVSLFEFIR 174


>gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 220

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----- 135
                 +P    V  V    +D +V     HQG+    AP    T D     + L     
Sbjct: 13  EKILNKIPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPG 71

Query: 136 --MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DP N+G ILR+A  F    II  +R S   + V+ K ASGAL  +    + 
Sbjct: 72  AFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVK 131

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+ +   G+  +  S    +   +    +++ +++G EG+G++    E +  +  
Sbjct: 132 NLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKRILMEKSDFVLR 191

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G + +LNV+ A  + L
Sbjct: 192 IPMYGNLSSLNVTVATGIVL 211


>gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170]
 gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170]
          Length = 216

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + + ++ V   HN  A++RS   F        +              +     +  
Sbjct: 29  RTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFGKRLDKNIAMGAQQWVDVKR 88

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +    +  +   +         D    L     + K AL  G E +GL  +  + A 
Sbjct: 89  HEDTESCISHLRDQGYQIIATTPHDD-SCLLNDFNLDKKTALFFGTEKEGLSEEVMQKAD 147

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + M G  ++LN+S +AA+ L
Sbjct: 148 GFLKIPMVGFTESLNISVSAAIIL 171


>gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 169

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R+ +A +    +        + A L ++    ++ + Y   
Sbjct: 1   MLHLVLYEPEIPQNTGNMMRTCMATNTKLHLIQPLGFSLDEAHLRRAGMDYMKELDYRLY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250
            N  D  ++  S  +  +              + +    L+LG E  G+      +    
Sbjct: 61  ENWDDFTKQNPSNNYYYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPKAILAKQLDH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN AA+ +Y      
Sbjct: 121 CMRLPMVANARSLNLSNCAAIIVYEVLRQL 150


>gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
 gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
          Length = 128

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  AL++G EG+G+ P   + A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 78  EDFALVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 127


>gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 259

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 9/236 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +       G   ++      +    +++  ++     +   N+     V  +     
Sbjct: 24  YRDENNIFKTEGEKFLNE-----NINFNKIIIKESKYDYFNEKYNIEEYNNVTVLKDDLF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +++       +                    + ++VLD V DP N+G I+R+  A     
Sbjct: 79  EEVS----TQENSQGIIFLFSKDLNSINDIEEDVVVLDDVQDPGNLGTIMRTMEAAGFKN 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I TK      +    ++  G + ++  I  +                     +      
Sbjct: 135 LILTKGSVDVYNPKTVRATMGGIFNLNIIYETPENILKFLKEKEYLIITTALHEDAVSYG 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     K A I G EG G+     E +   + + + G I++LNVS A  + LY  +
Sbjct: 195 KIELKKKNAYIFGNEGGGVSDYFIENSDIKSIIPIYGNIESLNVSIAVGIFLYKMR 250


>gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax]
          Length = 214

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + + ++    NIG+I+RS VAF    I    R     +          +    +  + 
Sbjct: 1   MYVAIYNIGKKKNIGSIVRSCVAFRVSKIFVVSRKKNQVNFFGHMGTCEYITIEYFSSMK 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L   L+      +     SS           N   A + G EG G+  +T      + +
Sbjct: 61  ELKTHLRDNGILLYACEITSSAVPVTRRPFE-NKDTAFLFGNEGTGINDETLSYCDKVVY 119

Query: 254 LHMPGI-IKALNVSNAAAVALYITQ 277
           +   G    +LNVS + A+ L+   
Sbjct: 120 IPQYGNGTCSLNVSVSCAIILHHFA 144


>gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 165

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            V N  L +VL     P N G I+R          +        +   + ++      H 
Sbjct: 7   YVTNFMLDIVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDY--HE 64

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               + + +           +    ++       +       AL+ G E +GL  +  ++
Sbjct: 65  FANVVRHASLEAYIESRQPKRVFACTTKGTTFFAKAEYQKGDALLFGPETRGLPNEVIQS 124

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M    +++N+SNA +V +Y      
Sbjct: 125 LPPEQRVRIPMLADSRSMNLSNAVSVFVYEAWRQL 159


>gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 220

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 8/200 (4%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----- 135
                 +P    V  V    +D +V     HQG+    AP    T D     + L     
Sbjct: 13  EKILNKIPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPG 71

Query: 136 --MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DP N+G ILR+A  F    II  +R S   + V+ K ASGAL  +    + 
Sbjct: 72  AFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVK 131

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+ +   G+  +  S    +   +    +++ +++G EG+G++    E +  +  
Sbjct: 132 NLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKRILMEKSDFVLR 191

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G + +LNV+ A  + L
Sbjct: 192 IPMHGNLSSLNVTVATGIVL 211


>gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
 gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
          Length = 159

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
              L+ +         L + + K               L+ G E +GL  +  E      
Sbjct: 64  QAFLEYLDKEKQGNYRLFACTTKTTGHHVDAQYKAGDVLMFGPETRGLPAEIIEGLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|254714766|ref|ZP_05176577.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717827|ref|ZP_05179638.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
          Length = 159

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN++ + A+          +K
Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152


>gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
 gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
          Length = 154

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVRRAGLDY--HEFSHVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++    P  Q        L+ G E +GL  +  E+     
Sbjct: 59  RHPSLESYLATEKPKKVYACTTKGSGPYHQAQFAAGDCLLFGPETRGLPMEIIESLPNEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y +    
Sbjct: 119 RLRIPMQPNSRSMNLSNAVAVFIYESWRQL 148


>gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
 gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
          Length = 157

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDY--HEFADIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++                L+ G E +GL     +   A  
Sbjct: 59  RHHDYATFLASECPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPATILDNLPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148


>gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
 gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
          Length = 160

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 2/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++N  L +VL     P N G I R+  A      +       ++  +L ++     +++ 
Sbjct: 1   MKNVALHVVLYQPEIPANTGNIARTCAATGTSLHLIRPLGFSTDDKMLKRAGLDYWDYVD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET 247
                +L +   K     F  I     +           K    + G E  GL     E 
Sbjct: 61  VHYYDSLQELFDKYKEGEFFFITKFGKTYYTSFDYSDQTKDYFFVFGRETSGLPKDLIEN 120

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M   +++LN+SN AA+ +Y       
Sbjct: 121 NMERCLRIPMNEYVRSLNLSNTAAILVYEALRQQN 155


>gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii]
 gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 198

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++   V+  HNIG I+RSA AF    +        +        A  A  H   +    
Sbjct: 2   YIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAFRHFDTLAKCV 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 +        I   +   +           A +LG EG+G+  +         ++
Sbjct: 62  QHLKEVEGCRVLGVEICEGALPVQEHP---FTGPTAFLLGNEGQGMTDRQMALCDGFVYI 118

Query: 255 HMPG-IIKALNVSNAAAVALYITQ-------NHF 280
              G    +LNV+ AA++ L+             
Sbjct: 119 PQHGAGTASLNVAVAASIVLHHFAIWAAYPERQR 152


>gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 198

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              ++        +  +   A++LG E KG++    + +     +   G   +LNVS   
Sbjct: 125 QNPTNHQHPTPNTQHPSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTT 184

Query: 270 AVALYITQNHF 280
            + ++      
Sbjct: 185 GIVIWEFARQL 195


>gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens 200]
          Length = 154

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKNDVLLFGPETRGLPMAIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
          Length = 164

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        +   L ++      H      
Sbjct: 1   MLDIVLFEPEIPPNTGNLIRLCANTGFRLHLIEPLGFALDDKRLRRAGLDY--HEWARVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +             + + +S+  +    +    +  AL+ G E +GL     +      
Sbjct: 59  VHADWRAFLESVQPARVLAVSTRGRTGYHEVAYREGDALVFGPETRGLPQAMLDALPPAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ ++      
Sbjct: 119 RLRIPMLPDSRSLNLSNACAILVFEAWRQL 148


>gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 255

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 14/244 (5%)

Query: 44  SQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQT 100
            + E    + G  +  A   +   KI +L  ++    +          +    + V    
Sbjct: 3   KKFEKELPVCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDE 62

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           ++K+  +   HQG+         P L+        +N + +++LD + + +N+GAI+RSA
Sbjct: 63  LEKLS-ESVHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  + I+ TK    +     A   +        I   + T    +        IG   
Sbjct: 122 AFFGIENIVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGRLTCIGTDL 181

Query: 215 DSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +   +        K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA 
Sbjct: 182 RAHHEIADLGRLIEKDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAAT 241

Query: 271 VALY 274
           +  +
Sbjct: 242 LFCH 245


>gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno]
 gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno]
          Length = 220

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 1/149 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +   R +   + ++ V   HN  A++R+   F      + +              +   
Sbjct: 23  EIIVQRTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ-K 81

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +      +                   +   L       K A   G E +GL  + 
Sbjct: 82  WVDVFRYNDTQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSAQV 141

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A +   + M G  ++LN+S A A+ L
Sbjct: 142 LSQADTFLKIPMVGFTESLNISVAVAIVL 170


>gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 157

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 157

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 153

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +       
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     ++     
Sbjct: 61  KNFESFLKAMQGKRIMACTTKG--SRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148


>gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 163

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +     +        ++ G E +G+      +   +   + M G I++LN+SN+
Sbjct: 75  YMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVKNQETCVRIPMWGDIRSLNLSNS 134

Query: 269 AAVALYITQNH 279
            ++ LY     
Sbjct: 135 VSIILYEALRQ 145


>gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 216

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   A++ G E +G+  + +       ++ M G  ++LN+S AAA+ +   
Sbjct: 133 HYDWTVPTAVVFGNEREGVSDEARALRDGAVYIPMFGFTESLNISVAAALVMSHA 187


>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
          Length = 218

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 12/225 (5%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            ++ A++    KI +       L      A L        +    ++++         +A
Sbjct: 2   LIAEAISAGW-KIEEQFIAPGGL------AVLGTDARTFDLENGVMERVASTTTPQPVIA 54

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              A   S  L AV+ +  +++ D ++DP N+G ILRSA A     ++ T     + +  
Sbjct: 55  --IAERRSSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPK 112

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++++GA+ H+P I   ++ +           +                  KIAL++G 
Sbjct: 113 VVRASAGAMFHVPIIEDVSVEEIRDNGFKVFGTSSHEQQG-SIDFTTADLTGKIALLVGN 171

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E  GL      +  +   +   G  ++LNV+ A  +  +      
Sbjct: 172 EAHGLDDNV--SVDAWLTIPHRGRSESLNVAMACTLVCFEAARQR 214


>gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 161

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R +    C   +        +   + ++     E+    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNIIRLSANTGCALHLIEPLGFSMDDKHMRRAGLDYHEYATVKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           ++    L        +   L++ + + + +        L+ G+E KGL    +++ T   
Sbjct: 61  ASWQAFLAGEQPAPERMFALTTRAGRSVYEAQFAPGDWLVFGSETKGLSDAVRQSFTLAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 SLKLPMIEGQRSLNLSNAVAVTVFEAWRQ 149


>gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SS3/4]
          Length = 164

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++  +        +  + ++ G E +G+  +   E   +   + M G I++LN+SN+
Sbjct: 75  YMATTKGEHVYTDVPYDPDVYIMFGPESRGIPEEILVENRENCIRIPMWGDIRSLNLSNS 134

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 135 VAIVLYEALRQ 145


>gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like
           [Xenopus (Silurana) tropicalis]
          Length = 158

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R A    C   +        E  +L ++     E     R 
Sbjct: 1   MFHIVLVEPEIPPNTGNIIRLAANTGCALHLIEPLGFSMEDRLLRRAGLDYHESARVQRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    ++       + + +++   +P+          L+ GAE +GL P  +E    + 
Sbjct: 61  ADWPSFMRTARPDPARMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPALRETFAPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMVPGQRSLNLSNAVAVTVFEAWRQ 149


>gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis
           M163/99/10]
 gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292]
 gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 159

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN++ + A+          +K
Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152


>gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 159

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+ +         L + + K               L+ G E +GL  +  ++     
Sbjct: 64  QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIDSLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
 gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
          Length = 152

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL +   P N G I R  V       I            + ++     + +     
Sbjct: 1   MFNIVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISEKAVKRAGLDYWDKLDLTVW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  + L+ + +         +D               +I G+E KG+      +   + 
Sbjct: 61  ESTDEFLKHVDTSRCFFATTKTDKPYFE--VEYKPGDYIIFGSETKGIDENILRQNFDNC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M    ++LN++ +  + LY       K
Sbjct: 119 ITIPMTKEGRSLNLAVSTGIILYEAIRQNFK 149


>gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 155

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       + T           + I  ++ +    +         L+ G E  GL  + 
Sbjct: 52  YHDLAHVTVHPTIEHLWEELGHKRVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLPAEV 111

Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E         + M    ++LN++N+A++A Y      
Sbjct: 112 AEDPHVDLAVRIPMLEGRRSLNLANSASIATYEAWRQL 149


>gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 150

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++      H+      + 
Sbjct: 3   IVLYQPEIPPNTGNIARLCAATRTPLHLIEPLGFTIDDKHLRRAGLDYWPHVDVTVHPDF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L ++           + +             A+++G E +GL             + 
Sbjct: 63  DDFLTRVSPARLVLASTRATAPHHR--FAFRPDDAIVMGPETRGLPADMLARYPDGVRIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN+S A  V L+     
Sbjct: 121 IWGEVRSLNLSTATGVLLFEALRQ 144


>gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis EO147]
          Length = 156

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +    ++                 + GAE +GL P+  E      
Sbjct: 61  RDWDAFIAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 156

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       +E  +L ++     EH+    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++ +         +        +         N+    I G E  GL    +E  A +
Sbjct: 61  HDSIEEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPDWVKEKYAKT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDNIRSLNLSNTAALLIYEALRQ 149


>gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
 gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 668]
 gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
          Length = 179

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              S            +VL     P N G ++R          +      P + A + ++
Sbjct: 11  HTHSHAFHRSNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRA 70

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                E+       +    +        +    ++                 + GAE +G
Sbjct: 71  GLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRG 130

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L P   +         L M    ++LN+SN  AV ++     
Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 172


>gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas
           atlantica T6c]
          Length = 154

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H     +
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDY--HEFANVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +           +    ++       +       AL+ G E +GL     ++     
Sbjct: 59  RHASLQAYMESRQPKRIFACTTKGTTFFAKAEYQLGDALLFGPETRGLPDDVIQSLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYEAWRQL 148


>gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
 gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
          Length = 170

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 ++ G E  G+  +   +       + M G I++LN+SN+ ++ LY     
Sbjct: 91  YEPDCYIMFGKESAGIPEEILVQHQEDCVRIPMVGDIRSLNLSNSVSIVLYEALRQ 146


>gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 245

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R   + ++++ V+DPHN  A+LR+A AF    +      +P     L    + 
Sbjct: 43  MYDVLNERTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRYAD 102

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               +          +  K   +      L   +    E  + +    L+ G E  G+  
Sbjct: 103 QWLTLHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNV-SKPTVLLFGNEHSGVSE 161

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279
           +    A     + M G +++ N+S AAA+ LY      +  
Sbjct: 162 EALRLADGTFVIPMYGFVQSFNISVAAALTLYDVTERARRQ 202


>gi|307944162|ref|ZP_07659503.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
 gi|307772508|gb|EFO31728.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
          Length = 159

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L   + P N G ++R A     D  +      P  ++ L ++    LE    IR 
Sbjct: 1   MPHLALYQPDIPQNTGTMVRMAACLGVDVHLIEPAGFPISNSALKRAGMDYLERARLIRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N         S   + + L++ S       I  D   L+LG E  G+     E   +  
Sbjct: 61  LNFDTFDNWRQSENRRLLLLTTKSSDSYTNFIFKDSDILLLGRESSGVPETVHEGVDARL 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   ++++NV+ +A + L      
Sbjct: 121 TIPMAEGLRSINVAISAGMVLGEALRQ 147


>gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2035

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 2/175 (1%)

Query: 107  KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            ++ V      E    L P     +   +++V   + +P NI  + R    F+ + I+  +
Sbjct: 1851 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESIVVPE 1910

Query: 167  RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +        +A  +SA   +     +                       + +  PLEQ  
Sbjct: 1911 KKVFEHPHFVAAARSAELWIPWEEVVPKDLPYYLEGLRRRGYVVVGIEQTAASVPLEQFS 1970

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++ A++LGAEG+G+             +   G+I++LNV  A A+ +Y     
Sbjct: 1971 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2025


>gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 156

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+         +            LA++     + +  +R  
Sbjct: 5   LNIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWP 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
                 +   +         +            +   L+ G E +GL     E  A    
Sbjct: 65  CAEAFFEAHAADELHLFTGQACRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAYANRCV 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   +++LN+SNA AVA Y     
Sbjct: 123 RIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 344

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LY 274
            +    E       L+LG E  G+RP   +       + M     +LNV+ A A+    +
Sbjct: 278 PRNPFTEPLRTPAVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGAILVGCF 337

Query: 275 ITQNH 279
             +  
Sbjct: 338 AARRQ 342


>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-3-3Ab]
          Length = 151

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 3/148 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A      +            L ++     EH+   R
Sbjct: 1   MPFHVVLVAPEIPANTGNIARTCAATRTPLHLVDPLGFRLSDRYLRRAGLDYWEHVQLHR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             + +  +Q      F    +   +              L+ G+E +GL P   ET    
Sbjct: 61  YPSWSALVQAHPEARFWCFSVRGKALYTE--VAYQPGDWLVFGSESRGLDPMFLET-YPS 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G +++LN+SNA A+AL+     
Sbjct: 118 VRIPLSGPVRSLNLSNAVAIALFEALRQ 145


>gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2045

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 2/175 (1%)

Query: 107  KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            ++ V      E    L P     +   +++V   + +P NI  + R    F+ + ++  +
Sbjct: 1861 QKKVSSWWTSEVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPE 1920

Query: 167  RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +        +A  +SA   +     +                       + +  PLEQ  
Sbjct: 1921 KKVFEHPHFVAAARSAELWIPWEEVMPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFS 1980

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++ A++LGAEG+G+             +   G+I++LNV  A A+ +Y     
Sbjct: 1981 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2035


>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
          Length = 351

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 103/307 (33%), Gaps = 77/307 (25%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTV 96
             + +   +YG   V AAL    R +++L   + +   L           L     VK  
Sbjct: 27  QREYQKF-IYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMA 85

Query: 97  P--PQTIDKIVGKEAVHQGLALETAPLLS------------------------------- 123
                 +   +     H G  LE +PL                                 
Sbjct: 86  FGGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALV 145

Query: 124 ---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                       D      ++++LD + DP N+GAI+RSA     D II   R S   S 
Sbjct: 146 NSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSP 205

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE------------- 221
           V  K+++GA E++  + +SN  D +Q+  + G++     +                    
Sbjct: 206 VTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTT 265

Query: 222 ---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVS 266
                       +++G+EG GL    +  A S+  +              P  + +LNVS
Sbjct: 266 EGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVS 325

Query: 267 NAAAVAL 273
            AAA+ +
Sbjct: 326 VAAALLM 332


>gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
 gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
          Length = 158

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                           K      + I  S    K   +        ++ G E KGL    
Sbjct: 56  YWSEVEIHYWPDLDTLKAAYPNGRFIYTSKKVAKTYVELEFRCGDFIVFGKETKGLPEDL 115

Query: 245 QETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279
            E   +    + + G +++LN+S +A + LY     
Sbjct: 116 IEANPATSVRIPIFGKVRSLNLSTSAGIVLYEALRQ 151


>gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 160

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
                +    L+ G E +GL  +  E +     + M  G ++++N+S AA + LY  
Sbjct: 93  HHFAFDPDDFLVFGPETRGLPQEILELSPHRVRIPMLEGRVRSINLSTAAGIVLYAA 149


>gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1]
 gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1]
          Length = 151

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++L   L+       +    ++   +P          A I G E +GL P+  +      
Sbjct: 61  ADLASCLES--LGHPRLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPGEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
          Length = 226

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 63  NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+       
Sbjct: 6   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 64

Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P L  +        L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 65  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 124

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 125 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 184

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 185 EGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 219


>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 306

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 17/260 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNP-SRKIFQLLATKNALARLDW 83
            +   K      +   +  +   + L     +          R+   L     A A    
Sbjct: 44  ENATVKHFVKLCKSKAYRDERGTVVLSSSVLMRECFGRAGEGREAKTLFVADWAEAPAGI 103

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAV-------HQGLALETAPLLSPTLDAVRNSQLLM 136
            A       V   P   + K  G                +             R+   ++
Sbjct: 104 RAKR-----VIRAPASVLKKCAGVNNADGLDAVGEFASPVIMNAREFVDGAKQRDVVRVL 158

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            ++ V DP N+G + R+AVAF  D +          +    ++A GA   + ++   +  
Sbjct: 159 AVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDFVAFDSFD 218

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHL 254
           D          +       +K+ ++ E      K  L+LG EG+GL             +
Sbjct: 219 DLASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRAC-KPVAI 277

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LNV  A  V +Y
Sbjct: 278 PMSGEMESLNVGIAGGVLMY 297


>gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis RP62A]
 gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU144]
 gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU045]
 gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU028]
          Length = 156

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       +E  +L ++     EH+    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++ +         +        +         N+    I G E  GL    +E  A +
Sbjct: 61  HDSIEEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPEWVKEKYAKT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSDNIRSLNLSNTAALLIYEALRQ 149


>gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 162

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-- 247
            +    L        Q   L    +                L+ G E +GL     +   
Sbjct: 61  HDYQAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALP 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    +++N+SNA +V +Y      
Sbjct: 121 AQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 153


>gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
          Length = 269

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 75/240 (31%), Gaps = 6/240 (2%)

Query: 45  QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +     + G  T+    + +       +L           D       PV       +  
Sbjct: 29  RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLRGDGPPVYLAGKDVMSA 87

Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + G      V         P     +       L++ L  + +  N+G + R+A AF  D
Sbjct: 88  VAGFPIHRGVLAVGLRGAEPPPESLIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +               + ++GA   +P+ R  +    L          + L+    + L
Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETL 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      +  L+LG EG GL       A     + M     +LNV+ A A+AL+      
Sbjct: 208 DALEPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLARLR 266


>gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
 gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 11/242 (4%)

Query: 41  RHTSQPEN--LFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           R             G   V    AL+   R    L+      +  D  ++LP   P+   
Sbjct: 31  RERDLTGRHGFIAEGT-VVLDQLALSERFRPSSVLVLRNRLSSIADRLSHLPADCPIYVS 89

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAIL 151
               ID+I G       LA         ++     +A+     +++   + +  NIGA+ 
Sbjct: 90  ERAVIDQIAGFPMHRGVLAHGIDTQPERSVTEVLDNAMAGYGPVLIAIGIANHDNIGALF 149

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF   G++              + + G +    + R  N  D +    + G++ I 
Sbjct: 150 RNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRSGNADDLIAAAEAAGYRPIA 209

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L+   +  L+     +++AL++GAEG GL     +       + M   + +LNV+  AA+
Sbjct: 210 LTPKGEHSLDDLEPTERLALVVGAEGPGLPENILDRLHG-LRIAMESDVDSLNVATTAAI 268

Query: 272 AL 273
            L
Sbjct: 269 VL 270


>gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
 gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
          Length = 163

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +            + ++       +     
Sbjct: 1   MLNLVLVEPEIPQNTGNIARTCAATRSRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            NL D   +  +     +   +            D+  L  G E  GL  + +E      
Sbjct: 61  ENLEDFFARTGAKDLWLMTTKAPRSYAE--AEFRDECWLFFGKETAGLPREFREAHRDRC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN++N+ A+  Y      
Sbjct: 119 IRIPMRPDARSLNLANSVAIVTYEALRQL 147


>gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580]
 gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580]
 gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2]
 gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580]
 gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580]
 gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2]
          Length = 157

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +         F  I           +   +N+    + G E  GL  +  E    
Sbjct: 61  HDSLDELFDAHPEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPKELIEQNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132]
 gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           ND132]
          Length = 153

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +       A++LG E +GL  +  E   +M  + + G +++LN+S A  + L+     
Sbjct: 85  HHRFAFRADDAIVLGPETRGLPMELME-GHAMVRIPIWGEVRSLNLSTATGILLFEALRQ 143


>gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
 gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
          Length = 157

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 5/152 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  +   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQE-TATSMA 252
            + L+  +   +  I                D   I  I G E KGL  + +E  +    
Sbjct: 64  DEFLEATNDKHYYLITKFGTKNYCDFDFSNTDNEDIYFIFGRETKGLPKEFREKYSEQAL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH--FAK 282
            + M   +++LN+SN AA+ +Y       F K
Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQNFNK 155


>gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 153

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +   +    ++ +++     +  +   ++ G E +G+  + 
Sbjct: 50  YWKDVKLTVWDSLTELMESNKNAKFYFATTKTRQKYTDPVYREDDYIVFGPESRGVPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E   +   + M    ++LN+SN+AA+ LY     
Sbjct: 110 LLENKENCITIPMLPKGRSLNLSNSAAIILYEALRQ 145


>gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
 gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
          Length = 156

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + A + ++     E       
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHEFAKIKVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           S+ +D LQKM     +   L++       +   +     + G+E KGL  +         
Sbjct: 61  SSWSDFLQKMSPDPSRMFALTTHGSPCFSKTSFHAGDLFVFGSETKGLSLEIHRFFPEGH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ A+ +Y     
Sbjct: 121 QIRLPMRPHNRSLNLSNSVAIVVYEAWRQ 149


>gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299]
 gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299]
          Length = 513

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 108/315 (34%), Gaps = 60/315 (19%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
               +  H  K  +  R  +   +  ++ R  +      ++G + V A L    R+    
Sbjct: 197 RTRWQTRHDEK--KAARHARGDLTLAERVRGEA------VFGRNPVLAMLAARRREEISA 248

Query: 72  LATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA--VHQGLALETAPLLSPT 125
           +  +     +  R    A        +      ++ +VG +    H G+  + +PL    
Sbjct: 249 VWIQEGSDASRDRALLKAVQARGITPEYASKHDLNMLVGGDGRRPHNGVVADASPLTPTP 308

Query: 126 LD--------------------------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +D                             +  + + LD + DP N+GA+LRSA     
Sbjct: 309 IDSLPLPAEWATDRAGDGSGSSVDDNQSRPSDPPVWLALDEIVDPQNLGAMLRSAHFLGV 368

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++   + S   S V++K++SGALE +    +  +   LQ+    G+   G  +     
Sbjct: 369 AGVVVCAKNSAPLSPVVSKASSGALERMDVRSVGVMPRFLQRCVEEGWDVFGADNAPDAE 428

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHL-------------------HMPGI 259
               +       +++G EG GLR   +     +  +                        
Sbjct: 429 DVTAVSVARPSVVVVGNEGAGLRTNVRRACNRVVRIEGGGGAERGVGEAGVGEGSEGGDT 488

Query: 260 IKALNVSNAAAVALY 274
           + +LNVS A  + L+
Sbjct: 489 VDSLNVSVATGILLH 503


>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 299

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+    +++    + S   S    + +     +   +      I       + L     
Sbjct: 9   ERSDPAVQRIIDVTKHS--RSVVRTVLIEDAEPLVEGIRAGLEFIEVYGVETSPLPGEVL 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A      PV+ V    ++ +   +   +   +   P      +  R +  ++VLD V  
Sbjct: 67  AACQQRDIPVRLVGSPIMNDLFKTDKKPKAFGIARVPRPWSFDELARTTGDIIVLDGVKI 126

Query: 144 PHNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
             NIGAI+R+     +   ++     +      L +++ G +  +P +  S         
Sbjct: 127 VGNIGAIVRTSFALGAAGIVLVDSDLATIADRRLVRASRGYVFSLPIVLASRADAIAHFR 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +        +       E    ++++AL+LG+E  G     +  A+    + +    ++
Sbjct: 187 RTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTSRSFESIASHSVSIPINPAAES 246

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNVS  A +ALY  + H+ 
Sbjct: 247 LNVSVCAGIALYE-RRHWN 264


>gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 156

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 316

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 93/272 (34%), Gaps = 29/272 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   ++ AL    R    +L +   LA +  D  + 
Sbjct: 43  DYISLTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLAAVPADLGV- 100

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV    P  +  I G E     LA           D + +++ ++V + +    N+G
Sbjct: 101 -DVPVYVAGPDVLAAITGFEVHRGALAAMGRQPPRAAADLLVDARRVLVCEDIVSHTNLG 159

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----------- 197
           AI RSA     D ++ + R +        + + G +  +PY R+    +           
Sbjct: 160 AIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLLRDAGFT 219

Query: 198 ---------------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                              +       +  +              ++AL+LG EG GL  
Sbjct: 220 LLALTPAADAEDLGSFAAGLTPRAAPALAPAPAPAPAPAPVPAAARVALLLGTEGAGLSA 279

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             Q  AT+   + M   + +LNV+  AA+A Y
Sbjct: 280 AAQAAATARVRIPMAHGVDSLNVAATAAIACY 311


>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
 gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
          Length = 224

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++ + V    N+ AI+R+  A     + +        ++    +AS       
Sbjct: 15  QRQPDLTVITEEVQKGRNLSAIIRTCDAVGIPEVHSVV-PREGFTSYNGTAASAHKWVDI 73

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   + L                    + K   +       AL++GAE  G+    +E  
Sbjct: 74  HHYSTALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLMGAEIWGVSEPARELV 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T   HL M G+I++ NVS A A  L   Q   
Sbjct: 134 THTIHLPMVGMIESYNVSVACAGILLEAQRQR 165


>gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 157

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8]
 gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8]
          Length = 262

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 6/213 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125
           +  ++  +                 V    P T+  +   E     +A            
Sbjct: 47  VEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAERRLRDPETV 106

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + +  +  ++VLD + DP N+G +LR+A  F    ++     +      + ++ +G+  
Sbjct: 107 PEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHW 166

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  R       L ++   G    G      +       +   AL+LG+E  GL     
Sbjct: 167 ALPLARTDAPGPFLDRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGLSAAVL 225

Query: 246 ETATSMAHLHMPGI---IKALNVSNAAAVALYI 275
           +       L         ++LNV+ A  + LY 
Sbjct: 226 DRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 258


>gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37]
          Length = 201

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +    L++LD + DP+N GAILR+ +A   DGII  K      +  + K++ G++ +  
Sbjct: 50  NKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGSVFYQN 109

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQE 246
            ++++NL+  + K+   GF T+  + D         K D  K  LI+G E +G+     +
Sbjct: 110 LVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDYRKVDFAKKILIVGNEDRGVNQLITK 169

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            A     + M   I +LNVS A  + L+  +N
Sbjct: 170 NADCRIKIPMNNKINSLNVSVALGIILFAWKN 201


>gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
 gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
          Length = 154

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R     +    +        E   L ++     E+   +  
Sbjct: 1   MFEIVLYQPEIPPNTGNIIRLCANSNTRLHLVKPLGFELEDKQLKRAGLDYHEYASLVVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +     Q +       +                     + G E +GL  + +   +   
Sbjct: 61  EDWEACKQALAGRRTFALTTKG--STRHSDIRFLPGNVFVFGPETRGLPEEIRAEFSPEY 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+AA+ LY     
Sbjct: 119 RIRLPMMPQSRSLNLSNSAAILLYEAWRQ 147


>gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
          Length = 312

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 6/213 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPT 125
           +  ++  +                 V    P T+  +   E     +A            
Sbjct: 97  VEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVETPQGVVAVAERRLRDPETV 156

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + +  +  ++VLD + DP N+G +LR+A  F    ++     +      + ++ +G+  
Sbjct: 157 PEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAGSHW 216

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  R       L ++   G    G      +       +   AL+LG+E  GL     
Sbjct: 217 ALPLARTDAPGPFLDRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGLSAAVL 275

Query: 246 ETATSMAHLHMPGI---IKALNVSNAAAVALYI 275
           +       L         ++LNV+ A  + LY 
Sbjct: 276 DRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 308


>gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
 gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
          Length = 167

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDS--------KKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L   +  G Q+ G  S                        L+ G E +GL P  
Sbjct: 61  HDYQAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPPFV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   A     + M    +++N+SNA +V +Y      
Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158


>gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 159

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++A+  G E +G+     + + +   + M G+I++LN++ +  + LY      
Sbjct: 83  QKRLAVWFGNESRGISEIAIKRSEACVQIEMAGMIESLNLATSTGIVLYEVTKQR 137


>gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum
           CFBP2957]
 gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CFBP2957]
          Length = 175

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 20  MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 79

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           +N    L+       +   L++    P            + G+E +GL  + +E    + 
Sbjct: 80  ANWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERREWFPPSQ 139

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 140 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
          Length = 160

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + + + ++     ++      
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVH 60

Query: 193 SNLTDALQKMH----SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-- 246
           ++  D +  M         +   +++    P            + G+E +GL P  +E  
Sbjct: 61  ADWNDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIFVFGSETRGLDPALRESF 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +    L M    ++LN+SN  AV +Y     
Sbjct: 121 APSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153


>gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 159

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+ +         L + + K           +   L+ G E +GL     ++     
Sbjct: 64  QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
 gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
          Length = 169

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R+ VA +C   +        +   + +S     E +     
Sbjct: 1   MIHVVLYEPEIPQNTGNIMRTCVAANCRLHLIEPLGFSLDEQKIRRSGMDYREKLQMSVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250
            +      +     F  +              + +K   L+ G E  G+      +    
Sbjct: 61  PDWAAFCAQNPDGEFYFLTRYGKQPPASFDYTRTEKDIYLVFGRESTGIPKAILRDHLDR 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A L M    ++LN+SN  A+ +Y      
Sbjct: 121 CARLPMVADARSLNLSNCVAICVYEVLRQL 150


>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum ATCC 27405]
 gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 1313]
          Length = 164

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A   +  +        E   L ++     + +    
Sbjct: 1   MAINVVLVEPEIPQNTGNIARTCAAVGANLHLVKPLGFSVEDRYLKRAGLDYWDKVNIKY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             + ++   K     F      +            D   ++ G E  GL  +   E    
Sbjct: 61  YDSFSELRDKYKEHIFYYSTTKAQKLYTD--VKYPDDCFIVFGKETAGLPEELLVENKEW 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN+ A+ +Y     
Sbjct: 119 CIRIPMRDDIRSLNLSNSVAIIVYEALRQ 147


>gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C]
 gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C]
          Length = 245

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 82/235 (34%), Gaps = 13/235 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-KTVPPQTIDK 103
           + + + L G H +  AL   +  +  +      +  L           V + V P  + +
Sbjct: 14  RDDVVLLDGFHALKHALRFGAEVLDVVADEPERVRELAAGLAPDVEAAVARLVRPGRLKE 73

Query: 104 IVGKEAVHQGLALETAPLLSP---TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++ +       AL   P        L  +     +++LD+  +  N+GA++R A  F   
Sbjct: 74  LLPRVHPTGVAALAVRPGREAGRAALARMPRHAPVVLLDNPRNLGNVGAVVRLAAGFGAT 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++T     P    V+   A                    ++       +       + +
Sbjct: 134 GVVTRGDLDPWHPNVVRAGAGLHYATTVDR---------LELEELPPGPVYALDPEGEDI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +  D   L  G+E  G+ P+ +  A  +  L M   + + N++ + A+ L+ 
Sbjct: 185 RALVLPDDALLAFGSERHGISPELRARADHLVSLPMRPQVSSYNLATSVAMTLFH 239


>gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 154

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P ++        L+ G+E  GL  + +      +
Sbjct: 59  RHRNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDEIRNGFAPEN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+  Y     
Sbjct: 119 RIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147


>gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 156

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    L+       +   L++    P            + G+E +GL  + +E    + 
Sbjct: 61  ADWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDWFVFGSETRGLSEERREWFPPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|313836588|gb|EFS74302.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314928098|gb|EFS91929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972098|gb|EFT16195.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
          Length = 99

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
               IA ++G E  GL    +  A  +  + M G +++LN+S AAAV LY T +   A
Sbjct: 42  LKRPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLYATASEQRA 99


>gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 166

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ + +        +   ++ G E  G+          +   + M G I++LN+SN+
Sbjct: 78  YYATTKAPQTYTDVHYEEDCYIMFGKESAGIPEDILVNNQETCVRIPMIGDIRSLNLSNS 137

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 138 VAIVLYEALRQ 148


>gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 159

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R   A   +  +        E+  L ++      ++      + 
Sbjct: 3   IVLFEPEIPPNTGNVARLCAATGTELHLIEPLGFKLENRYLKRAGLDYWPNVRLFTWPDW 62

Query: 196 TDALQKM----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
               Q+           T   S     P++      + +LI G E +GL P+  + +   
Sbjct: 63  RAFAQRPGRPATERWVMTSAKSRHGSAPVQHFAFQPEDSLIFGPETRGLPPEMLDASPHH 122

Query: 252 AHLHMP-GIIKALNVSNAAAVALY 274
             + M  G +++LN+S +A + LY
Sbjct: 123 VRIPMREGGVRSLNLSTSAGIVLY 146


>gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18]
 gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18]
          Length = 161

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    ++ G E KGL  +  E    +   + + G +++LN+S +A + LY     
Sbjct: 96  FHPGDFIVFGKETKGLPEELIEAHPETSVRIPIIGRVRSLNLSTSAGIVLYEALRQ 151


>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
           19424]
          Length = 156

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLDDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +   L++    P  Q         + G+E +GL P+ +E      
Sbjct: 61  DSWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDWFVFGSETRGLSPERREWFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +   A         +   L++            +   L+ G E +GL     +  +   
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQNGDYLMFGPETRGLPASILDALSKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPNSRSMNLSNAVSVVVYEAWRQL 148


>gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +   LI GAE  G+  +  E    +   + M G +++LN+S++ A+ +Y       K
Sbjct: 94  YQEGDYLIFGAEDYGIPREIIERYWENSVSIPMFGPVRSLNLSSSVAIVVYEALRQIKK 152


>gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 2043

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 2/175 (1%)

Query: 107  KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            ++ V      E    L P     +   +++V   + +P NI  + R    F+ + I+  +
Sbjct: 1859 QKKVSSWWTSEVYNELHPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVESIVVPE 1918

Query: 167  RYSPSESAVLA--KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +        +A  +SA   +                             + +  PLEQ  
Sbjct: 1919 KKVFEHPHFVAAARSAELWIPWEEVAPKDLPCYLEGLRRRGYVVVGIEQTAASVPLEQFS 1978

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++ A++LGAEG+G+             +   G+I++LNV  A A+ +Y     
Sbjct: 1979 FPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2033


>gi|4104449|gb|AAD02043.1| tRNA/rRNA methyltransferase [Brucella abortus]
          Length = 159

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G   + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWNRFDAWRKNAGRGLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN++ + A+          +K
Sbjct: 121 LLIPMVRSARSLNLAVSVAMTTGEALRQIRSK 152


>gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 157

 Score = 79.1 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTAAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 175

 Score = 78.7 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD+V   HN+G++LRS  AF  + +      +   SA + K+A GA + + +   
Sbjct: 16  PLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYF 75

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETAT 249
           +  TDA+ ++H+ G +   +   +   + Q +  +   + A++LG E KG++    +   
Sbjct: 76  AQTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEVGTRYAVVLGNEVKGVQQTVVDLCD 135

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +   G   +LNVS AA + ++       K
Sbjct: 136 GCLEIPQFGTKHSLNVSVAAGIVVWEFAKKIGK 168


>gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score = 78.7 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 5/161 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +   R   + ++ + V+DPHN  A+LR+A AF    +      +P +   L    + 
Sbjct: 38  MYDILQQRTRYVTVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHAD 97

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               +             +   +      L   + +  + ++ +   AL+ G E  G+  
Sbjct: 98  KWLTLRQQPDIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDV-SQPTALLFGNEHSGVSQ 156

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNH 279
           +    A +   + M G +++ N+S AAA+ALY      +  
Sbjct: 157 EAIRVADATFMIPMYGFVQSFNISVAAALALYDVTERARRQ 197


>gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299]
 gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299]
          Length = 234

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            PLE        A+ILG E  G+  + +  A    ++ M G  ++LNVS A+++ ++   
Sbjct: 130 HPLEHYDWTVPTAVILGNERDGVSDEAKRLADGGVYISMNGFTESLNVSVASSMIMHHAV 189

Query: 278 NHFAK 282
               +
Sbjct: 190 QDRTR 194


>gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 228

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 5/224 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   L   S KI Q+L  K    +           P+  V  +    +  +  
Sbjct: 2   VVYGKRVVEYILTKHSDKIQQVLLAKEIDKKQFRAFARL-NVPLVRVDSKKAQSLA-RGG 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG  LE APL+      ++    ++VL  ++D  NIGA+ R+A     DGI+      
Sbjct: 60  NHQGYLLEIAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVICGLKD 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +  VL  S+      +                          +  K      +   K 
Sbjct: 120 FKQEGVLRASSGA---MLDMPFCLVYNALDVANELKFAGFRLYGASLKGVESNGVTQGKK 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LGAEG GL  K  +       +       +LNVS A A+ +
Sbjct: 177 ALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAILI 220


>gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans
           CH34]
 gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +   L++    P  Q         + G+E +GL P+ +E   +  
Sbjct: 61  ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp.
           W3-18-1]
 gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens CN-32]
          Length = 154

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 458

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/335 (9%), Positives = 78/335 (23%), Gaps = 58/335 (17%)

Query: 6   KKKSEKIFSLKDSHY-AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           K   E     +      K+  N +    +    +  +   + E + L GV  +  A+   
Sbjct: 114 KAYEETRKRKESKTVLTKVHENEKIVSSIMMSLRSKKQRKKDELILLEGVRFIEDAIKAG 173

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-------- 116
               +   +    +  LD+       F V     Q    +     V              
Sbjct: 174 IVPQYIFFSRWEDIKHLDFSNTGTKLFKVTYRNIQLWSTLTTSPGVMGIFKRPEPLKVKK 233

Query: 117 --------------------------------------ETAPLLSPTLDAVRNSQLLMVL 138
                                                       +  L +   +   + +
Sbjct: 234 SSLPITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCVDFWDTKVLRSATGAHFRVPI 293

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL--- 195
                  +I + +                        +A+  + A               
Sbjct: 294 LGSQKWDDIKSSIDDDAQIYVADNNVDAHIKDFAEIEMAEEKTEADTETEDQEPEIQEPA 353

Query: 196 ----TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
                  +++  +        +         +   +++ LI+G E +GL  ++ E     
Sbjct: 354 KTKSQKIIKEDRNDCLLLRNSNLPVIPYYAVDYTQNQVILIVGGETEGLSRESYELIEKK 413

Query: 251 ---MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                ++ +   I +LN   A  +  +  +  F +
Sbjct: 414 QGIRVNIPLDNGIDSLNAGMALGIIAFEVKRQFLR 448


>gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 207

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
                  A I+G EG G+    +       ++   G    +LNVS AA++ ++   
Sbjct: 88  HPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQYGPGTASLNVSVAASIVMHHFA 143


>gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 171

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P N G I+R          +        +   L ++      H      
Sbjct: 5   FLHVILYEPEIPPNTGNIIRLCANTGATLHLVEPLGFAWDDRRLRRAGLDY--HEFAQVH 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A  +           S+   +           AL+ G E +GL      +  A  
Sbjct: 63  RHADWASCRAFLGDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHLLNSLPARQ 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  L M    ++LN+SNA AVA++     
Sbjct: 123 VLRLPMRSGQRSLNLSNACAVAVFEAWRQ 151


>gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC
           51908]
          Length = 154

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYNDLTRVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    LQ M               +   +     +  L+ G E +GL  +  E+   + 
Sbjct: 61  KDFESFLQAMEGKRIMACTTKG--SRHHTELSFEKEDVLLFGPETRGLPIEIIESLPTSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLKIPMTPNSRSLNLSNAVAIISYEAWRQI 148


>gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 151

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLATCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSDQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018]
 gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018]
          Length = 154

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I R   A +C   +         +    + A     +   +  
Sbjct: 1   MFNIVLLEPRIPGNVGTIGRLCFALNCKLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFE 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-M 251
               +     + +  +    ++ +K        N       G E  GL       ++   
Sbjct: 61  YENIEDFWSKNPFNDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHTC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N+ ++  Y     
Sbjct: 121 ITIPMTNDARSLNIANSVSIVAYEALRQ 148


>gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           halifaxensis HAW-EB4]
          Length = 153

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +       
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     ++     
Sbjct: 61  KNFEAFLEAMDGKRIMACTTKG--SRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148


>gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2]
 gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2]
          Length = 154

 Score = 78.7 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +  +  A + G E +GL     E+        + M    ++LN++NA +V  Y  
Sbjct: 85  YYTEPVFENGDAFLFGPETRGLPKDVIESVPEDQRLTIPMIPGGRSLNLANAVSVMAYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRQL 148


>gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii
           yoelii]
          Length = 227

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 1/155 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  +    +++ +++ ++    NIG I+RS VAF+   I    R     S   +  
Sbjct: 5   NNFEDDKERDGKTKMYVIIYNIGKKKNIGNIVRSCVAFNVSEIFVVGRNKKETSFFGSMG 64

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G +    +  +  L + L   +   +     +       +  +KN   A + G EG G
Sbjct: 65  THGYIRIRYFSNMIELKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTG 124

Query: 240 LRPKTQETATSMAHLHMPGI-IKALNVSNAAAVAL 273
           +  +  +    + ++   G  I +LNVS + A+ L
Sbjct: 125 ISDQIIKMCDKIIYIPQYGNGIASLNVSVSCAIIL 159


>gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 153

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +        + A L ++      +     +
Sbjct: 1   MLHVIFWEPEIPGNTGAAIRLSACTGSMLHLIKPLGFDMDDAKLRRAGLD---YHDLAHV 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +   +  + +     +    +  +     +    D   L+ G E  GL  +         
Sbjct: 58  TVHENLDEALDQVPGRVWAFTGHAHTMHSEVAYADGDGLLFGRESVGLSSEAMAHRRVED 117

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +HM   +++LN++N+A++ALY      
Sbjct: 118 LVRIHMVKGVRSLNLANSASIALYEAWRQL 147


>gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180]
 gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180]
          Length = 158

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                A + G E +GL     E+ +      + M    ++LN+SNA AV LY     
Sbjct: 91  FQPGDAFLFGPETRGLPESVLESVSEEHRLQIPMRPGNRSLNLSNAVAVVLYEAWRR 147


>gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 167

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R       +  +       ++   L ++       +     
Sbjct: 4   PLHIVLIEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDDKHLKRAGLDYWPLVKVHYH 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            N  +  ++     F  +   +                L+ G E  G+     +      
Sbjct: 64  DNFAEVQERYAGHNFYYLSTKAPRSYTE--VHYTMDDMLVFGKESAGIPEPILKANWEHC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SN+ AV  Y     
Sbjct: 122 VRIPMIPEARSLNLSNSVAVVAYEAMRQ 149


>gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 153

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R+  A      +         +  L ++       +     
Sbjct: 1   MVHVVLVEPEIPQNTGNIARTCAATGSVLHLVHPLGFSVSNRYLKRAGLDYWHLVEVHHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            +  +  ++     F          +        D   L+ G E  GL  +  E  A   
Sbjct: 61  PSFDEVCRRYPDRPFFFATARR--GRRYTDARYPDGSFLVFGKETTGLPAELLEANAEQC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L      ++LN+SNA AV +Y     
Sbjct: 119 VRLPQREPARSLNLSNAVAVLVYEALRQ 146


>gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 156

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I+R +    C+  +        +   L ++     EH      
Sbjct: 1   MFNIVLVSPEMPANVGNIIRLSANTGCNLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           + L +AL  + +   +   +S+  KK L           I G E  GL+           
Sbjct: 61  NTLEEALNTIGTDRNRCFAISTKGKKHLSDINFQKGDVFIFGRESAGLKDYEWSIIGIDQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ +Y      
Sbjct: 121 AVRIPMKANSRSLNISNAVAITVYEAWRQI 150


>gi|170744270|ref|YP_001772925.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168198544|gb|ACA20491.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 163

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR A        I            L +S    L+H+   R 
Sbjct: 1   MLRLALYQPDIPQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +  +          + +  ++    P  +        L++G E  G+       A +  
Sbjct: 61  RSFAEFEAWRRRASLRLVLATTAGALPYTEFAYRPDDCLLVGRESAGVPDSVHAAAEARV 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   +++LNV+ AAA+ L      
Sbjct: 121 VIPLRPGLRSLNVAVAAAMILGEALRQ 147


>gi|313763452|gb|EFS34816.1| conserved domain protein [Propionibacterium acnes HL013PA1]
 gi|313773427|gb|EFS39393.1| conserved domain protein [Propionibacterium acnes HL074PA1]
 gi|313793838|gb|EFS41867.1| conserved domain protein [Propionibacterium acnes HL110PA1]
 gi|313801228|gb|EFS42486.1| conserved domain protein [Propionibacterium acnes HL110PA2]
 gi|313811442|gb|EFS49156.1| conserved domain protein [Propionibacterium acnes HL083PA1]
 gi|313816634|gb|EFS54348.1| conserved domain protein [Propionibacterium acnes HL059PA1]
 gi|313822264|gb|EFS59978.1| conserved domain protein [Propionibacterium acnes HL036PA1]
 gi|313831181|gb|EFS68895.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834842|gb|EFS72556.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314914611|gb|EFS78442.1| conserved domain protein [Propionibacterium acnes HL005PA4]
 gi|314920660|gb|EFS84491.1| conserved domain protein [Propionibacterium acnes HL050PA3]
 gi|314924560|gb|EFS88391.1| conserved domain protein [Propionibacterium acnes HL036PA3]
 gi|314930430|gb|EFS94261.1| conserved domain protein [Propionibacterium acnes HL067PA1]
 gi|314957364|gb|EFT01467.1| conserved domain protein [Propionibacterium acnes HL002PA1]
 gi|314966004|gb|EFT10103.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314968370|gb|EFT12469.1| conserved domain protein [Propionibacterium acnes HL037PA1]
 gi|314974060|gb|EFT18156.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314978785|gb|EFT22879.1| conserved domain protein [Propionibacterium acnes HL072PA2]
 gi|314981817|gb|EFT25910.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315081118|gb|EFT53094.1| conserved domain protein [Propionibacterium acnes HL078PA1]
 gi|315083439|gb|EFT55415.1| conserved domain protein [Propionibacterium acnes HL027PA2]
 gi|315087006|gb|EFT58982.1| conserved domain protein [Propionibacterium acnes HL002PA3]
 gi|315089181|gb|EFT61157.1| conserved domain protein [Propionibacterium acnes HL072PA1]
 gi|315090685|gb|EFT62661.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094896|gb|EFT66872.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|315095235|gb|EFT67211.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|315099080|gb|EFT71056.1| conserved domain protein [Propionibacterium acnes HL059PA2]
 gi|315104168|gb|EFT76144.1| conserved domain protein [Propionibacterium acnes HL050PA2]
 gi|315106687|gb|EFT78663.1| conserved domain protein [Propionibacterium acnes HL030PA1]
 gi|315108913|gb|EFT80889.1| conserved domain protein [Propionibacterium acnes HL030PA2]
 gi|327329570|gb|EGE71329.1| rRNA methyltransferase [Propionibacterium acnes HL096PA3]
 gi|327333955|gb|EGE75671.1| rRNA methyltransferase [Propionibacterium acnes HL097PA1]
 gi|327444570|gb|EGE91224.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|327446242|gb|EGE92896.1| conserved domain protein [Propionibacterium acnes HL013PA2]
 gi|328752004|gb|EGF65620.1| conserved domain protein [Propionibacterium acnes HL020PA1]
 gi|328757793|gb|EGF71409.1| conserved domain protein [Propionibacterium acnes HL025PA2]
          Length = 79

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFA 281
                IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +   A
Sbjct: 21  CLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATASEQRA 79


>gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
 gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
          Length = 166

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ ++K        D   ++ G E  G+  +   +   +   + M   I++LN+ N+
Sbjct: 76  YMATTKARKKYTDVRFEDDAYIMFGKESAGIPEEILVDYKDTAIRIPMFPDIRSLNLGNS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIVLYEALRQ 146


>gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 221

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 1/170 (0%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G   +        + A R     + ++ +   HN  A++R+   F        ++     
Sbjct: 13  GFITQERKERFSQILAQRTQYFTVAIEDIFQMHNTSAVVRTCEVFGVQTTHIIEKKYGKR 72

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
                   +     I     +       K+  +      + + S  PLE    + K A  
Sbjct: 73  LDSKIAMGAEKWVTIKRYSNTQSCIEELKLQGYRIV-ATVPAPSAIPLEHFNIDAKSAFF 131

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            G E  GL  +    A     + M G  ++LN+S + A+ L    N   K
Sbjct: 132 FGTERDGLSQEVISQADEFLTIPMVGFTESLNISVSVAIILQYLTNKLRK 181


>gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
 gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
          Length = 161

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   +      +        E   L ++      H+      + 
Sbjct: 3   IVLFEPEIPPNTGNIARLCASTGIHLNLIEPLGFKLEDRYLKRAGLDYWPHVRMDVWPDW 62

Query: 196 TDA----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                    +      + +  S+   +PL+         L+ G E +GL P+  + +   
Sbjct: 63  DSWLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPPEILKRSPYK 122

Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQ 277
             + M    ++++N+S AA + L+   
Sbjct: 123 VRIPMLKDSVRSINLSTAAGIVLFTAM 149


>gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1]
 gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1]
          Length = 230

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++D VN PHN+ AI+R+  A              + ++    +          
Sbjct: 18  RQPTLTVLMDEVNKPHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGSAHK 77

Query: 190 IRISNLTDA-----LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +          +             S       +        ++LGAE  G+  + 
Sbjct: 78  WVKVHPHADAVSAVRELQAQGFQVLATHLSQRSVDYREPDYTKPTCVLLGAEKWGVSDEA 137

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E A +   + M G++++LNVS AAA  L+  Q   
Sbjct: 138 AEAADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 173


>gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
          Length = 169

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY   N   K
Sbjct: 109 SDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRK 165


>gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1735

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 2/180 (1%)

Query: 102  DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            D+ + ++       L    L    L   +   L+++   + +P N+  + R    F+ + 
Sbjct: 1550 DENIQRKVTPWWNGLVYNELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTVEK 1609

Query: 162  IITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            ++ + +  ++       A+SA   +     +  +                    +     
Sbjct: 1610 VVVSDQAVFAHPHFVAAARSAELWMPWEAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVS 1669

Query: 220  LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      ++ A++LGAEG G+  +          +   G+I++LNV    A+ +Y     
Sbjct: 1670 MASYRFPERAAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 1729


>gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
 gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
          Length = 157

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 54/152 (35%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +     +++L+     +         +  +   +I    +   +  +         +   
Sbjct: 1   MVYKMNIVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIKRAGLDYWKDVQL 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247
           ++  +      + + +   +    ++ +K+       ND   ++ G E +G+  +   + 
Sbjct: 61  FVWENWEHFWQENIENSNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNKY 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             S   + M  + ++LN+SNA A+ L+     
Sbjct: 121 KESNITIPMLPLGRSLNLSNAVAIVLFEALRQ 152


>gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
 gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS223]
 gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
          Length = 154

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
 gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
          Length = 154

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +      +    G +   L++   +            L+ G E +GL    
Sbjct: 51  YHDMASVHVHADWTAVQEALAGRRWFALTTRGSRSYASVAFEAGDVLLFGPESRGLPADL 110

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      L M    ++LN+SNA +V ++     
Sbjct: 111 LAHFDVDQRLRLPMLPGSRSLNLSNAVSVVVFEAWRQ 147


>gi|75761063|ref|ZP_00741062.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491447|gb|EAO54664.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 69

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ALI+G EG G+R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 13  GSFALIVGNEGNGVRQEILTKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 63


>gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 241

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   + + ++ + D  N+ A+ RSA A     +      +        K + G  + + 
Sbjct: 48  NRTYSICIAVEGLLDLGNVSAVCRSADALGFQSVHVISNETKKRYKKNRKVSMGTEKWLD 107

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET 247
               SN +D +  +   G++              ++      A+  G E  G   +  + 
Sbjct: 108 AELWSNTSDCIDTLRQRGYRIAVTHIAPDTVSIYDMDWTIPTAVFFGNEFMGASEEAIKQ 167

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + M G++++ N+S AA + ++       
Sbjct: 168 SDVRCCIPMAGMVESFNISVAAGIIMHHAARDRI 201


>gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1]
          Length = 165

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ ++K        D   ++ G E  G+  +   +   +   + M   I++LN+ N+
Sbjct: 76  YMATTKARKKYTDVKFEDDAYIMFGKESAGIPEEILVDYKDTSIRIPMFPDIRSLNLGNS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIVLYEALRQ 146


>gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 213

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           K+A+  G E  G+     E +     + M G+I++LN+   + + LY       +
Sbjct: 134 KLAVWFGNESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQRRE 188


>gi|299134646|ref|ZP_07027838.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
 gi|298590456|gb|EFI50659.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
          Length = 158

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR     + +  I      P       ++    L+ +   R  + 
Sbjct: 3   IALYQPDIPQNTGTILRLCACLAVEAHIIEPAGFPVSDRHFRRAGMDYLDQVSISRHVSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T       + G + + L++            D   L+LG E  G+  +   +A     + 
Sbjct: 63  TAFRAWQQADGGRLLLLTTKGATSYLAHRYEDTDILLLGRESAGVPDEVAASADERLVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LNV+  AA+AL      
Sbjct: 123 IAEGMRSLNVAVTAAMALGEALRQ 146


>gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 220

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     + ++ +   HN  A++R+   F        +              +       
Sbjct: 30  QRTEHFTVAIEDLFQVHNTSAVVRTCEVFGVQTAHIIEEKYGKRLDSKIAMGAEKWVTTI 89

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +       +   +          +    E +I   K A   G E  GL  +    A
Sbjct: 90  RYPHTQPCIEALRGQGYRIVATVPPPGATPLQEFDI-TPKSAFFFGTERDGLSQEVISQA 148

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S + A+ L
Sbjct: 149 DECLTIPMVGFTESLNISVSVAIIL 173


>gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 157

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFKLHLIEPLGFTWDDKRLRRAGLDY--HEFATLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++                L+ G E +GL     +   A  
Sbjct: 59  KHHDYQAFLDSEQPERLFALTTKGTPAHSAVSYQAGDYLVFGPETRGLPAYILDALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148


>gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS195]
 gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS678]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMAGKRIMACTTKG--SRPHTELTFAKDDVLLFGPETRGLPMAIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS185]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMAGKRIMACTTKG--SRPHTELTFAKDDVLLFGPETRGLPMSIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116]
          Length = 159

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R       +  +        E   + ++     +     R  + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+ +         L + + K           +   L+ G E +GL     ++     
Sbjct: 64  QAFLEYLEKEKQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 153

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L + L+       +    ++    P  +       A + G E +GL  +  ++  A  
Sbjct: 61  QSLAECLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 134

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 37/91 (40%)

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  +            +   ++         ++ K+A+  G E +G+  +  E + + 
Sbjct: 15  CFDHLEKNNVHSIVTSPHMKGQNNVWLHEGDFTEHTKLAVWFGNEKRGISDRAVERSEAC 74

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M G+I++LN++ ++ + LY       +
Sbjct: 75  VAIPMFGMIESLNLATSSGIVLYEVTKQRRE 105


>gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei
           VT8]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        E   + ++     E+      
Sbjct: 1   MLHVVLYEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSLEDKQMRRAGLDYSEYATVKIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +    L          +       +   +    D   L+ G E +GL    +    A  
Sbjct: 61  PDYDSFLATEQPSRLFGLTTKG--SRHYHEVAFRDGDYLMFGPETRGLPEDVRNGLPAEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN AA+ +Y      
Sbjct: 119 RLRVPMRPESRSLNLSNTAALVVYEAWRQL 148


>gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150]
 gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150]
          Length = 148

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MFHIVLYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFSLQEKALRRAGLDY--HEWACIS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                    +     Q    S+ ++K   +     +   + G E  GL  +  +  TS+ 
Sbjct: 59  QYENWDTFILQHQQKQIYACSASAEKCYSKVQYASEDMFLFGPESNGLPKEIVQKFTSLF 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M    ++LN+SNA AV LY      
Sbjct: 119 -IPMREHNRSLNLSNAVAVILYEAWRQL 145


>gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
 gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
          Length = 238

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K AL+LG E  G+ P+    A     + M G +++ N+S A A+ LY      
Sbjct: 134 HEIDFSGKTALVLGNERDGVTPEMIAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDR 193

Query: 281 AK 282
            K
Sbjct: 194 LK 195


>gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 287

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  + H+ +
Sbjct: 121 RGPVALVFGRESNGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLR 177


>gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 2045

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    ++ A++LGAEG+G+             +   G+I++LNV  A A+ +Y     
Sbjct: 1978 QFSFPERCAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQ 2035


>gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI]
 gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI]
          Length = 152

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E KGL P+  +        + M    ++LN++NA AV LY     
Sbjct: 90  YEPGSCLVFGKETKGLPPEILDGYPDGQIRVPMIDGARSLNLANAVAVVLYEALRQ 145


>gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CMR15]
          Length = 156

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    L+       +   L++    P            + G+E +GL  + +     + 
Sbjct: 61  ASWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGFPPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 220

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +              +       +
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQ-KWVDVF 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +                       L     + K A   G E +GL  +    A 
Sbjct: 87  RYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
           +   + M G  ++LN+S A A+ L
Sbjct: 147 TYLKIPMVGFTESLNISVAVAIVL 170


>gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268]
 gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268]
          Length = 170

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ + K   +   +    ++ G E  G+  +   +       + M    ++LN+SN+
Sbjct: 81  WYATTKAHKTHTEVSFSPNDYIVFGKESAGIPEEILVDNEEQCIRIPMLEEARSLNLSNS 140

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 141 VAIILYEALRQ 151


>gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri]
 gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri
           A1501]
 gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERH 60

Query: 193 SNLTDALQKM-----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           ++L   L ++     +  G +    ++   +P  +       AL+ G E +GL P  ++ 
Sbjct: 61  ADLPSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPDIRDA 120

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L M    ++LN+SN  A+A+Y     
Sbjct: 121 LPNEQRLRLPMRPDSRSLNLSNTVAIAVYEAWRQ 154


>gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 151

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFAPGDAFLFGPESRGLPADILDSLSSDQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 220

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +              +       +
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRIDAKIAMGAQ-KWVDVF 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +                       L     + K A   G E +GL  +    A 
Sbjct: 87  RYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSQQVLSQAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
           +   + M G  ++LN+S A A+ L
Sbjct: 147 TYLKIPMVGFTESLNISVAVAIVL 170


>gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I R   A +C   +         +    + A     +   +  
Sbjct: 1   MFNIVLLEPRIPGNVGTIGRLCFALNCKLHLIKPYGFGEITEKEVRRAGLDYWYDLEVFE 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-M 251
               +     + +  +    ++ +K        N       G E  GL       ++   
Sbjct: 61  YENIEDFWSKNPFNDRHFLATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHTC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N+ ++  Y     
Sbjct: 121 ITIPMTNEARSLNIANSVSIVAYEALRQ 148


>gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
 gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
          Length = 153

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        +  +L ++     E+    R 
Sbjct: 1   MFHIVLVQPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           +     L+       +   L++   + +          L+ G+E  GL P  +E      
Sbjct: 61  AGWQALLEAERPAAERMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVREGFAEPQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149


>gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 182

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               ++++L ++    N+G++ R+A     + I+ +   +      ++K+A GA   +P+
Sbjct: 26  DRHPVVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGADLSMPW 85

Query: 190 IRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I +   A+ +M +       + ++  S+      + +  + L+LG E +G+       
Sbjct: 86  EYIPDPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVVDFPLCLVLGNEVQGIDDSLLRL 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +  +   G   +LNVS AA VAL+    
Sbjct: 146 SDGVLEIPQYGTKHSLNVSVAAGVALFELVR 176


>gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
 gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R A        +        +SA   ++     E       
Sbjct: 1   MLHIVLYEPEIPPNTGNIIRLAANTGAALHLIHPLGFELDSARARRAGLDYHELARVQEY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L    + +       +     ++            AL+ G E +GL     +      
Sbjct: 61  DSLERWRESIRPQREFALTTRGQARYDQ--AGFQSGDALLFGPETRGLPQAVLDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SNA AV +Y      
Sbjct: 119 RLRLPMQPDSRSLNLSNAVAVVVYEAWRQL 148


>gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 269

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 90/239 (37%), Gaps = 5/239 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y+ + + +++         +   GV  V   L++P   +  LL     LA L  D +   
Sbjct: 18  YRDLTTADRRPDRPGGRGLVIAEGVVVVRRLLDSPY-PVRSLLGVPRRLAELADDLH-GT 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P  +    T+ + VG       LA+          + +  ++ + V + V D  N+G+
Sbjct: 76  DVPAFSTDADTMAQAVGFHLNRGVLAVADRAPAPDPAELLAGARTVAVCEGVGDHENLGS 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A A   DGI+     S        + + G +  +P+ R+     A   +      T
Sbjct: 136 LFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLDGEWPASLDVLREAGFT 195

Query: 210 IGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +   +                ++A +LGAEG GL  +    A     + M   + +LNV
Sbjct: 196 VAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGVDSLNV 254


>gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 158

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L  V      P N G  +R A        +        + A L ++     +    +  
Sbjct: 1   MLDFVFHEPKIPGNTGNAIRLAACTGARLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            N   A +             S ++     E   D   L+ G E  GL  +       T 
Sbjct: 61  PNWEAAKEYFGDDRRVFAFT-SHTENNYADEQYQDGDILLFGTEPTGLPDEVLNDPYLTK 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+A++ +Y      
Sbjct: 120 HLRIPMLPGRRSLNLANSASIVVYEAWRQL 149


>gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
 gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
          Length = 165

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R       +  +       ++   L ++       +      
Sbjct: 1   MHIVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           +     Q+ +   F      +                L+ G E  GL      +   +  
Sbjct: 61  SFAALHQQYYEHTFYFCSTKAHHSYCD--ISYKTDDFLVFGKESAGLPESLLTDYEANTI 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA AV  +     
Sbjct: 119 RIPMREEARSLNLSNAVAVVAFEALRQ 145


>gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162]
          Length = 166

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  D   ++ G E  G+  +   E   +   + M   I++LN+SN+ A+ LY    
Sbjct: 88  YTDVQYEDDCYIMFGKESAGIPEEILMEHKENCVRIPMINDIRSLNLSNSVAIVLYEALR 147

Query: 279 H 279
            
Sbjct: 148 Q 148


>gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 167

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS--------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L      G Q+ G +        +                L+ G E +GL P  
Sbjct: 61  HDYQAFLDSEKLDGAQSTGANAARLFALTTKGTPAHSAVEYQLNDYLLFGPETRGLPPNV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E   A     + M    +++N+SNA +V +Y      
Sbjct: 121 LEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158


>gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana
           ATCC 700345]
          Length = 153

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +       
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     ++     
Sbjct: 61  KNFEAFLEAMAGKRIMACTTKG--SRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMMSTSRSLNLSNAVAIISYEAWRQL 148


>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 156

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R       D  +       ++   L ++       +      
Sbjct: 5   LNIVLVEPEIPPNTGNIARLCAVVGADLHLVKPLGFKTDDKSLKRAGLDYWHRLKMTIYE 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           +  D   +               K    +    +   LI G E KGL P+        + 
Sbjct: 65  DFDDFEARNPGGKRYLATTKG--KIIYSETTFEEGCYLIFGRETKGLSPEILARYPEHLI 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA A+  Y     
Sbjct: 123 RLPMKNECRSLNLSNAVAIVTYEVFRQ 149


>gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus
           EPS]
 gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           EPS]
          Length = 153

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G ++R A    C   +        +  +L ++     E+    R 
Sbjct: 1   MFHIVLVHPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    +    +   +   L++   + +          L+ G+E  GL P  ++      
Sbjct: 61  ADWQALIDAESAAADRMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVRDGFAEPQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149


>gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1716

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+       +  ++LGAEG G+  +          +   G+I++LNV    ++ +Y    
Sbjct: 1646 PMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTR 1705

Query: 279  H 279
             
Sbjct: 1706 Q 1706


>gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
 gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
          Length = 159

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E+  L ++      H       + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGVRLHLVEPLGFSMETKALRRAGLDY--HEFAEVTVHS 61

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
             A  +    G +   +++                L+ G E +GL P       A S   
Sbjct: 62  DWAALRSVLDGRRLFAMTTKGSTSFYAARFEAGDVLVFGPETRGLPPHILAEFDADSRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  A+A+Y      
Sbjct: 122 LPMKPDSRSLNLSNTVAIAVYEVWRQL 148


>gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 152

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIKRSGLDYWHSVQLTVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            + L    +         +  +             ++ G E +G+  +  +        +
Sbjct: 63  EEFLASDPNMRLFYATTKTKQRYSD--VSYKANDYIMFGPESRGIPEEILKKNPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M  + ++LN+SN+AA+ LY     
Sbjct: 121 PMIPMGRSLNLSNSAAIILYEALRQ 145


>gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
 gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MFNVILYQPEIPPNTGNIIRLCANTGASLHLVKPLGFTLEDKQLLRAGLDY--HEFASIT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
              +         G +   +S+  ++  +     +  A + G E +GL  +   + +   
Sbjct: 59  VYESWDECVARFTGARLFAVSTKGRQRYDLVRYTEGDAFVFGPESRGLPAEILGSVSEQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ AV LY     
Sbjct: 119 CLRVPMVPGSRSLNLSNSVAVVLYEAWRQ 147


>gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +   A       G +    ++ +              L+ G E +GL  + 
Sbjct: 51  YHDLAHVHRHKDFAAFMEAMQGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110

Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + M    ++LN+SNA A+  +     
Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147


>gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 166

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++ + K        +   ++ G E  G+ 
Sbjct: 50  GMDYWKDLDVTTYINYQDFLDRNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIP 109

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   E   +   + M G I++LN+SN+ A+ LY     
Sbjct: 110 EEILLENQETAIRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. WH 8102]
          Length = 166

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  AF     +        +   + ++      H+     S
Sbjct: 10  LRVVLYEPQIPPNTGNIARTCAAFRLPLALIEPLGFCIDDRAVRRAGLDYWPHVQLSIHS 69

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL D L        + IG S      L +        L+ G E  GL    ++    +  
Sbjct: 70  NL-DHLLGQLPHPHRLIGCSRHGGDSLGEFQFQHGDVLLFGREDNGLPGHVRDQCDRILT 128

Query: 254 LHMPGIIK--------ALNVSNAAAVALYITQNHF 280
           + MPG +         +LN+S A A+  Y   +  
Sbjct: 129 IPMPGGVDADGQGGVRSLNLSVACALVSYTAGHQL 163


>gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 168

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181
              A     L++VLD V   +N+G++ RS  AF  + +            E    A    
Sbjct: 8   DFKAADKLPLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGE 67

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            +++   +   +   + L++     +    +   +K       ++ + A++ G E KG+ 
Sbjct: 68  DSVDWRYFASATQAVEDLRERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGVH 127

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             T +       +   G   +LNVS  A + ++      
Sbjct: 128 QDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQKL 166


>gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1716

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            P+       +  ++LGAEG G+  +          +   G+I++LNV    ++ +Y    
Sbjct: 1646 PMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTR 1705

Query: 279  H 279
             
Sbjct: 1706 Q 1706


>gi|82915128|ref|XP_728972.1| rRNA methylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485711|gb|EAA20537.1| rRNA methylase [Plasmodium yoelii yoelii]
          Length = 361

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 113/338 (33%), Gaps = 65/338 (19%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-------------TSQPENLFLYGV 54
           K++   S  +     + RN + YK +  +N + ++              ++ +  ++YG+
Sbjct: 23  KNDHNISRTNLDRVSIPRNKKKYKLLNLYNDRKKNILXNIKRNSFLDIQNKNDIDYIYGL 82

Query: 55  HTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++V + L    RKI + +  KNA               +        +       +D++V
Sbjct: 83  NSVYSVLKKNERKIDKAIINKNAKRNKKIHKEAYDYILNTIKEKNIQIVYKTKNEMDELV 142

Query: 106 G-----------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           G                +          +   +   N+ + + L +V D  N+G I RS 
Sbjct: 143 GGFPHNDIIIEATYRYMKNYRHFINNKKTTNNNNNNNNNIFICLHNVYDNMNVGNICRSI 202

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW--------- 205
           + F  D I   ++    E     K  +  L              +  M ++         
Sbjct: 203 LFFGGDSIFLKRKKKKGEHKNYIKIDTPILHSSVGASEYLNFFHVNNMENFISSLKEKGF 262

Query: 206 -------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---- 254
                        +++  +    +  KN+K+ +ILG E KGL     + +    ++    
Sbjct: 263 TILSTSSPKNNTRMTNFVELKNMKINKNEKVMIILGNESKGLSEDIIKNSDICIYINNLY 322

Query: 255 ------HMPGI------IKALNVSNAAAVALYITQNHF 280
                            + +LNV+N  ++ L+  Q++ 
Sbjct: 323 DEKNIQPNLKNINDNLIVNSLNVNNVCSIILHHFQSNI 360


>gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum]
          Length = 1259

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + K  L+LG E +G+ P           +   G++++LNV  A A+ ++     
Sbjct: 1200 FRFDKKTVLVLGNEKEGIPPDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIWEYCKQ 1256


>gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
 gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
          Length = 155

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R      C   +        +   L ++             
Sbjct: 1   MFNVVLYQPEIPPNTGNIIRLCANTGCQLHLVKPLGFVLDDKRLRRAGLDYS--EWQNLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +      +  +       LS+       +   +    L+ G E +GL    +E+     
Sbjct: 59  IHENWQSLRDAAGTATIWALSTKGTATHSEARFSAGDYLVFGPETRGLPADIRESLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M    +++N+SNAAAV +Y      
Sbjct: 119 VLRIPMQAQSRSMNLSNAAAVMVYEAWRQL 148


>gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
 gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
          Length = 157

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A     +   +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHADYAAFVASAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 103

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             IAL+LG E  GL P T      +  L   G +++LNV+  AA+ ++    
Sbjct: 49  KPIALLLGNEEDGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100


>gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 161

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +   K     +      +                L+ G E +GL     E    +   +
Sbjct: 63  EELYAKYPDRRYFYATTKAKHVHSD--VKFEIGDMLVFGPETRGLPESLLEGNEETCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SN+ A+  Y      
Sbjct: 121 PMVEEARSLNLSNSVAIIAYEAMRQL 146


>gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++      P N G  +R      C+  +        + +      +G   H      
Sbjct: 1   MFRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLATVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250
            +   A         +    ++ +              L+ G E  GL  +    E  T 
Sbjct: 59  VHENLAAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHITE 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNAAA+  Y     
Sbjct: 119 RLRIPMLPGRRSLNLSNAAALVTYEAWRQ 147


>gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 156

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H   + +    +   K ++        ++ + KP  +   +D   +  G+E  G+  +
Sbjct: 51  YWHKLDLHVWESLEDFFKNNNIINNAHFATTKTDKPYFEANFSDGDYIFFGSETAGIPEE 110

Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +       + M    ++LN++ +  + LY     
Sbjct: 111 ILTKYKEQNITIPMTKEGRSLNLAISTGIVLYEAIRQ 147


>gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
 gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
          Length = 156

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+         +            LA++     + +  +R  
Sbjct: 5   LSIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWP 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
                 +   +         +            +   L+ G E +GL     E  A+   
Sbjct: 65  CTEAFFEAHAADELHLFTGQARRGFGD--VAYGEGSFLVFGRESRGLPLGLIEAHASRCV 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   +++LN+SNA AVA Y     
Sbjct: 123 RIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
 gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
          Length = 165

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++ + K   +        ++ G E  G+ 
Sbjct: 48  GMDYWSDLDVTTYIDFNDFMEKNPGAKIYMATTKAPKVYTEVHYEPDCFIMFGKESAGIP 107

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   E   +   + M G I++LN+ N+ A+ LY     
Sbjct: 108 EEILVEHKENCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
 gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
          Length = 154

 Score = 78.3 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +   A       G +    ++ +              L+ G E +GL  + 
Sbjct: 51  YHDLAHVHRHKDFAAFMQAMEGRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEF 110

Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + M    ++LN+SNA A+  +     
Sbjct: 111 IASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147


>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 170

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    +      K    G +    ++ +K         +   L+ G E KGL  + 
Sbjct: 50  YWKFLDIHIHKNFESVKQMLKGKRFFYNTTKAKHVYTDISYKEDDVLVFGKETKGLPEEL 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E   S   + M    ++LN+SNA A+        
Sbjct: 110 LLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQ 145


>gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 272

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
                 G   +  A          LL+ K     +  D     P PV  V P   +++ G
Sbjct: 35  GLFIAEGEKVIRRARQTGYEMRSMLLSAK--WIDVMRDVIDEVPAPVFAVDPALAERVTG 92

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA      L    + +  ++ ++V++ VND  NIGAI RSA A   D ++ + 
Sbjct: 93  YHVHRGALASMQRKPLPDAAELLGTARRVVVMESVNDHTNIGAIFRSAAALGMDAVLLSP 152

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +        K + GA+  +PY R+      L+ +   GF+ + L+ D K     E   
Sbjct: 153 DCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGFRLLALTPDEKATSIDEAAP 212

Query: 227 DK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +   +AL+LGAEG GL  K    A     + M   + +LN
Sbjct: 213 HRLERVALMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253


>gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 189

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%)

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  +    +       I    +         K  K+A+  G EG G+     + ++  
Sbjct: 98  CMDHLEKESFVSVITSPHIKGYKNVVLHKHDYTKYKKLAVWFGNEGVGISKTAVKRSSFC 157

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            ++ M GII++LN+  ++ + LY       K
Sbjct: 158 INIPMYGIIESLNLGTSSGIVLYEIAKQRHK 188


>gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
           DS-1]
 gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
           DS-1]
          Length = 175

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                         L++G E  G+  +  + A +   + M    ++LN++ AA++ L   
Sbjct: 101 HNNFMDFTFRPGDTLLIGRESAGVPAEVHDAADARVTIPMRPPARSLNMAVAASMVLTEA 160

Query: 277 QNH 279
              
Sbjct: 161 LRQ 163


>gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 154

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFDWDDKRVRRAGLDY--HEFAHVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +       +   +    ++  K            ALI G E +GL     ++     
Sbjct: 59  RHASLDAYLEDAKPNRVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +   F
Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQF 148


>gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032]
 gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter
           turicensis z3032]
          Length = 157

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVM 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHRDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1]
 gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 153

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   L+       +    ++    P  +       A + G E +GL  +  ++  A  
Sbjct: 61  ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSLPAEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
 gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
          Length = 159

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNL 63

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
               + L+      ++    ++ +              L+ G E +GL  +  E+     
Sbjct: 64  EAFIEYLENEREGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 156

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     E +    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +  +   +        +    +    +     I G E  GL    +E    +
Sbjct: 61  HDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 TLRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR          I      P       ++    L+ +   R  + 
Sbjct: 3   IALFQPDIPQNTGTILRLCACLGLAAHIIEPAGFPVSDRHFRRAGMDYLDQVSITRHVSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +   + G + +  ++ +              L+ G E  G+     E A +   + 
Sbjct: 63  PQFEEWRAAQGCRLLLFTTKAATDYRDFRYQTSDILLFGRESAGVTDAVVEAADARLVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           +   +++LNV+  AA+A        
Sbjct: 123 IAPGLRSLNVAMTAAMAAGEALRQI 147


>gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 157

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +  ++     F  I           +    ++    + G E  GL     +    
Sbjct: 61  HDSLEELFEEYQKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 148

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V    + P N+GA +R A  F  +  I      P     + ++A      I  +R ++ 
Sbjct: 3   IVFFQPDIPQNLGAAMRVAACFGAELDIIEPCAFPLTDKGIRRAAMDYQAAISPLRHASW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   +   + +  ++     L          L+ G E  G+     + AT    + 
Sbjct: 63  KAYQASAEASAGRLVLFTTRGAGKLWDFSFRPDDRLLFGRESAGVPDDVHDAATCRVKIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           +   +++LNV+ +A +AL       
Sbjct: 123 IREGMRSLNVTVSAGIALAEASRQL 147


>gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis
           Et1/99]
 gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis
           Et1/99]
          Length = 157

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFAAIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + +           +   L++                L+ G E +GL  +  +   A  
Sbjct: 59  HHASYEAFAASETPRRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLDALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 217

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 53/152 (34%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN  AILRS  A            +       A S S       
Sbjct: 15  QRQPTLTVLMEEVNKPHNFSAILRSCDAVGVWEAHAVPPKNGKLPTYNATSGSAEKWVRV 74

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +   +             S       +        ++LGAE  G+  +  + A
Sbjct: 75  QSHADAPSAVRELQGRGFQVLATHLSARSVDYRELDYTRPTCVLLGAEKWGVSEEAADAA 134

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + M G++++LNVS A A  L+  Q   
Sbjct: 135 DANVVIPMLGMVQSLNVSVACATILFEAQRQR 166


>gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum]
          Length = 420

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 62/287 (21%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102
            ++YG   V AAL    R++++L           A  R     +L     V+ V  + + 
Sbjct: 128 EWIYGTSVVEAALRCKRRELYKLYVYAGDNRTPAARERDRDMKDLARTAGVEIVDEEDMG 187

Query: 103 KI--VGKEAVHQGLALETAPLLSPTL---------------------------------- 126
           K+  +     H G  LE  P+    +                                  
Sbjct: 188 KMDSMSNSRPHNGYVLECLPIKRTPIIALKGVQEDRNFFTLEMARHYFDGRPVTEHYYDK 247

Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               D  R    +++LD + DP N+GAILRSA     D +  T R     S V  K+++G
Sbjct: 248 IRCRDPKRRYPFVLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAG 307

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ------------EIKNDKIA 230
           A E +P    +     + +    G+          K   +             +K   + 
Sbjct: 308 AAELLPIFEHAKSERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVV 367

Query: 231 LILGAEGKGLRPKTQETATSMAHL---HMPGI-IKALNVSNAAAVAL 273
           L++G EG+GLRP  ++ A     L         + +LNVS A A+  
Sbjct: 368 LLVGNEGEGLRPPLKKLAKFCVSLVKGPGTDSLVDSLNVSVATALLC 414


>gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis]
 gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis]
          Length = 234

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 9/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A +    +        +S  L ++      ++      
Sbjct: 53  LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHE 112

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           + T+                 +        + +      LI G+E  GL P+  +   + 
Sbjct: 113 SWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNE 172

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                   + M    ++ LN+S +  +ALY       
Sbjct: 173 PFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLN 209


>gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
 gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
          Length = 157

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A     +   +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHADYAAFLASAQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 177

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIGA  R A AF  + I      +      + K+A GA 
Sbjct: 16  EFKNALKIPLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +  + +    LQ + + G+                 Q   N+K AL+ G E  G++
Sbjct: 76  ETVIWEYVPDTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVFGNEVFGIQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +          +   G   +LNVS +  +A++    
Sbjct: 136 EEALAACDLALEIPQHGTKHSLNVSVSMGIAIWELTK 172


>gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis
           HAW-EB3]
          Length = 154

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALFEPEIAPNTGNIIRLCANNGCQLHLIEPMGFDLEEKKLRRAGLDYSDLTRVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L  M               +P  +     +  L+ G E +GL  +  E+   T 
Sbjct: 61  KDFESFLAAMDGKRIMACTTKG--SRPHTELAYEKEDVLLFGPETRGLPIEIIESLPTTQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLKIPMTANSRSLNLSNAVAIISYEAWRQI 148


>gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501]
 gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501]
          Length = 217

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   + + L  V   HN  A++RS   F        +    +         +       
Sbjct: 27  NRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFGNRLDKNIAMGAQ-RWVDI 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   S                           E    +  +A+  G E +GL       A
Sbjct: 86  HRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGLIRQA 145

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   + M G  ++LNVS AAA+ L        K
Sbjct: 146 DAAIQIPMVGFTESLNVSVAAAIVLRELGTRLRK 179


>gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
 gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
          Length = 154

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R     SC   +        E   L ++             
Sbjct: 1   MLHVALYEPEIPPNTGNIMRLCANTSCPLHLIKPLGFSLEDKQLRRAGLDY--REFAHVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++ +           +   LS+   +            L+ G E +GL     +      
Sbjct: 59  THDSLDALIQTLHRPRIWTLSTRGTRNYTDADFQKGDVLLFGPETRGLPATVLDELGVHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNAAA+ LY     
Sbjct: 119 CLRVPMYPDSRSLNLSNAAALVLYEGLRQ 147


>gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
 gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
          Length = 153

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR       +  I      P       ++    L+ +   R  + 
Sbjct: 3   IALFQPDIPQNTGTILRLCACLDVEAHIIEPAGFPVSDRNFRRAGMDYLDQVSLTRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T   Q     G + I L++       +        L+LG E  G+  +    A +   + 
Sbjct: 63  TKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDVLMLGRESAGVPDEVAAVADARLAIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LN++ AAA+ +      
Sbjct: 123 VKPGLRSLNIAVAAAMVVGEALRQ 146


>gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 268

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIF 69
           I ++ D   A++      Y+ ++  +   R           G   +   L   +  R   
Sbjct: 3   IETIDDPDDARI----AAYRDIRERDLTGR----QGLFIAEGEVVLRTLLSDASLCRPRS 54

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-- 127
            L+A             +P   PV  V    +D+IVG   +H+G+       L+ TLD  
Sbjct: 55  VLIAANRVDGLRGLLETVPAGTPVFAVGQDVLDRIVGFP-LHRGILALGEKPLARTLDAV 113

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
              +    +++    + +  NIG + R+A AF    ++T  R          + + GA+ 
Sbjct: 114 LADLPEQAVVVAASEIGNHDNIGGLYRNAAAFGAAAVLTDDRCGDPFYRKSIRVSVGAVL 173

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             P     +L   +  + +  F+ I LS  + +PL+      + AL+LG+EG GL     
Sbjct: 174 RTPGAAAPSLEALVDALEAARFEVIALSPSAIEPLKGLKPGGRRALLLGSEGPGLPASVM 233

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              T    + M G   +LNVS  +A+ LY    
Sbjct: 234 AR-TRTVGIPMAGGFDSLNVSVTSALGLYQLTQ 265


>gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           GB-1]
          Length = 153

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   L+       +    ++    P  +       A + G E +GL  +  ++  A  
Sbjct: 61  ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
 gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii]
 gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
          Length = 316

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   +L +++ + D  N+ A+ R+A A     +    +           +A         
Sbjct: 88  RTFTVLPIVEGLYDMGNLAAVCRTADALGYGAVHAVNKADGKFKMSQRTAAGADKWLDVK 147

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S          +         + S   +++       A++LG E  G+  +    A 
Sbjct: 148 AWDSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVVLGNEKFGVSAEAVAAAD 207

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A + M G++++ N+S A A+ LY  Q    +
Sbjct: 208 ACAIIPMTGMVESFNISVANALILYEAQQQRIR 240


>gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
 gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
          Length = 166

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++      P N G  +R      C+  +        + +      +G   H       + 
Sbjct: 16  LMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLATVTVHE 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253
                       +    ++ +              L+ G E  GL  +    E  T    
Sbjct: 74  NLTAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHVTERLR 133

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNAAA+  Y     
Sbjct: 134 IPMLPGRRSLNLSNAAALVTYEAWRQ 159


>gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708]
          Length = 245

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN----HFAK 282
             +ALI G E +GL  +    A  +  +       +LN++ A ++  Y          AK
Sbjct: 108 KPVALIFGREDRGLSNEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAK 167


>gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42]
 gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42]
          Length = 157

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249
             +L +  +   +  F  I                ++    + G E  GL  +  E    
Sbjct: 61  HDSLEELFEAYENGKFFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELIENNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
          Length = 175

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  D +  + + G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDVVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS    + ++      
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 242

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------PVKTVPPQTIDKI 104
           +YG++T+  A+ +  +     L  KN   +                  +           
Sbjct: 2   IYGINTLYEAIKSKIKIYKIYLNKKNKKNKKIKKIIKYSKKNKISLNEIINFKKIEKKNH 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G  A+   + L     + P +       LL++LD + D  N G+I+R++     D II 
Sbjct: 62  QGVFAIIDHIQLLKIENIIPMIYNSGKIPLLIILDSITDVRNFGSIVRTSACTGVDAIII 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             + S + ++   K++SG +  IP  +  N+   ++ + S+G Q I ++  +     +  
Sbjct: 122 ATKNSVTINSDSIKTSSGGIFKIPICKEKNIIKIIRYLKSFGIQVIAVTEKTDNICYKFN 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
             +  A ILG+E KG+  K      +   L  +   + +LNVS A    LY T    
Sbjct: 182 YKNPTAFILGSEQKGISKKYLSLCNNTVKLPLIKNSLTSLNVSVACGAILYETIRQR 238


>gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H]
 gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H]
          Length = 264

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  +  Q+ + + ++    NIG+I+RS VAF    I    R     +          +  
Sbjct: 21  DPTKCPQMYVAIYNIGKKKNIGSIVRSCVAFGVSKIFVVSRKRNEINFFGQMGTCKYITI 80

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +  +  L   L   +   +                + N   A + G EG G+  +T  
Sbjct: 81  EYFSNMKELRIHLANNNILLYACEITDRAIAVTRTPFV-NKDTAFLFGNEGTGINDETLS 139

Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277
               + ++   G    +LNVS + A+ L+   
Sbjct: 140 YCDKIIYIPQYGNGTCSLNVSVSCAIILHHFA 171


>gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana]
 gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana]
 gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 263

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A +    +        + A + ++       +     S
Sbjct: 82  LHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHS 141

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS- 250
           +  +  +       +   ++   +        + +    L+ G+E  GL P+        
Sbjct: 142 SWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHE 201

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                   + M    ++ LN+S +  +ALY       
Sbjct: 202 PYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 238


>gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20]
          Length = 152

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +    +   ++ +          +      
Sbjct: 1   MLHVIFFEPRIPGNTGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLANT 56

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  + +     +    +S +++   Q       AL+ G E  GL  +  +    ++
Sbjct: 57  RVHATWQECLEQIPGRIYAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEILDHPRVSA 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+AA+ LY      
Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146


>gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 159

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 65/140 (46%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD++ DP N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++   
Sbjct: 17  WVILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQTDI 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               L   ++       +     + L       ++ LI+G E  G+  + Q       ++
Sbjct: 77  EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 136

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 137 PIKGKAESLNAAVAAGIMIY 156


>gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
 gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
          Length = 163

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ VA +    +            L ++     + +     
Sbjct: 1   MLNIVLHEPEIPANTGNIGRTCVAANTRLHLIEPLGFRLNEKNLKRAGMDYWDKLDVTTY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  D +++  +         +                ++ G E  G+  +   +     
Sbjct: 61  IDYDDFIRRNPNAKIYMATTKATKAYTD--VEYEPDCYIMFGKESAGIPEEILVKHKDDC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+ N+ A+ LY     
Sbjct: 119 IRIPMVPDIRSLNLGNSVAIVLYEALRQ 146


>gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
 gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
          Length = 163

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ VA +    +            L ++     EH+     
Sbjct: 1   MLNIVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVRTY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  D L+K            +   K   +        ++ G E  G+  +   E     
Sbjct: 61  IDYNDFLEKNPGAKIYMATTKA--PKVYTEVNYEPDCYIMFGKESAGIPEEILVEHKEDC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+ N+ A+ LY     
Sbjct: 119 VRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9312]
          Length = 160

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
               +   L+ G E  GL     + +  +  + MP           +++LN+S A  +A+
Sbjct: 88  FKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAHKQIN 155


>gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. AS9601]
 gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. AS9601]
          Length = 160

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
                   L+ G E  GL     + +  +  + MP           +++LN+S A  +A+
Sbjct: 88  FKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAYKQIN 155


>gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group]
          Length = 168

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             + +     +     L  A  K            + +  P+         A + G EG 
Sbjct: 51  HGATSHLRFRHFASLPLARAYLKDERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGT 110

Query: 239 GLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
           GL  K  E      ++    G   +LNV+ AA++ L+  
Sbjct: 111 GLSQKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 149


>gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group]
 gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group]
          Length = 224

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             + +     +     L  A  K            + +  P+         A + G EG 
Sbjct: 53  HGATSHLRFRHFASLPLARAYLKDERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGT 112

Query: 239 GLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
           GL  K  E      ++    G   +LNV+ AA++ L+  
Sbjct: 113 GLSQKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 151


>gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 184

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             ++++L ++    N+G++ R+A +   + II +   +      ++K+A GA E +P+  
Sbjct: 32  HPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEISKTALGADESVPWSY 91

Query: 192 ISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +    ++K+ +       + ++  S+      + +  I L++G E  GL  +  +   
Sbjct: 92  TEDAYKTVRKLQAEGVKVCALEIAEGSRAHSSICMADFPICLLVGNEVDGLDDELLQACD 151

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  +   G   +LNV+ AA VAL+    
Sbjct: 152 AVLEIAQYGTKHSLNVAVAAGVALFELVR 180


>gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 183

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL H   P+N G+ +R          +        E   L ++     E+     
Sbjct: 1   MTIHIVLVHPRIPNNTGSAIRLCANTGAQLHLVEPLGFDLEDKKLRRAGLDYHEYANMKV 60

Query: 192 ISNLTD---------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             N              + +      +            ++ + + IAL+ G+E  GL  
Sbjct: 61  HKNWQAAKEALKAAGCERMVALTTKLSHPFYEYDFSSSNEDSQQENIALVFGSETAGLAD 120

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +E   A +   L M    ++LN++N+ ++ LY     
Sbjct: 121 DIREDIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQ 159


>gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 159

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           + L       N G I+R       +  +        E   + ++     +     R  N 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNL 63

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
               + L+      F+    ++ +              L+ G E +GL  +  E+     
Sbjct: 64  EAFLEYLENEREGDFRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQ 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNA A+  +     
Sbjct: 124 RIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
 gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
          Length = 159

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALN 264
           ++    ++ +              L+ G E +GL  +  E+        + M    ++LN
Sbjct: 78  YRIFACTTKTTGHHVDAKFQQGDVLMFGPESRGLPAEFIESMPMEQRIRIPMMPEARSLN 137

Query: 265 VSNAAAVALYITQNH 279
           +SNA A+  +     
Sbjct: 138 LSNAVAIIAFEAWRQ 152


>gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
 gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106a]
 gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
          Length = 179

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 2/162 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              S            +VL     P N G ++R          +      P + A + ++
Sbjct: 11  HTHSHAFHRSNRIMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRA 70

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                E+       +    +        +    ++                 + GAE +G
Sbjct: 71  GLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRG 130

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L P   +         L M    ++LN+SN  AV ++     
Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 172


>gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis
           thaliana]
          Length = 271

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 7/109 (6%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
              A             +      +         ++    ++         L+ G+E  G
Sbjct: 138 VKRAGGRKTNDSFYKKRNKDTFKIATITSNWVAENNGYNLMQDFSYRSGDYLLFGSETSG 197

Query: 240 LRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           L P+                + M    ++ LN+S +  +ALY       
Sbjct: 198 LPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 246


>gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
 gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
          Length = 157

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +V+     P N G + R+  A +    +       ++  +L ++     + +    
Sbjct: 1   MAIHVVMFQPEIPANTGNVSRTCAATNSVLHLIRPLGFSTDDKMLKRAGLDYWQFVDVRY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQET-AT 249
             +L +  +K     F  I    +           D     + G E KGL  +  E    
Sbjct: 61  HDSLEELWEKHPDGQFFYITKYGEQYPSDLDVSDVDGDYFFVFGRETKGLPMEVIENNLD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L    ++++LNVSN AA+ +Y     
Sbjct: 121 RCIRLPQSNLVRSLNVSNTAAIIVYEALRQ 150


>gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 190

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
            +       A +LG EG GL  K  E      ++   G    +LNV+ AA++ L+   
Sbjct: 86  HKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVYIPQNGPGTASLNVTVAASIVLHQFA 143


>gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5]
          Length = 166

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G            L        + G +    ++ + +        D   ++ G E  G+ 
Sbjct: 50  GMDYWEHLDVTRYLDYEDFLKKNPGAKIYYATTKAPQTYTDVQYEDDCFIMFGKESAGIP 109

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                    +   + M G I++LN+SN+ A+ LY       
Sbjct: 110 EDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQHN 150


>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 177

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 3/169 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   +   T        L+++L+ +   +NIG+  R+A AF+ + +      +      
Sbjct: 8   WELDRVDEQTFKTQEKFPLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHRE 67

Query: 176 LAKSASGALEHIPYIRISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + K+A GA E I +    ++      L++                      +K+ + AL+
Sbjct: 68  IHKTALGATETIDWEYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALV 127

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            G E  G+     +++  +  +   G   +LNVS  A + L+     + 
Sbjct: 128 FGNEVDGVDQSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWEFAKRYI 176


>gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
 gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
          Length = 232

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 8/180 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             +  + ++ +       +G   E        + + R     +V + V   HN  A++RS
Sbjct: 10  YILDIELLEYL-------KGFLTEERMERFEKILSERTKHFTVVTEDVYQIHNTSAVMRS 62

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF    +   +              +     +          +  K   +        
Sbjct: 63  CDAFGIQDLHLVEEKFGKRVDKEIAMGAQKWVTLHRHSNLEDCVSTLKDKGYQIVATSPH 122

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +D+           K A+  G E  GL     E A ++  + M G  ++LN+S +AA+ +
Sbjct: 123 ADASYLH-DFDYTKKSAIFFGTEKDGLTEGVLEQADALIKVPMYGFTESLNISVSAAIIM 181


>gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 156

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R A    C   +        +   L ++     E+ P  R ++ 
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCRLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +    ++    PL ++       L+ GAE  GL  +       +    
Sbjct: 64  DALLESERPDPARMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAELLARFPDSQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AVA++     
Sbjct: 124 LPMRAGQRSLNLSNAVAVAVFDAWRQ 149


>gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +  ++ ++ D++    N+G++ R+A       II        E + + K+A G  + + 
Sbjct: 114 QKAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTEKLVA 173

Query: 189 YIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +    + T+A+   H    F     + D+ K + Q +    +A+++G E  G+     E 
Sbjct: 174 WQYFPSTTEAIAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVIGNEALGIESSILEL 233

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 L   G   +LNV  A  + LY  
Sbjct: 234 CDEFITLPQLGWKNSLNVGVATGIVLYQI 262


>gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 225

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 3/165 (1%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   + ++R   L ++L+ +   HN  A++RS   F    +   +  +  +     
Sbjct: 16  VKGQMFDEVASMRTRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVESKNKYKVQRDI 75

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGA 235
              +G    +                         +                 +AL  G 
Sbjct: 76  ARGAGRWVDLFNYNEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQPVALSFGT 135

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E +G+  + +E A     + M G  ++ NVS + A+ L       
Sbjct: 136 EWEGISDEIREIADYKVSIPMVGFTESFNVSVSVALTL-QALRQR 179


>gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 3/153 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P+N G I R  VA +    +  K         L ++       + Y 
Sbjct: 2   RYNLHVVLIEPQIPYNTGNIGRLCVATNSKLHLVGKIGFSLNDKYLKRAGLDYWSFLDYE 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249
              N  + +++  +  F  +   +            +   LI G+E  G+  +  E    
Sbjct: 62  VYKNFEEFVERNKNGRFIFVESPAFKLYTE--VSYQEGDYLIFGSEDYGIPSEIIEKYWE 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +   + M G +++LN+S++ AV +Y       K
Sbjct: 120 NSVTIPMFGPVRSLNLSSSVAVVVYEALRQIKK 152


>gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894]
          Length = 157

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVM 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHADYAAFLEAEKPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDVLPQEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
 gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
          Length = 154

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N GAI+R      C   +            + ++      H      
Sbjct: 1   MIEIALFEPEIPQNTGAIIRVCANTGCILHLIEPLGFDFNEKRVRRAGLDY--HEIANIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +           G + +  ++ +     Q        L+ G E +GL  +  +      
Sbjct: 59  HHKNYQDFLESVKGKRILACTTKTTTYHSQANFQSGDVLLFGPETRGLPSELLDALPLEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N++NA +V +Y      
Sbjct: 119 KLRIPMQPNSRSMNLANAVSVFVYEAWRQL 148


>gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct]
          Length = 154

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L   L+       +    ++   +   +       A + G E +GL    +       
Sbjct: 61  PYLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
          Length = 153

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L   L+       +    ++   +   +       A + G E +GL    +       
Sbjct: 61  PYLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07]
 gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           PSI07]
          Length = 175

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 20  MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 79

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    L+       +   L++    P            + G+E +GL  + +     + 
Sbjct: 80  ASWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAWFPPSQ 139

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 140 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis MSMB43]
          Length = 156

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +        +    ++                 + G E +GL     E   A  
Sbjct: 61  RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGPETRGLASALVERFPAGQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 223

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%)

Query: 64  PSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
               I +    ++   R          +      V    + K  G E  H G+       
Sbjct: 1   RPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELAKASGTE-HHGGVCFLIKKR 59

Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              T+        +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    
Sbjct: 60  NGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAI 118

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A G  EH+  I   ++ D L      G+  +  SSD  + L      +K+ L+LG E 
Sbjct: 119 RTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREY 178

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             L    +E       ++  G +++LNVS A  V L      
Sbjct: 179 DYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 220


>gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 158

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
            N+ + L  + +          L++   +       N  +AL++G E +GL  + +    
Sbjct: 61  ENIEECLAHLQTKGIGIDAVYPLTTKGFETPHTADLNRPVALLMGPETRGLPEQVRLMFP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L M    ++LN+SNA AV +Y     
Sbjct: 121 EQHWIRLPMAPESRSLNLSNATAVIVYEAWRQ 152


>gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 170

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +     +    +   +VL     P N G ++R A    C   +            LA++ 
Sbjct: 1   MHLHPANLGYPAMFEIVLYQPEIPPNTGNVIRLAANTGCRLHLVAPLGFDLSDKQLARAG 60

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                H       +   A  +    G +   +S+ + +  ++       AL+ G E +GL
Sbjct: 61  LDY--HDLTCLTVHPDWAHCREVLAGRRMFAMSTRASRRHDRVDFQPGDALLFGPESRGL 118

Query: 241 RPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +            + M    +++N+SNA AV +Y     
Sbjct: 119 PEEILREFAPERRVRIPMRPTNRSVNLSNAVAVVVYEGWRQ 159


>gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFAAVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +   L++            D   L+ G E +GL     +      
Sbjct: 59  RHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNSVSVVVYEAWRQL 148


>gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 154

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +           +    ++               AL+ G E +GL  +  E+     
Sbjct: 59  RWPSYEAFLAAVAPERVFACTTKGSTAHSAAQFAPGDALLFGPESRGLPLEIIESLPFEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y +    
Sbjct: 119 RLRIPMLPQSRSMNLSNAVAVFVYESWRQL 148


>gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis
           MR-1]
          Length = 154

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KNFDAFLKAMAGKRIMACTTKG--SRPHSELSFAKDDVLLFGPETRGLPMSIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
 gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
          Length = 168

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     PHN G I+R+         +        +   L +      +      
Sbjct: 13  MPINIVLVEPEIPHNTGNIIRTCANTGAQLHLIKPLGFSLDDKHLKRCGLDYWDIADIKY 72

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-S 250
             +  +  +K     +      +           N+   L+ G E KGL     E     
Sbjct: 73  YDSFEELQEKYPEANYFYATTKTQKSYAD--VEYNEGCFLVFGKETKGLPKDLIEKNEGH 130

Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280
              + M G    + LN+SN+ A+ +Y      
Sbjct: 131 CIRIPMRGIEGARCLNLSNSVAIVVYEALRQL 162


>gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046]
 gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046]
          Length = 159

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
               + L               L++   +       N  +AL++G E +GL  + +    
Sbjct: 61  ETFDECLANLALKGVDINAIYPLTTKGTETPHTSDLNRPVALLMGPETRGLPEQVRMLFP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L M    ++LN+SNA AV +Y     
Sbjct: 121 KEHWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 235

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPV----KTVPPQT 100
              + L G H V  AL       + ++L T          ++ P    V    + V    
Sbjct: 2   AGEVLLEGFHAVKHALRFGGAGAVREVLLTDRDAVLALARSHAPDLVDVFAAVEPVTAAE 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + +  G+   H       A   +  +     +  L++LD+  +  N GA++R A      
Sbjct: 62  LVRRTGRA--HPTGVAGFAARPAAAVPGPDRTAPLVLLDNPRNLGNFGAVVRVAAGLGAS 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+++T    P             +          L  A     +     +       +P+
Sbjct: 120 GVVSTGDVDPWHP---------TVLRGSAGLHYALPVARVDDPAALEGELFAFDADGEPV 170

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++    D   L  G+E  GL  +T+  A  +  L M  ++ + N++ + A+ALY 
Sbjct: 171 DRVRFPDGAVLAFGSERHGLSERTRARADRVVSLPMRPLVSSYNLTTSVAMALYH 225


>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q    +   L+ G E +GL P+         ++ MPG +++LN++ A  VA Y      
Sbjct: 88  YQARFQEGDYLLFGPETRGLPPEVLGRF-PSLYIPMPGPVRSLNLAVAVGVAAYEAYRQL 146

Query: 281 AK 282
            +
Sbjct: 147 RE 148


>gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS155]
          Length = 154

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KDFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|255638690|gb|ACU19650.1| unknown [Glycine max]
          Length = 260

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 9/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A +    +        +   L ++      ++      
Sbjct: 78  LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHD 137

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +  D          +      +    K   +        LI G+E  GL P+      + 
Sbjct: 138 SWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTE 197

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                   + M    ++ LN+S +  +ALY       
Sbjct: 198 PFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLN 234


>gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    L+       +   L++    P            + G+E +GL  + +     + 
Sbjct: 61  ASWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGFPPSQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis]
 gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis]
          Length = 517

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 104/277 (37%), Gaps = 53/277 (19%)

Query: 58  SAALNNPSRKIFQLLATKN----------ALARLDWDANLPHPF--PVKTVPPQTIDKIV 105
            AAL+   R+ + L   +                +    +       ++ V    ++ IV
Sbjct: 237 LAALSAARREFYALYVQEGLDLTNNKKKKDKKGFEKVLKMAQRIGLSIRRVSKHDLNMIV 296

Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQGL L+ +PL    +              L + LD V DP N+GAI+RSA  F 
Sbjct: 297 D-NRPHQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFFG 355

Query: 159 CDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             GI+   + S   S V++K+++G+          + +   +    +      G  +   
Sbjct: 356 AAGIVLCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASMA 415

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGI---------- 259
            PL + +  +   L+LG+EG GLRP  + + T +  +         M G           
Sbjct: 416 VPLNEVVPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPMDVTMGGNDVVESEEINL 475

Query: 260 ------------IKALNVSNAAAVALYIT--QNHFAK 282
                       +++LNVS AA V L+     N  AK
Sbjct: 476 QHSSEGFRSFLAVESLNVSVAAGVLLHHLIGSNQMAK 512


>gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 41/151 (27%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L       N G I+R          +        +   L ++     E        + 
Sbjct: 4   IALYQPQIAPNTGNIIRLCANTGAVLHLIHPLGFAWDDRRLRRAGLDYAEFADIRHHDDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
                 +       +                    L+ G+E  GL P        T    
Sbjct: 64  AAFTADIAGRNIWALTTKGTRSLYDATISAE--DVLLFGSETAGLPPFIHAELENTQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH--FAK 282
           L M    ++LN+SNA AV LY        AK
Sbjct: 122 LPMRPTSRSLNLSNAVAVVLYEAIRQNLRAK 152


>gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 319

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 14/251 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFP 92
             + +     +     + G+  V    +    KI +   T     R              
Sbjct: 13  QLSHEPPKRRRASLT-VCGLRAVETLGSIHPEKIHRFFFTPVRAKRFGPLCAYLAARKRL 71

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHN 146
            ++   Q ++++  +   HQG+A                   V+  + +++LD V D HN
Sbjct: 72  YRSANTQELERLT-QSVHHQGVAATIDEPRFPAVTHSQVEFWVQRREFVVLLDRVGDAHN 130

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA  F    ++ +     ++        +        +        + +M +  
Sbjct: 131 LGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCTNAQEVLEMCAGK 190

Query: 207 FQTIGLSSDSKKP----LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              +G S  + +            + + L+LG E  GL          +  +   G +++
Sbjct: 191 MTRVGASPHAFRSLTRLSNILSPEEAVILVLGNEETGLSEHLTAHCDHLCRIAGSGQVES 250

Query: 263 LNVSNAAAVAL 273
           LNV+ A A+ L
Sbjct: 251 LNVAQAGALFL 261


>gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 151

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   ++K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  PDLASCMEKIGNPRLFAFTTKG--SRPFHDASFEPDDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 156

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     E +    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +  +   +        +    +    +     I G E  GL    +E    +
Sbjct: 61  HDSIEAFFETTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   I++LN+SN AA+ +Y       
Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQQN 151


>gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L + L   + P N G ILR A        I            L ++    +  +   
Sbjct: 1   MNELRIALYQPDIPGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTMT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  N         S G + +  S+ +  P  + +      L+LG E  G+  +  E A +
Sbjct: 61  RHVNWERFETWRSSTGRRLVLASTKAAVPYTRFMFKPDDILLLGRESAGVPDQVHERADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++ A A+ +      
Sbjct: 121 RILIPMAPGQRSLNIAMAGAMIVGEAIRQ 149


>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
 gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
          Length = 156

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +   L++    P  +         + G+E +GL P+ ++      
Sbjct: 61  ESWDALMASEQPDPARMFALTTRGSTPFGEVAFRPGDWFVFGSETRGLSPERRDWFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 161

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +   K     +      +                L+ G E +GL     E    +   +
Sbjct: 63  EELYAKYPDRRYFYATTKAKHVHSD--VKFEIGDMLVFGPETRGLPESLLEGNEETCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SN+ A+  Y      
Sbjct: 121 PMVEEARSLNLSNSVAIIAYEAMRQL 146


>gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
 gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
          Length = 169

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + L        +   +    ++  +             ++ G E  G+ 
Sbjct: 49  GMDYWKQLDVRTYLDWEDFCAKNPDARIWMATTKGRHVYSDVSYGPDDYIMFGKESAGIP 108

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +           + M G I++LN+SN+ A+  Y     
Sbjct: 109 EEILIRQPERCIRIPMQGEIRSLNLSNSVAIVAYEALRQ 147


>gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
 gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
          Length = 161

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 4/157 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
              + +  L +VL     P N G I R   A   +  +        E A L ++      
Sbjct: 2   EWPMEHQGLGVVLVAPQIPQNTGNIARICAATFSELHLVKPLGFSLEDAALRRAGLDYW- 60

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                             +   + +   + +  P           L+ G E KGL  +  
Sbjct: 61  -KEVRLFLWEGWDHFTAANPRKRLLFFETGTYPPYFTASFAPGDMLVFGRETKGLSQRIL 119

Query: 246 ETATSMAH-LHM-PGIIKALNVSNAAAVALYITQNHF 280
             +    + + +  G +++LN++N  ++ LY      
Sbjct: 120 SFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQI 156


>gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group]
 gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group]
 gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group]
          Length = 236

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 7/99 (7%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               N             + +  +                 L+ G+E KGL     E  +
Sbjct: 113 HDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSALEDCS 172

Query: 250 S------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                     + M    ++ LN+S +  VALY       
Sbjct: 173 REGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 211


>gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7]
          Length = 154

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KNFDAFLEAMTGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406]
          Length = 176

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T    + + +++VLD+V   HN+G+  R+A AF  + I          +  + K+A GA 
Sbjct: 16  TFKKTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +         L K+ + G+Q                   K +K  LI G E  G+ 
Sbjct: 76  ESVEWEHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIFGNEVYGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   + NVS    + L+      
Sbjct: 136 EEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRRI 174


>gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
 gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
          Length = 277

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 4/258 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +    +++    + S   +  +   +     +   +    + I    ++   L     D 
Sbjct: 14  SDPAVQRIIDVTKHS--RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDL 71

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV+ +    ++++   E   +   +   P  +   D       ++VLD V    
Sbjct: 72  CRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVG 131

Query: 146 NIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           NIGAI+R+     +   ++     +      L +++ G +  +P +             +
Sbjct: 132 NIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDN 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  +       +   + D++AL+ G+E  G     QE +     + M    ++LN
Sbjct: 192 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 251

Query: 265 VSNAAAVALYIT-QNHFA 281
           VS +  +AL+     +FA
Sbjct: 252 VSVSVGIALHERSARNFA 269


>gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana]
          Length = 210

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +        S +     +           K            +D    + +       A 
Sbjct: 29  DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 88

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           +LG EG GL  K  E      ++   G    +LNV+ AA++ L+  
Sbjct: 89  LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 134


>gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana]
          Length = 278

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +        S +     +           K            +D    + +       A 
Sbjct: 41  DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           +LG EG GL  K  E      ++   G    +LNV+ AA++ L+  
Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146


>gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana]
 gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 222

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +        S +     +           K            +D    + +       A 
Sbjct: 41  DFNAFGSHGSASHIRFRHFHSLIEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           +LG EG GL  K  E      ++   G    +LNV+ AA++ L+  
Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146


>gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase
 gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus]
          Length = 274

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 4/258 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +    +++    + S   +  +   +     +   +    + I    ++   L     D 
Sbjct: 11  SDPAVQRIIDVTKHS--RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDL 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV+ +    ++++   E   +   +   P  +   D       ++VLD V    
Sbjct: 69  CRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVG 128

Query: 146 NIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           NIGAI+R+     +   ++     +      L +++ G +  +P +             +
Sbjct: 129 NIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDN 188

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  +       +   + D++AL+ G+E  G     QE +     + M    ++LN
Sbjct: 189 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 248

Query: 265 VSNAAAVALYIT-QNHFA 281
           VS +  +AL+     +FA
Sbjct: 249 VSVSVGIALHERSARNFA 266


>gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 205

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     + + AL++G E KG++    + +     +   G   +LNVS  A + ++ 
Sbjct: 138 HPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWE 197

Query: 276 TQNHF 280
                
Sbjct: 198 FARRL 202


>gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 228

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 63  NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+       
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P L  +        L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 187 EGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 221


>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
          Length = 155

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A      +       ++ A L ++       +    
Sbjct: 1   MAFHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVNLTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             + ++  ++     F      ++ +         D    + G E KGL  +  +     
Sbjct: 61  YDSFSEVEERFKGHRFFYASTRANKRYSD--FEYKDGDLFVFGKETKGLPQELLDANPNQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M   +++LN++N+AA+ +Y     
Sbjct: 119 LIRMPMTDKVRSLNLANSAAIVVYEALRQ 147


>gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5]
 gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +  +      F  I           +    ++    + G E  GL     +    
Sbjct: 61  HDSLEELFEAYEKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 235

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 5/239 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +    ++ G +T+        R I Q+L+TK      +    L     +     +  + 
Sbjct: 2   QKDNFFWVGGKNTIHEISKWKRRTIKQVLSTKKINTSENLQETLVDQKKI----NKIFND 57

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                     L  +T  L    +  + +   +++LD+VND  NIG+I+R+  AF    +I
Sbjct: 58  PNFVHQGLAALIEKTKFLKDKDIKNIPDHSNIVLLDNVNDIRNIGSIIRNCAAFEISHLI 117

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             ++    +S  L KSASGA EHI +I++SNL  A+Q++   GF     + D+K+ +++ 
Sbjct: 118 I-EKKINIDSHYLFKSASGATEHIQFIKVSNLNTAIQELKRNGFFVFSAALDAKQTMKEI 176

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               K  ++LG+EG+G+R    + +     +     I +LNVSN +A+       +  K
Sbjct: 177 SFGSKNCIVLGSEGEGVRNLISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHLYQNTCK 235


>gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 152

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 6/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +    +   ++ +          +      
Sbjct: 1   MLHVIFFSPRIPGNTGAAIRLSANTGAMLHLVDPLFDMDDAKLRRAGLD----YHDLAST 56

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  + +     +    +S +++   Q   +   AL+ G E  GL  +  +    ++
Sbjct: 57  RVHATWQKCLEQIPGRIFAFTSHTERLYTQVDWHGDDALLFGPEPTGLPQEILDHPRVSA 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+AA+ LY      
Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146


>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
          Length = 144

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +       ++   L ++            
Sbjct: 1   MALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWY--AVHI 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             + +    +      +    S+ + K        D   L+ G E KGL P+       S
Sbjct: 59  EYHDSFEELQQKYPEGRFFYTSTKATKRYCDIAFQDGDFLVFGKETKGLPPELLAANPDS 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M   +++LN+SN+AA+ +Y  
Sbjct: 119 CIRMPMTDKVRSLNLSNSAAIIVYEA 144


>gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 152

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIRRSGLDYWHSVKLTIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L              +  K         +   ++ G E +G+     +        +
Sbjct: 63  EEFLASDPEMRLFYATTKTKQKYSD--VRYQENDYIMFGPESRGIPEDILKQDPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M  + ++LN+SN+AA+ LY       
Sbjct: 121 PMIPMGRSLNLSNSAAIILYEALRQVN 147


>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 178

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L++VLD +   HNIG++ R++ AF  + II     +   +  + K+A GA 
Sbjct: 16  DFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +    N+ + ++ +            + S       Q  KN K AL+ G E  G+ 
Sbjct: 76  ETVAWEHHENVLEVIENLKKENVLTLAIEQVESAVFLQDFQVEKNQKYALVFGNEVYGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +          +   G   +LN++ +A + ++       
Sbjct: 136 QEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQKLN 175


>gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
 gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  +   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63

Query: 196 TDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
            + L+  +   +   T   S +         +N+ I  I G E KGL  + +E  +    
Sbjct: 64  DEFLEATNDKHYYLITKFGSKNYCDFDFSNEENEDIYFIFGRETKGLPKEFREKYSEQAL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH--FAK 282
            + M   +++LN+SN AA+ +Y       F K
Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQSFNK 155


>gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +        + A L ++      +     +
Sbjct: 1   MLHIIFWEPEIPGNTGAAIRLSACTGSMLHLVKPLGFDMDDAKLRRAGLD---YHDLAHV 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  + +     +   L+  +          D   L+ G E  GL            
Sbjct: 58  MVHDSLDEALAEVPGRVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVED 117

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN++N+A++ LY      
Sbjct: 118 RVRIQMVDGVRSLNLANSASIVLYEAWRQL 147


>gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
 gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
          Length = 175

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  DA+  + + G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMFDELQLDKTKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +     +   G   +LNVS    + ++      
Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae
           Ep1/96]
 gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
          Length = 156

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I+R          +        +   L ++      H       
Sbjct: 1   MHIVLFEPEIPPNTGNIIRLCANTGFQLHVIEPLGFAWDDKRLRRAGLDY--HEFAAIRH 58

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           + +           +   L++                L+ G E +GL  +  +   A   
Sbjct: 59  HASYEAFAASEAPQRLFALTTKGTPAHSAVSFQAGDYLLFGPETRGLPARVLDALPAQQK 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    +++N+SNA +V +Y      
Sbjct: 119 IRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147


>gi|241205747|ref|YP_002976843.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859637|gb|ACS57304.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G ILR A        +            L ++    +      
Sbjct: 1   MTSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  N         + G + I  S+ + +            L+ G E  G+  +  E A +
Sbjct: 61  RHVNWDRFEAWRLTTGRRLILASTKAAERYTDLAFRPDDVLLFGRESAGVPDQVHERADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 121 RVLIPMVEGQRSINVAVSAAMIVGEAMRQ 149


>gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
 gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
          Length = 191

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 25/70 (35%)

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++        +      A++LG E KG++    + +     +   G   +LNVS    
Sbjct: 119 NPTNHQHPTPNTQHPVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTG 178

Query: 271 VALYITQNHF 280
           + ++      
Sbjct: 179 IVIWEFARQL 188


>gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 175

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  DA+  +   G+    +       +  +    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDQLELDKTKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS    + ++      
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
 gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
          Length = 168

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +QL +V+     P N G + R+  A      +        +   L ++       +   
Sbjct: 1   MAQLNIVMVEPEIPQNTGNVARTCAATGARLHLVGPMGFTIDDKKLKRAGLDYWHLLDIT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
              NL +  +K     F      +            D   L+ G E  GL  K   +   
Sbjct: 61  YYENLEEFFEKNKGGNFYYFSTKA--PHRHTDLAYPDNCYLLFGKETAGLPEKLLFDNPD 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   + M    ++LN+SN+ AV +Y     
Sbjct: 119 TTVRIPMIDEARSLNLSNSVAVGVYEVLRQ 148


>gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2]
 gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L   L+       +    ++   +   +       A + G E +GL    +       
Sbjct: 61  PDLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRDDAFLFGPESRGLPEDVRNALPTDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
 gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
          Length = 164

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +    K    G      ++ + K   +    D   L+ G E KGL    
Sbjct: 52  YWNEVDISYYDSFQELKEKYTGCSFYYATTKAVKNYAEIEYPDNCFLVFGKETKGLPEDI 111

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +       + M G I++LN+SN+ A+ +Y T     
Sbjct: 112 LVDNREWCIRIPMIGEIRSLNLSNSVAIIVYETLRQKN 149


>gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 160

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
                   L+ G E  GL     + +  +  + MP           +++LN+S A  +A+
Sbjct: 88  FKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAHKQIN 155


>gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + +   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|319781864|ref|YP_004141340.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167752|gb|ADV11290.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 152

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L + L   +   N G ILR A        I      P     L ++    LE     
Sbjct: 2   NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +     +   +   + + LS+ +          D   L+ G E  G+     + A +
Sbjct: 62  RHVDWHAFEEWRKADSHRLVLLSTKATTAYTSFSFADGDVLLFGRESAGVPDPVHQAADA 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G  +++NV+ + A+ +       
Sbjct: 122 RLTIPMQGTARSINVALSVAMVVGEAIRQL 151


>gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +        + A L ++      +     +
Sbjct: 1   MLHIIFWEPEIPGNTGAAIRLSACTGSMLHLVEPLGFDMDDAKLRRAGLD---YHDLAHV 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  + +     +   L+  +          D   L+ G E  GL            
Sbjct: 58  MVHDSLDEALAEVPGRVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVED 117

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN++N+A++ LY      
Sbjct: 118 RVRIQMVDGVRSLNLANSASIVLYEAWRQL 147


>gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 151

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   ++K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  PDLASCMEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937]
 gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937]
          Length = 154

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLASVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P ++        L+ G+E  GL    +       
Sbjct: 59  RHRNYQDFLQAVAGRRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDDIRNGFAPEC 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+  Y     
Sbjct: 119 RIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147


>gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 152

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +V  H   P N G  +R A        +        + A L ++     +       
Sbjct: 1   MFHVVFYHPEIPGNTGNAIRMAAGSGAALHLIEPLGFSVDDAKLRRAGLDYHDRAALHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            +L  A   +          S+                L+ G E  GL P+  E A  + 
Sbjct: 61  PDLDAAWTALRPDRVFAFSSSATRSYET--VSYRPGDVLMFGPESVGLPPELLE-ADYVT 117

Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++N+AA+A+Y     
Sbjct: 118 PLRIPMLPGNRSLNLANSAAIAVYEAWRQ 146


>gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
          Length = 166

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +        +   ++ G E  G+  +   E   +   + M G I++LN+SN+ A+ LY 
Sbjct: 85  PQRYTDVRFEEDCYIMFGKESAGIPEEILLENQATAIRIPMIGDIRSLNLSNSVAIVLYE 144

Query: 276 TQNH 279
               
Sbjct: 145 ALRQ 148


>gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus
           capsulatus str. Bath]
          Length = 159

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +        + A L ++             
Sbjct: 1   MFHVVLYEPEIPPNTGNVIRLCANTGACLHLIEPLGFEMDDARLRRAGLDY--REWAEVA 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +             +   L++  +            A + G E +GL            
Sbjct: 59  RHRDWEGFVGAVAPERIFALTTRGEVSHADVTYRPGDAFLFGPESRGLPAALLARFETGR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV  +     
Sbjct: 119 RIRLPMRPGSRSLNLSNAVAVVCFEAWRQ 147


>gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 203

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMV 137
           +    LP   PV +VP   +D + G   VH+G+         P L  +        L++V
Sbjct: 3   EQLRQLPLGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVV 61

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  +++  N+G+I R+A AF  D ++  +           + + GA   +PY     + D
Sbjct: 62  LCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDD 121

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
               +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  E     A + M 
Sbjct: 122 INAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMS 180

Query: 258 GIIKALNVSNAAAVAL 273
               +LNV+ A+ +AL
Sbjct: 181 KTFDSLNVATASGIAL 196


>gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 173

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R+ V       +        +   L +SA    + + +   
Sbjct: 1   MIHVVLCQPEIPQNTGNIMRTCVGSGVHLHLIKPLGFKIDDTKLRRSAVDYYDALNFEIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +      +              +      +     I L+ G+E  G+      +   + 
Sbjct: 61  EDFESFQNEHPGTYLYLSRYGRKTHSAPNYQAIKGDIYLVFGSESYGIDRALLSKNIENT 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +     I++LN+SNA A+ +Y      
Sbjct: 121 FRIPTNDKIRSLNLSNAVAITVYEVLRQL 149


>gi|86358645|ref|YP_470537.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282747|gb|ABC91810.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 153

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 51/149 (34%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G +LR A        +            L +S    +      
Sbjct: 1   MTNLRLALYQPDIPGNTGTLLRLAACLGFAVDLIEPAGFNVSDRDLKRSGMDYIAAAALT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R ++         + G + I  S+ + +     +      L+ G E  G+     E A +
Sbjct: 61  RHASWDRFEAWHAATGRRLILASTKAAERYTDFVFRPDDVLLFGRESAGVPDHVHERADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 121 CILIPMVEGQRSINVAISAAMIVGEAMRQ 149


>gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
 gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
          Length = 176

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +      + +++VLD++   +NIG++ R+A AF  + I      +      + K+A GA 
Sbjct: 16  SFKKTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           E + +    +  + ++++ +   +   +       +  E    K    AL+ G E KG+ 
Sbjct: 76  ESVSWEYRKDTLELIKELQADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGNEVKGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +    +  +  +   G   +LN+S +A + ++       K
Sbjct: 136 QEVVSASDVVLEIPQFGTKHSLNISVSAGIVIWDFWTMLNK 176


>gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 157

 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 53/152 (34%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N   +++L+     +         +  +   +I    +   +  +         +   
Sbjct: 1   MVNKMNIVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIRRAGLDYWKDVKL 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++  +      + + +   +    ++ +K+       ND   ++ G E +G+  +     
Sbjct: 61  FVWENWEHFWRENIENGNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNRY 120

Query: 249 TS-MAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M  + ++LN+SNA A+ L+     
Sbjct: 121 KESNITIPMLPLGRSLNLSNAVAIVLFEALRQ 152


>gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 165

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R       +  +       ++   L ++       +      
Sbjct: 1   MHIVLVEPEIPGNTGNIARLCAGTGMELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           +     Q+ H   F      +                L+ G E  GL      +   +  
Sbjct: 61  SFAALHQQYHEHTFYFCSTKARHSYCD--ISYKIDDFLVFGKESAGLPESLLTDYEANTI 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA AV  +     
Sbjct: 119 RIPMREEARSLNLSNAVAVVAFEALRQ 145


>gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106]
 gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 4/153 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--- 184
             R  QL ++L+ +  PHN  A LR+  +F    +   +  +  +        S      
Sbjct: 30  QQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSLGSHRWLTI 89

Query: 185 -EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +      +      +              + +  +EQ    +K+ L+ G E  GL   
Sbjct: 90  SRYNEPKINNTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLMFGTELNGLSDD 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               A  +  + M G  ++ N+S + A+ LY  
Sbjct: 150 AVSQADYLVRIPMVGFSESFNISVSVALCLYEI 182


>gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9902]
          Length = 166

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 9/160 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + L + L     P N G I R+  AF     +        +   + ++      H+ 
Sbjct: 5   NPEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSVRRAGLDYWPHVQ 64

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +     Q +                            L+ G E  GL    ++  
Sbjct: 65  LSTHGSFEAMKQVLLPQSRIIGCSRRGGSCLS-DFEFQHGDVLLFGREDTGLPDDVRDQC 123

Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
            ++  + MP        G +++LN+S A A+  Y+  +  
Sbjct: 124 HTIVTIPMPGAADSSGQGGVRSLNLSVACALVTYVAGHQL 163


>gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
 gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
          Length = 154

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A      +        E   L ++       +    
Sbjct: 1   MSIHVVLHEPEIPQNTGNIARTCAATGAILHLIEPLGFSLEDRYLRRAGLDYWPMVDLRV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
            S+    L++        +         + +    D+  L+ G E  GL  +  E     
Sbjct: 61  HSSWEAFLEEERPSSLFLLSTRGTRPYHVCE--FPDETYLVFGKETAGLPARILEAFPDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  + M    ++LN+SNA A+ +Y    
Sbjct: 119 VVRIPMREGARSLNLSNAVAILVYAALR 146


>gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 286

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 23/259 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY ++     + R  +Q           ++ A+          L     L  +      
Sbjct: 14  ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLEEMRPVIAS 72

Query: 88  PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133
                        PV   P + ++ I G       LA    P L+   + + +++     
Sbjct: 73  AAGCGGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPELAGVPELLSSARGGAGA 132

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI
Sbjct: 133 KRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI 192

Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  +               T     +          + ++A++LG EG GL  +T 
Sbjct: 193 ERWPAMDELHAQGFTVAALALSDTSVALDEFAASPACTAPDSRVAVVLGTEGDGLSHRTI 252

Query: 246 ETATSMAHLHMPGIIKALN 264
             A  +  + M G + +LN
Sbjct: 253 TAADEVVRIPMAGGVDSLN 271


>gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 266

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 5/240 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY        +    +            +  AL         L                
Sbjct: 16  ADYSHRTDVALRKAAGAGHGIYLAESALVLERALRAGHAPRSVLAL--GGTVDEALALVG 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV T P + + ++ G       +A    P L      + +++ ++VL+ V DP N+
Sbjct: 74  DRDVPVFTGPGELLAELTGYVLHRGVVASLDRPALPTVASLLADARRVVVLEDVVDPTNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++ T R +        + + G +  +P+ R     +    +   GF
Sbjct: 134 GAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAGF 193

Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                            +  ++ ++A++LG+EG GL  +   +A ++  + M   I +LN
Sbjct: 194 HVAALALTPDAVSIRDFRAEEHARLAIVLGSEGPGLSAEAISSADTVVRIPMAHGIDSLN 253


>gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           pseudintermedius ED99]
          Length = 156

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+  A      +       ++  +L ++     +++    
Sbjct: 1   MPIHVVLYQPEIPANTGNIARTCAATDTHLHLIRPLGFSTDDKMLRRAGLDYWKYVSITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N+    ++     F      S +    +    +     I G E  GL    ++   + 
Sbjct: 61  YDNIESFFEQTEGQYFLLTKFGSKNHTSQDFSDVDQNYYFIFGKETTGLPDWVKDKYDNT 120

Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M   ++ALN+SN AA+ +Y       
Sbjct: 121 ALRIPMNENVRALNLSNTAAILVYEALRQQN 151


>gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 222

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +        S +     +           K            +D    + +       A 
Sbjct: 41  DFNAFGSHGSASHIRFRHFHSLIEARTYLKEEKDCDICGVEIADGASAVNEHPFKRNTAF 100

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           +LG EG GL  K  E      ++   G    +LNV+ AA++ L+  
Sbjct: 101 LLGNEGSGLSAKEYEICDFFVYIPQYGCGTASLNVTVAASIVLHHF 146


>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
 gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
          Length = 196

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 61/151 (40%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +++D+V DPHN+ AILRS  AF   GI      S         SASG       
Sbjct: 20  RQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHLYYTVSQWPELAKKSSASGKKWVERT 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                +                  S++ +PL     +   A+IL  E  G  P+  E   
Sbjct: 80  KHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSNEHSGTAPELAELVP 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ M G+I++ NVS AAA+ LY   +  
Sbjct: 140 DEVYIPMQGMIQSFNVSVAAALILYHGFSQR 170


>gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 124

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    ++G E  GL    +E    +    M G   +LN + AA V LY 
Sbjct: 62  YDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSASSLNAATAATVMLYE 114


>gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 411

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +K+A++ G E  G   +    A    +L + G   +LN+S AAA+ ++    
Sbjct: 197 PEKLAIVFGTESVGCTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFR 249


>gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 154

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  D    + G E KGL P    +   +   L M   +++LN+SN+AA+ LY    
Sbjct: 87  YTDFVFRDGDFFVFGKETKGLSPNILGQYPDTKMRLPMSNAVRSLNLSNSAAIVLYEGLR 146

Query: 279 HF 280
             
Sbjct: 147 QI 148


>gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1541

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 3/160 (1%)

Query: 124  PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              +   +   L++    VN P+N+G + R+   F+ D ++               S S  
Sbjct: 1376 MRIHDRKRFPLIVAASFVNIPYNLGGLTRTCEIFNADRLVMPDNRVLQSKEYKGVSVSSE 1435

Query: 184  LEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                  I           ++K            +    PL++    ++  L+LG E +G+
Sbjct: 1436 RWMHFDIVKPEDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGI 1495

Query: 241  RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             PK          +   G+ ++LNV  +AA+A+Y      
Sbjct: 1496 SPKVLAVIDRCVEIPQFGVTRSLNVHVSAAIAIYAYVRCR 1535


>gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642]
          Length = 157

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +  +      F  I           +    ++    + G E  GL     +    
Sbjct: 61  HDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
 gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
          Length = 175

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  DA+  + + G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELELDKTRKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS    + ++      
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 153

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL       N G + R+         +           +L ++      H+ +   
Sbjct: 1   MFHVVLVAPEIAPNTGNVARTCAVTGARLHLVRPLGFRLSDRLLKRAGMDYWNHVEWHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
               + L  +    F  +       +           AL+ G+E +GL P+  ++     
Sbjct: 61  DTWDELLAALPEARFCYLEPDG--SQRYTDVTFRPGDALVFGSESRGLPPEFLRQRPGPT 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+++  A+ LY     
Sbjct: 119 LRVPMRPGLRSLNLASTVALVLYEAYRQ 146


>gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 156

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     E +    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +  +   +        +    +    +     I G E  GL    +E    +
Sbjct: 61  HDSIEAFFEVTNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 153

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L   L+       +    ++   +   +       A + G E +GL    +       
Sbjct: 61  PDLQSCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 165

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G I R+         +            L ++     + +   
Sbjct: 1   MHNLNIVLVEPQIPQNTGNISRTCAVTGARLHLVRPLGFEVSDKHLKRAGLDYWDKLDIT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
              +L+D   K     F                   D   LI G E KGL      +   
Sbjct: 61  YYDDLSDFFDKNKDGHFYYFTTKG--LHVHSDIDYPDNSYLIFGREDKGLPESLLHDNPG 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A + M   +++LN+SN+ A+A+Y     
Sbjct: 119 FCARIPMRNELRSLNLSNSVAIAVYEVLRQ 148


>gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
 gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
          Length = 264

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 85/251 (33%), Gaps = 4/251 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+    +++    ++    +  + L +     ++ AL      +         +     
Sbjct: 7   SRSDPQVQRIDDLVRRP--RAATKTLLVEDPEPLTHALGAGLEVLGVYALEGADVGPGLG 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A       ++ V P   +++   E     + +   P  +   D       ++VLD V  
Sbjct: 65  AAARTRGVAIQEVAPAVWNELFRGERKPDVVGVARTPRPTSLADLAGRPGDVVVLDGVRI 124

Query: 144 PHNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
             N+GA +R+     +   ++     +      + +++ G +  +P +  +         
Sbjct: 125 VGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVVRASRGYVFSLPVVLATREEATAALR 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     ++      +     +++AL+ G+E +G   +    A     + M     +
Sbjct: 185 ELDVPLVAFEAAGELGTGDLAALGERLALVFGSEKRGASAELTAGA-RTVSIPMRTAADS 243

Query: 263 LNVSNAAAVAL 273
           LNVS A  +AL
Sbjct: 244 LNVSVAVGIAL 254


>gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays]
 gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays]
 gi|238006410|gb|ACR34240.1| unknown [Zea mays]
          Length = 220

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264
                   +D  +P+         A + G EG GL  K  E      ++    G   +LN
Sbjct: 76  CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135

Query: 265 VSNAAAVALYIT 276
           V+ AA++ L+  
Sbjct: 136 VTVAASIVLHHF 147


>gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264
                   +D  +P+         A + G EG GL  K  E      ++    G   +LN
Sbjct: 76  CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135

Query: 265 VSNAAAVALYIT 276
           V+ AA++ L+  
Sbjct: 136 VTVAASIVLHHF 147


>gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264
                   +D  +P+         A + G EG GL  K  E      ++    G   +LN
Sbjct: 76  CDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTASLN 135

Query: 265 VSNAAAVALYIT 276
           V+ AA++ L+  
Sbjct: 136 VTVAASIVLHHF 147


>gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 153

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           S+L   L+       +    ++   +P  +       A + G E +GL  + +       
Sbjct: 61  SDLQSCLEA--LGHPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147


>gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 264

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 16/233 (6%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
            AL   +R    +   +     L+    +P    + +V    +   +     +   ++  
Sbjct: 30  EALQTGARPSEIVATPEWIEDNLELLKRIPSQVKLNSVTQSVLQASLTTVNPNGVASIFP 89

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES----- 173
             +L    D       ++ LD + DP N+G + R+A+A   D +       P        
Sbjct: 90  LSVLPQPSDQSN---FVLALDRLQDPGNLGTLFRTALAADVDLVWLALGADPLGQKVLRS 146

Query: 174 --------AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                          +        +                +        +  P  +   
Sbjct: 147 SAGAVLKLPFQRLGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPYWELDW 206

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                L+LG EG G+ P  Q+  T    L     +++LNV++AA   L     
Sbjct: 207 TKPTVLVLGNEGDGVHPTIQDCCTHSVSLPHNQQVESLNVASAAVPLLLERLR 259


>gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4]
 gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3]
          Length = 154

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N    L+ M               +P  +        L+ G E +GL     E+     
Sbjct: 61  KNFDAFLEAMAGKRIMACTTKG--SRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+  Y      
Sbjct: 119 RLRIPMAATSRSLNLSNAVAIISYEAWRQL 148


>gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 166

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G            +          G +    ++ +KK            ++ G E  G+ 
Sbjct: 47  GMDYWQHLDVTRYVDYQDFLEKHPGAKIWMATTKAKKCYTDVQFGMDDFIMFGKESAGIP 106

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +   +   + M   I++LN+SN+ A+ LY     
Sbjct: 107 EEILVDNEENCIRIPMGSDIRSLNLSNSVAIVLYEALRQ 145


>gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 168

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G I+R          +        +   + ++      H 
Sbjct: 8   HQDAVMLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HE 65

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                               +    ++  +            AL+ G E +GL  +  E+
Sbjct: 66  FAEVKRWPNFEAFLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIES 125

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M    +++N++NA AV +Y +    
Sbjct: 126 LPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQL 160


>gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54]
 gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila
           LSv54]
          Length = 165

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 4/162 (2%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                       S L +VL     P N G+I R   A +    +       ++   L ++
Sbjct: 1   MTTYRCPTVDYTSHLNIVLVEPEIPPNTGSIARLCGATNAILHLVHPLGFSTDDKHLRRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                + +  +   +    L +            ++               LI G E KG
Sbjct: 61  GLDYWKFVNIVYWESFEAFLSQCDKDNMYFFTTKTEKSYTE--AKFKQGDFLIFGKETKG 118

Query: 240 LRPKTQE-TATSMAHLHM-PGIIKALNVSNAAAVALYITQNH 279
           L     +        L M    I++LN++  A + LY     
Sbjct: 119 LPKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQ 160


>gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 217

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +V   V   HN  A++RS   F    I   +   P          +       
Sbjct: 28  QRTDHLTVVAQDVYQLHNTSAVVRSCDVFGIQNIHVIEEKIPRRIDKEIAMGAQ-KWVDI 86

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S  T                  D  + LE    +   AL  G E  GL  +    A
Sbjct: 87  NRYTSTTTCLKNLKKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMREA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            +   + M G  ++LN+S +AA+ L
Sbjct: 147 DATVKIPMVGFTESLNISVSAAIIL 171


>gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
 gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 154

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R A    C   +        E   L ++      H      
Sbjct: 1   MFHIALYEPQIAPNTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDY--HDLANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +           G +    ++   +P ++        L+ G+E  GL    +      +
Sbjct: 59  RHRNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAIRNGFAPEN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+  Y     
Sbjct: 119 RIRIPMEPDCRSLNLSNSVAIISYEAWRQ 147


>gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi]
          Length = 1716

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 2/160 (1%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKS 179
                L   +   L+++   + +P N+  + R    F+ + ++ + +  ++       A+S
Sbjct: 1551 HPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTIEKVVVSDQAVFAHPHFVAAARS 1610

Query: 180  ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            A   +     +  +                    +     +      ++ A++LGAEG G
Sbjct: 1611 AELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAILLGAEGHG 1670

Query: 240  LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +          +   G+I++LNV    A+ +Y     
Sbjct: 1671 VPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 1710


>gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 154

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDY--HEFAHVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +         +   +    ++  K            ALI G E +GL     ++     
Sbjct: 59  RHANLDAYLNDAKPKRVFACTTKGKAFHSDVSYEKGDALIFGPETRGLPDDYIQSLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +   F
Sbjct: 119 RVRIPMLPDSRSMNLSNAVSVFVYESWRQF 148


>gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 149

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G + R+A A   +  +            L ++      H+ Y+   + 
Sbjct: 4   IVLYEPEIPQNVGNVARTAAATRTELHLVRPFGFRWGDPRLKRAGLDYWPHVRYVLHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  L+ + +        +   ++ L +   +    L+ G E +GL         +   + 
Sbjct: 64  TAFLEALPAGARVWAFSTKA-ERSLYEVRFHPDDYLLFGPETRGLPQAVLARFPA-LRIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LN++ +  VA+Y     
Sbjct: 122 MPGPVRSLNLAVSVGVAVYEVLRQ 145


>gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 157

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + S G + +   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIEACLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa]
 gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa]
          Length = 1224

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1163 HHAFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1220


>gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122]
 gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122]
 gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
           04-02981]
 gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11]
 gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46]
 gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 156

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++  +L ++     E +    
Sbjct: 1   MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             ++    +  +   +        +    +    +     I G E  GL    +E    +
Sbjct: 61  HDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 121 ALRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 275

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 41/280 (14%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT-----------VSAALNNPSRKIFQLL 72
            R +   ++++    +             G              +   L    R    + 
Sbjct: 4   SRRNPLVRRLKFLASR------------EGRQEQSLLLLEGTHLLQEVLRTTHRPKEIVA 51

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
                    D    LP    +  V P  ++  +   +     +L     L   ++  +  
Sbjct: 52  TNFWLERHGDLVQALPAETLIHLVTPSVLEASLTTVSPDGVASLVPLDSLPQAVNQAK-- 109

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKS 179
             ++ LD + DP N+G +LR+A+A   + +       P              +       
Sbjct: 110 -FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVLRASAGAILQLPHERFG 168

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           +SG               +              ++ S  P  Q        L+LG EG G
Sbjct: 169 SSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRKPTVLVLGNEGSG 228

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
           L P+ QE  T    L     +++LNV+ A AV  L   + 
Sbjct: 229 LHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267


>gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 158

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E+      
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYANMQIW 60

Query: 193 SNLTDALQKMHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
            N+ D L  + S G        L++   +       N  +AL++G E +GL    +    
Sbjct: 61  ENIEDCLADLASKGIGLDAIYPLTTKGSETPHTSDLNRPVALLMGPETRGLPEHVRLMFP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L M    ++LN+SNA AV +Y     
Sbjct: 121 QKHWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase CspR
 gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 2/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G I R+  A +    +       ++  +L ++     E + 
Sbjct: 1   MNIVALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVN 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +L +  +      F  I           +    ++    + G E  GL     + 
Sbjct: 61  VVYHDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQN 120

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  L M   +++LN+SN AA+ +Y       
Sbjct: 121 NMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 155


>gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 184

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKRYSPSESAVLAKSASGALEH 186
               L ++LD+V   HN+G+I R+A AF  +    +  T           A  A  A+  
Sbjct: 23  PKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPW 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                     +  +                    +  + +    LI+G E  G+  +  +
Sbjct: 83  RHLDSAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQ 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            A     +   G   +LNVS A  +A+Y  
Sbjct: 143 YADYCLEIPQYGTKHSLNVSVATGIAIYDL 172


>gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
 gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
          Length = 168

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +             + +     +    +S +++   Q       AL+ G E  GL  +  
Sbjct: 66  YHDLANTRVHATWQECLEQIPGRIFAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEIL 125

Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    ++   + M    ++LN++N+AA+ LY      
Sbjct: 126 DHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRSL 162


>gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 220

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     + ++ V   HN  A++RS   F    +   +     +      +         
Sbjct: 28  NRTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIE-QRFGKRIDKEIALGAQKWVDI 86

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +                     ++   ++    +   AL  G E  GL P+  E A
Sbjct: 87  NRFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSALFFGTEKDGLSPEILEKA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ +
Sbjct: 147 DGFLKIPMVGFTESLNISVSAAIII 171


>gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           N1-067]
 gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           S4-171]
          Length = 169

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETAT- 249
             ++ D  +K H   F  I                 K    I G E  GL  +  +    
Sbjct: 61  YDSMDDFFEKNHGGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDELLQANEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   I++LN+SN AAV  Y       
Sbjct: 121 HCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152


>gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 156

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDY--HEFASIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   +         +   L++       +    D   L+ G E +GL     ++  A  
Sbjct: 59  RHHDYSAFLDGEKPTRLFALTTKGTPAHSEVTYRDGDYLLFGPETRGLPSTILDSLPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148


>gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038]
          Length = 213

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 75/207 (36%), Gaps = 7/207 (3%)

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--- 134
             R        +      V    + K  G E  H G+            +     Q    
Sbjct: 4   RFREALKWMAANRKAYHVVEEDELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAK 62

Query: 135 --LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++ L+ V +PHN+G I+R+   F  +G++  +  +  ES    ++A G  EHI  I  
Sbjct: 63  DCVLALEEVGNPHNLGGIMRTCAHFGINGVLL-QDPAMLESGAAVRTAEGGAEHIKAINA 121

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    L      G+  +  SS     L +     K+ L+LG E  GL     +      
Sbjct: 122 DDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSV 181

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            +   G +++LNVS A  + L      
Sbjct: 182 SIGGTGRVESLNVSVATGILLAEWWRQ 208


>gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 33/93 (35%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                +  ++               +   + +   ++        A+I G E KG   + 
Sbjct: 101 WLDAEMWENSSDCIATLRKRGYRIAVTHIAPNTVSIQDMDWTIPTAVIFGNEYKGASEEA 160

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     + M G++++ NVS AA + ++   
Sbjct: 161 VKQSDIRCCIPMGGMVESFNVSVAAGIIMHHAA 193


>gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
 gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
          Length = 167

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60

Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L            +   +   L++                L+ G E +GL    
Sbjct: 61  HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPATV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   A     + M    +++N+SNA +V +Y      
Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158


>gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 220

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 8/178 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +  + ++ +      H+             +   R     +  + V   HN  A++RS  
Sbjct: 2   IDKKLLEHLETYLTDHR-------LQRFYKVLEQRTKHFTVATEDVYQLHNTSAVIRSCD 54

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F    +   +  +           +           +                      
Sbjct: 55  VFGIQEVNIVEEVNAKRIDREIAMGAQ-KWVDLNRYHTVKDAIQDVKQKGYQVVATTPHA 113

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   L       K     G E +GL  +  + A     + M G  ++LN+S +AA+ L
Sbjct: 114 NDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEADVFLKIPMVGFTESLNISVSAAIIL 171


>gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis
           DSM 16069]
          Length = 153

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++      H      ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIKPLGFEIDDKKMRRAGLDY--HEWAQVKTHE 61

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
                  +    +  GLS+ +K    Q    D   L+ G E +GL      +    +  +
Sbjct: 62  NYQEFLNNEQPKRLFGLSTKAKHYFHQIAYQDGDYLMFGPETRGLPNHILNDIGEQLLRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN+SN  A+  Y     
Sbjct: 122 PMRPDSRSLNLSNTVAIVTYEVLRQ 146


>gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas
           ingrahamii 37]
          Length = 154

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N GAI+R      C   +        +   + ++      H      
Sbjct: 1   MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDY--HELTHVY 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +           G +    ++ +     Q        L+ G E +GL  +  +      
Sbjct: 59  RHKNYNDFLQAVSGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KLRIPMRAESRSMNLSNAVSVFVYEAWRQL 148


>gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           entomophila L48]
          Length = 153

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   L+       +    ++    P  +       A + G E +GL  +  ++  A  
Sbjct: 61  ESLAGCLES--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO]
          Length = 295

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 57/282 (20%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG ++V AAL NPSR     L     +               + V    ++ +    
Sbjct: 8   EYVYGTNSVYAALLNPSRNCHSRLLYHGTIPSKILQXVDEMKVTTELVDKHRLNLLTNYG 67

Query: 109 AVH---------------------------------QGLALETAPLLSPTLDAVRNSQLL 135
             +                                          L   T    +   L 
Sbjct: 68  VHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLG 127

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------------ 183
           + LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGA            
Sbjct: 128 LYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKP 187

Query: 184 --LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                                ++   +     + S   L        + L++G E +G+R
Sbjct: 188 LEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVR 247

Query: 242 PKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
              +  +     +   G          I+ +LNVS A A+ +
Sbjct: 248 TNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289


>gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
 gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
          Length = 165

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 7/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ VA +    +            L ++     EH+     
Sbjct: 1   MLNIVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVTTY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            +  D ++K            S +              ++ G E  G+  +         
Sbjct: 61  IDYRDFMEKNPGAKIYMATTKSPNLYTD--VKYEPDCYIMFGKESAGIPEEIL--CHHKK 116

Query: 252 --AHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M G I++LN+ N+ A+ LY     
Sbjct: 117 DSIRIPMIGDIRSLNLGNSVAIVLYEALRQ 146


>gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia
           enterocolitica W22703]
          Length = 167

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHH 60

Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L   +        +   +   L++                L+ G E +GL    
Sbjct: 61  HDYQAFLDSENLDGAQSAGTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   A     + M    +++N+SNA +V +Y      
Sbjct: 121 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQL 158


>gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
 gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
          Length = 152

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                     L  A  + H    +    S+ + +           AL+ G E  GL P+ 
Sbjct: 47  YWHLVTLEQQLDIAHFRHHHPNARLRLFSAVAPRSYLDADFRPGDALVFGKESVGLDPEL 106

Query: 245 QETA-TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  +   G +++LN++NA ++ LY     
Sbjct: 107 LARMPDDVFGIPTLGPVRSLNLANAVSIVLYEALRQ 142


>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
          Length = 366

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 31/231 (13%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQ 133
               A      PV     Q +D +  +  VHQG+ +E +PL                  Q
Sbjct: 94  ELLRAAEARDIPVLRPRRQKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQ 152

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP----SESAVLAKSASGALEHIPY 189
           L +VL+ + DP N+GA+LRSA     D IIT+ R         +  L    S A      
Sbjct: 153 LWLVLERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAME 212

Query: 190 IRISNL---------------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           +                          +   G +    S        + + +    L+LG
Sbjct: 213 VMDVFSTDDLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLG 272

Query: 235 AEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHFA 281
            EG GL    Q +   +  +     +P  +++LNVS AA + L+   +   
Sbjct: 273 NEGSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRK 323


>gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 217

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + + +    V   HN  A++RS   F    I   +   P          +     + 
Sbjct: 28  QRTNHITVATQDVYQLHNTSAVIRSCDVFGIQNIHVIEEKFPKRIDREIAMGAQKWVSVN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +  +   +         DS    + +I   K AL  G E  GL  +  + A
Sbjct: 88  RHASAKECISHVREMGYQIVATSPHDDSLHLGDFDI-TKKSALFFGTERYGLSQEIIDEA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ L
Sbjct: 147 DCTLKIPMYGFTESLNISVSAAIIL 171


>gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 169

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETAT- 249
             ++ +  +K H   F  I                 K    I G E  GL  +  +    
Sbjct: 61  YDSMDEFFEKNHGGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLPDELLQANEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   I++LN+SN AAV  Y       
Sbjct: 121 HCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152


>gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 152

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L + L   +   N G ILR A        I      P     L ++    LE     
Sbjct: 2   NCRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALRRAGMDYLEMAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +             + + LS+ +  P  +        L+ G E  G+     + A +
Sbjct: 62  RHVDWDAFEDWRKVHAKRLVLLSTKATAPYTEFAFARGDILLFGRESAGVPDPIHQAADA 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G  +++NV+ + A+         
Sbjct: 122 RLTIPMQGGARSINVALSVAMVAGEAVRQL 151


>gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 155

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++      P N G  +R      C+  +        + +      +G   H      
Sbjct: 1   MFRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLKRAGLDYHDLASVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +             +    ++ +              L+ G E  GL  +       T 
Sbjct: 59  VHENLEAAWAAVGPARVFAFTAHATVSYADIAYRPGDVLLFGPEPTGLSAEVLADPHVTE 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNAAA+  Y     
Sbjct: 119 RVRIPMLPGRRSLNLSNAAALVTYEAWRQ 147


>gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
 gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
          Length = 157

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + +   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 172

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 L+ G E +GL P   +   A     + M    +++N+SNA +V +Y      
Sbjct: 106 YQINDYLLFGPETRGLPPNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 163


>gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
 gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
          Length = 156

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276
           P  +    D   L+ G E +GL     ++   T    L M    ++LN+SNA AV LY  
Sbjct: 85  PHSEACFQDGDVLLFGPETRGLPDPILKSLPPTQRLRLPMVADSRSLNLSNAVAVTLYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRQL 148


>gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 91]
 gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei NCTC 13177]
 gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
 gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
          Length = 156

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +    ++                 + GAE +GL P   +      
Sbjct: 61  RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRSFEPGDWFVFGAETRGLAPALVDRFAPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 153

 Score = 77.2 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L   L+       +    ++   +   +       A + G E +GL    +       
Sbjct: 61  PDLQSCLEA--LGQSRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
 gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
          Length = 156

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           ++    +Q +     +    ++   + +           + GAE +GL    +E      
Sbjct: 61  ASWDALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDYFVFGAETRGLSDAVREQFAPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ AVA++     
Sbjct: 121 RLRLPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
 gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii
           ACICU]
 gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2]
 gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + +   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 153

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L D L+       +    ++   +   +       A + G E +GL  + +    A  
Sbjct: 61  PDLQDCLEA--LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEEVRNALPAER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVTVYEAWRQL 148


>gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 161

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E  +L ++     EH    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLLQRAGLDYHEHAAVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L        +    ++   +PL +        L+ G E +GL P  ++   A  
Sbjct: 61  ASWEALLVAEQPDPQRLFAFTTRGSRPLTEVPWQAGDWLVFGCETRGLDPTLRDRFPAAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AVA++     
Sbjct: 121 RVRLPMRAGQRSLNLSNAVAVAVFEAWRQ 149


>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
 gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
          Length = 178

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A++ G E KG+     +       +   G   +LNVS  A + ++    
Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172


>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
 gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
          Length = 178

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A++ G E KG+     +       +   G   +LNVS  A + ++    
Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172


>gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
 gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
          Length = 175

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLR 241
             + +  ++N  DA+  +   G+    +       +       K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDRLELDKTKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS    + ++      
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 168

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I+R+ VA      I        +   + ++    ++ +     
Sbjct: 1   MNHIVLVHPAIPQNTGNIMRTCVATHSKLHIIKPMGFSLDDKHMKRAGLDYIKDLEMEIY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            N  + + +           S            +    ++ G E  G+     +      
Sbjct: 61  ENWEEFVTQNPGDYHFFTRYSKLCYTDQNYVS-DQDQYILFGHEHDGIPHDILKDHLDEC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G  ++LN+SN  A+ +Y       
Sbjct: 120 VRIPMDGNARSLNLSNCVAIGIYEVLRQQN 149


>gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
          Length = 164

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 1/156 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
               N  +++ L     P N G I R  V  +    I +K      S  + ++     EH
Sbjct: 5   KINDNFNIIIALYRPEIPANTGNIGRLCVGLNIPLHIVSKPSFIISSKEVKRAGLDYWEH 64

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  ++  N    L+  +S   + + ++   K   ++   ++   L+ G E  GLR    E
Sbjct: 65  LQLVKHENENTFLEYCNSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRESTGLRESLWE 124

Query: 247 T-ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  ++ M   I+++NVSN AA+  Y    H  
Sbjct: 125 NDLENSVYIPMSDNIRSINVSNTAAIVAYEAYRHII 160


>gi|209550362|ref|YP_002282279.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536118|gb|ACI56053.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 153

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G ILR A        +            L +S    +      
Sbjct: 1   MTDLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  N         + G + I  S+ +              L+ G E  G+     E A +
Sbjct: 61  RHVNWDRFEAWRATTGRRLILASTKAADRYTDLAFRSDDILLFGRESAGVPDHVHERADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 121 RILIPMVDGQRSINVAVSAAMIVGEAMRQ 149


>gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893]
 gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893]
          Length = 154

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        E   + ++     E+      
Sbjct: 1   MLNVVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTLEDKQMRRAGLDYSEYATVTVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           S+    L+         +       +        +   L+ G E +GL    +E      
Sbjct: 61  SDYQAFLESEQPSRLFGLTTKG--SRGYHDVEYQNGDYLMFGPETRGLPQDIREAMPEHH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN  A+ +Y     F
Sbjct: 119 RLRVPMRPESRSLNLSNTVALVVYEAWRQF 148


>gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           W619]
          Length = 153

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   L+       +    ++    P  +       A + G E +GL  +  ++  A  
Sbjct: 61  ESLARCLEN--LGNPRLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RLRLPMMPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 151

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 1/143 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G + R   A      +        E   L ++      H+      
Sbjct: 1   MHVVLFQPEIPPNTGNVARLCAAMQVSLHLIEPLGFKLEDRYLKRAGLDYWPHVDMAVWP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   ++   +     +   +     L +    +  +L+ G E  GL P+    +     
Sbjct: 61  DLDAYIRNSGAGRRLVLTS-ARRGAALHRFEFTENDSLVFGRETSGLPPEVIGLSPHHVR 119

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + + G ++++N+S AA + L+  
Sbjct: 120 IPIKGEVRSINLSTAAGIVLFQA 142


>gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 180

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V+ + L++VLD++   +N+G++ R+  AF  + +      +   +  + K+A GA 
Sbjct: 16  DFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALGAE 75

Query: 185 EHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           + + +                 +    +  + +S    E + K  K A+ILG E  G+  
Sbjct: 76  DSVNWKYSPITLRIVEELHQKGYQIIAVEQAEESIMLDEFQSKYSKQAIILGNEVHGIDQ 135

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      +   +   G   +LNVS  A + ++    +
Sbjct: 136 EVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKN 172


>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
 gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
          Length = 175

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  DA+  +   G+    +       +  E    K+ K A+++G E KG++
Sbjct: 76  FTVDWKYVDNAVDAVDNLRKAGYMVYSVEQAEGSIMLDELELDKSKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +     +   G   +LNVS    + ++      
Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 166

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 1/98 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                              +   +    ++ ++    +        ++ G E  G+  + 
Sbjct: 50  YWKDLDVTVYENYDDFLRRNPNAKIYMATTKARHVYTEVSYEPDCFIMFGKESAGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             E   +   + M G I++LN+SN+ A+ LY       
Sbjct: 110 LLENKETSIRIPMIGDIRSLNLSNSVAIVLYEALRQQN 147


>gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379]
 gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM
           2379]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
                         +   LS+ + +            ++ G E KGL  +  E  + +  
Sbjct: 65  WQRLEQVWQEFPRGRFFYLSTKAGRSYLAADFRPGDFIVFGKETKGLPAEILEWNSETAI 124

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279
            + MP   +++LN+S +A + LY     
Sbjct: 125 TIPMPANAVRSLNLSTSAGIVLYEALRQ 152


>gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 154

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        +   + ++     E+    R 
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           ++    L        +   L++   +   +        L+ G+E KG+    + + +   
Sbjct: 61  ASWQHFLDAERPAPDRLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRMSFSPER 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 SLRLPMRPDQRSLNLSNAVAVTVFEAWRQ 149


>gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
 gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
          Length = 176

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181
                    L++VLD V   HN+G++ RS  AF  + +           +E    A    
Sbjct: 16  EFKEAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGGE 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            ++E   + +       L+    + +         K    +  +  K A++ G E KG++
Sbjct: 76  NSVEWKYFSQTEKAIRQLRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVVFGNEVKGVK 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +   S   +   G   +LNVS  A V ++      
Sbjct: 136 QTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQL 174


>gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 179

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +    + +G E  G+ P+      ++A +   G + +LNV+ A AVA Y  +  
Sbjct: 112 HEADLSGATCIAVGNEDHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQ 170


>gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 182

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +    + +G E  G+ P+      ++A +   G + +LNV+ A AVA Y  +  
Sbjct: 115 HEADLSGATCIAVGNEDHGISPQALGMCDAVAFIPQLGRVGSLNVATALAVACYEVRRQ 173


>gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
 gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
          Length = 160

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 5   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 64

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +    ++                 + GAE +GL P   +      
Sbjct: 65  RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ 124

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 125 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 153


>gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei DM98]
 gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 14]
 gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 9]
 gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei B7210]
 gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 7894]
 gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 112]
 gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei BCC215]
 gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
 gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 23344]
 gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710b]
 gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           SAVP1]
 gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10229]
 gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10247]
 gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
          Length = 156

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P + A + ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    +        +    ++                 + GAE +GL P   +      
Sbjct: 61  RDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 219

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 48/101 (47%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA++     +  +  DA++     G++ +    +   PLE        A+ILG E +G+ 
Sbjct: 96  GAVKWTHLQQWRSTADAVRDAKKRGYRVLTTVFEGGHPLEHYDWTVPTAVILGNEREGVS 155

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++ A    ++ M G  ++LNVS A+++ ++       +
Sbjct: 156 EEAKKLADGGVYVSMNGFTESLNVSVASSLVMHHAVQDRTR 196


>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 152

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             Q        L+ G E  GL     ++   +   + M  I ++LN+SN+ A+ LY    
Sbjct: 85  YHQVSYPQDSWLVFGRESSGLPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEALR 144

Query: 279 H 279
            
Sbjct: 145 Q 145


>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
 gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
          Length = 175

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  DA+  + + G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +     +   G   +LNVS    + ++      
Sbjct: 136 QEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFKKL 174


>gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 151

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL  +       T    + M    ++LN+SNAAA+  Y     
Sbjct: 87  YQPGDVLLFGPEPTGLSEEVLADPHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 143


>gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 175

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  +   G+    +       +  E    +  K A+++G E KG++
Sbjct: 76  FTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++       
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175


>gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1600

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +     +K  LILG E +G+     +       +   GII++LNV  +AA+ ++     
Sbjct: 1537 QDYQFPEKTLLILGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQ 1595


>gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
 gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+      + + G + I   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCRADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens
           16/4]
          Length = 165

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P N G I R+  A      +            + ++     + +   R 
Sbjct: 1   MLNIILHEPEIPANTGNIGRTCCATGTRLHLIEPLGFVLTDKTVKRAGMDYWDKLEVFRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  D   K            +                ++ G E  G+  +   +   + 
Sbjct: 61  DDWDDFKAKNPDAKIYMATTKAKRTHTE--VNYEPDCYIMFGKESAGIPEEILVDNEENC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN+ A+ LY     
Sbjct: 119 VRIPMGHDIRSLNLSNSVAIILYEALRQ 146


>gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 156

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I+R          +        +   L ++      H       
Sbjct: 1   MHIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDY--HEFAAIRH 58

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           + +           +   L++                L+ G E +GL  +      A   
Sbjct: 59  HASYEAFTASEAPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPARVLNALPAQQK 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    +++N+SNA +V +Y      
Sbjct: 119 IRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147


>gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens]
          Length = 164

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 2/141 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +  +  ++P N  A LR+  AF    +   K     E+ + A   +     +     
Sbjct: 23  HLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDTL--EARMHAAMGAQKWLTLREHDA 80

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                       +      L   S+   + +   +  AL+ G E  G+    +  A    
Sbjct: 81  PGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYALVFGNEETGISEDLRARADVRV 140

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
           HL M G+ ++LN+S +    L
Sbjct: 141 HLPMRGLAESLNLSVSVGACL 161


>gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus]
          Length = 1629

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +K  L+LG E +G+     +       +   G++++LNV  + A+ ++      
Sbjct: 1554 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQR 1611


>gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 217

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R +   + ++ +   HN  A++RS   F    +   +              +       
Sbjct: 28  NRTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKSIDKEIAMGAQ-KWVDI 86

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S         +           ++   LE    +   AL  G E  GL  +  + A
Sbjct: 87  NTFDSVTNCIESLKNKGYQIIATTPHENDCLLEDFDISKPSALFFGTERDGLSEEILKQA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ +
Sbjct: 147 DGFLKIPMVGFTESLNISVSAAIII 171


>gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 234

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   + ++L+ +  PHN  A+LRS  +F    +   +  +           S     +
Sbjct: 30  QQRTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTITQSVTIGSDRWLTL 89

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPK 243
                 ++ +  + +     +   +++ +       I+    N K+AL+ G+E  GL   
Sbjct: 90  YRYNEQSINNTEECLKRLKNEGYVIAATTPYKEHITIEELSVNTKVALMFGSEINGLSEY 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  A     + M G  ++ N+S +AA+ LY   +   K
Sbjct: 150 AKNNADVSVKIPMVGFSESFNISVSAALCLYNLMSRLKK 188


>gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
 gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
          Length = 165

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ S L + L     P N G I R+  AF     +        +   L ++      H+
Sbjct: 3   HLKPSPLSVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHV 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++       +            D    L+         L+ G E  GL    ++ 
Sbjct: 63  NLSVHTDFKAFKTSLAKPSRVIGCSRRD-GVALQDFSFEQGDVLLFGREDTGLPEPVRDQ 121

Query: 248 ATSMAHLHMP--------GIIKALNVSNAAAVALYIT 276
              +  + MP        G +++LN+S A A+A +  
Sbjct: 122 CDDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158


>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
 gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
          Length = 224

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 21/219 (9%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---------VR 130
           +   +       P+  +    ++    K   HQG+ L+ +PL    +D           +
Sbjct: 7   KEIAEKANELKIPIIAIKNNIMESFS-KNKPHQGVILDCSPLTVLNIDFLKPFKANKNTK 65

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VLD + DP N+G I+RS   F+ DGI+ + + S   +   +K +SGA+E+    
Sbjct: 66  RYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKCSSGAVENYLVH 125

Query: 191 RISNLT----------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +  ++             +         +   SS +   +     +    LILG EG G+
Sbjct: 126 KSESINGFLLSSKKNGWNIVATSVDDNSSEDSSSPANYNITDVKLDQPTILILGNEGFGV 185

Query: 241 RPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQN 278
                        +      I +LNVS +  + ++   N
Sbjct: 186 HKSIINQCDKTIRISGGNKKIDSLNVSVSTGILIHSLLN 224


>gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 156

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R   A      +        +   L ++       +     
Sbjct: 1   MMHIVLVEPEIPGNTGNIARLCAATGASLHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            ++ + L          +   +                LI G E  GL    +       
Sbjct: 61  DSVEEVLAAYPDSPRFLLTTHAHKSYSR--VHYGPDSLLIFGKESAGLPEAFRQAHEEEC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N+ ++ LY     
Sbjct: 119 VRIPMVSEARSLNLANSVSIVLYEALRQ 146


>gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + I   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCLADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|170751018|ref|YP_001757278.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657540|gb|ACB26595.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 176

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               + L + L   + P N G +LR A        I            L +S    L+H+
Sbjct: 23  HKAGAMLRLALYQPDIPQNTGTMLRMAACLGLAVEIVEPAGFDVSDRHLRRSGLDYLDHV 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              R  +           G + +  ++    P           L++G E  G+       
Sbjct: 83  AITRHRSFAAFAAWRAEAGIRLVLATTAGAVPYTDFAFRPDDCLMVGRESAGVPEAVHAA 142

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A +   + +   +++LNV+ AAA+        
Sbjct: 143 ADARIVVPIRPGLRSLNVAVAAAMIAGEALRQ 174


>gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
          Length = 170

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G I+R+  A      I            + ++     +H+ +   
Sbjct: 1   MNHVVLVHPAIPQNTGNIMRTCAATHTPLHIIKPTGFKLNDPRMKRAVMDYFDHLTFKVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            N  +  ++           S       + + + +   L  G E  G+     +      
Sbjct: 61  ENFEEFEKENPGIYHFFTRYSKKVYSEDDFKQEGEH-YLFFGHEHDGIPHDILKKYIDDC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G  ++LN+SN  A+ +Y     
Sbjct: 120 VRIPMYGDSRSLNLSNTVAIGVYEALRQ 147


>gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
 gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
          Length = 218

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 1/147 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + ++ V   HN  A+LRS   F    +   +     +        +       +
Sbjct: 28  RTRHFTVAVEDVYQMHNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAMGAQ-KWVDIH 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                                    +  + L       K A   G E +GL  +    A 
Sbjct: 87  RYNDTQQCIDTLKKQGYRIIATTPHEDSQYLHDFDITQKAAFFFGKEKEGLSEEVLSQAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + M G  ++LN+S +AA+ +   
Sbjct: 147 EFLKIPMVGFTESLNISVSAAITIQEV 173


>gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium]
          Length = 220

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + K+A+  G E +G+     E +     + M G+I++LN+   + + LY       +
Sbjct: 147 HYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTTSGIVLYEVTKQRRE 203


>gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605]
 gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9605]
          Length = 163

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALY 274
                   L+ G E  GL    ++   S+  + MP        G +++LN+S A A+  Y
Sbjct: 95  FTFQRGDVLLFGREDTGLPESVRDACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154

Query: 275 ITQNHF 280
           +     
Sbjct: 155 VAGQQL 160


>gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3]
 gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3]
          Length = 290

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 12/262 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYG---VHTVSAALNNPS-RKIFQLLATKNALAR 80
                    +   ++   T +       G   +  ++AA           +L  KN L+ 
Sbjct: 26  PADPRIAAFRDIRER-DLTGRQGRFIAEGTVVLRMLAAAHKAGGAFAAESILILKNRLSG 84

Query: 81  LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLL 135
           +       P   PV       +D IVG   +H+G+      +   TLD +      S L+
Sbjct: 85  VADILADFPPDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDITLDGLTDALPASSLV 143

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V   +++  N+GA+ R+A AF  D +   +           + + G++  +PY R    
Sbjct: 144 LVGCGISNHDNLGAMFRNAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGA 203

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+++   GF    LS + +  +    ++D++AL++G EG+GL           A + 
Sbjct: 204 VQMLERLSQAGFAIWSLSPNGETEIRDIPRSDRMALVIGTEGEGLPQSVLSRF-HTARIA 262

Query: 256 MPGIIKALNVSNAAAVALYITQ 277
               + +LN   A+ +ALY   
Sbjct: 263 QSPQLDSLNAGTASGLALYQMA 284


>gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
 gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
          Length = 169

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R+ +A      +        +   L ++    ++ + Y   
Sbjct: 1   MLHLVLYEPEIPQNTGNMMRTCMATGTRLHLIQPLGFSLDEQHLKRAGMDYVKELEYTIY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250
            +  +  Q+  S  +  +              K +     ILG E  G+           
Sbjct: 61  KSWEEFTQQNPSDNYYYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPKTILSRQLEH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN AA+ LY      
Sbjct: 121 CMRLPMVANARSLNLSNCAAIILYEALRQL 150


>gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942]
 gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A +    +       ++  +L ++     E +  + 
Sbjct: 1   MALHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
             +L +  +      F  I           +    ++    + G E  GL     E    
Sbjct: 61  HDSLEELFEAYQKGQFFLITKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPKDLIEKNMD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L M   +++LN+SN AA+ +Y       
Sbjct: 121 RCLRLPMTEHVRSLNLSNTAAILVYEALRQQN 152


>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
 gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
          Length = 220

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     + ++ V   HN  A++RS   F    +   ++             +       
Sbjct: 30  NRTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKSIDKEIAMGAE-KWVDI 88

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S                     +    L +       AL  G E  GL  +  + A
Sbjct: 89  NRFSSIQDCITNLKQKGYQIIATTPHNDSCLLHEFDITQPSALFFGTERDGLSEEVMQQA 148

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G  ++LN+S +AA+ +    N  
Sbjct: 149 DGFLKIPMVGYTESLNISVSAAIIIQDITNRL 180


>gi|15236590|ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
 gi|332658520|gb|AEE83920.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
          Length = 1850

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 K  L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1791 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1847


>gi|297520579|ref|ZP_06938965.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50]
          Length = 86

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             D   L+ G E +GL     +   A     + M    +++N+SNA +V +Y      
Sbjct: 20  YQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQL 77


>gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 176

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD+V   HN+G++ RS  AF  + +      +   SA + K+A GA + + +   
Sbjct: 24  PLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSAEIHKTALGAEDSVSWKYY 83

Query: 193 SNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +     + L++   + +    +             + + A++LG E KG++ +    + 
Sbjct: 84  KSTLDAVEELKQQDYFVYSIEQVEGSQNMAKINLDHSKRYAVVLGNEVKGVQQEVVNASD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           S   +   G   +LNVS  A + ++      
Sbjct: 144 SCLEIPQLGTKHSLNVSVTAGIVVWEFAKQL 174


>gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
 gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
          Length = 272

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 91/259 (35%), Gaps = 4/259 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            +    +++    + S   S  +   +  V  +  ++      I    +  +       D
Sbjct: 13  PSDPAVQRIIDVTKPS--RSNIKTTLIEDVEPLMHSIAAGVEFIEVYGSDSSPFPSELLD 70

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV+ +    ++++   E   +   +   P  +   D       ++VLD V   
Sbjct: 71  LCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIV 130

Query: 145 HNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            NIGAI+R+     +   I+     +      L +++ G +  +P +             
Sbjct: 131 GNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRD 190

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S        +       E     D++AL+ G+E  G     +E +++   + M    ++L
Sbjct: 191 SGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESL 250

Query: 264 NVSNAAAVALYITQ-NHFA 281
           NVS +  +AL+     + A
Sbjct: 251 NVSVSLGIALHERIDRNLA 269


>gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 157

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + G E +GL  +  +         + M    ++LN+SNAAAV +Y     
Sbjct: 91  FRPGDTFLFGPETRGLPMEILDGLPEDRRLRIPMVPGSRSLNLSNAAAVMVYEAWRQ 147


>gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
 gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
          Length = 199

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
                    A ILG EG GL  +  +    + ++ M G    +LNV+ A ++  +   
Sbjct: 97  YPHPFRRSTAFILGNEGTGLSQRQIDICDYLVYIPMYGSGTASLNVAIAGSILFHHFA 154


>gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus]
 gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581]
 gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19]
 gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021]
 gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849]
 gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200]
 gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1]
 gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1]
 gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2]
 gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2]
 gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1]
 gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1]
 gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2]
 gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2]
 gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2]
 gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2]
 gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2]
 gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2]
 gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2]
 gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2]
 gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2]
 gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2]
 gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358]
 gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1]
 gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2]
 gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1]
 gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2]
 gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1]
 gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2]
 gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1]
 gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2]
 gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95]
 gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902]
 gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001]
 gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB]
          Length = 269

 Score = 76.8 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 91/259 (35%), Gaps = 4/259 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            +    +++    + S   S  +   +  V  +  ++      I    +  +       D
Sbjct: 10  PSDPAVQRIIDVTKPS--RSNIKTTLIEDVEPLMHSIAAGVEFIEVYGSDSSPFPSELLD 67

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV+ +    ++++   E   +   +   P  +   D       ++VLD V   
Sbjct: 68  LCGRQNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIV 127

Query: 145 HNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            NIGAI+R+     +   I+     +      L +++ G +  +P +             
Sbjct: 128 GNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFIRD 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S        +       E     D++AL+ G+E  G     +E +++   + M    ++L
Sbjct: 188 SGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESL 247

Query: 264 NVSNAAAVALYITQ-NHFA 281
           NVS +  +AL+     + A
Sbjct: 248 NVSVSLGIALHERIDRNLA 266


>gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 151

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
 gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato K40]
 gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
          Length = 151

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 299

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 2/180 (1%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D+ + ++       L    L    L   +   L+++   + +P N+  + R    F+ + 
Sbjct: 114 DENIQRKVTPWWNGLVYNELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFAIEK 173

Query: 162 IITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           ++ + +  ++       A+SA   +     +  +                    +     
Sbjct: 174 VVVSDQAVFAHPHFVAAARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVS 233

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      ++ A++LGAEG G+  +          +   G+I++LNV    A+ +Y     
Sbjct: 234 IASYRFPERAAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQ 293


>gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           frigidimarina NCIMB 400]
          Length = 154

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAA 269
            ++   +P  Q    +   L+ G E +GL     +         + M    ++LN+SN+ 
Sbjct: 78  CTTKGSRPHTQIAFQENDVLLFGPETRGLPMDIIDATPLAQRLRIPMTANSRSLNLSNSV 137

Query: 270 AVALYITQNHF 280
           A+  Y      
Sbjct: 138 AIISYEAWRQL 148


>gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
 gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
          Length = 220

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
              +   A + G EG GL  K  +      ++    G   +LNV+ AA++ L+  
Sbjct: 93  HPFHRSTAFLFGNEGTGLSQKECDICDFFVYIPQYGGGTASLNVTVAASIVLHHF 147


>gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14]
          Length = 164

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ + K            ++ G E  G+  +   E       + M G I++LN+ N+
Sbjct: 76  YMATTKAHKVYTDVEYEPDCYIMFGKESAGIPEEILVEHEEDCMRIPMNGDIRSLNLGNS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIVLYEALRQ 146


>gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 270

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 5/240 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY        +    +            +  AL         L                
Sbjct: 16  ADYSHRTDVALRKAEGAGHGIYLAESALVLERALKAGHAPRSVLAL--GGTVDEALALVG 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV T P + + ++ G       +A    P L      + +++ ++VL+ V DP N+
Sbjct: 74  DRDVPVFTGPGELLAELTGYVLHRGVVASLDRPALPSVASLLADARRVVVLEDVVDPTNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++ T R +        + + G +  +P+ R     +    +   GF
Sbjct: 134 GAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAGF 193

Query: 208 QTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                                ++K+ ++LG+EG GL  +   +A ++  + M   I +LN
Sbjct: 194 HVAALALTPDAVSIRDFPAEDHEKLVIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDSLN 253


>gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina
           ymp]
          Length = 154

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++L   L        +    ++   +P  +       A + G E +GL  + +       
Sbjct: 61  ADLQSCLDS--LGQPRLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV +Y     
Sbjct: 119 RVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147


>gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-3-3Ab]
          Length = 269

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 24/72 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +         ++   + +     AL+ G E +GL  +          +       +LN+
Sbjct: 96  PYPPEWQIQSPRQAFPELLAAGPAALVFGPEDRGLSNEELALCHRQIQIPTDPAYPSLNL 155

Query: 266 SNAAAVALYITQ 277
           + A  +  Y  +
Sbjct: 156 AQAVGICCYELR 167


>gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 156

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P E A L ++     E       
Sbjct: 1   MFNVVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFARVKVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            N    LQ  H        L++       +   +     + G+E KG+  + + +  A +
Sbjct: 61  KNWAQFLQDEHPNPEHLFALTTKGSGNFHEGQYSPNDYFVFGSETKGITDEVRNSIPAHN 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  A+ +Y     
Sbjct: 121 RMRLAMQDSSRSLNLSNTVAIVVYEAWRQ 149


>gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
 gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
          Length = 158

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +V  H   P N G  +R A    C+  +        E   L ++      H      
Sbjct: 1   MFRIVFFHPEIPGNTGNAIRLAANTGCELHLIEPLGFSLEDRYLRRAGLDY--HDLAHIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250
            +                  ++ + +        +   L+ G E  GL  +    E  T 
Sbjct: 59  VHRDLDAAWQALDPVHVYAFTTQAHRRHTDVDYAEGDVLLFGPESVGLPDEVLADERITD 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN++N AA+A+Y     
Sbjct: 119 QVRLPMLPTSRSLNLTNTAAIAVYEAWRQ 147


>gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
 gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
          Length = 153

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANTGCSLHLIDPLGFELDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++L   L+       +    ++   +P          A + G E +GL  + +E+     
Sbjct: 61  ADLPSCLES--LGRPRLFAFTTKGSQPYHSVAYRRGDAFLFGPESRGLPQEVRESLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AVA+Y      
Sbjct: 119 RLRLPMRSACRSLNLSNTVAVAVYEAWRQL 148


>gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa]
 gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 9/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A S    +        + A L ++      ++      
Sbjct: 82  LQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHD 141

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +  +                 +        +        L+ G+E  GL P+      S 
Sbjct: 142 SWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSE 201

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                M  + M    ++ LN+S +  +ALY       
Sbjct: 202 MFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLN 238


>gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae]
          Length = 147

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R              R++        + A G   H       +   A     
Sbjct: 1   PPNTGNIIRLCANTGFSLAYHLSRWASPWDDKRLRRA-GLDYHEFTAVQRHADYAAFVAS 59

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
           +   +   L++            D   L+ G E +GL     +         + M    +
Sbjct: 60  AQPQRLFALTTKGTPAHSAVSYQDGDFLMFGPETRGLPASILDALPPEQKIRIPMMPDSR 119

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++N+SNA +V +Y      
Sbjct: 120 SMNLSNAVSVVVYEAWRQL 138


>gi|297800328|ref|XP_002868048.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313884|gb|EFH44307.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1852

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 K  L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1792 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1848


>gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 279

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 90/247 (36%), Gaps = 11/247 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R  +            +  AL    +    LLA +   A  D  A  P
Sbjct: 19  DYVGLTDVALRMRVEAAEGLYMAESSTVLERALRAGHQPRSVLLAPRWVPAVEDMLAASP 78

Query: 89  HP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDH 140
                PV       ++ I G       LA    P L    D          ++ + VL+ 
Sbjct: 79  VDGVVPVHVAEDPVLEAITGFHVHRGALAAMHRPALPAVADVLAAARGGAGARRVAVLED 138

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI    D + 
Sbjct: 139 LVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPDGIA 198

Query: 201 KMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +   GF T                    +++AL+LGAEG GL+P+T         + M 
Sbjct: 199 TLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVRIPMA 258

Query: 258 GIIKALN 264
           G + +LN
Sbjct: 259 GGVDSLN 265


>gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 156

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N   I  +         +       ++  ++ ++     E +    
Sbjct: 1   MAINVVLYQPEIPANTANIALTCAVTDTALHLIRPIGFSTDEKMIKRAGLDYWESVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-S 250
             +L +   K H   +        +    +      +   + G E  GL     E     
Sbjct: 61  YDSLEEFFSKNHGEFYYIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPEDLPERYHGH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN AA+ +Y     
Sbjct: 121 FLRIPMNDNVRSLNLSNTAAILVYEALRQ 149


>gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
 gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
          Length = 186

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            LI+G E  G+  +  + A     +   G   +LNVS A  +A+Y  
Sbjct: 126 VLIVGNEVHGVSDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIYDL 172


>gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 161

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR          I              ++    L+H+ + R  + 
Sbjct: 3   IALYQPDIPQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLDWRRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +       + G++ + L++                L+LG E  G+     + A +   + 
Sbjct: 63  SAFEAWRATQGYRLLLLTTKGATSYLDISYRPDDILLLGRESVGVPATVADAADARLRIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LNV+ A+A+A       
Sbjct: 123 LKPGMRSLNVAIASAMAAGEALRQ 146


>gi|116253233|ref|YP_769071.1| aminotransferase/methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257881|emb|CAK08979.1| putative aminotransferase/methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 153

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G ILR A        +            L ++    +      
Sbjct: 1   MTSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +         + G + I  S+ + +            L+ G E  G+  +  ETA +
Sbjct: 61  RHVSWDRFEAWRLTTGRRLILASTKAAERYTDLSFRPDDVLLFGRESAGVPDQVHETADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 121 RVLIPMVEGQRSINVAVSAAMIVGEAMRQ 149


>gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 168

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        E   + ++     E+   +  
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRRMRRAGLDYHEYARVLCH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    L+       +   L++ S + +           + GAE +GL    +       
Sbjct: 61  ADWAAFLRTARPDASRMFALTTQSLQWVHATCFRPGDWFVFGAETRGLAAALRASFAPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 CLRLPMIEGQRSLNLSNAVAVTVFEAWRQ 149


>gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 157

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        +   + ++      H      
Sbjct: 1   MLNIVLYQPEIPPNTGNVIRLCANTGYKLHLIEPLGFDLDEKKVRRAGLDY--HELARVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++   K   +        L+ G E +GL  +  E   A  
Sbjct: 59  RHKDWQAFVDSQEIGKVYALTTKGSKVPSEAKFEANDVLVFGPETRGLPIEFIEALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  A+ +Y +    
Sbjct: 119 RLRLPMQPNSRSLNLSNTVAIMVYESWRQL 148


>gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                          +    ++  +            AL+ G E +GL  +  E+     
Sbjct: 59  RWPNFEAFLEAVAPTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N++NA AV +Y +    
Sbjct: 119 RLRIPMLPQSRSMNLANAVAVFVYESWRQL 148


>gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 176

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T   V    L+++LD++   HN+GA  R+A AF  + II            + K+A GA 
Sbjct: 17  TFKKVEKIPLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGAT 76

Query: 185 EHIPYIRISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +   ++       L+            +           K+ K ALILG E +G+ 
Sbjct: 77  ESVDWSHEADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +          +   G   +LNVS    + ++       
Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWEFAKALK 176


>gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica
           PV-4]
          Length = 252

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 106 NGPVAIVFGRESNGLSNDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEAR 157


>gi|296535160|ref|ZP_06897385.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264512|gb|EFH10912.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 77

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  I L++G E +GL   +     +   L   G +++LNVS AAAV ++  
Sbjct: 18  DRPIVLVMGNEEQGLPEASIAACAARVTLPGSGAVESLNVSVAAAVLMHAL 68


>gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 183

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                  L +++ +  P +   + R+ + +     IT  +   +    +  S + A    
Sbjct: 22  CANTGCALHLIEPLGFPIDHAKMRRAGLDYHEFTAITVHKNWAAFLDSMRASMAAASGSY 81

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P    S    +  +   +  +  GLS+   K            L+ G E  GL    Q++
Sbjct: 82  PQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLPGDCLVFGRETSGLPDDVQDS 141

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +  L M    ++LN+SNA AV ++     
Sbjct: 142 LGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQ 175


>gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 186

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + L++G+E  G  P   E A  + ++   G + + NV+ A A+AL   +  
Sbjct: 117 HAAELGGDVCLVVGSEDHGCSPALLEAADGVCYIPQVGRVGSFNVAVATAIALAEARRR 175


>gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 252

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LDGPVAIVFGRENNGLSNEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEAR 157


>gi|221056833|ref|XP_002259554.1| rna methyltransferase [Plasmodium knowlesi strain H]
 gi|193809626|emb|CAQ40327.1| rna methyltransferase, putative [Plasmodium knowlesi strain H]
          Length = 333

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 85/272 (31%), Gaps = 21/272 (7%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA-----LNNPSRKIFQL 71
           D+ Y  + +  +  K +    +K     +  + F      V  +     L +     F++
Sbjct: 69  DNEYLSISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTITHLASNHNLTFEV 122

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VGKEAVHQGLALETAPLLSPTLDA 128
           + +K+   +   D        +      T++ I     K              L  ++  
Sbjct: 123 ILSKS---KSLLDHFKEKCSKLYYTDIDTLNYIFRDTLKVNKEARNDAVAVVKLPKSVQP 179

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--- 185
               + L+  D +   +N+G IL +A +   D +          +  + +  +G+     
Sbjct: 180 KEPIKFLLAFDRIRYAYNLGKILNTAASMGVDYLFYVHNTVDPFNHKVIEVTNGSHFQIP 239

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           ++    +                     +      E   +   + LILG E  G      
Sbjct: 240 YLFGSYVELRQFCDSHKLLPVVAHTNGVNPVHILKETSEQGKGVCLILGNESTGPHADVL 299

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     L M  +  +LNV  AA++ ++  +
Sbjct: 300 NFA-KPISLPMHEMTNSLNVYVAASILIHYLK 330


>gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
 gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
          Length = 169

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILR-SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            L +VL     P N G I+R    + +   +I    +S  E  +         +    + 
Sbjct: 1   MLHVVLYEPEIPQNTGNIMRTCMASNTVLHLIEPLGFSLDEQHLKRAGMDYVKDLDYRVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
            +      Q      +        +    +       I LILG E  G+  +  +     
Sbjct: 61  KNWEEFTSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIPKEILKHQLDH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN AA+ +Y      
Sbjct: 121 CMRLPMVAKARSLNLSNCAAIIVYEVLRQL 150


>gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
 gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
          Length = 163

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ SK+        +   ++ G E  G+  +   +   +   + M   I++LN++N+
Sbjct: 76  YMATTKSKQKYTDVNYEEDAYIMFGKESAGIPEEILLDYKETAVRIPMFPEIRSLNLANS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIVLYEALRQ 146


>gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 157

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          I        +   L ++      H     +
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDY--HEFTAVL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A         +   L++            D   L+ G E +GL     +   A  
Sbjct: 59  RHPDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y   +  
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWHQL 148


>gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 157

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E    +  
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMLIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + S G + +   ++           N  +AL++G E +GL    +      
Sbjct: 61  DNIELCLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRMMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana
           ATCC 700345]
          Length = 254

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            N  +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LNGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
 gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
          Length = 254

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LTGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           halifaxensis HAW-EB4]
          Length = 251

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LTGPVAIVFGRENNGLTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
 gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
          Length = 158

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  S   + L       N G I+R      C+  +        E   L ++     +   
Sbjct: 1   MPASMFHIALYEPEIAPNTGNIIRLCANNGCELHLIEPLGFDLEEKKLRRAGLDYSDMTR 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R  +    L+ M       +  ++   +P  +        L+ G E +GL      + 
Sbjct: 61  VTRHKDFPSFLEAMAGRRI--LACTTKGSRPHTELEYQAGDVLLFGPESRGLPMDIINSV 118

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M    ++LN+SNA A+  Y     
Sbjct: 119 PTEQRLRIPMVESSRSLNLSNAVAIISYEAWRQ 151


>gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           DM4]
          Length = 269

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 5/241 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G  T+    +  +R   + +           D       PV       +  +
Sbjct: 29  RQGRFIVEGEVTLRLLFSGRARFAAESVLLAPERWPGFADLLRGDGPPVYLAGKDVMSAV 88

Query: 105 VG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            G      V         P     +       L++ L  + +  N+G + R+A AF  D 
Sbjct: 89  AGFPIHRGVLAVGLRGQEPPPESVIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +               + ++GA   +P+ R  +    L          + L+    + L+
Sbjct: 149 VWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETLD 208

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHF 280
           +     +  L+LG EG GL       A     + M     +LNV+ A A+AL+       
Sbjct: 209 RLDPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRRL 267

Query: 281 A 281
           A
Sbjct: 268 A 268


>gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893]
 gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893]
          Length = 284

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  + H+ K
Sbjct: 122 VALVFGRENHGLSNEELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLK 175


>gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
 gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
          Length = 165

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G ++R A        +        +   L ++    ++H+ + R S+ 
Sbjct: 3   LVLFEPDIPQNTGTLMRLAAGLGVALDLIEPCGFLLDDRRLRRAGMDYIDHLDWTRHSSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                         +   +       +    D+  +++G E  G+  +  + A +   + 
Sbjct: 63  AAYCATPRDGRLVLLTTRAAIPYTDFRFAPGDR--ILVGRESAGVPDEVHDAADARLLIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LNV+ +AA+ L      
Sbjct: 121 MMPPARSLNVAVSAAMVLGEALRQ 144


>gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 260

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 9/157 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A +    +        + A + ++       +     S
Sbjct: 79  LQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVRAHS 138

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +  +  +         + I  +    +            L+ G+E  GL P+        
Sbjct: 139 SWAEFQEYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEALSDCKHE 198

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                   + M    ++ LN+S +  +ALY       
Sbjct: 199 PYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 235


>gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes]
          Length = 158

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        ++  L ++     E+    R 
Sbjct: 1   MFQIILFQPEIPPNTGNIIRLCANAGCGLHLIEPLGFELDNKRLRRAGLDYHEYTNVRRY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L   L+       +    ++   +   +       A + G E +GL  + +       
Sbjct: 61  PDLRSCLES--LAQPRLFAFTTKGSRAFHEVDYQRGDAFLFGPESRGLPGRVRNALLPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M G  ++LN+SN  A+A+Y      
Sbjct: 119 RLRLPMRGGCRSLNLSNTVAIAVYEAWRQL 148


>gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 205

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + + AL++G E KG++    + +     +   G   +LNVS  A + ++      
Sbjct: 144 HPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRL 202


>gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 180

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+ +L  + DP N+GA  R A       II T +      + +A    GA   I
Sbjct: 23  QRPEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTIAGVGRGAHRRI 82

Query: 188 PYIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P+  + +  +AL ++   G+       ++   P       D++ L++G E  G+  +T  
Sbjct: 83  PWRYVEHADEALVELKGMGYMACAIEVAEGAVPYYSLKYPDRVCLVVGHEYHGVTTRTLS 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  ++ M G IK+LNV  A AV  +   + 
Sbjct: 143 VCDNAVYIPMYGKIKSLNVHVALAVVAFHVLHQ 175


>gi|118374625|ref|XP_001020500.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila]
 gi|89302267|gb|EAS00255.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
            SB210]
          Length = 3004

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 2/227 (0%)

Query: 54   VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
             + +    N     I+QL   ++A  + D    L     ++ +P   + ++   +     
Sbjct: 1869 ENVIEEIKNVCMNLIYQLKEHEDAPPKKDDLWRLKTQEFIQDIPIPDLSEVTNFQRKIDV 1928

Query: 114  LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE- 172
            +  E   + +      +   +++V   +    N G + R++  F    ++   +    E 
Sbjct: 1929 VQNELDQIEAEKKKRRKEKDIIVVASLLEKIPNFGHLTRTSEIFGVSSLVIPNKAILEEE 1988

Query: 173  -SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
                ++ +A   L          +   + K            +   K ++ +   DK  L
Sbjct: 1989 GFKAISVTAEKWLPIQEVKEKDLMAFLILKKKLGYKIVGLEQTSKSKMIQHQEFPDKCIL 2048

Query: 232  ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +LG E  G+  +  E       +   G +++LNV  +A + ++   N
Sbjct: 2049 LLGREKTGIPLEYIEILDECVEIPQFGQVRSLNVHVSAVICIWEFVN 2095


>gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 159

 Score = 76.4 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E+      
Sbjct: 1   MIHVVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYARMKIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            N+   L+ + S G     +   + K          N  +AL++G E +GL    +    
Sbjct: 61  DNIEQCLESLKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPESVRFMFP 120

Query: 250 SM--AHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L M    ++LN+SNA AV +Y     
Sbjct: 121 QKNWIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 225

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 S+ +    +    GF   G +     PL     +     + G E  GL      
Sbjct: 94  RWMNLHSHSSLDTFQKSMKGFVIYGATPHGNTPLHALSLDRPCCFLFGNEKNGLTDAALN 153

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             TS   + M G  ++ N+S AAA+ L+  
Sbjct: 154 ICTSHFTIPMYGFCESFNLSVAAAITLHHA 183


>gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae
           BGR1]
          Length = 156

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R          +      P E A L ++     E+      
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGARLHLVEPLGFPLEDAKLRRAGLDYHEYARMHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L        +    ++         +       + GAE +GL            
Sbjct: 61  RDWEALLAAEQPDPARMFAFTTRGSGRFHDRVFRPGDWFVFGAETRGLGEAMLARFPDEQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 148

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 4/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R+      D ++         S          L++   + +S +
Sbjct: 3   IILFQPQIPQNAGNIVRTCAVTGTDLMMVHP---LGFSTHDRWLKRAGLDYWEGVSVSFI 59

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +    + +        SS +     +        LI G+E  GL    QE        +
Sbjct: 60  ENLENYLENQQASFYFFSSKATTLYTEVSYAADSFLIFGSETSGLPSIFQEKWGNRFVKI 119

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   ++ LN++ +A +ALY     
Sbjct: 120 PMKPKVRCLNLATSAGIALYEAWRQ 144


>gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           SL3/3]
          Length = 168

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L +VL     P N G + R+    +C   +        +   L  +      ++
Sbjct: 1   MMDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                  L D   + +   +      + + +        D   L+ G E  GL      E
Sbjct: 61  DITYYDGLADFFARNNGPYYYFT---TKAPQRYTDVQYPDGAYLVFGREDAGLPEALLAE 117

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M    ++LN+SN+ AV +Y     
Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112]
 gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112]
 gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 155

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   Q   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
          Length = 168

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L +VL     P N G + R+    +C   +        +   L  +      ++
Sbjct: 1   MMDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                  L D   + +   +      + + +        D   L+ G E  GL      E
Sbjct: 61  DITYYDGLADFFARNNGPYYYFT---TKAPQRYTDVQYPDGAYLVFGREDAGLPEALLVE 117

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M    ++LN+SN+ AV +Y     
Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1]
          Length = 157

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        E   L ++      H      
Sbjct: 1   MLHIVLYQPEIPPNTGNVIRLCANTGYHLHLIEPLGFELEDKKLRRAGLDY--HEFTRLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +       L++       +    +   L+ G E +GL  +  E      
Sbjct: 59  RYPDFQAFVNQNEIGTIYALTTKGSHTHSEASFAENDVLVFGPETRGLPAEFIEALPPAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y +    
Sbjct: 119 RLRLPMQANSRSLNLSNTVAVMVYESWRQL 148


>gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411]
 gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411]
          Length = 162

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 3/161 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +  L+        +VL   + P N G I R  VA +    +            L ++
Sbjct: 1   MQRNFLLNDNHKCNFHIVLFQPDIPPNTGNIARLCVATNSTLHLIKPLGFSLNDKRLKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                E++      +L+D L K  +  F      +            +   LI G+E +G
Sbjct: 61  GLDYWENLKLEMHDSLSDFLNKYGNRKFFLASTKAVKPYFE--VYFEEGDFLIFGSETQG 118

Query: 240 LRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     E       ++ M   +++LN++++ AV LY     
Sbjct: 119 LPNDFIEANLDKAINIPMTDKVRSLNLADSVAVVLYEAIRQ 159


>gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 154

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPG--IIKALNVSNAAAV 271
            +K             L+ G E  GL  +           + M      ++LN+SN+  +
Sbjct: 80  HAKAFYSDIEYTGDAYLLFGRETAGLPDEIHSAYPDHRFRIPMRNHERARSLNLSNSVNI 139

Query: 272 ALYITQNHF 280
            LY      
Sbjct: 140 VLYEALRQL 148


>gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 152

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    +      +           ++  K             L+ G E +GL    
Sbjct: 50  YWDKLSYQVHENFTSVENLLQTHPIYIATTRGKNYYYDIEYPRDSVLVFGKETEGLPDWI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   +   + M    ++LN+SN+ AV L+     
Sbjct: 110 INKYYENSIRIPMAPDFRSLNLSNSVAVVLFEALRQ 145


>gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
 gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
          Length = 155

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L ++      P N GA +R +        +    +   ++ +          +     
Sbjct: 3   HVLHVIFFEPRIPGNSGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLAN 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TAT 249
                   + +     +    ++ + +   +       AL+ G E  GL  +  E    +
Sbjct: 59  TRVHASWQECLEQVPGRIFAFTAHTSQLYTEVEWRGDDALLFGPEPTGLPEEIMEDPRVS 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
               + M    ++LN++N+AAV LY    
Sbjct: 119 GRVRIPMMEGNRSLNLANSAAVGLYEAWR 147


>gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 151

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  PDLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 275

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 82/280 (29%), Gaps = 41/280 (14%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT-----------VSAALNNPSRKIFQLL 72
            R +   ++++                  G              +   L    R    + 
Sbjct: 4   SRRNPLVRRLKFLASS------------EGRQEQALLLLEGTHLLQEVLRTTHRPKEIVA 51

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
                    D    LP    +  V P  ++  +   +     +L     L   ++  +  
Sbjct: 52  TNFWLERHGDLVQALPAETLIHQVTPSVLEASLTTVSPDGVASLVPLDSLPQAVNQAK-- 109

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-------------ESAVLAKS 179
             ++ LD + DP N+G +LR+A+A   + +       P              +       
Sbjct: 110 -FVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVLRASAGAILQLPYQRFG 168

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           +SG               +              ++ S  P  Q        L+LG EG G
Sbjct: 169 SSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKPTVLVLGNEGSG 228

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
           L P+ Q   T    L     +++LNV+ A AV  L   + 
Sbjct: 229 LHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267


>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
 gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
          Length = 181

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD V   +N+G++ RS  AF    I      +    A + K+A GA 
Sbjct: 17  EFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAE 76

Query: 185 EHIPYIRI---SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E I +            LQ    + +        +K       +  K A++LG E KG+ 
Sbjct: 77  ESIAWRYFATAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLERRQKYAVVLGNEVKGVH 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + +     +   G   +LNVS AA + ++      
Sbjct: 137 QSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQL 175


>gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 156

 Score = 76.4 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S+L +V D+   P+N G  +R++        +        E   L ++      H    
Sbjct: 1   MSKLHIVFDNPVIPNNTGNAIRTSAVTGASLHLIEPLGFNFEDKNLKRAGLDY--HDLAD 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
              +             +    SS +          D   L+ G E  GL  +  E    
Sbjct: 59  VHIHSNFDACMNALPHSRVFAFSSHATTWYTDIEYKDGDVLLFGTEPTGLPTEHLEHPRI 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T    + M    +++N+SN A++A+Y      
Sbjct: 119 TQQVRIPMLPARRSMNLSNCASIAIYEAWRQL 150


>gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 157

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MIHVVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIW 60

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
            N+   L  + + G + +   ++           N  +AL++G E +GL  + +      
Sbjct: 61  DNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPERVRLMFPQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SNA AV +Y     
Sbjct: 121 QWIRLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
 gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +    +      +    S  +++            ++ G E  GL    
Sbjct: 55  YWEVIDVRRWESLQQLEEAFPDGRWWYTSKKAERSHVGADFQPGDFIVFGKETAGLPADL 114

Query: 245 QETA-TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                     + +    +++LN+S AA + LY     
Sbjct: 115 LARNPAHCIRIPIFSPRVRSLNLSTAAGIVLYEALRQ 151


>gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii
           SP-6]
          Length = 156

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G ++R A    C+  +        +  +L ++     E+ P  R 
Sbjct: 1   MFRIVLVHPEIPPNTGNVIRLAANTGCELHLIEPLGFSMDDRLLRRAGLDYHEYAPVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           +     L             ++   + L + +      L+ G E  GL    +E      
Sbjct: 61  AGWAAFLADQRPDPATLYAFTTRGSRSLAEVVWPADAWLVFGCETSGLPEDVREQIAPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AVA++     
Sbjct: 121 RVRLPMRAGQRSLNLSNAVAVAVFDAWRQ 149


>gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 156

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L     P N G I R       + I+  K         L ++     E++   +
Sbjct: 1   MTLKVALFEPEIPQNTGNIARLCAGTDVELILIGKLGFSLSDKYLKRAGLDYWEYVTLHK 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
           +  L     +     ++   LS   +K   +   +D I  I G E  GL    ++     
Sbjct: 61  VDTLEQFFSQFPDNIYEYAFLSKFGEKYYTEIPLSDNIITIFGNESSGLPEMIRDRFMDR 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M   I++ N+SN+ A+ LY     
Sbjct: 121 LYRIPMNDKIRSQNLSNSVAIVLYDILRR 149


>gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
 gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
          Length = 167

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E       
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHH 60

Query: 193 SNLTDALQKMH--------SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L            +   +   L++                L+ G E +GL  + 
Sbjct: 61  HDYQAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPARV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   A     + M    +++N+SNA +V +Y      
Sbjct: 121 LDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQL 158


>gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217]
 gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217]
          Length = 217

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V   HN  A++RS  AF    I   +              +        
Sbjct: 28  RTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEELKGKRIDREIAMGAQ-KWTSVK 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S      +               +   LE    +   AL  G+E  GL     E A 
Sbjct: 87  RYDSTKNALAKLKSEGYQIVATTPHHTAHKLEDFKLDKPTALFFGSEKDGLTETVIEAAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++   G  ++LN+S  AA+ L       
Sbjct: 147 EYIYIPTFGFTQSLNISVCAAILLQELTQRL 177


>gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 157

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        E   L ++      H       + 
Sbjct: 7   IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDY--HDLAEVSIHE 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253
                       +    ++  K            AL+ G E  GL  +T      T +  
Sbjct: 65  NLERCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNAAAVA Y      
Sbjct: 125 IPMLPGRRSMNLSNAAAVAAYEVWRQL 151


>gi|261752835|ref|ZP_05996544.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261742588|gb|EEY30514.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 171

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 1/164 (0%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  D     +L + L   + P N G ILR A        +            L ++
Sbjct: 1   MQPCGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               LE     R  +         + G + + LS+ +  P       +   L+ G E  G
Sbjct: 61  GMDYLEQAALTRHPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
           +     + A     + M    ++LN + + A+          +K
Sbjct: 121 VPEAIHDNADERLLIPMVRSARSLNRAVSVAMTTGEALRQIRSK 164


>gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 163

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 9/151 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N GAI R+ VA      +        +   + ++     +H+ Y   
Sbjct: 1   MLNIVLVEPEIPYNTGAIGRTCVALGAALHLVGPMGFSIDEKQVRRAGLDYWQHLNYTFY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETA 248
            N+ D   K            +       +     +  +  G E  GL  +      E  
Sbjct: 61  ENIVDFTAKHPDIKPFYATTKA--LNTYAEVSYPSETWIFFGKESAGLPEEMLLPFPERC 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN+ A+  Y     
Sbjct: 119 ---IRIPMYPQIRSLNLSNSVAIIAYEVARQ 146


>gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 168

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I RS VA      +        +S  L ++     EH+ +  + 
Sbjct: 19  LNVVLYQPEIPQNTGNIGRSCVAIGAKLWLIRPLGFQLDSRYLKRAGLDYWEHLDWEAVD 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           +      K          L+    K            L+ G+E  GL    + E A    
Sbjct: 79  SW--DEVKRRLPNSNVFCLTKFGSKHPWDVSFAPGDILLFGSESSGLPVSIRGEYAGQCV 136

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            L M   +++LN+++ A   +Y     F
Sbjct: 137 RLPMRTQVRSLNLASTANAIMYEAVRQF 164


>gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
 gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis]
          Length = 1744

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q     K  L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1683 QFAFPKKTVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1740


>gi|110740266|dbj|BAF02030.1| hypothetical protein [Arabidopsis thaliana]
          Length = 253

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K  L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 194 YQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 250


>gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 151

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRVFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
 gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
          Length = 182

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           N   A+I+G E KG++    + + +   +   G   +LNVS  A + ++      
Sbjct: 125 NSHYAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQL 179


>gi|301096892|ref|XP_002897542.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107002|gb|EEY65054.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 76.0 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 574 PLEEVRPQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670


>gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia
           R551-3]
 gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia
           R551-3]
          Length = 159

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 4/154 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                Q  ++L     P N G ++R          +        E   L ++     E+ 
Sbjct: 1   MNAAPQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYS 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L  AL ++       +   +      +    +D  A + G E +GL     + 
Sbjct: 61  RLQVHPDLDTALARIAPKRLFALSTRA--SVRYDSVAFDDGDAFLFGPESRGLPQDVLDA 118

Query: 248 A-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L M    ++LN+SN  AV +Y     
Sbjct: 119 LPDGHRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 154

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +V      P N G  +R A    C+  +          A + ++      H      
Sbjct: 1   MFRIVYFQPCIPPNTGNAIRIAANTGCELHLIEPLGFTMTDAQVRRAGLDY--HEMANVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +   A         +    ++ + +            L+ G E  GL  +       T 
Sbjct: 59  VHPDLATAWEKLAPTRVFAFTAHATRFYTDVSYEPGDVLLFGPEPTGLPDEVLADPHVTD 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N++NA +VALY     
Sbjct: 119 QLRIPMLEGRRSMNLANATSVALYEAWRQ 147


>gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 184

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            LI+G E  G+  +  + A     +   G   +LNVS A  +A+Y  
Sbjct: 126 VLIVGNEVHGISDEVIQYADDCLEIPQHGTKHSLNVSVATGIAIYDL 172


>gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 304

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 36/284 (12%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D + + S + +         +   G   V   L      +  ++  +  L  L       
Sbjct: 21  DVRDLNSSDSRPDLPGGKGLVIAEGT-LVVPRLLASRYPVRSIVGFRPKLDALAEQLQAE 79

Query: 89  -------------HPFPVKTVPPQTIDKIVGKE-------AVHQGLALETAPLLSPTLDA 128
                         P  V  V  + + ++ G +       A ++        +L      
Sbjct: 80  GFFTSDAHRPPEYQPPQVFEVSREVLREVAGFDMHRGLVAAANRVAERGVEEVLDLVEAT 139

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              ++++ VL+ V D  NIGA+ R+A     D ++     +        + + G +   P
Sbjct: 140 NDGAKVVAVLEGVGDHENIGAMFRNAAGLGVDAVLFGAATADPLYRRSVRVSMGHVLRTP 199

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---------------EIKNDKIALIL 233
           + R+   T   Q+      +            E+               E +  +IA+++
Sbjct: 200 FARLEGKTTTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIMV 259

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GAEG GL       A   A + M     +LNV+ AAA+  Y  +
Sbjct: 260 GAEGPGLTEHAMRAADIRAAIPMASGTDSLNVATAAAIGFYAAR 303


>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 177

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD+V   HN+G++LRS  AF  + +      +   SA + K+A GA + + +   
Sbjct: 24  PLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYF 83

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETAT 249
           +  +DA+ ++H+ G +   +   +   + Q ++     + A++LG E KG++    +   
Sbjct: 84  AETSDAVDELHANGTKVFAVEQVANATMLQSLETKGGERYAVVLGNEVKGVQQTVVDRCD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +   G   +LNVS AA + ++      
Sbjct: 144 GCLEIPQFGTKHSLNVSVAAGIVVWEFAKKI 174


>gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 156

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I+R+  A      +        +   L +      +      
Sbjct: 1   MSLNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +  +K  +  +      +            +   ++ G E KGL     +    +
Sbjct: 61  YDSFEELQEKYPNSKYFFSTTKAKQSHSD--VKYEENCFIVFGKETKGLPETLLKANMDT 118

Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNHF 280
              + M      ++LN+SN+ A+ +Y      
Sbjct: 119 CIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150


>gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 160

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 6/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + A + ++     ++      
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVH 60

Query: 193 SNLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +                 +   L++    P            + G+E KGL P  +E+ 
Sbjct: 61  HDWQAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKGLAPALRESF 120

Query: 249 T--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  L M    ++LN+SN  AV +Y     
Sbjct: 121 PPVQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153


>gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
 gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
          Length = 157

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        +   L ++     E     + 
Sbjct: 1   MLHIVLYQPEIPPNTGNVIRLCANTGYQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           +N    + +  + G     L++   +   +    +   L+ G E +GL  +  E      
Sbjct: 61  ANWDAFIAQNENIGTLYA-LTTKGSRTHSEAEFKENDVLVFGPETRGLPAEFIEALPKPQ 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AV +Y +    
Sbjct: 120 RLRLPMQADSRSLNLSNTVAVMVYESWRQL 149


>gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
          Length = 176

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
              +   + L+++LD++   +NIG++ R++ AF  + I      +      + ++A GA 
Sbjct: 16  EFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR 241
           + + +    +    ++++     +   +       +  E + +K    AL+ G E KG++
Sbjct: 76  DSVVWEYCEDTLALVKELQENDVKVAAIEQAENAMMLNEFQPEKQHTYALVFGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +  +  +   G   +LN+S +A V L+      
Sbjct: 136 QEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFRKL 174


>gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 174

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           ++K+ LI G E  G+  +       + H+ M G   ++NV+ +  +ALY     F K
Sbjct: 114 DEKLVLIAGNERHGISAEVLNLCDELYHIEMFGENSSMNVAQSVGIALYEITKAFNK 170


>gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 161

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V+     P N G + R   A      +        E   L ++       +      
Sbjct: 1   MHIVMVEPEIPGNTGNVARLCAANHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVHE 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
           N+ D + K        +   S  ++        +   L  G E KGL     +E      
Sbjct: 61  NVADVMAKYAGHAMYYLTTKS--RQCYADISFTEDDLLFFGKETKGLPESMLKEHPERCF 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M    ++LN+SN+ A+  Y      
Sbjct: 119 RIPMIEAARSLNLSNSVAIVAYEALRQL 146


>gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549]
 gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 155

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   Q   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 170

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R   A  C   +        E   L ++       +      
Sbjct: 12  MHIVLVEPEIPGNTGNIARLCAATGCHLHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYD 71

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           ++ + L+K        +   + S              LI G E  GL      E   S  
Sbjct: 72  SVYEVLEKYKDNPKYFLTTKAHSSYAD--VQYAQDSLLIFGKETAGLPETLLHEYPESCI 129

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SN+ A+  Y     
Sbjct: 130 RIPMIEDARSLNLSNSVAIVAYEALRQ 156


>gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 286

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 23/259 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY ++     + R  +Q           ++ A+          L     L  +      
Sbjct: 14  ADYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLEEMRPVIAS 72

Query: 88  PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----- 133
                        PV   P + ++ I G       LA    P L+   + + +++     
Sbjct: 73  AAGCAGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPALAGVPELLSSARGGAGA 132

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI
Sbjct: 133 RRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI 192

Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  +               T     +          + ++A++LG EG GL  +T 
Sbjct: 193 ERWPAMDELHAQGFTVAALALSDTSVALDEFAASAACTGVDSRVAVVLGTEGDGLSHRTI 252

Query: 246 ETATSMAHLHMPGIIKALN 264
             A  +  + M G + +LN
Sbjct: 253 TAADEVVRIPMAGGVDSLN 271


>gi|68067975|ref|XP_675907.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56495350|emb|CAI05586.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 188

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
               G ++   +  +  L + L   +   +     +          +KN   A + G EG
Sbjct: 24  MGTHGYIKIRYFTNMIELKEYLNNNNILLYGCEITNQSIPITKHPFVKNKDTAFLFGNEG 83

Query: 238 KGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVAL 273
            G+  +  +    + ++   G  I +LNVS + A+ L
Sbjct: 84  TGISEQIIKMCDQIIYIPQYGNGIASLNVSVSCAIIL 120


>gi|327188344|gb|EGE55561.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 154

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +   + L   +   N G ILR A        +            L +S    +      
Sbjct: 2   MTDFRLALYQPDIAGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +         + G + I  S+ +              L+LG E  G+     E A +
Sbjct: 62  RHVSWDRFEAWRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADA 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 122 RILIPMVEGQRSINVAVSAAMIVGEAMRQ 150


>gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae FF5]
 gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae 642]
 gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
 gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 151

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|190892787|ref|YP_001979329.1| tRNA/rRNA aminotransferase/methyltransferase [Rhizobium etli CIAT
           652]
 gi|190698066|gb|ACE92151.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 153

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +   + L   +   N G ILR A        +            L +S    +      
Sbjct: 1   MTDFRLALYQPDIAGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +         + G + I  S+ +              L+LG E  G+     E A +
Sbjct: 61  RHVSWDRFEAWRATTGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++NV+ +AA+ +      
Sbjct: 121 RILIPMVEGQRSINVAVSAAMIVGEAMRQ 149


>gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           fluorescens Pf-5]
          Length = 151

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++L   L+       +    ++   +P       +  A + G E +GL     +      
Sbjct: 61  ADLASCLES--LGHPRLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPADVLDALPGEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AVA+Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148


>gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM
           9941]
 gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM
           9941]
          Length = 223

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +       G   ++ A    +    ++      + R                     
Sbjct: 15  YREEERLFLAEGERLLAEA----TVPPLRVFTEPEQIRR--------------------- 49

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              V       G       L     + +   +++++L+ V DP N+G ++RSA AF    
Sbjct: 50  ---VSTLKTPAGPVGVFPYLDVSPEELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGAGV 106

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +   R            ++        +       A  ++       +  ++       
Sbjct: 107 AL--SRGCADLYNPKTVRSTMGSLFRVPVARELDPLAFLELARGAGFGLAAATPGGGEPP 164

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +    + + +G+EG GL P           +       +LN + AA++ LY     
Sbjct: 165 GSMPGGNLVVAVGSEGAGLSPGVVRACGVRVSIP--SRAPSLNAAVAASILLYEAYRR 220


>gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
 gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
          Length = 169

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +L +  +K     F  I          ++    N     + G E  GL  +  +    
Sbjct: 61  YDSLDEFFEKNAGGEFFYITKFGRHVYSDIDYSDPNKNYFFVFGKETTGLPDELLQNNEE 120

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   I++LN+SN AA+  Y     
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 153

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            Q + +    L+ G E  GL     +       + +   +++LN+S AA + LY  
Sbjct: 87  HQFMFSADDTLVFGRETAGLPKDLMDQYEHKVRIPIYSTVRSLNLSTAAGIILYQA 142


>gi|281211908|gb|EFA86070.1| tRNA/rRNA methyltransferase SpoU family protein [Polysphondylium
            pallidum PN500]
          Length = 1626

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 K  L+LG E  G+  +  E       +   G+ ++LNV  +A++ ++     
Sbjct: 1564 FQFPQKCLLLLGQEQNGIPAEYLELVDYCIEIPQFGVTRSLNVHVSASIVIWEYSQQ 1620


>gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 155

 Score = 76.0 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P NIG I+R          +        E   L ++      H      
Sbjct: 1   MISIALYEPEIPPNIGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   Q   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|301095544|ref|XP_002896872.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108622|gb|EEY66674.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670


>gi|301096908|ref|XP_002897550.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107010|gb|EEY65062.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 1346

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                  L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 1179 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 1238

Query: 188  PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
            P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 1239 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 1298

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +       +   G++++LNV  + A+ L+     
Sbjct: 1299 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 1335


>gi|301096906|ref|XP_002897549.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107009|gb|EEY65061.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 705

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 538 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 597

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 598 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 657

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 658 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 694


>gi|301096904|ref|XP_002897548.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107008|gb|EEY65060.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670


>gi|301096902|ref|XP_002897547.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107007|gb|EEY65059.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 769

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 602 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 661

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 662 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 721

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 722 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 758


>gi|301096900|ref|XP_002897546.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107006|gb|EEY65058.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 634 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 670


>gi|301096890|ref|XP_002897541.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107001|gb|EEY65053.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 647

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 480 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 539

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 540 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 599

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 600 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 636


>gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           3_1_12]
 gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           638R]
 gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 75.6 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD +   HNIG++ R+A AF  + I      +      + K+A GA 
Sbjct: 16  EFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  + +  + S G+    +       +  E    ++ K A+++G E KG++
Sbjct: 76  FTVDWKYVNNAVETVDNLRSEGYVVYSVEQAEGSIMLDELTLDRSKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++       
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175


>gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 363

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 4/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V ++  +P+N+ A LR+  +F           S        K+   A+    ++ +   
Sbjct: 156 LVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGH 215

Query: 196 TDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                 +         +     S S  P+ +   +   A++LG E +G+    ++ A + 
Sbjct: 216 DRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGISDSMRDMADAT 275

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M G +++ N+S A ++ L   
Sbjct: 276 FVIPMRGFVRSFNMSVACSIILAHL 300


>gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS155]
          Length = 242

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            N  +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LNGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 151

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250
           ++L   L+       +    ++   +P       +  A + G E +GL  +  +      
Sbjct: 61  ADLASCLES--LGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AVA+Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148


>gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium]
          Length = 196

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            ++ + + + +++ D ++DP N+G I RSA A    G++ T     + ++ + +S++G++
Sbjct: 40  EVEELESCEWIVIADQISDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSM 99

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +IP      + +  Q   S    +        +P  +     KIA+++G E  G+    
Sbjct: 100 FYIPVFEDITIDEVKQAGFSIVGTSSHEQRG-SRPFTEASLTGKIAIVVGNEAHGMDDA- 157

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E       +   G  ++LNV+ AA V  +   +  
Sbjct: 158 -ELVDQWITIPHRGRSESLNVAMAATVVCFEVAHQR 192


>gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
 gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
          Length = 151

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+    R 
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250
           ++L   L+       +    ++   +P       +  A + G E +GL  +  +      
Sbjct: 61  ADLASCLES--LGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN  AVA+Y      
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEGWRQL 148


>gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 155

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   +   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 218

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++RS  +F    +   +  +           +        
Sbjct: 28  RTNHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNVKRIDREIAMGAQ-KWVDVQ 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S                          LE     +K A+  G E +GL     + A 
Sbjct: 87  RHSSAKHCIENLRKQGYKIVATSPHKDAHRLEDFDITEKAAIFFGRETEGLSDTVLDMAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ++ M G  ++LN+S +AA+ L        +
Sbjct: 147 DFIYIPMVGFTESLNISVSAAITLQHIMTKLKQ 179


>gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
 gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
          Length = 152

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L     P N G I R+  A +    +       ++  +L ++     E +  +   +L 
Sbjct: 1   MLFQPEIPANTGNIARTCAATNTTLHLVRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLE 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
           +  +K    GF  I                      + G E KGL     E        L
Sbjct: 61  EVFEKYPEAGFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHIIEENMERCLRL 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN AA+ +Y       
Sbjct: 121 PMTENVRSLNLSNTAAILIYEALRQQN 147


>gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
 gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
          Length = 175

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  +   G+    +       +  E    +  K A+++G E KG++
Sbjct: 76  FTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++       
Sbjct: 136 QEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKLK 175


>gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
          Length = 228

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 63  NPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+       
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 122 LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P L  +        L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +GL  +  E     A + M     +LNV+ A+ +AL
Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 221


>gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 156

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G+I R+         +       ++  +L ++     E +    
Sbjct: 1   MTNHIVLFQPQIPGNTGSIARTCAGTYTHLHLIKPLGFSTDDKMLKRAGLDYWESVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             N+    +      +        +    +          I G E  GL    ++  A +
Sbjct: 61  YENIESFFENTDGTYYLLTKFGKKTYSDFDFTDTEHDHFFIFGRETTGLPDWVKDAYAET 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN A++ +Y     
Sbjct: 121 ALRIPMNDNIRSLNLSNTASLLIYEALRQ 149


>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
 gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
          Length = 328

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 89/281 (31%), Gaps = 36/281 (12%)

Query: 35  SFNQK--SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
              ++  +R+  +   + + G++ +  A N   +      +  N       +        
Sbjct: 37  KLAKRVLNRNNKKSSIILIDGLNVIKEAFNAGLQLHTFFYSNDNIFDEHFSEYIFDISDE 96

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHN 146
                P+     +     ++G+A       + + D +  +       + ++ D+V DP N
Sbjct: 97  CLCKIPKWYLNSMTSVQTNRGVAALFFKPKTSSFDEISMASDKELLPVTLICDNVRDPGN 156

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+RSA A +C  +I T   +      + +SASG+   +P                  
Sbjct: 157 LGNIIRSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITWGQISCSKALKS 216

Query: 207 FQTIGLSSDSKKPLE---------------------QEIKNDKIALI-LGAEGKGL---- 240
                      +                         +  +   AL+ +G E  G     
Sbjct: 217 MNFYLAECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGALLAIGNEAHGFKLNT 276

Query: 241 RPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                E         + +   I++LNV+ AA++ L+     
Sbjct: 277 TASVTECCDITQRITIPLCHRIQSLNVATAASIILFEASRQ 317


>gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 155

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MISIALYEPEIPPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   Q   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           frigidimarina NCIMB 400]
          Length = 240

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            N  +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LNGPVAIVFGRENHGLSNEELQKCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
 gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
          Length = 157

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    +    +       ++  +L ++       +  + 
Sbjct: 1   MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249
             +L D ++   +     I   SD           D+    + G E  GL      E   
Sbjct: 61  HDSLEDFIEYSKNGDVYLIETYSDEPFTKNDFSDQDRDIYFMFGKETTGLPKDFAYERRD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     +++LN+SN AA+ +Y     
Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 186

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 227 DKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +A++ G+E  GL    +E   A +   L M    ++LN+SN+ A+ LY     
Sbjct: 110 NNVAMVFGSETAGLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164


>gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct]
          Length = 155

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MISIALYEPEIPPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   Q    ++ +K+   +   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 151

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G ++R      C   +        +   L ++     E+      
Sbjct: 1   MFHVILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++L   L+K+ +             +P          A + G E +GL     ++  +  
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKG--SRPFHDASFAPGDAFLFGPESRGLPADILDSLSSEH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 186

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 227 DKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +A++ G+E  GL    +E   A +   L M    ++LN+SN+ A+ LY     
Sbjct: 110 NNVAMVFGSETAGLADDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164


>gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 182

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +    D V   QL +VLD +   HN G I R A A     II            L K+A
Sbjct: 15  HIQNNEDFVDVKQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTA 74

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAEGK 238
            GA + +P   + +   A++ +   G++ I  +      +   +      +A++ G E  
Sbjct: 75  MGADKMVPCRVMPDSATAVRTLREEGYRMILAAECMPGSRFAWEMKYEFPLAIVFGNEAL 134

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+ P+T E    +  L M G   ++NV N+AA  LY  
Sbjct: 135 GVAPETLELVDGLVSLPMFGEKSSINVGNSAAAILYAV 172


>gi|301095550|ref|XP_002896875.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108625|gb|EEY66677.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 486

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 319 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPSLRMTQQDVTFVNVSATAHKWM 378

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 379 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 438

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +   G++++LNV  + A+ L+     
Sbjct: 439 EVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 475


>gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
 gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
          Length = 254

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +    L+ G E  G+       A     + M G +++LN+S AAA++LY  
Sbjct: 149 SKPTVLLFGNEHSGVSETALHKADGNFVIPMQGYVQSLNISVAAAISLYDV 199


>gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
 gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
          Length = 156

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R +                 +   + ++      H      
Sbjct: 1   MINIVLYRPQMPQNAGNIIRLSANCGAKLHFVGPLDFFMDDKKMLRAGLDY--HEIANLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + +      +    + I  +             D+  L+ G E  GL  +  +      
Sbjct: 59  VHTSFEKFMENMNPKRLIASTIHGTATPSDFSFEDEDFLLFGRETSGLPDEVMQIIPEKF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    + LN+SNA AV  Y      
Sbjct: 119 RLRIPMVEKSRCLNLSNAVAVMAYEAWRQL 148


>gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
 gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
          Length = 259

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            N  +A++ G E  GL  +  ++      +       +LN++ A  +  Y  +
Sbjct: 105 LNGPVAIVFGRENNGLSNEELQSCQFHVAIPANPEYSSLNLAQAVQIICYEAR 157


>gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis
           HAW-EB3]
          Length = 254

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LTGPVAIVFGRENNGLSNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 161

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAQIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+     +    T 
Sbjct: 59  KHKTFNEFLNTEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMSILDNLPTTQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA AV +Y       
Sbjct: 119 KIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149


>gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 286

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 90/249 (36%), Gaps = 8/249 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
               ++   +  +++ ++     +  +Q     + GV  +S A+    R    L      
Sbjct: 11  PSVQRVTSRNARFQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWRVRALLYDDSRK 70

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLL 135
           L+    +           + P+ + ++ G+++      +    + +  L+ +      L 
Sbjct: 71  LSGWAREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLG 129

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ + 
Sbjct: 130 VLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSP 189

Query: 196 TDALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +  +       +              +        + L++G E  GL    +E    
Sbjct: 190 AEVMAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDV 249

Query: 251 MAHLHMPGI 259
              + M G 
Sbjct: 250 TVSIPMAGA 258


>gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 166

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+  A      +            L ++       +    
Sbjct: 1   MALHIVLFEPEIPQNTGNIARTCAAVGATLHLVHPLGFSLSEKHLRRAGLDYWPLLTLCE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
            +N+ +  QK            +            ++  L+ G E  G+      E   +
Sbjct: 61  YANVDEFFQKKSGENLYFFTTKAKHSYTE--LTYPEETYLVFGKESAGIPESILVEHQKT 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+A Y     
Sbjct: 119 CVRIPMRSQARSLNLSNSVAIATYEYLRQ 147


>gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630]
 gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42]
 gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255]
 gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291]
 gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58]
 gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile]
 gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 156

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I+R+  A      +        +   L +      +      
Sbjct: 1   MSLNIVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250
             +  +  +K  +  +      +            +   ++ G E KGL     +    +
Sbjct: 61  YDSFEELQEKYPNSKYFFSTTKAKQSHSD--VKYEENCFIVFGKETKGLPEPLLKANMDT 118

Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNHF 280
              + M      ++LN+SN+ A+ +Y      
Sbjct: 119 CIRVPMLDVEKARSLNLSNSVAIVVYEALRQI 150


>gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 161

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + + L     P N G I+R          +        E   L ++      H     
Sbjct: 6   NMISIALYEPEIPPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDY--HEFADL 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                 A     +   Q    ++ +K+   Q   +    L+ G E +GL     E     
Sbjct: 64  KIYKNFAEFYQQNKDKQIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQT 123

Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN+ AV LY   N+ 
Sbjct: 124 QLKIPMHKNSRSLNLSNSVAVILYGALNNI 153


>gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
 gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
          Length = 171

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   + I+   D+              ++ +++   +    D   ++ G E  GL  +  
Sbjct: 53  YWHLLDITTYPDSASFFAQNRGPFYFFTTKARRTYTEPQYPDGAYIVFGREDAGLPEELL 112

Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +       L M    ++LN+SN  AVA+Y     
Sbjct: 113 FQNPDCCVRLPMIAGARSLNLSNTVAVAVYEVLRQ 147


>gi|309806115|ref|ZP_07700134.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
 gi|308167470|gb|EFO69630.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
          Length = 114

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           LI+G E  G+  + Q       ++ + G  ++LN + AA + +Y
Sbjct: 68  LIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNAAVAAGIMIY 111


>gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
 gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
          Length = 152

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++   + ++     + +      + 
Sbjct: 3   IVLYQPEIPPNTGNIARTCACTGASLHLIRPLGFSTDEKAVRRAGLDYWDKVDVNYYDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            +  +K     F      +   K   +        L+ G E  GL  +  E        +
Sbjct: 63  RELEEKYSDHNFYFATKFA--SKFYTEIEYKSDDFLVFGQETAGLPEEITERYKENCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   ++ALN++N+ ++ LY     
Sbjct: 121 PMLKEVRALNLANSVSIILYEALRQ 145


>gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074]
          Length = 277

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 90/249 (36%), Gaps = 8/249 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
               ++   +  +++ ++     +  +Q     + GV  +S A+    R    L      
Sbjct: 2   PSVQRVTSRNARFQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWRVRALLYDDSRK 61

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLL 135
           L+    +           + P+ + ++ G+++      +    + +  L+ +      L 
Sbjct: 62  LSGWAREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLG 120

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ + 
Sbjct: 121 VLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSP 180

Query: 196 TDALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +  +       +              +        + L++G E  GL    +E    
Sbjct: 181 AEVMAWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDV 240

Query: 251 MAHLHMPGI 259
              + M G 
Sbjct: 241 TVSIPMAGA 249


>gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
 gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
          Length = 158

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 3/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             S L + L     P N G I RS  AF     +        +   + ++      H+  
Sbjct: 4   PESPLRIALFEPRIPPNTGNIARSCAAFQLPLSLIEPLGFSIDDRAVKRAGLDYWPHVDL 63

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +    L ++               + L          L+ G E  GL    +E   
Sbjct: 64  ATHPDFEHFLAELPVPHRLIGCS-RHQGQSLSTFQFQPGDVLLFGREDTGLPNPVRERCD 122

Query: 250 SMAHLHMPG--IIKALNVSNAAAVALYITQNHF 280
           ++  + M G   +++LN+S + A+  +      
Sbjct: 123 AICTIPMRGHENVRSLNLSVSCALVSFQAGLQL 155


>gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
 gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
          Length = 167

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 1   MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKHLKRAGLDYWHDVHITYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
            +L   +  +       I   ++          ++    + G E  GL     +E A   
Sbjct: 61  KDLAAFMSFLGDRPLYLISKFANRVYSEVDYTTHEDQFFLFGKETTGLPETFMREHADKC 120

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDAHVRSLNLSNTAALIIYEALRQ 149


>gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396]
 gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC
           2396]
          Length = 154

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E+ P  R 
Sbjct: 1   MLNIVLFQPEIPPNTGNIIRLCANCGFTLHLIEPLGFTWDDKRLQRAGLDYHEYAPVKRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    L ++       +      K    +       AL+ G E +GL  +  +   + S
Sbjct: 61  GDFQQFLDEVRPNKVYALSTRG--KSYYHEVSFAAGDALVFGPETRGLPQQMLDELGSES 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN  A+  Y      
Sbjct: 119 CLRVPMRQDSRSLNLSNTVALVSYEAWRQL 148


>gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
 gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
          Length = 354

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 102/312 (32%), Gaps = 56/312 (17%)

Query: 7   KKSEKIFSLKDSHYAK------LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           K ++K  S   +HY +      +RRN+   K+  + +            ++YG+++V A 
Sbjct: 48  KNNDKRNSYLYTHYTRNNSSINIRRNNFLDKQNDNIS-----------DYIYGLNSVYAV 96

Query: 61  LNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPVKTVPPQTIDKIVG----- 106
           L    R I +++  KN               +D        ++ +    ++++VG     
Sbjct: 97  LKKNERTIEEVIVNKNIKLNRKIHKQNYEYIFDELKKRNVSIQYMEKYKMNELVGGFPHN 156

Query: 107 --KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                 H          +         + + + L  V D  NIG + RS   F    I  
Sbjct: 157 DIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMNIGNVCRSIFFFGGHTIFL 216

Query: 165 TKRYSPSESAVLAKSAS----------------GALEHIPYIRISNLTDALQKMHSWGFQ 208
            K+   +E     K  +                       ++    L        S    
Sbjct: 217 KKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFMNHMKLNGFTIYSTSCHKN 276

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-------HMPGIIK 261
                        +  +N+KI +ILG E KGL+    E +    ++       +    I 
Sbjct: 277 NTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSDYCVYINNLSYNENTQFHID 336

Query: 262 ALNVSNAAAVAL 273
           +LNV+N  ++ L
Sbjct: 337 SLNVNNVCSIML 348


>gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
 gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
          Length = 163

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +              ++ G E  G+  +   +       + M G I++LN+ N+
Sbjct: 76  YMATTKAPNVYTDVRYEPDCYIMFGKESAGIPEEILVKHKEDSIRIPMAGDIRSLNLGNS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIILYEALRQ 146


>gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 182

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L+++LD+V   HNIGA+LR+A AF  + ++     +   +  + KSA GA   + 
Sbjct: 21  MAKIPLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGAEFSVR 80

Query: 189 YIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +         ++ +   G++                      K AL+ G E  G+   T 
Sbjct: 81  WEYSPEAQIPVRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVFGNEVSGVEQATI 140

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVA---LYITQNH 279
           +       +   G   +LNVS A  +     +    +
Sbjct: 141 DLCDGSVEIPQYGTKHSLNVSVACGIVVWTFFEKLRN 177


>gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
 gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
          Length = 166

 Score = 75.6 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ + K   +        ++ G E  G+  +           + M G I++LN+ N+
Sbjct: 76  YMATTKAPKVYTEVQYEPDCYIMFGKESAGIPEEILVNHKEDCVRIPMVGDIRSLNLGNS 135

Query: 269 AAVALYITQNHFA 281
            A+ LY       
Sbjct: 136 VAIILYEALRQQN 148


>gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 160

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    +   +       G Q    S  + +  +     +   L+ G E  G+    
Sbjct: 50  YWHLVKVHYHENFSEVLRLFAGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGIPEAL 109

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E        + M    ++LN+S+AAA+  Y      
Sbjct: 110 LEEHWEDCIRIPMRLGARSLNLSSAAAIVAYEAMRQI 146


>gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
 gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
          Length = 174

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 228 KIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            IAL+ G+E  GL    +      +   L M    ++LN+SN+ A+ L+     
Sbjct: 99  NIALVFGSETAGLPEPIRAAIGQDNWLRLPMLPTSRSLNLSNSVAITLFEVWRQ 152


>gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 154

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ V       +        +   + ++    + H   I     
Sbjct: 3   IVLFEPEIPQNTGNIIRTCVCTGTTLHMIRPFGFSMDEKQIKRAGMDYISHADIIYYDCF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K            ++               LI G E +GL  K ++    +   +
Sbjct: 63  EEYFEKYDKDDMFFFTTKAEKSYSD--VKYTKNSHLIFGPESRGLPEKIRKINIQNDVRI 120

Query: 255 HMPGI--IKALNVSNAAAVALYITQNH 279
            M     +++LN+SN+ A+ L+     
Sbjct: 121 PMKANEYVRSLNLSNSVAIGLFEALRQ 147


>gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS185]
 gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS195]
 gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS223]
 gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS678]
          Length = 242

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LKGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 153

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V      P N GA +R +        +        + A L ++      +     +
Sbjct: 1   MLHIVFWEPEIPGNTGAAIRLSACTGSVLHLVRPLGFDMDDAKLRRAGLD---YHDLAHV 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                    +     +   L+  +++        D   L+LG E  GL  +         
Sbjct: 58  RVHDSLDGALAGIPGRVWALTGRAERAYTDVAYGDGDGLLLGRESVGLSEEAMSHPGVAG 117

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M   +++LN++N+AA+ LY      
Sbjct: 118 RVRITMVPGVRSLNLANSAAIVLYEAWRQL 147


>gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146]
 gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 157

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFIWDDKRLRRAGLDY--HEFASIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   +         +   L++            D   L+ G E +GL     ++     
Sbjct: 59  RHHDYSSFLSGEKPTRLFALTTKGTPAHSDVTYRDGDYLLFGPETRGLPSTILDSLPTAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQL 148


>gi|154250971|ref|YP_001411795.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
           DS-1]
 gi|154154921|gb|ABS62138.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
           DS-1]
          Length = 256

 Score = 75.3 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+  S  + +R   +     L G  TV  AL     +   +LA   A A      
Sbjct: 13  QNAQAKRWLSLTE-TRGIKKHGAFLLSGRKTVPEALKRHGVRFTAVLA---AKAEDAEAL 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            LP       V     + +         LA E         D  +  + L +L  + DP 
Sbjct: 69  PLPAGIARYAVGRALFEMLDTNGTGFPLLAGEV--PEMAAADFSKPPKGLELLCALGDPA 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LRSA AF    ++  +  +        +  + A   + ++R    +         
Sbjct: 127 NLGALLRSAAAFGVSRVVLMEGAAHPFHPKALRGGANAQFEMSFLRGGGWSALEGAKGPL 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +  +            + L+LG EG G+ P    T      +   G +++LN 
Sbjct: 187 VALDGAGADMTAYD-----WPRDLRLVLGEEGLGVPPALAAT---RLAIATTGRVESLNA 238

Query: 266 SNAAAVAL---YITQ 277
           + AA++AL   Y  +
Sbjct: 239 TVAASLALQAWYEAR 253


>gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp.
           Re1]
          Length = 167

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKALNVS 266
               L++ +K+            L+ G E  GL  P  +        + M    ++LN+S
Sbjct: 81  CKYFLTTKAKQCYADVSYEPDCYLVFGKETAGLPVPLLKANRERCIRIPMTDEARSLNLS 140

Query: 267 NAAAVALYITQNH 279
           N+ A+ +Y     
Sbjct: 141 NSVAIVVYEALRQ 153


>gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 218

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 9/164 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +   N  L +VL     P N G I R+  A +    +        + A L ++      +
Sbjct: 30  EISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPY 89

Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +      +  +  +       +      +                 LI G+E  GL P+ 
Sbjct: 90  VVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEA 149

Query: 245 QETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                S         + M    ++ LN+S +  +ALY       
Sbjct: 150 LLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 193


>gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera]
          Length = 250

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 9/164 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +   N  L +VL     P N G I R+  A +    +        + A L ++      +
Sbjct: 62  EISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPY 121

Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +      +  +  +       +      +                 LI G+E  GL P+ 
Sbjct: 122 VVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEA 181

Query: 245 QETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                S         + M    ++ LN+S +  +ALY       
Sbjct: 182 LLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 225


>gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
 gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
          Length = 158

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      C   +        E   L ++      H      
Sbjct: 1   MFHVILYQPEIPPNTGNIIRLCANTGCQLHLIKPLGFTLEDKQLIRAGLDY--HEFANLR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
                          +   L++   +P  +       A + G E +GL  +     T   
Sbjct: 59  VYDHLEACLSAFDAGRIFALTTKGSQPFHEIRYQPGDAFLFGPESRGLPAEVLNQLTTTQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA++     
Sbjct: 119 RVRLPMLPDNRSLNLSNTVAVAVFEAWRQ 147


>gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
 gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 153

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L + L   + P N G ILR A        I            L ++    +  +   
Sbjct: 1   MNELRIALYQPDIPGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTLT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  N           G + +  S+ + +P  +        L+ G E  G+     + A +
Sbjct: 61  RHVNWERFETWRAESGRRLVLASTKAAEPYTRFEFRADDILLFGRESAGVPDHVHDRADA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++ A+A+ +      
Sbjct: 121 RILIPMAPGQRSLNIAMASAMIVGEAIRQ 149


>gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228]
 gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
 gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228]
 gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
          Length = 155

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     E +  +  
Sbjct: 1   MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWEKLEPVIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            +L   L+    +  +    ++ S K   Q    +   L  G+E  GL  +  +    + 
Sbjct: 61  ESLDIFLEHNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFGSESYGLPMELMQLNWDNA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKACGRSLNLATSVGIVSYEALRQ 148


>gi|301095558|ref|XP_002896879.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108629|gb|EEY66681.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 199

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 5/151 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+M    V+   N+  + R+   F+   ++        +       ++ A + +P   + 
Sbjct: 38  LIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPLEEVR 97

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETA 248
              D L++      +        ++              K+ L+LG E +G+  +  +  
Sbjct: 98  PQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLV 157

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   G++++LNV  + A+ L+     
Sbjct: 158 DVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 188


>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
 gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A      +        +   L ++      ++      
Sbjct: 4   LNIVLVEPQIPQNTGNIARTCAATGARLHLVKPLGFAIDDKKLKRAGLDYWHYLDITYYD 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
            L D   +     F        +          D   ++ G E  GL          +  
Sbjct: 64  GLKDFFAQNSGGNFYYFTTKGQANYSE--VAYPDNAYIVFGREDAGLPEDLLFHNPETCV 121

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M G I++LN+SN  AVA Y     
Sbjct: 122 RLPMRGGIRSLNLSNTVAVATYEVLRQ 148


>gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 151

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  V    D  +        +   + K+      H+      + 
Sbjct: 3   IVLFQPLIPQNTGTIGRLTVCTDNDLHLIKPLGFELDEKKIKKAGMDYWPHVKLHIHESW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            D L             +   K   E     +   LI G E  GL P+  E    S+  +
Sbjct: 63  EDFLNNTPEDKTMVFCTTKCKKTIYEHT-FTEDDYLIFGNESHGLPPEFYENFQDSLCTI 121

Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281
            M G  +++ N++N+ ++  Y      +
Sbjct: 122 PMRGDHLRSHNLANSVSIVTYEAIRQIS 149


>gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R          +      P + A + ++     ++      +
Sbjct: 7   FHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHA 66

Query: 194 NLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
           +          +      +   L++    P            + G+E KGL    +E+  
Sbjct: 67  DWQAFLNSFPAEQPLNHERMFALTTHGSTPFASMAFQPGDVFVFGSETKGLETSLRESFP 126

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    L M    ++LN+SN  AV +Y     
Sbjct: 127 PSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 158


>gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta]
          Length = 1623

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 9/220 (4%)

Query: 69   FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            FQ   ++  L++L              V      +    +            L    L  
Sbjct: 1394 FQWYLSQTQLSKLKPGDWSQQDIGTNLVEADNQAEWTDVQKKIIPWNNRVPDLDLELLFQ 1453

Query: 129  VR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             R        S+L++V   ++ P N+G + R+   F    ++       S+      S S
Sbjct: 1454 DRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGSLQCISDKQFQHLSVS 1513

Query: 182  GALEH--IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                   +       +    QK            +     L Q    +K  L+LG E +G
Sbjct: 1514 AEQWLPLVQVKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREG 1573

Query: 240  LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +     +       +   GII++LNV  + A+ ++     
Sbjct: 1574 IPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1613


>gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 175

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  LL+         N+G +LR+  A      +    + P   A        A  H
Sbjct: 22  SHTCWDHLLVAPLWPMHDVNLGTLLRTCDATGACLAVPKLPWVPEALARGNTLRRRACVH 81

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                        +K        I L+ ++ +  +      +   +LG E  G+ P+  +
Sbjct: 82  WTGHNPVQWLADQRKRDDTTVLGIELAEEAVRLADLPPARHRTVAVLGHERTGIPPEALD 141

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  + M G   +LNV+ A ++ LY
Sbjct: 142 ELDLVVEIPMIGTGASLNVAVAGSLVLY 169


>gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
 gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
          Length = 254

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LEGPVAIVFGRENNGLTNEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16]
          Length = 645

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 25/269 (9%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------- 75
            R+     K ++ +  K     + +   L+G+H+V  A+ +  R+   +   K       
Sbjct: 17  FRKAKLAKKSVEKYKAKKIEIPELKGEALFGLHSVLEAMRSGKREFHSVYLKKTLEKRAE 76

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            +   +   +         + +    +D++   + +H G+ ++ + L   +      S  
Sbjct: 77  SDDRIKEVLEKIKNMGIRKELLTDDQLDRLTEYQ-LHNGICMDASALKFSSFQPKNVSIF 135

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +   D V DP N+GAI RSA  F  DG+   K   P         +S        ++   
Sbjct: 136 V---DKVLDPGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPSMIKSSCGALEHLPVQQFE 192

Query: 195 LTDALQKMHS--------WGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ 245
                +                     +        + K  K   ++LG EG G+     
Sbjct: 193 GFHEFRDQIKSNGGEIVATCDPLAAKKAGITAKSLDQWKPHKTVGIVLGDEGVGISRGIL 252

Query: 246 ETATSMAHL----HMPGIIKALNVSNAAA 270
               ++  +         + +LNVS  A 
Sbjct: 253 NLCDTVISIAPVGEHQSNVTSLNVSVVAG 281


>gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
 gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
          Length = 164

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++ +              ++ G E  G+ 
Sbjct: 48  GMDYWDDLDVTTYIDFQDFMEKNPGAKIYMATTKAPNVYTDVNYEPDCYIMFGKESAGIP 107

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +           + M G I++LN+ N+ A+ LY     
Sbjct: 108 EEILIHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 157

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  I   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIVWDSF 63

Query: 196 TDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
            + L+      +   T                +++I  I G E KGL  + +E  +    
Sbjct: 64  DEFLEATSDKNYYLITKFGQKIYSDFDFSNKNDEEIYFIFGRETKGLPKEFREKYSEQAL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M   +++LN+SN AA+ +Y       
Sbjct: 124 RIPMSENVRSLNLSNTAALIIYEALRQQN 152


>gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 150

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL +   P+N G I R A+   C   +        +   L ++     +H+     
Sbjct: 1   MLNIVLINPEIPNNTGNIGRLALGSGCKLHLVKPFGFEIDDTRLKRAGLDYWQHLDVQYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            N  D   K  +   +   LSS   K        + + L+ G E KGL  +  E     +
Sbjct: 61  DNTEDFFNK--NAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQL 118

Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
             + +    I++LN++NA  +  Y       
Sbjct: 119 YKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149


>gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 153

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++        N GA +R +        +        E + L ++      +     +
Sbjct: 1   MLHIIYFEPEIAGNSGAAIRLSACTGSMLHLVEPFGFDMEDSKLRRAGLD---YHDLAHV 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
               D               +  +          D  AL+ G E  GL     +      
Sbjct: 58  QTHPDLEDAFAGIEGNIYAFTGHATTFYGDISYQDGDALLFGKESTGLPQWVLDHPQVKL 117

Query: 253 --HLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+A++ LY      
Sbjct: 118 AARIPMLPERRSLNLTNSASIVLYEAWRQL 147


>gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp.
           W3-18-1]
 gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens CN-32]
 gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens 200]
          Length = 241

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 106 TGPVAIVFGRENHGLSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 256

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 10/233 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
               +  +  +  AL    +K+ ++  T       +          +  +    + KI  
Sbjct: 28  NAFLVENIKDLELALE--YKKVIKIYTTN-----ANLQIKSFKNEQIILISHSIMKKITS 80

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E+  + +AL    L    L+     + +++L+++ DP N+G I+R+  AF    I +  
Sbjct: 81  YESASEVVAL-CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGV 139

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            +  S+    +K A      +    +S + D L + +     T      +K         
Sbjct: 140 DFYNSKVISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENE 199

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K A+I G E  G+    ++      ++ +    ++LN++NA A+ LY     
Sbjct: 200 QKYAIIFGNESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQ 250


>gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
 gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
          Length = 1767

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  D+  L+LG E +G+         +   +   G++++LNV  + A+A++      
Sbjct: 1704 FVFPDRTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQL 1761


>gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 159

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL---EHIPY 189
              + L       N G I+R +     +  +        E   L ++            +
Sbjct: 1   MFEIALYEPEIAPNTGNIIRLSANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRH 60

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--T 247
              +   D L+       +    ++ +              L+ G E +GL  +  E   
Sbjct: 61  KDYAAFLDYLENESEGEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPAELIEGLP 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M    ++LN+SN+ A+ ++     
Sbjct: 121 MEQRVRIPMMADSRSLNLSNSVAIIVFEAWRQ 152


>gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666]
          Length = 183

 Score = 75.3 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 2/162 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             +S       ++   +VL     P N G ++R A    C   +        +   + ++
Sbjct: 7   HCVSYPASNDNSAMFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRA 66

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                E+   +R ++    L        +   +++     +          L+ GAE +G
Sbjct: 67  GLDYHEYAQVLRHASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRG 126

Query: 240 LRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L P  +E+        + M    ++LN+SN  AV ++     
Sbjct: 127 LAPDVRESFPMAQRLRVPMQPGQRSLNLSNTVAVTVFEAWRQ 168


>gi|229015864|ref|ZP_04172832.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
 gi|228745426|gb|EEL95460.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
          Length = 61

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 232 ILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + G E  GL     E        + M   +++LN+SN AA+ +Y       
Sbjct: 1   MFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQN 51


>gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 154

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 37/111 (33%)

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                      A  A+++     +           +   + +  ++ + +P +       
Sbjct: 33  PCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQGRLVLFTTRAAQPFQDFDFRPG 92

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             L+ G E  G+  +    A +   + +    ++LNV  AAA+AL      
Sbjct: 93  DVLLFGRESAGVPDEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQ 143


>gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 154

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +             +    ++ +++   +   +    L+ G E  GL P+ 
Sbjct: 51  YHDLAHVRVHADLEAAWSALRPERVFAFTAHARRYHHEIAYSAGDVLMFGPEPTGLPPEA 110

Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 T    + M    ++LN+SNAAAV  Y     
Sbjct: 111 LGDPHVTESVRIPMLASRRSLNLSNAAAVVAYEAWRQ 147


>gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 330

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++ G E +GL             + + G  ++LNV+ +AAV LY
Sbjct: 278 PTIVLFGNEARGLDDPLINRCQEAVRIPLYGKAESLNVAMSAAVILY 324



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 27  HRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +   ++++      ++++  +     + G   V  A+     ++  L   ++ L   +  
Sbjct: 10  NPRSQRIRHIADLARAKNRKKYGRFLVEGPQGVREAIGCKPGQVLDLYCDQDFLQFQESQ 69

Query: 85  A----------NLPHPFPVKTVPPQTIDKIVGKE 108
           A                 V     + +D I    
Sbjct: 70  ADSVVGDLAYKADDRGIHVHVCSAEVMDAISKDC 103


>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 256

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 10/233 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
               +  +  +  AL    +K+ ++  T       +          +  +    + KI  
Sbjct: 28  NAFLVENIKDLELALE--YKKVIKIYTTN-----ANLQIKSFKNEQIILISHSIMKKITS 80

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E+  + +AL    L    L+     + +++L+++ DP N+G I+R+  AF    I +  
Sbjct: 81  YESASEVVAL-CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGV 139

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            +  S+    +K A      +    +S + D L + +     T      +K         
Sbjct: 140 DFYNSKVISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENE 199

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K A+I G E  G+    ++      ++ +    ++LN++NA A+ LY     
Sbjct: 200 QKYAIIFGNESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQ 250


>gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1]
          Length = 228

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 L+ GAEG GL P+ +E A     +   G  +++N   AA + ++    
Sbjct: 166 LPRDCVLVFGAEGPGLSPELREAADLAVSIAQFGSTRSINAGVAAGIVMHAWVR 219


>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 246

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 16/236 (6%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           +   L + +    ++L T+  L + +          +  V  + +   V  +      AL
Sbjct: 2   IEEMLKSGNHP-SKILTTEKWLDKNEDLYQKIDQSLINVVSEEVLASAVSTKNPDGVAAL 60

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP------ 170
                +            ++VLD + DP N+G + R+A+A     I+      P      
Sbjct: 61  VEISSIPNFDFNNIEDDFILVLDRIQDPGNMGNLFRTALAAGVSKILLAGGAHPLGQKVL 120

Query: 171 -------SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                                     +   +                     S+KP  + 
Sbjct: 121 RASSGSVFHLPFKRFDGGEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWEI 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
             +   ALILG EG G+  + QE       +    ++++LNV+  A  + L   + 
Sbjct: 181 DWSKPTALILGNEGNGIHKRIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 235


>gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 231

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  IA+++G E  G+  + +  A     L M G  ++ NVS A+ +  Y
Sbjct: 130 LDQPIAIVMGNERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFY 179


>gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 155

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++      P N G  +R A     +  +        E A L ++      H   +  
Sbjct: 1   MFKILFYTPEIPGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDY--HDLAVVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250
            + T           +    ++ +          D   L+ G E  GL    Q  E  T 
Sbjct: 59  VHKTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITE 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++N+A++A++     
Sbjct: 119 RVKIPMIPGRRSLNLANSASIAIFEAWRQ 147


>gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
 gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
          Length = 245

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P   E  ++  ALI G E +GL  +    A     +       +LN+++A  +  Y    
Sbjct: 100 PWLLESPSEPAALIFGREDRGLSNEELNYAQRFVRIPSSENYSSLNLASAVGICCYELAQ 159

Query: 279 H 279
           +
Sbjct: 160 Y 160


>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 164

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM-PGIIKALNVSNAAAVALYITQ 277
             +        L+ G E KGL  +T    A     + M    I+++N++ AAAV LY   
Sbjct: 101 YTEVRFQPGDFLVFGKETKGLPEETLALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAI 160

Query: 278 NH 279
             
Sbjct: 161 RQ 162


>gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 252

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 17/240 (7%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V A     +    +L        +L        L      + V P  + KI G   
Sbjct: 10  GLPAVKARFQRDAASFRRLYFDYETARKLGIICKTLALAKKV-YRCVEPAELAKIAG--T 66

Query: 110 VHQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +H G  +                    +    L++LD + + HN+GAI R+A  F    I
Sbjct: 67  LHHGGVVAVVDEPALRAPLPREVRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHI 126

Query: 163 ITTKRYSPSESAVLAKSASG----ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
           I       +     A   +      L       ++     L +                 
Sbjct: 127 IIPAHAFAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELHEAGYEVVGAATRGGALTL 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P          AL+LG E  GL  +  +  T +  +   G I++LNVS AAA+ ++    
Sbjct: 187 PALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 246


>gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114]
 gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114]
          Length = 159

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264
            +    ++ +              L+ G E +GL     +         + M    ++LN
Sbjct: 78  HRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDSRSLN 137

Query: 265 VSNAAAVALYITQNH 279
           +SN+ A+ ++     
Sbjct: 138 LSNSVAIIVFEAWRQ 152


>gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
 gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
          Length = 161

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQNH 279
           Q        L+ G E  GL    +     +  + MPG   +++LN+S AAA+  +     
Sbjct: 98  QMRFEPGDVLLFGREDLGLPESVRRRCDQLCTIPMPGGAAVRSLNLSVAAALVSFQAGLQ 157

Query: 280 F 280
            
Sbjct: 158 L 158


>gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 165

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS VA +    +            + ++     E +     S+L
Sbjct: 3   IVLLEPEIPDNTGNIGRSCVATNTRLHLIEPLGFKLSEKRIKRAGMDYWEKLDLTVYSDL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D  +K           ++ +    +  + +    ++ G E  G+  +   E   +   +
Sbjct: 63  KDFYEKNPKAKEHMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPEEILAENEENCIRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ AV LY   + 
Sbjct: 123 PMWGDIRSLNLSNSVAVILYEALSQ 147


>gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis I19]
          Length = 176

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        E   L ++      H       + 
Sbjct: 26  IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDY--HDLAEVSIHE 83

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAH 253
                       +    ++  K            AL+ G E  GL  +T      T +  
Sbjct: 84  NLERCFDSLPHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 143

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNAAAVA Y      
Sbjct: 144 IPMLPGRRSMNLSNAAAVAAYEVWRQL 170


>gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 178

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE---H 186
               L++VLD++   +NIG+  R+A AF  + I+            + +SA GA      
Sbjct: 21  EKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSALGAEMAVAW 80

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  +  +AL+      +              +    D  A + G E +G+  +   
Sbjct: 81  EKNPSAVDAVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAFVFGNEVEGVADEVIA 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +     +   G   + NVS +A + L+    
Sbjct: 141 ASDGCLEIPQFGTKHSFNVSVSAGIVLWDYIR 172


>gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 152

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++      P N GA +R +        +    +   ++ +          +      
Sbjct: 1   MLHVIFFSPRIPGNTGAAIRLSANTGSMLHLVDPLFDMDDAKLRRAGLD----YHDLANT 56

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  + +     +    +S +++   Q    D   L+ G E  GL  +  +    ++
Sbjct: 57  LVHATWQECLEHVPGRIFAFTSHTERLYTQVDWRDDDTLLFGPEPTGLPQEILDHPRVSA 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++N+AA+ LY      
Sbjct: 117 HLRIPMVEGNRSLNLANSAAIGLYEAWRSL 146


>gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
 gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
          Length = 167

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +        +   L ++     E       
Sbjct: 1   MPHIVLFEPEIPPNTGNIIRLCANTGFDLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60

Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +          +        G +   L++  K         +   L+ G E +GL P  
Sbjct: 61  HDYFAFLKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQENDYLMFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN+ AV ++      
Sbjct: 121 LDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158


>gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum
           DSM 180]
          Length = 260

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL+LG E  GL          + H+       +LNV+ AA V  Y  + 
Sbjct: 116 VALMLGRESSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRR 165


>gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii
           B565]
          Length = 154

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDY--HEFAEVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +           +    ++  +            AL+ G E +GL  +  E+     
Sbjct: 59  RWPSYEAFLAAVAPKRVFACTTKGRTAHSAAQYALGDALLFGPESRGLPIEIIESLPFEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +    
Sbjct: 119 RLRIPMVPQSRSMNLSNAVSVFVYESWRQL 148


>gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 152

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I R+ V       +            L ++     EH+  +  
Sbjct: 1   MFNIVLIAPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            ++ + ++ +    F  +   SD +         D   LI G E +G+  K   E +  +
Sbjct: 61  DSIEEFMEYIKDKRFFFVETGSDKRYTD--VSFKDGDYLIFGREKEGIDQKLLDEYSKQV 118

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNH 279
             + M   I  +LN++N+ ++ LY     
Sbjct: 119 ITIPMTKKIDRSLNLANSVSIILYEALRQ 147


>gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
 gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
          Length = 166

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 9/154 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + L + L     P N G I R+  AF     +        +   L ++      H+ 
Sbjct: 5   NPEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSLRRAGLDYWPHVQ 64

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +       +                   +        L+ G E  GL    ++  
Sbjct: 65  VSTHGSFDALKDGLLPHNRIIGCSRRGGSCLS-EFEFQHGDVLLFGREDTGLPEDIRDQC 123

Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALY 274
            S+  + MP        G +++LN+S A A+  Y
Sbjct: 124 HSIVTIPMPGAAAPSGQGGVRSLNLSVACALVTY 157


>gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 161

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V +H   P N G  +R          +        E   L ++      H       + 
Sbjct: 11  VVFEHPVIPPNTGNAIRMCAGTGAHLHLIRPLGFDLEDRHLRRAGLDY--HDLARVTVHD 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETATSMAH 253
           +         G +    +      L          L+ G E  GL  +    +  T    
Sbjct: 69  SLDACLATLPGARVFAFTGHCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVR 128

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNAAAVA Y      
Sbjct: 129 IPMLEGRRSMNLSNAAAVATYEAWRQL 155


>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 178

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 19  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAE 78

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  + + G+    +       +  E    +  K A+++G E KG++
Sbjct: 79  FTVDWKYVDNAVEAVDNLRNGGYTVYSVEQAEGSIMLNELTLDRTGKYAIVMGNEVKGVQ 138

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++   N   
Sbjct: 139 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 178


>gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
 gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
          Length = 159

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264
            +    ++ +              L+ G E +GL     +         + M    ++LN
Sbjct: 78  HRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDSRSLN 137

Query: 265 VSNAAAVALYITQNH 279
           +SN+ A+ ++     
Sbjct: 138 LSNSVAIIVFEAWRQ 152


>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 176

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD++   +NIG++ R+A AF  + I      +      + K+A GA + + +  +
Sbjct: 24  PLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSVVWEYV 83

Query: 193 SNLTDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            N  D +Q   +            +       +  K++K ALI G E KG+  +   +  
Sbjct: 84  ENTMDVIQSLKENKVTTIAIEQAENAVFLNDFKVSKDEKYALIFGNEVKGVAQEVVSSCD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++  +   G   +LN+S +A V ++       
Sbjct: 144 TVVEIPQYGTKHSLNISVSAGVVVWDLWAKLN 175


>gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 160

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A   +  +         SA L ++            +
Sbjct: 1   MFKVVLYQPEIPQNAGNIARTCAATGAELHLIRPLGFQWNSAKLRRAGLDYWP-EVDYVL 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +   A  +      +    SS   +   +        L+ G E +GL  +  E      
Sbjct: 60  HDSWRAFLETLPPDGRIWAFSSKVSRLYTEVRYQPGDYLLFGPESRGLPSEVLERFPG-V 118

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNH 279
            + MPG   ++LN++ A  V LY     
Sbjct: 119 TIPMPGRGGRSLNLAVAVGVGLYEALRQ 146


>gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
 gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
          Length = 232

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 5/192 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V  + + +I     +      +        + + R + L +VL+ +  P N  A 
Sbjct: 10  IKLYFVSNEILKRI----EILSEFITQRRRERIDEVLSNRTNYLTLVLEDIFQPQNASAT 65

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+        I   +  + + +         +            +       +      
Sbjct: 66  MRTIEILGLSNIHIIE-TNNTYTLNPGVVLGASKWIDIIKYQCVESAFDNLKGNGYKIVA 124

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +    L+    +DK+A+  G E  GL     E A     + M G  ++ N+S A +
Sbjct: 125 TSLDNEAIFLDDFPIDDKMAIFFGTELTGLSNTVLENADLHLKIPMYGFTQSYNLSVAVS 184

Query: 271 VALYITQNHFAK 282
           +  Y   +   K
Sbjct: 185 IVFYSLISRLRK 196


>gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 240

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFA 281
           +  + L+ G E  GL P+ + +      + + G  ++ N+S +AA+ LY       A
Sbjct: 146 DRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYSVTTRRRA 202


>gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 162

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N G+I R  V   C   +        +   L ++     + +  +   +L
Sbjct: 4   IVLVRPEIHTNTGSIGRMCVNSGCRLHLIKPLGFMLDDKHLKRAGLDYWDKLDLVIWESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            D L +   +  +    ++ + +            L  GAEG GL     +        +
Sbjct: 64  DDFLTQNIKFKDRFFFATTKTNRLYFNTKFQKGDFLFFGAEGSGLPLDLMKIKKENCITI 123

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G  ++LN++ +  +  Y     
Sbjct: 124 PMSGDGRSLNLATSVGIITYEAIRQ 148


>gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 156

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNA 268
             LS+   +             + G+E KGL  +  +       +L M   +++LN++  
Sbjct: 75  FCLSTKGSQCYGDVSLPMDGVYVFGSESKGLPEEVLKKYYNHCYYLPMKPGVRSLNLATT 134

Query: 269 AAVALYITQNH 279
             V L+     
Sbjct: 135 VGVVLFEAVRQ 145


>gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
 gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
          Length = 263

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              NDKIA++ G EG GL     +    +  +        +N+S+AAA+ LY    +  +
Sbjct: 128 MNYNDKIAILFGREGNGLTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKNRNE 187


>gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
 gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
          Length = 251

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 13/233 (5%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTV--PPQTIDKIV--G 106
            H+V AAL      + ++  T  +         D       PV      PQ + +     
Sbjct: 8   PHSVMAALQTRPIDVTEIRLTAGSAQGSWGDVADEARSQRIPVVIKKSAPQKMKRRQAED 67

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +     G      P     L+            L + LD + DPHNIGAI R+A  F   
Sbjct: 68  QGRRTAGSVALVKPRTPFVLNELFPDSGQETGGLWLALDCIQDPHNIGAIFRTAAFFGVR 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK  S   +A +   ASG +E +P+   +NL+ ++ +    G   +G S  +++ +
Sbjct: 128 GIVLTKDRSAPINATVYDVASGGMEAVPFAVETNLSRSMTQAKETGVWIMGTSEHAEEDV 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               ++    +++G E KGLR  T E    +  L   GI+ +LN S AA + +
Sbjct: 188 SVYSQDRPWMVVIGNEEKGLRRLTLEQCDVVTRLTPTGIVDSLNASVAAGIMI 240


>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
           kowalevskii]
          Length = 445

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPG 258
            +       L+    K         K A+++G E  GL  +  + A        H+ M  
Sbjct: 354 MNDMDVDKKLNCVPTKDFYNIDWTVKSAIVIGGETHGLSKQAVDLADETYGYKVHIPMAF 413

Query: 259 IIKALNVSNAAAVALYITQNH 279
            + +LN + A +V  +  +  
Sbjct: 414 GMDSLNAAMATSVVTFEAKRQ 434



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 1/179 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
              + K+    +  +++ +  +  ++  Q + + L G   +  A+   +       +   
Sbjct: 114 RLRFEKVNAADKRVRRILTLMRSRKYREQTKKVLLEGRRLIIDAILAGAECHTIYFSRVE 173

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           +L  + W         +     +    +V  + +    +      L   +   ++  L +
Sbjct: 174 SLEGIPWYETDAELLRIPYKEVKLWSDVVTPQGIMAVFSQPRFEDLPM-MSEEQSIPLTV 232

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + D++ +P N+GA+LRSAVA     I+ TK         + ++ +GA            
Sbjct: 233 ICDNIREPGNLGALLRSAVAAGSQQILVTKGCVDIWDLKVLRAGAGAHFRTQIHNNLPW 291


>gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             I   KI L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1143 YIFPKKIVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1199


>gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 159

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +             L+ G E +G+     +T   + 
Sbjct: 59  KYKNFDDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAILDTLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y     F
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148


>gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 159

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +             L+ G E +G+     +T   + 
Sbjct: 59  KYKNFDDFLARAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRGIPKAILDTLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y     F
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148


>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
 gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
          Length = 170

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R   A      +        +   L ++     + +      
Sbjct: 1   MHIVLVEPEIPGNTGNIARLCAAEHLTLHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           N    ++ +    F      +           +    L+ G E KGL  +          
Sbjct: 61  NYDSVVRMLAGHHFYLNTTKAIRSYTD--ISYDGDDVLVFGKETKGLPEELLRSHKEDCI 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    ++LN+SNA A+        
Sbjct: 119 RIPMIEEARSLNLSNAVAIVAMEAMRQ 145


>gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 160

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I R+ V  +C+  I  K         L ++      H+ + R  
Sbjct: 8   FRIVLIEPEIPQNTGNIGRTCVGTNCELHIVGKMGFEINDTNLKRAGLDYWPHLTWYRHE 67

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
              D  + +       +  +   +   E          + G E KGL P+   +      
Sbjct: 68  TFEDWWKHVEDPSRIWLFTTKTQRTYFEP-QYQSGDWFVFGKETKGLDPEFLQKHPQQTV 126

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNH 279
            + M G   ++LN++ + A+A Y     
Sbjct: 127 TIPMIGEGARSLNLATSVAIAAYEGLRQ 154


>gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 157

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  +VL     P N G I R   A      +            L ++      H+    
Sbjct: 1   MQFHIVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWNHLEVYE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATS 250
             NL+  ++           L++ S+ P           L  G E  GL           
Sbjct: 61  WENLSSFMESSLLEIPHC-YLTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTLLSHYKDY 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++ +  + LY      
Sbjct: 120 CYTIPMQNNARSLNLATSVGIVLYEGIRQR 149


>gi|301095552|ref|XP_002896876.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108626|gb|EEY66678.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 664

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K+ L+LG E +G+  +  +       +   G++++LNV  + A+ L+     
Sbjct: 597 YTLPRKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQ 653


>gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 161

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R          +            L ++       +     
Sbjct: 1   MIHIVLFQPEIPQNTGNIGRMCALTQSRLHLIHPLGFTITDRHLRRAGMDYWFSLDVHHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
           ++    L   H+   + + L +    +        D   L+ G EG G      +   A 
Sbjct: 61  ADWAAFLTSPHAPPRERLWLFTTHATRRHWDAAFADGDGLVFGNEGHGAPAWLHDEIGAA 120

Query: 250 SMAHLHM-PGIIKALNVSNAAAVALYITQNH 279
               +      +++LN+S AA +A Y     
Sbjct: 121 RRVTIPHANPDLRSLNLSTAAGIACYEALRQ 151


>gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
 gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
          Length = 172

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R+  AF     +        +   L ++     E++ Y++ 
Sbjct: 1   MIHIVLFEPEIPGNTGNIMRTCAAFHMKLHLIEPLGFHLDEKHLKRAGMDYRENVDYVKH 60

Query: 193 SNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
            N     Q+  + G F  +              K+ +I L+ G E  G+           
Sbjct: 61  INWDSFFQEHGNQGLFYYVTRYGKHTPDSFMYPKDQEIYLVFGKESTGIPKPILANHEDF 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN  A+  Y     
Sbjct: 121 CMRIPMVEKARSLNLSNCVALCAYEVNRQ 149


>gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
 gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
          Length = 166

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            L +VL     P N G I R+     +   +I    +  +E  +                
Sbjct: 1   MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
           ++      +  H   +     S  +   +     ++ + L+ G E  G+  +   +   +
Sbjct: 61  VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKET 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN+ A+  Y     
Sbjct: 121 AVRIPMLPEIRSLNLSNSVAIVAYEVLRQ 149


>gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu]
 gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1]
 gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu]
 gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 151

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE KGL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 96  YIFGAESKGLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
 gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
          Length = 148

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSN 267
               S+  KK            LI G+E  G   +  ET       + M G +++LN+S 
Sbjct: 75  MFFFSTKGKKSFWDIKYPPDSYLIFGSESCGFPKEIYETYKEKLFTIPMTGPVRSLNLST 134

Query: 268 AAAVALYITQNH 279
           +A V L+     
Sbjct: 135 SAGVVLFEALRQ 146


>gi|695296|gb|AAB41449.1| spoU [Chlamydia trachomatis]
          Length = 119

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE KGL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 64  YIFGAESKGLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 113


>gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
 gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
          Length = 218

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               N+K+A+  G E  GL  +  E A     + M G  ++ N+S A A+ +Y
Sbjct: 122 NFPINNKMAVFFGTELTGLSSEVLEAADLCVKIPMYGFTQSYNISVAVAIVMY 174


>gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes
           Clip81459]
 gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL
           J1-175]
 gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956
 gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816]
 gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220]
 gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott
           A]
          Length = 169

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATS 250
             +L +  +K     F  I                +K    + G E  GL     +    
Sbjct: 61  YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQKNEE 120

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M   I++LN+SN AA+  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152


>gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 229

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 5/162 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV---- 175
                ++   R   + +VL+ +  PHN  A+LRS   F    +   +  +    +     
Sbjct: 23  WERIISILEERTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFTISSGVAL 82

Query: 176 -LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
             +               +       K   +        +      + +I   K A + G
Sbjct: 83  GTSGWLDIHRYREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLFG 142

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E +G+  +    A     + M G +++ N+S + A+ L+  
Sbjct: 143 NELEGVSQEAMALADEFMKIPMRGFVESFNISVSCAIVLHHL 184


>gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804]
 gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii]
          Length = 156

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G  +R          +        + A L ++     E  P    
Sbjct: 1   MFHVVLVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L  AL    +       L++ +++ + +         + G E  GL  +         
Sbjct: 61  DTLEQALAATGAPPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEHMALFAPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 CLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa]
 gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa]
 gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa]
          Length = 216

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALN 264
                   +DS  P+ +       A +LG EG GL  K  E      ++   G    +LN
Sbjct: 73  CDICGVEITDSAFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYIPQYGCGTASLN 132

Query: 265 VSNAAAVALYIT 276
           V+ AA++ L+  
Sbjct: 133 VTVAASIVLHHF 144


>gi|229820816|ref|YP_002882342.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566729|gb|ACQ80580.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 281

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 93/280 (33%), Gaps = 24/280 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +   ++   +  +++ Q+         +   L + GV  ++ A+ +       L     +
Sbjct: 8   TTTQRVSSRNATFQQWQALLTNRTKRHRAGALLVSGVRPLTVAVESGHVVREWLHGETGS 67

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           L+    D     P     V  +   ++ GK +   + LA+                 L +
Sbjct: 68  LSAWARDLVAHAPAQRFVVADELRHELGGKEQGTPELLAVVEMADGDIRRLDAAADFLGV 127

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD  + P N+G I+RS  A     ++ T   +        ++++G++  +P +  +   
Sbjct: 128 LLDRPSSPGNVGTIIRSVDALGGHAVVVTGHATDPYDPQAVRASTGSVFGVPIVSAAAPR 187

Query: 197 DALQKMHSWGFQTIG-----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + L+ +       +          +++ +        + L+ G E  GL    ++ A  +
Sbjct: 188 EVLEWVDGVRRAGVPLRLVATDERAERDVWDHDLTGPVLLLTGNETTGLSQAWRDAADDV 247

Query: 252 AHLHM---------PGIIKALNVSNAAAVALYITQNHFAK 282
             + M                      A+ LY       +
Sbjct: 248 VRIPMAGSASSLNAASAT--------TAI-LYEAARQRLR 278


>gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 186

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      + L +G E  G  P   E A ++A++   G + +LNV+ A A+AL   +  
Sbjct: 118 HRAPLEGDVCLAVGGEDHGCSPALLEAADAVAYIPQIGRVGSLNVAVATAIALAEARRR 176


>gi|119577976|gb|EAW57572.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_b [Homo sapiens]
          Length = 158

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVAL 273
               + +      L+LG EG GL  + Q +   +  +     +P  +++LNVS AA + L
Sbjct: 46  MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL 105

Query: 274 YITQNHFA 281
           +   +   
Sbjct: 106 HSICSQRK 113


>gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 52/207 (25%), Gaps = 10/207 (4%)

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D  L        K   P      +                    L A   +   + +   
Sbjct: 224 DVLLTKGISRIKKRASPTVRWVSLKLIPFFFKPTGCVDVWEPKVLRAAMGAHFRLPILPS 283

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESA----VLAKSASGALEHIPYIRISNLTD 197
              ++I + L  A+             S   +          A          +  N+  
Sbjct: 284 LAWNDIESRLTEALTVHIADSSCGSHASQEMADGSASHKPSRAGDFGWVSTRGKTKNMRY 343

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAH 253
                 S G           K   +       AL++G E  G+ P+    A         
Sbjct: 344 EEYDSDSDGEDEEHHPRVDSKLYHENWAQTPAALVIGGETHGVSPEAVRLAGKTGGHRLF 403

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + +   + +LN + AA++ L+  +   
Sbjct: 404 IPIVPNVDSLNSAMAASILLFEGRRQL 430



 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            + D  Y +     +   ++ S  +          + L G   +  AL+  +       +
Sbjct: 79  QIDDLRYERALPGDKRLGRLVSIARSRTFREHQGKILLEGRRLICDALDAGAVPQMVFFS 138

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           T + L  L  D        +  V  + I            +A+ + P      D   +  
Sbjct: 139 TADRLRELPLD--KLRRATLIKVKNEDIKVWSDLVTPQGVIAIFSRPDPLTFPDRRPSVP 196

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC 159
           L +V D++ DP N+G +LR A A  C
Sbjct: 197 LSLVCDNIRDPGNLGTMLRCAAAAGC 222


>gi|10439014|dbj|BAB15401.1| unnamed protein product [Homo sapiens]
 gi|31417389|gb|AAH09416.2| MRM1 protein [Homo sapiens]
 gi|48146831|emb|CAG33638.1| FLJ22578 [Homo sapiens]
          Length = 155

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVAL 273
               + +      L+LG EG GL  + Q +   +  +     +P  +++LNVS AA + L
Sbjct: 43  MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL 102

Query: 274 YITQNHFA 281
           +   +   
Sbjct: 103 HSICSQRK 110


>gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 154

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C+  +      P E A L ++     E+      
Sbjct: 1   MLAVVLFEPEIPPNTGNIIRLCANTGCELHLVEPLGFPLEDARLRRAGLDYHEYAALTVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT-S 250
            N     Q     G + + +++ S +P           L+ G E +GL  +   + A   
Sbjct: 61  KNWAACRQA--LVGRRMLAMTTRSSRPAFALAFAPGDVLVFGPESRGLPAEVLADFADSE 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SNA AV ++     
Sbjct: 119 RLRLPMLPGQRSMNLSNAVAVTVFEAWRQ 147


>gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17]
 gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17]
          Length = 290

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +     +            +AL+ G E  GL  +  +      H+       +LN++
Sbjct: 100 PWPVMPPDQAATAAASHCGQGTVALVFGRENHGLSNEELQRCHYHIHIPSNPDYSSLNLA 159

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 160 MAVQVMCYELR 170


>gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 162

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H   +   + T           +    ++ +          D   L+ G E  GL    
Sbjct: 58  YHDLAVVTVHKTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADV 117

Query: 245 Q--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q  E  T    + M    ++LN++N+A++A++     
Sbjct: 118 QQDEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQ 154


>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
 gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
          Length = 180

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A GA +
Sbjct: 17  FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRP 242
            + +  + N   A++K+   G   I +       +  + +     K A+I G E KG+  
Sbjct: 77  SVAWEYVENTLSAVEKLKEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +    +  +  +   G   +LN+S +A +A++       K
Sbjct: 137 EVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176


>gi|256028810|ref|ZP_05442644.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766714|ref|ZP_06526092.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289718269|gb|EFD82281.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 96

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           P  +    +K A++ G EG G+             + +    ++LNV+ A  + LY  +
Sbjct: 32  PYNKIELKEKNAIVFGNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFR 90


>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
 gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
          Length = 176

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +    A + K+A GA 
Sbjct: 17  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAE 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  +A+  + + G+    +       +  E    KN K A+++G E KG++
Sbjct: 77  FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIVMGNEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++   N   
Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176


>gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio]
          Length = 1083

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 206  GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +      + + + L+     +K  L+LG E +G+     +       +   G+ ++LNV
Sbjct: 1003 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 1062

Query: 266  SNAAAVALYITQNH 279
              +AA+ ++     
Sbjct: 1063 HVSAALLVWEYTRQ 1076


>gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 191

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +      + + + L+     +K  L+LG E +G+     +       +   G+ ++LNV
Sbjct: 111 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 170

Query: 266 SNAAAVALYITQNH 279
             +AA+ ++     
Sbjct: 171 HVSAALLVWEYTRQ 184


>gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio]
          Length = 241

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +      + + + L+     +K  L+LG E +G+     +       +   G+ ++LNV
Sbjct: 161 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 220

Query: 266 SNAAAVALYITQNH 279
             +AA+ ++     
Sbjct: 221 HVSAALLVWEYTRQ 234


>gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9768]
 gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11222]
 gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11074]
 gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9301]
          Length = 151

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE KGL     +  A+   ++ M    ++LN++ +  + +Y     
Sbjct: 96  YIFGAESKGLPQTVLDAYASQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 181

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++      P N G  +R      C+  +        + +      +G   H       
Sbjct: 29  FRVMFHEPRIPPNTGNAIRMVAGTGCELHL--VGPLGFDLSEPKLRRAGLDYHDLASVTV 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSM 251
           +             +    ++ +              L+ G E  GL     E    T+ 
Sbjct: 87  HENLEAAWDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQ 146

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNAAAV  Y     
Sbjct: 147 VRIPMVPGRRSLNLSNAAAVVTYEAWRQ 174


>gi|241895530|ref|ZP_04782826.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|55274184|gb|AAV48972.1| hypothetical RNA methyltransferase [Weissella paramesenteroides]
 gi|241871232|gb|EER74983.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 202

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + H   +    L D   +     +            + Q     K   + G E  GL 
Sbjct: 98  EHISHHRILDYQKLFDRWHEEGYTIYAVDNTPGYELHNVFQVKFPKKSVFLFGEEQIGLA 157

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277
            +  + A  M ++   G +++LNVS A  +   LY  Q
Sbjct: 158 DELIQAADQMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195


>gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 170

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + +VL     P N G I+R+   + +   +I    +   E  V       + +      
Sbjct: 1   MIHVVLYEPEIPQNTGNIMRTCVASGAALHLIEPLGFILDEKRVKRSVMDYSDDLNLTRH 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
           +   +          + T              I    I L+ G E  G+      E    
Sbjct: 61  LDWESFLKTVKGPVFYLTRYGEYTHSDFDYSAIVETDIYLVFGKESTGIPKSILKENYDH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN  A+ ++      
Sbjct: 121 CFRIPMAPNARSMNLSNTVAICVFEVLRQI 150


>gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 156

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G  +R          +        +   L ++     E  P    
Sbjct: 1   MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +L  AL    +   +   L++   +             + G E  GL P+         
Sbjct: 61  DDLPAALAATGAPPERIFALTTQGARSAAGMQYQRGDVFVFGRETAGLSPEHVALFAPGQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 149


>gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 286

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 23/259 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY ++     + R  ++           ++ A+          L     L  +      
Sbjct: 14  ADYTRLTDVALRRRLETRRGLYMAESSKVITRAVAAGHAP-RSFLMAPRHLDEMRPVIAS 72

Query: 88  PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNS 132
                        PV   P + ++ I G       LA    P L+   +          +
Sbjct: 73  ATGCAGRDDGGDVPVFVAPEEVLESITGFHLHRGALAAMNRPELASVPELLSAARGGAGA 132

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  + + RI
Sbjct: 133 RRVAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRI 192

Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  +              +      +            ++A++LG EG GL  +T 
Sbjct: 193 ERWPAMDELHAQGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTI 252

Query: 246 ETATSMAHLHMPGIIKALN 264
             A  +  + M G + +LN
Sbjct: 253 AEADEVVRIPMAGAVDSLN 271


>gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 154

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  +  
Sbjct: 1   MFHIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLKPMIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SM 251
            +L + L        +    ++ SKKP           L  G+E  GL  +         
Sbjct: 61  ESLEEFLGSNLQCKERFFFATTKSKKPYFSVEFRAGDFLFFGSESFGLPNELMNLNEAHQ 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKPYGRSLNLATSVGIVSYEALRQ 148


>gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 150

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL     E    T+   + M    ++LN+SNAAAV  Y     
Sbjct: 87  YQPGDVLLFGPEPTGLAQDVLEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQ 143


>gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 167

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKS 179
              +    +   + +V D++++  NIG++ R A AF  + +I   +           ++S
Sbjct: 5   HYTSNFKKQKHPITLVCDNISNAPNIGSLFRIADAFGIEELIFCGKDVSLGKRMTKTSRS 64

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
               + H     I ++   L+  + +        +              IA+ILG E  G
Sbjct: 65  TEKYVTHKIEENIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQPIAVILGDENFG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +         ++ H++M G   ++NV  A ++ LY       
Sbjct: 125 VSDDIINLCDAVIHINMYGNNSSMNVVQATSITLYELTKQLN 166


>gi|149642437|ref|XP_001510423.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 199

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALYI 275
                 +    L++G EG GL  + ++    + ++     +   I++LNVS AA + L+ 
Sbjct: 132 CLDFRWDRPTVLVIGNEGSGLSAEVKDACQVLLNVSPGREITSGIESLNVSVAAGIILHS 191

Query: 276 TQNHF 280
             +  
Sbjct: 192 ICSQR 196


>gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans
           A8]
          Length = 156

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G  +R          +        + A + ++     E  P    
Sbjct: 1   MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  + Q       
Sbjct: 61  DTLQEALADTGAAPSSIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEHQAMFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis]
 gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis]
          Length = 216

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
                  A +LG EG GL  K  E      ++   G    +LNV+ AA++ L+  
Sbjct: 90  HPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGRGTASLNVTVAASIVLHHF 144


>gi|254702266|ref|ZP_05164094.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
          Length = 159

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L + L   + P N G ILR A        +            L ++    LE     R
Sbjct: 1   MELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + + LS+ +  P       +   L+ G E  G+     + A   
Sbjct: 61  HPDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADER 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
             + M    ++LN + + A+          +K
Sbjct: 121 LLIPMVRSARSLNRAVSVAMTTGEALRQIRSK 152


>gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491]
 gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 163

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 2/156 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +      Q  +VL     P N G I R   A      +            L ++      
Sbjct: 1   MHQGNKMQFHIVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWN 60

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKT 244
           H+      NL+  ++            +                 L  G E  GL     
Sbjct: 61  HLEVYEWENLSSFMESSLLEIPHCYLTTKSQTPYY-NAPLKKGAYLHFGREDAGLDSTLL 119

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    + M    ++LN++ +  + LY      
Sbjct: 120 SHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQR 155


>gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
 gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
          Length = 254

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 78/219 (35%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 2   LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 61

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 62  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+  +      L K+          
Sbjct: 122 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALT 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                          ++A+++G EG+GL  KT   A   
Sbjct: 182 DDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYC 220


>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
 gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
          Length = 191

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   ALILG E KG++    + +     +   G   +LNVS  A + ++      
Sbjct: 134 DRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRL 188


>gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 174

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 4/153 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G + R+    +C   +        +   L  +      ++
Sbjct: 7   MSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 66

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                  L D   +     +      + + +        D   L+ G E  GL       
Sbjct: 67  DINYYDGLEDFFARNKGPFYYFT---TKAPQRYTDIQYPDGAYLVFGREDAGLPEALLAA 123

Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M    ++LN+SN+ AV +Y     
Sbjct: 124 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 156


>gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium]
          Length = 207

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 K  K+A+  G EG G+     E +    ++ M GI+++LN+  ++ + LY    
Sbjct: 125 HEADYTKYTKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEITK 184

Query: 279 HF 280
             
Sbjct: 185 QR 186


>gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
          Length = 1628

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1561 QFCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1618


>gi|163791737|ref|ZP_02186126.1| rRNA methylase [Carnobacterium sp. AT7]
 gi|159872997|gb|EDP67112.1| rRNA methylase [Carnobacterium sp. AT7]
          Length = 84

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L++G EG G+  +  +  T   ++ + G  ++LNV+ AA V ++
Sbjct: 35  LVMGNEGNGMSAELLKRTTKNLYIPIVGQAESLNVAVAAGVVMF 78


>gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 150

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G             +       + G +    ++ +K+        +   ++ G E +G+ 
Sbjct: 47  GMDYWHLVDLKIWESFEEFLETNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIP 106

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +       + M  + ++LN+SN+A + LY      
Sbjct: 107 EDILNKNPERCVTIPMIPMGRSLNLSNSAVIILYEAYRQL 146


>gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
 gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
          Length = 157

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G   R+  A      +        E + L ++     ++I      
Sbjct: 1   LQVVLVSPQIPGNTGTTARTCAAVLAGLHLVKPLGFSIEDSKLKRAGLDYWKYIVVKVHE 60

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +    L        +      +   K             L+ G+E  GL P+  E  ++ 
Sbjct: 61  SWPHFLDYFRQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAPEIHEECSTG 120

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
                   + M    ++ LN+S +  + +Y      
Sbjct: 121 VHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQL 156


>gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
 gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
          Length = 169

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++ + K   +        ++ G E  G+ 
Sbjct: 48  GMDYWKDLDVTTYINYQDFLDKNPGAKIYMATTKAHKVYTEVDYEQDCYIMFGKESAGIP 107

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +       + M G I++LN+ N+ A+ LY     
Sbjct: 108 EEILVDHEEDCMRIPMIGDIRSLNLGNSVAIVLYEALRQ 146


>gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase lin0934
 gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL
           J1-023]
          Length = 169

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +L +  +K     F  I          ++    N     + G E  GL  +  +    
Sbjct: 61  YDSLDEFFEKNAGGEFYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEE 120

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   I++LN+SN AAV  Y     
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera]
 gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera]
          Length = 217

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                      S L                  +D+   + Q       A +LG EG GL 
Sbjct: 49  STSHLRFRHFHSLLDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLS 108

Query: 242 PKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
            K  E      ++    G   +LNV+ AA++ L+  
Sbjct: 109 VKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHF 144


>gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 152

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 45/139 (32%)

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +  P   G +       +C G+          +          +++          D   
Sbjct: 5   LFQPDIAGNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNS 64

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + +   + + L++    PL +        L+ G+E  G      + A+    + +    
Sbjct: 65  FLSTRPERRVLLTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADF 124

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++ +A +AL      
Sbjct: 125 RSLNIAVSAGIALAEALRQ 143


>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 180

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A GA +
Sbjct: 17  FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRP 242
            + +  + N   A++K+       I +       +  + +     K A+I G E KG+  
Sbjct: 77  SVAWEYVENTLSAVEKLKEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +   T+  +  +   G   +LN+S +A +A++       K
Sbjct: 137 EVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176


>gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
 gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
          Length = 156

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLHVVLFEPEIPPNTGNIIRLCANTGFHLHLVEPLGFELDDKRLRRAGLDY--HEFAAVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
            +             +   L++  +    +        L+LG E +GL  + + T     
Sbjct: 59  IHPDLETCLSQIEPRKVWALTTKGRTSHVEADFQAGDVLLLGPETRGLPEEVRMTIPQGE 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ +Y      
Sbjct: 119 WLRMPMKADSRSLNLSNACAIVVYEAWRQL 148


>gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
 gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
          Length = 162

 Score = 74.5 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 1/152 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  + + L     P N G I R  V  + +  I +K      S  + ++     EH+  
Sbjct: 8   NNFNIAIALYRPEIPANTGNIGRLCVGLNIELHIVSKPSFIISSKEVRRAGLDYWEHLVL 67

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-A 248
           I+  N    L+  ++   + I ++   K   ++   ++   L+ G E  GLR    E   
Sbjct: 68  IKHENENTFLEYCNNNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLRESLWENDL 127

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  ++ M   I+++N+SN AA+  Y    H 
Sbjct: 128 DNSIYIPMSDNIRSINLSNTAAITAYEAYRHI 159


>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
 gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
          Length = 183

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A++ G E KG++ +    +     +   G   +LNVS  A + ++      
Sbjct: 130 AVVFGNEVKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTRKL 180


>gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
 gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
          Length = 173

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +V  +   P N G I+R+  A      +        +   + ++ +  +  + Y+ 
Sbjct: 1   MAIHLVQFNPEIPQNTGNIMRTCAATDIKLHLIKPMGFTLDEKSIKRAGANYVNEVDYVV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TAT 249
             N  + ++K     F                   ++   ++LGAE  G+  +       
Sbjct: 61  YENWDEFVEKNKGGKFCFCTRYGQKNHTEMDFSNPEEDYYIVLGAESCGIPKEILRPYFE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   + M   +++LNVSN AA+  Y     
Sbjct: 121 NCFRIPMTNKVRSLNVSNVAAILAYEALRQ 150


>gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays]
 gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays]
          Length = 286

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  PL++    D+  L+LG E +G+         +   +   G++++LNV  + A+A++ 
Sbjct: 218 NSMPLDRFGFPDRTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWE 277

Query: 276 TQNH 279
               
Sbjct: 278 YTRQ 281


>gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 150

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL +   P+N G I R A+   C   +        +   L ++     +H+     
Sbjct: 1   MLNIVLINPEIPNNTGNIGRLALGSGCRLHLVKPFGFKIDDTRLKRAGLDYWQHLDVQYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            N  D  +K  +   +   LSS   K        + + L+ G E KGL  +  E     +
Sbjct: 61  DNTEDFFKK--NAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQL 118

Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
             + +    I++LN++NA  +  Y       
Sbjct: 119 YKIPLFSEHIRSLNLANAVGIVAYEGIRQLN 149


>gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 168

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 4/153 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G + R+    +C   +        +   L  +      ++
Sbjct: 1   MNEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L +   K     +      + + +        D   L+ G E  GL       
Sbjct: 61  DISYYDSLDEFFAKNSGPYYYFT---TKAPQRYTDVSYPDGAYLVFGREDAGLPEALLAA 117

Query: 248 AT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M    ++LN+SN+ AV +Y     
Sbjct: 118 NQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 156

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G  +R          +        + A + ++     E  P    
Sbjct: 1   MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  + Q       
Sbjct: 61  DTLQEALDDTGADAGSIYALTTHAQRSVADIAFKPGDVFVFGRETAGLSDEHQAMFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
 gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
          Length = 155

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + G E  GL  + Q+    T    + M    ++LN++N+A++A++     
Sbjct: 91  YRPGDVFMFGPESVGLPAEVQQDPHVTERVKIPMKPGRRSLNLANSASIAIFEAWRQ 147


>gi|237843303|ref|XP_002370949.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|211968613|gb|EEB03809.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|221481851|gb|EEE20221.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
 gi|221502350|gb|EEE28083.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 840

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 3/146 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L  V    N+G ++R+A A   DG+      +   +  + + + G   ++P+   S 
Sbjct: 657 ILALGGVRYVWNVGILVRTAAALGFDGVYYVDGTADPFNWKVMEISRGLHYNLPHFHGSV 716

Query: 195 LT--DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                  ++               +       K+  I  ILG E  GL     +      
Sbjct: 717 ENLLRMCEESDLLPIAADTTGERPEAFQGAVTKHRGICCILGNESHGLSELILQRC-RRV 775

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M  ++ +LNV  A  + +Y  + 
Sbjct: 776 ALPMSSLLDSLNVGIAGGIVMYEMKK 801


>gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           L2-6]
          Length = 168

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 6/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G + R+    +C   +        +   L  +      ++
Sbjct: 1   MSEKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L D   K     +      + + +        D   L+ G E  GL       
Sbjct: 61  DISYYDSLDDFFSKNDGPFYYFT---TKAPRRYTDVAYPDGAYLVFGREDAGLPEALLA- 116

Query: 248 AT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A       + M    ++LN+SN+ AV +Y     
Sbjct: 117 ADQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
 gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
          Length = 269

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 7/242 (2%)

Query: 45  QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +     + G  T+    + +       +L           D       PV       +  
Sbjct: 29  RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLSGDGPPVYLAGKDVMSA 87

Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + G      V         P     + +     L++ L  + +  N+G + R+A AF  D
Sbjct: 88  VAGFPIHRGVLAVGLRGEEPSPEALIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +               + ++GA   +P+ R  +    L          + L+    + L
Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPFARAPSGAALLDLAERHALTPLALTPGGSETL 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279
           +      +  L+LG EG GL       A     + M     +LNV+ A A+AL+      
Sbjct: 208 DALEPPARALLLLGTEGPGLPESLMARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRR 266

Query: 280 FA 281
           F+
Sbjct: 267 FS 268


>gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
 gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
          Length = 163

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ SK+        D   ++ G E  G+  +   E   +   + M   I++LN+ N+
Sbjct: 76  YMATTKSKQTYTDVEYEDGCYIMFGKESAGIPEEILLEHKETAVRIPMLEHIRSLNLGNS 135

Query: 269 AAVALYITQNH 279
            A+ LY     
Sbjct: 136 VAIVLYEALRQ 146


>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
 gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
          Length = 278

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 17/268 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++S + ++    +   L     H +   +    +    +   +        
Sbjct: 4   SRRNPLVKRLRSLSSRAGREEEGLLLLEG-THLLQELVRLKLQPAELIATERWYQRHAQL 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +    P + V  + +   +         +L     L       +++  L+VLD + D
Sbjct: 63  LVGVNQAIPRRLVTDEVLTAALSTVTPDGVASLCPYSALPLA---PKDAHFLLVLDRIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--- 200
           P N+G +LR+A+A     +       P  S  L  SA   L+   +    +   A+    
Sbjct: 120 PGNLGTLLRTALAADVQNVWLGSGVDPLGSKSLRASAGALLQLPHHRFGPDEDTAISQLT 179

Query: 201 ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                                       P  +       AL+LG EG GL P+     T 
Sbjct: 180 DELKRLAAGGMQVVATLVPGSQVPIRPVPYWELNWRLPTALVLGTEGAGLHPELLACCTH 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              L     +++LNV+ AA   L   + 
Sbjct: 240 AVTLPHSSRVESLNVAAAAVPLLLERRR 267


>gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 216

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R   L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 56  EFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 115

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  +A+  +   G+    +       +  E    K  K A+++G E KG++
Sbjct: 116 FTVDWKYVNNSVEAVDNLKKEGYVVYSVEQAEGSIMLDELTLDKTKKYAIVMGNEVKGVQ 175

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS  A + ++      
Sbjct: 176 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 214


>gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
 gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
          Length = 154

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +S+ + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++    +   L+ G E +GL  +  +   A  
Sbjct: 59  VHENFDDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDNLPAGQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147


>gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
 gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
          Length = 241

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 24/84 (28%)

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                            + +      +       +AL+ G E  GL  K  +    +  +
Sbjct: 73  CHLVFGTSTRQRMIAWPVLTPIACAEKALECPKPVALVFGREQSGLTNKELDLCNYLVQI 132

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
                  +LNV+ A  +  Y  + 
Sbjct: 133 PTNSEFNSLNVAAAVQILSYELRK 156


>gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 162

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L + L     P N G I R+  AF     +        +S +L ++          
Sbjct: 4   KPHHLKVALFEPRIPQNTGNIGRTCAAFQIPLHLIKPLGFSLDSKLLKRAGLDYW--DFI 61

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              ++   +  K+H    + IG S     PL +     +  L+ G E  GL    +E   
Sbjct: 62  DLTTHENFSAFKIHISDKRLIGFSKKDGIPLNKITFKPEDVLLFGREDTGLPEDIREACD 121

Query: 250 SMAHLHMPGI--------IKALNVSNAAAVALY 274
            M  + MPG         +++LN+S+A A+A Y
Sbjct: 122 LMVSIPMPGKADSDGSNGVRSLNLSSACAIASY 154


>gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
 gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
          Length = 155

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVA 272
            +    +      +  L+ G E  GL  +       TS   + M    ++LN++NA +VA
Sbjct: 81  HTDVTFDSIDYTREDVLLFGTEPTGLPEEVMSHPRITSRVRIPMLPARRSLNLANAVSVA 140

Query: 273 LYITQNHF 280
           +Y      
Sbjct: 141 VYEAWRQL 148


>gi|221060168|ref|XP_002260729.1| rRNA methylase [Plasmodium knowlesi strain H]
 gi|193810803|emb|CAQ42701.1| rRNA methylase, putative [Plasmodium knowlesi strain H]
          Length = 2247

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 5/183 (2%)

Query: 99   QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +  D I     V+                  +  +L++V   ++   N+  + R+   F 
Sbjct: 2065 KKFDPISDIIQVNN---EFRRTYHQLAKTKTKKKKLIVVASLIDKIPNLAGLCRTCEIFK 2121

Query: 159  CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDS 216
               +I        +      S++                           +I     +  
Sbjct: 2122 VQKLILHNANIVKDFQFQKISSTANKWMNIGEVKKGEILKYLMDKRKKNYSIVGLEQTKC 2181

Query: 217  KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              PL      +K  LILG E +GL             +   GII++LNV  +AA+ +Y  
Sbjct: 2182 SVPLNNFTFPEKTVLILGDEKEGLPASVLLFLHHCIEIPGKGIIRSLNVHVSAAITIYEY 2241

Query: 277  QNH 279
               
Sbjct: 2242 FRQ 2244


>gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 114

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALN 264
            F             +    ++    + G E  GL     +        L M   +++LN
Sbjct: 33  FFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLN 92

Query: 265 VSNAAAVALYITQNHFA 281
           +SN AA+ +Y       
Sbjct: 93  LSNTAAILVYEALRQQN 109


>gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 152

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 45/139 (32%)

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +  P   G +       +C G+          +          +++          D   
Sbjct: 5   LFQPDIAGNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNS 64

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + +   + + L++    PL +        L+ G+E  G      + A+    + +    
Sbjct: 65  FLSARPERRVLLTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADF 124

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++ +A +AL      
Sbjct: 125 RSLNIAVSAGIALAEALRQ 143


>gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 152

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L + L   +   N G ILR A        I      P     L ++    LE     
Sbjct: 2   NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +      +    G + + LS+ +  P       D   L+ G E  G+     + A +
Sbjct: 62  RHVDWNAFEDRRKKDGRRLVLLSTKAATPYTNFSFADGDILLFGRESAGVPDPVHQAADA 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G  +++NV+ + A+         
Sbjct: 122 RLTIPMQGSARSINVALSVAMVAGEAIRQL 151


>gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
 gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
          Length = 218

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     +  + V   HN  A++RS   F    +   +  +           +     + 
Sbjct: 28  QRTKHFTVATEDVYQLHNASAVMRSCDVFGIQELNIVEEVNSKSIDREIAMGAQKWVDLN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +       K   +        ++    L       K     G E +GL  +  + A
Sbjct: 88  RFHSTKSCIDHLKTKGYQIVATTPHAE-DCDLIDFDITKKSCFFFGRETEGLSQQVIDEA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ L
Sbjct: 147 DCFLKIPMVGFTESLNISVSAAIIL 171


>gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
           praevalens DSM 2228]
          Length = 161

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                            + +   +    ++ +               + G E  GL    
Sbjct: 50  YWDKLDVKYYDNLTDFFIKNKDGRFFYATTKAPNSYSDLEYEADDYFLFGKETAGLPESL 109

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E        + M   +++LN+SN+ ++ +Y     
Sbjct: 110 LESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQ 145


>gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 152

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            ++ G E +GL  +  E  + S+  + M  I ++LN+SNA AV L+  
Sbjct: 83  QRYTDVRYKKGDFIVFGKETQGLPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEA 142

Query: 277 QNH 279
              
Sbjct: 143 LRQ 145


>gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 287

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    ++     +   +  +A++ G E  GL     +      H+       +LN++
Sbjct: 100 PWPVCAPPEAAAAAAEHAGSGPVAMVFGRENHGLSNDELQRCHYHIHIPSNPDYSSLNLA 159

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 160 MAVQVMCYELR 170


>gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 134

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKT--QETATSMAHLHMPGIIKALNVSNAAAVA 272
                L          L+ G E  GL  +    +  T    + M    +++N+SNAAAVA
Sbjct: 61  HCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVRIPMLEGRRSMNLSNAAAVA 120

Query: 273 LYITQNHF 280
            Y      
Sbjct: 121 TYEAWRQL 128


>gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 165

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        + G +    ++ +              ++ G E  G+ 
Sbjct: 48  GMDYWDQLDVTTYIDYNDFLEKNPGAKIYMATTKAPNVYTDVKYEPDCYIMFGKESAGIP 107

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +           + M G I++LN+ N+ A+ LY     
Sbjct: 108 EEILVHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus
           2336]
          Length = 161

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAQIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+     +    T 
Sbjct: 59  KHKTFNEFLNTEQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMPILDNLPTTQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA AV +Y       
Sbjct: 119 KIRIPMIENSRSMNLSNAVAVTVYEAWRQLN 149


>gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii]
          Length = 348

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 281 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 338


>gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 154

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++      P N G  +R A    C+  +          A + ++      H      
Sbjct: 1   MFRIMFYQPCIPPNTGNAIRLAANTGCELHLIEPLGFSMSDAQVKRAGLDY--HEMATVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +    ++ +++            L+ G E  GL          T 
Sbjct: 59  VHPNLVTAWTTLKPERVFAFTAHAERFHTDVDYAPGDVLLFGPEPTGLPDDVLAEPEITD 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++ N++NAA++A+Y     
Sbjct: 119 RVRIPMLAGRRSHNLANAASIAVYEAWRQ 147


>gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
 gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
          Length = 186

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            ++        L+ G E  GL  +       T    L M    ++LN++NA ++A+Y   
Sbjct: 111 HDRVAYRPGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAW 170

Query: 278 NH 279
             
Sbjct: 171 RQ 172


>gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
          Length = 184

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 117 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 174


>gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 131

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L 
Sbjct: 64  HNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLA 123

Query: 275 ITQNH 279
                
Sbjct: 124 EWWRQ 128


>gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1]
 gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1]
          Length = 157

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ L     P N G I R         ++  +         L ++      ++ +  I 
Sbjct: 1   MIVALFEPEIPQNTGNIARLCAVTDTKLLLVGRLGFSISDKYLKRAGMDYWNYLDWEWIK 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQE-TAT 249
           ++ +   K ++  +    +S   KK      +E   +K  LI G E  GLR   +   + 
Sbjct: 61  SINEFFDKYNNKEYSYFFISKFGKKYYTEISREFNFNKSILIFGNESYGLREDIRNLYSD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  + M   +++LN+SN+ A+ +Y  
Sbjct: 121 RLYRIPMKEGMRSLNLSNSVAIVVYHL 147


>gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 131

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L 
Sbjct: 64  HNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLA 123

Query: 275 ITQNH 279
                
Sbjct: 124 EWWRQ 128


>gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 166

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSA-VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            L +VL     P N G I R+     +   +I    +  +E  +                
Sbjct: 1   MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
           ++      +  H   +     S  +   +     ++ + L+ G E  G+  +   +   +
Sbjct: 61  VNFEDFLEKNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKET 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN+ A+  Y     
Sbjct: 121 AVRIPMLPEIRSLNLSNSVAIVAYEVLRQ 149


>gi|325120007|emb|CBZ55560.1| rRNA methylase, related [Neospora caninum Liverpool]
          Length = 513

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L  V    N+G ++R+A +   DG+      +   S  + + + G   ++P+   S 
Sbjct: 329 ILALCGVRYVWNVGILVRTAASLGFDGVYYVDGTADPFSWKVMEVSRGLHYNLPHFHGSA 388

Query: 195 LT--DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                  ++               +      + +  I  ILG E +GL     +      
Sbjct: 389 ENLLRMCEESDLLPIAADISGERPEAFHGAVMSHRGICCILGNESRGLSEVILQHC-RRV 447

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M  ++ +LNV  A  + +Y  + 
Sbjct: 448 ALPMSSLLDSLNVGIAGGIVMYEMKK 473


>gi|270285622|ref|ZP_06195016.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 104

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE +GL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 49  YIFGAESRGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 98


>gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 156

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L   + P N GA+LR +        I              +     ++++ + R++
Sbjct: 4   LRLALFQPDIPQNAGALLRLSACLGIPLEIIEP---CGFLWDEKRMRRAGMDYVDHARVT 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                       G + + L++     L+         +++G E  G+ P+    A     
Sbjct: 61  RHASWNAFRQKPGGRLVLLTTAGGTRLDGFSFRPGDVIMMGRESAGVPPEVAAEADVTVR 120

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M   +++LNV+ AA +A+       
Sbjct: 121 IPMAPGLRSLNVALAATLAVGEGLRQL 147


>gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas
           naphthalenivorans CJ2]
          Length = 159

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        +   + ++     E+   +R 
Sbjct: 1   MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
           ++    L+       +   L++     + +        L+ G+E KGL P+ ++      
Sbjct: 61  ASWPAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLVFGSETKGLAPEVRQSFALAR 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN  AV ++     
Sbjct: 121 RLKVPMLPGQRSLNLSNTVAVTVFEAWRQ 149


>gi|3023080|gb|AAC12641.1| putative rRNA methylase [Synechococcus sp. PCC 7002]
          Length = 62

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
               D   L+ G+E K       +   +   + +    +++LN+S +AAV L+  +   
Sbjct: 2   FTYQDDDWLLFGSETKASPQXLLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQL 60


>gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 151

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE +GL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 96  YIFGAESRGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 152

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                  +   +       + G +    ++ +K+        +   ++ G E +G+  + 
Sbjct: 50  YWHLVDLVVWESYEEFVEANKGARIFYATTKTKQRYSDIEFKENDFVMFGPESRGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   + M  + ++LN+SN+AA+ LY     
Sbjct: 110 LNAHKENCITIPMIDMGRSLNLSNSAAIILYEALRQ 145


>gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
 gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
          Length = 158

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL   + P N G I R+ VA      +        ++  L ++     +H+ +  + 
Sbjct: 9   IHVVLYQPDIPQNTGNIGRTCVAVGAKLWLVRPLGFQLDAKHLRRAGMDYWQHLNWEAVD 68

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
           +L +   ++    +  +   +   + +           + G+E  GL P+  E    S  
Sbjct: 69  SLAEVQSQLQDRTWWKLTKFA--TRYVWDAELEPGQVFLFGSESNGLPPRILEEDPDSNL 126

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            L M   +++LN+++ A   +Y     F
Sbjct: 127 KLPMHQEVRSLNLASTATAVMYEAVRQF 154


>gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 150

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     L+ G E  G+     +  T+   + M   ++++N++ +A +AL      
Sbjct: 86  YDFAFRPDDILLFGKESAGVPAPVSDACTARIRIPMRPEVRSMNLAMSAGLALGEALRQ 144


>gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 150

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +K+        +   ++ G E +G+  +   +       + M  + ++LN+SN+
Sbjct: 75  FYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITIPMIPMGRSLNLSNS 134

Query: 269 AAVALYITQNHF 280
           A + LY      
Sbjct: 135 AVIILYEAYRQL 146


>gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
 gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
          Length = 237

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 17/232 (7%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     +++L T+  L +    +   H   +  V  + +   +       G+A     
Sbjct: 2   LKSGKNP-YKILVTEKWLRKNQNLSRKFHQSIINIVTEEVLASAISTI-NPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170
              P          ++VLD + DP N+G + R+A+A   D I       P          
Sbjct: 60  STIPNYKFDIKDDFVLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLGQKVLRASS 119

Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                   L    +        ++  +    +             S    KP  +   + 
Sbjct: 120 GAVFHLPFLRFDGTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSR 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
           + ALILG EG+G+  K QE       +    ++++LNV+  A  + L   + 
Sbjct: 180 RTALILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230


>gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 156

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 14/155 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P E A L ++     E       
Sbjct: 1   MFNIVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFASIKVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N    L+           L++       +         + G+E KG+  + +       
Sbjct: 61  PNWGHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDYFVFGSETKGITEEVRN------ 114

Query: 253 HLH--------MPGIIKALNVSNAAAVALYITQNH 279
            +         M    ++LN+SN  A+ +Y     
Sbjct: 115 SIPKMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQ 149


>gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus
            kowalevskii]
          Length = 1247

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +   L Q    DK  L+LG E +G+  +  +       +   G+I++LNV  + A+ ++ 
Sbjct: 1178 NSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVEIPQLGVIRSLNVHVSGALLVWE 1237

Query: 276  TQNH 279
                
Sbjct: 1238 YTRQ 1241


>gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
 gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
          Length = 169

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249
             +L +  +K     F  I                +K    + G E  GL      E   
Sbjct: 61  YDSLDEFFEKNEGGEFYYITKFGRHVYSDINYSDTNKDYFFVFGKETTGLPDALLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M   I++LN+SN AA+  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152


>gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 150

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G             +       + G +    ++ +K+        +   ++ G E +G+ 
Sbjct: 47  GMDYWHLVDLKVWESFEEFLEANKGIRIFYATTKTKQKYSDVKYKEDDYIMFGPESRGIP 106

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + +     + M  + ++LN+SN+A + LY      
Sbjct: 107 EDILNKNSERCITIPMIPMGRSLNLSNSAVIILYEAYRQL 146


>gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group]
 gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group]
          Length = 220

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 K  L+LG E +G+         +   +   GI+++LNV  + A+A++     
Sbjct: 158 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 215


>gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99]
          Length = 169

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249
             +L +  +K     F  I                +K    + G E  GL      E   
Sbjct: 61  YDSLDEFFKKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M   I++LN+SN AA+  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152


>gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
 gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
          Length = 176

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                + S ++++LD++   +NIG++ R++ AF  + I      +      + K+A G+ 
Sbjct: 16  EFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGST 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           E + +  + N  D ++K+   G +   +       +  +         A + G E KG+ 
Sbjct: 76  ETVDWEYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLPQPNTKYAFVFGNEVKGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + + ++  +   G   +LN+S +A V ++   +  
Sbjct: 136 QEVVDISDTVIEIPQYGTKHSLNISVSAGVVIWDVFSKL 174


>gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 129

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                  I  +                  L++           N  +AL++G E +GL  
Sbjct: 24  HEWARMQIWDNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPE 83

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +          L M    ++LN+SNA AV +Y     
Sbjct: 84  HVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQ 122


>gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 155

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H   +   + T      H    +    +SD               L+ G E  GL    
Sbjct: 51  YHDLAVVTVHPTLEDAWRHLQPERVYAFTSDGTASYTDIAYQPGDVLMFGRESDGLPAGV 110

Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +     T+   L M   +++LN++NAA++A+Y     
Sbjct: 111 KSDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQ 147


>gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 153

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   L+LG E  G+       A     + M    ++LNV+  A + L      
Sbjct: 88  ARFENDDHLVLGRESAGVPDALHTAADLAVRVPMVPGARSLNVAVTAGMVLAEALRQ 144


>gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16]
 gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16]
          Length = 157

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    +    +       +E  +L ++      ++    
Sbjct: 1   MSLHIVLYQPEIPANTGNIARTCAGTNATLHLIRPLGFSTEDRMLKRAGCDYWPNVTIHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250
             ++ +  +      F  I                +     + G E  GL     E  T 
Sbjct: 61  YDSIEELFETYPEGLFYYIETVGSKPYTDFDFRNTEVDHFFVFGKETTGLPNHLTEANTE 120

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +    +I++LN+SN AA+ LY     
Sbjct: 121 RCLRIPQTDLIRSLNLSNTAAIVLYEALRQ 150


>gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1]
 gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC]
          Length = 156

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVSNA 268
             LS+   +             + G+E KGL  +  +       +L M   I++LN++  
Sbjct: 75  FCLSTKGTQYYGDVFLPMDGVYVFGSESKGLPEEVLKKYHNHTYYLPMKPGIRSLNLATT 134

Query: 269 AAVALYITQNH 279
             V L+     
Sbjct: 135 VGVVLFEAVRQ 145


>gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
 gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
          Length = 173

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R+ +A      +        +   L +S    ++       
Sbjct: 1   MLHVVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TATS 250
            N    + +     +  +              K +    L+LG E  G+  K  +    +
Sbjct: 61  KNWDAFVAENPCEHYYFMTRYGKKAPSEFDFAKEEGDVYLVLGKESTGVDKKILKGHLDT 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN AA+ +Y      
Sbjct: 121 CMRLPMVANARSLNLSNCAAIIVYEVLRQL 150


>gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali]
 gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali]
          Length = 238

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 27/235 (11%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +   ++G H +  A     + I ++ +T      +    NL           + +     
Sbjct: 26  QQFLVFGDHLIEEAEKT--KSILEIYSTSLNKKGILISNNLMKDLKQTKTLFKQVAICRH 83

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +                           ++VLD + DP N+G +LRSA+AF  + ++ ++
Sbjct: 84  QNNPIVSNK-------------------VLVLDDIQDPSNLGVLLRSALAFGFNQVLLSE 124

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   +    +++ GA+ ++ + R +         +        L   +KK L  +  N
Sbjct: 125 NSASFYNEKTIRASQGAIFYLYFQRGNLEYLLQNFKNKNYKIFSSLVRKNKKTLSIDQLN 184

Query: 227 D-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 K  L+LG EG G+    +       ++     +++LNVS A ++ ++  
Sbjct: 185 KFPEDVKKILVLGNEGAGISHNIELITDYFLNIPT-KKVESLNVSVAGSILMHYL 238


>gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 177

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L++VLD+V   HN+G++ R+A AF  + +      S    A + K+A GA 
Sbjct: 16  EFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +    +   AL+++ +  +    +   +   L  E       K A++LG E KG++
Sbjct: 76  NTVTWKYFEDTHQALEELKAQAYTVFAIEQAAGSTLLPELALNPAMKYAVVLGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +       +   G   +LNVS    + ++    
Sbjct: 136 QSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFR 172


>gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13]
 gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276]
 gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276s]
 gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70]
 gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70s]
 gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           D(s)2923]
 gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13]
 gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           Sweden2]
 gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/150]
 gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/11023]
 gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC]
 gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC]
          Length = 151

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I GAE KGL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 96  YIFGAESKGLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 156

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G+E KGL  +  +    +   + M   I++LN++ +  + LY     
Sbjct: 96  YVFGSESKGLPKEILKKYYKNCLRIPMQQDIRSLNLATSVGIVLYEVVRQ 145


>gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 254

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 17/259 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
              +  +K  +S  + SR   +     L G+ TV  AL +   +  ++L    A      
Sbjct: 10  SPQNPQFKLWESALE-SRGLKKNGKFLLAGLKTVPEALRHHPERFERILFADPAQV---A 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              LP       + P     +         L      + +  L        L+    + D
Sbjct: 66  GWRLPPGVEPVQLAPALFRALDLSGTGFPLLVGAVPKMPAIDLSRPPQGLELLCA--LGD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA +F    I+  +  +        ++AS A   +  +R            
Sbjct: 124 PSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNAQFALTLLRGPRWAAVNDAAG 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                  G +  ++     +++     LILG EG+G+             +   G +++L
Sbjct: 184 PLYALDGGGADLTRFDWPADMR-----LILGEEGQGVPADCPAA---RLSVPTTGAVESL 235

Query: 264 NVSNAAAVAL---YITQNH 279
           N + A +VAL   Y     
Sbjct: 236 NATVAVSVALFARYAAARR 254


>gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 192

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++     + +++G E KG+     + +     L M G + +LN+S A  + LY 
Sbjct: 132 YRDPFPAPLVIVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLYA 186


>gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes]
          Length = 1621

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 176

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181
                    L++VLD V   +N+G++ RS  AF  + +            E    A    
Sbjct: 16  EFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGE 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            ++    +   +   + L++   + +    +   +K       ++ + A++ G E KG+ 
Sbjct: 76  DSVAWRYFASATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRHQRYAVVFGNEVKGVN 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             T +       +   G   +LNVS  A + ++    
Sbjct: 136 QTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172


>gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 195

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 5/157 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N  L +V D    P N G  +R          +        E   L ++     + + 
Sbjct: 34  NPNPPLHVVFDQPVIPPNTGNAIRMCAGVGAHLHLCEPLGFNLEEKNLRRAGLDYHDLVD 93

Query: 189 YIRISNLTDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                +L + L         G +    +S +   ++         L+ G E  GL  +  
Sbjct: 94  VTIHPSLDECLTTLGAGAPDGPKVYAFTSHTSVRVDTVPYQWGDVLLFGCEPTGLSAEAL 153

Query: 246 E--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                TS   + M    +++N+SNAAAV  Y      
Sbjct: 154 ADPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQL 190


>gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 156

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
               +   + +         ++ + +P       +   +  G+E KG+      +  +  
Sbjct: 61  WENIEEFFEHNDITCNAYFATTKTDRPYFDADFKEGDYIFFGSETKGIPEDILNKYKSQN 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  + LY     
Sbjct: 121 ITIPMTKEGRSLNLAISTGIVLYDAIRQ 148


>gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 172

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L +VL     P N G I R+  A      +        +   L ++       +    
Sbjct: 1   MRLHIVLVEPEIPQNTGNIARTCAATGAVLHLVKPYGFSLDEKHLKRAGLDYWHLVEIHE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
            ++L D L              +            ++  L+ G E KGL          S
Sbjct: 61  YASLQDFLIATEGRSLYYFSTKAPRSYCD--VRFGEESWLVFGKETKGLPEDLLAGHYAS 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M G  ++LN+SN+ A+A Y     ++
Sbjct: 119 CLRIPMCGEARSLNLSNSVAIATYEVLRQYS 149


>gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
 gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +S+ + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++    +   L+ G E +GL  +  ++  A  
Sbjct: 59  VHENFEDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEILDSLPAGQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KIRLPMMPGSRSMNLSNTVAVILFEAWRQ 147


>gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 153

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                    + T         G +   L         Q        L+ G+E +GL P  
Sbjct: 51  YWAHVAWQVHDTWDDLLAALPGARFCYLDPRGSLWYSQMDFAPGDVLVFGSESRGLPPGL 110

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E     +  + M   +++LN+++  A+ LY     
Sbjct: 111 MEERPGPVLRVPMRPGLRSLNLASTVALVLYEAYRQ 146


>gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            N +   F+ L+ +  + R            +     + +D +   E  +      T  +
Sbjct: 12  KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTNVQ-QKITPWI 66

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179
               +D      L++    ++  +N+G I R+A  F  +   I         +   LA +
Sbjct: 67  QDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAVT 126

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A   ++      I+     L              + +   +E+     K  ++LG E +G
Sbjct: 127 AMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREG 186

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +          +  +   GII++LNV  +AA++++    
Sbjct: 187 IPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 225


>gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e]
 gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland
           1988]
 gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL
           R2-561]
 gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S]
 gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161]
 gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818]
 gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL
           J2-003]
 gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e]
 gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818]
          Length = 169

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249
             +L +  +K     F  I                +K    + G E  GL      E   
Sbjct: 61  YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M   I++LN+SN AA+  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152


>gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 180

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               + L++         N+G +LR+  A      +   R      A+   +       +
Sbjct: 30  HSCWNFLIVAPLWPLHGANLGTLLRTCDAVGA--CLAVPRLPWVPEALRRGNTLRHRACV 87

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +          ++   +    + ++  + +  +          +LG E +G+  +  + 
Sbjct: 88  HWTGDPCAWLLKRRAEGFRVLGVEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDL 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   + M G   +LNV+ A ++ LY
Sbjct: 148 LDAAVEIPMVGTGHSLNVAVAGSLVLY 174


>gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 160

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
                   L+ G E  GL     + +  +  + MP           +++LN+S A  +A+
Sbjct: 88  FKFKHDDILLFGREDLGLPDYIIDKSDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAHKQIN 155


>gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase
            TARBP1-like [Callithrix jacchus]
          Length = 1626

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1559 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1616


>gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
 gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
          Length = 167

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +                 +   +   L++  K             L+ G E +GL P  
Sbjct: 61  HDYYAFLDSEGLSPDNNQSASCARVFALTTKGKPSHSNVSYRQDDYLMFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN+ AV ++      
Sbjct: 121 LDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158


>gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens]
 gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR
            RNA-binding protein 1; AltName: Full=TAR RNA-binding
            protein of 185 kDa; Short=TRP-185
 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens]
 gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct]
 gi|1586092|prf||2203267A TRP-185 protein
          Length = 1621

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 168

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R          +        + A L ++     E    +R 
Sbjct: 14  WLDVVLFEPEIPPNTGNVIRLCANTGVVLHLIEPLGFAWDDARLRRAGLDYWE-FARVRR 72

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                  +K           +        +        L+ G E +GL         A  
Sbjct: 73  HEQWQDCRKALGERRVLAFTTKAEPGSFARARFAPGDVLLFGPETRGLPADLLNQFPAEQ 132

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN+ AVA++     
Sbjct: 133 KLRLPMRPGSRSMNLSNSVAVAVFEAWRQ 161


>gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 169

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249
             +L +  +K     F  I                +K    + G E  GL  +   E   
Sbjct: 61  YDSLDEFFEKNAGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDELLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   + M   I++LN+SN AAV  Y     
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 170

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 4/151 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L H   P N G I RS VA      +            L ++     +H+ +  + 
Sbjct: 13  LHVILWHPEIPPNTGNIGRSCVAVGAKLWLVRPLGFDISEKQLRRAGLDYWQHLEWEAVD 72

Query: 194 NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
           +L +   K+     Q      +   +             L+ G E  GL  +      ++
Sbjct: 73  SLDEIRAKIPEPFEQQRVWLFTKFGQSRYSDVTYEQGDVLLFGCESAGLPEEIVSQFPSS 132

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   L M   +++LN+S++A  A+Y      
Sbjct: 133 AKLRLPMRPQVRSLNLSSSATAAMYEVIRQI 163


>gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
 gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +S+ + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++        L+ G E +GL  +  ++  A  
Sbjct: 59  VHENFEDCLKALEGRRIFALTTKGSTRPDEVSFRKGDVLLFGPETRGLPAEVLDSLPAGQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147


>gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys]
          Length = 1621

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1554 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 155

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H   +   +        H    +    +SD               L+ G E  GL  + 
Sbjct: 51  YHDLAVVTVHPGIEEAWQHLQPERVYAFTSDGTASYTDISYQPGDVLMFGRESVGLPAEL 110

Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +     T+   L M   +++LN++NAA++A+Y     
Sbjct: 111 KTDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQ 147


>gi|156101974|ref|XP_001616680.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805554|gb|EDL46953.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 2316

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V   ++   N+  + R+   F     ++               S +    +I  ++ 
Sbjct: 2168 LIVVASLIDKVPNLAGLCRTCEFFKVQKLMLHNASIVKDFQFQKISSTANKWMNIGELKK 2227

Query: 193  SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             ++   L +            +    PL++    ++  LILG E +GL            
Sbjct: 2228 GDILKYLMRKKKKYAIVGLEQTKCSVPLKRFAFPERTILILGDEKEGLPSSVLLLLHHCV 2287

Query: 253  HLHMPGIIKALNVSNAAAVALYITQNH 279
             +   GII++LNV  +AAV +Y     
Sbjct: 2288 EIPGKGIIRSLNVHVSAAVTIYEYCRQ 2314


>gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
 gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R A        +        +   + ++      H      
Sbjct: 1   MLHLVLFEPEIPPNTGNVIRLAANTGMQLHLIEPLGFDLDEKKVRRAGLDY--HALTQVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
            +   +    +    +    ++       +    +   L+ G E +GL     +T     
Sbjct: 59  IHKNWSDFLENVDYNRIFACTTKGSTRYTEVAYEENDVLLFGPETRGLPMDVLQTFPQEN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M    ++LN+SN+ A+  Y      
Sbjct: 119 WLRLPMVPDSRSLNLSNSVAIFTYEAWRQL 148


>gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +       P N GAI R+    +    +        +   + ++       +     
Sbjct: 1   MLNICFYEPEIPFNTGAIARTCGLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  D L++  +  F      +           ND+  ++ G E +GL            
Sbjct: 61  DSYDDLLKRFPNSRFYLATTKASKLYTD--VKYNDEDVIVFGPETRGLPEDLIFSNYDDA 118

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNH 279
             + M     ++LN+SN+A + L+     
Sbjct: 119 IKIPMLKNYGRSLNLSNSANIILFEALRQ 147


>gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1272

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +Q     +  L+LG E +GL          +A +   G++++LNV    A+ ++     
Sbjct: 1206 QQIQFPARAVLVLGHEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQ 1264


>gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 159

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +             L+ G E +G+     ++   + 
Sbjct: 59  KYKDFDDFLERAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGIPKAILDSLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y     F
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148


>gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54]
          Length = 156

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G  +R          +        + A + ++     E  P    
Sbjct: 1   MFHVILVCPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  +         
Sbjct: 61  DTLQEALDDTGASASHIYALTTQAQRSVGDVRFEPGDVFVFGRESAGLSAEHHALFAPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRTGQRSLNLSNAVAVTVFEAWRQ 149


>gi|330924237|ref|XP_003300564.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
 gi|311325249|gb|EFQ91337.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
          Length = 1272

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               K  L+LG+E +G+  +          +   G+ ++LNV  A  +ALY    
Sbjct: 1213 LPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWR 1266


>gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 388

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              K  L+LG+E +G+  +          +   G+ ++LNV  A  +ALY    
Sbjct: 329 LPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWR 382


>gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 164

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 1/97 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 + +    +A  K H     +   ++ +              ++ G+E KG+  K
Sbjct: 51  YWKHLDLVVWESFEAFLKEHPIDEHSYMSTTKTDNLYFNAPFKKGDYILFGSETKGIDEK 110

Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      + M G  ++LN+  +  V +Y     
Sbjct: 111 VLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQ 147


>gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905]
 gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905]
          Length = 157

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    +    +       ++  +L ++       +  + 
Sbjct: 1   MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249
             +L D +          I   SD           ++    + G E  GL  +   E   
Sbjct: 61  HDSLDDFIAYSKDGDVYLIETYSDEPFTTHDFSDKERDIYFMFGKETTGLPKEFAYERRN 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     +++LN+SN AA+ +Y     
Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|90418297|ref|ZP_01226209.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337969|gb|EAS51620.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 166

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      L+ G E  G+      TA +   + M G  +++N++ AA +A       
Sbjct: 102 YTDFTYEPGDVLMFGRESAGVTDAIHATADASVTIPMEGGGRSINLAVAAGMAAGEVLRQ 161

Query: 280 F 280
            
Sbjct: 162 L 162


>gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia
           psychrerythraea 34H]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLDVVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDY--HEFAAIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS- 250
            +             + + +++ +              L+ G+E  GL  + +       
Sbjct: 59  RHANFNAFLEKEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPDEN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KLRIPMLKESRSMNLSNATAVIVYDAWRQL 148


>gi|302832103|ref|XP_002947616.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
 gi|300266964|gb|EFJ51149.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
          Length = 279

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 1/149 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R  ++L+VL+   D  N  A LR+A       +                +A G     
Sbjct: 34  CSRTDRILLVLERCTDNQNYLACLRTAEILGVQNVWIVLSPRGM-KNEALIAADGWTSGH 92

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                S      +     G +T                  ++A+++G E  G+  +    
Sbjct: 93  LPPPPSACRRCWRMAGKSGPRTWRRRDAILLHGTALSLPARLAVVMGREADGVSREMLAA 152

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           A     L M G   + N+S A ++ L+  
Sbjct: 153 AHRRVCLPMYGFNDSFNLSVATSMVLHHL 181


>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 651

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 84/299 (28%), Gaps = 67/299 (22%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104
           + F+YG  +V AA+    RK ++L      +       +      +  +  +  D+    
Sbjct: 339 SEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAIKSTIRSLKLFHITTEVGDEYMRA 398

Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVR------------------------------- 130
                    H GL LE +P     +  +                                
Sbjct: 399 MDKASNGRPHNGLILEASPPPVLPITQLTAASIEDGAFNLSLDRQSAEDEAINGTQELYE 458

Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------- 174
                    L++ +D V D  N+GAI RSA     D I+T   ++   S           
Sbjct: 459 YKSDGWRYPLILYIDGVVDEGNLGAIARSAYVLGVDAIVTPTHHTAEWSPIAIKASSGAA 518

Query: 175 ---------VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                       +    + +    I  S+      +       ++             + 
Sbjct: 519 EAMPLFRVKEPEQFFQSSSQVGWRIYASDAVPLSTQDGQHVVYSLSQRYSPLPADHSPLA 578

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQNH 279
                L++G+E  G++    + A     +          + + NVS AA +  Y     
Sbjct: 579 EHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVAAGILCYQMMQR 637


>gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC
           29413]
          Length = 243

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   ALI G E +GL  +    A     +       +LN++ A  +  Y    +  
Sbjct: 107 SQPSALIFGREDRGLSNEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNLT 162


>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
 gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
          Length = 405

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 98/340 (28%), Gaps = 70/340 (20%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KK  +K+   K    AK +    D     S   K + T  P   ++YG H V AAL    
Sbjct: 66  KKLDDKVKRQKSLREAKKKHLMGDDYYQSSKPAKPKMTLNPLCEYVYGTHPVIAALTAKK 125

Query: 66  RKIFQLLATKNALARLDWDANLPH--PFPVKTVP-------------------------- 97
           R  F  L   N          L       +                              
Sbjct: 126 RDAFSKLFIHNTKEHTPKILKLAKNFGVKIIEKDTKGEMNVLSSNGVHNGVVLETKPLSF 185

Query: 98  ------PQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     D   G+ +V                +   T    +     ++LD + DP 
Sbjct: 186 PLISTLENDFDGETGEYSVTLMNELTGDEKSFQHTVARHTPHNYKRFPFGLLLDGITDPQ 245

Query: 146 NIGAILRSAVAFSCDGIITTKR----------------------YSPSESAVLAKSASGA 183
           N+G+I+R+A     D I+  +                       Y   ++     +   +
Sbjct: 246 NVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVRKS 305

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             ++         D L  M S     +       + L   +    + ++ G+EG G+R  
Sbjct: 306 GWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVRTN 365

Query: 244 TQETATSMAHLH-----MPGIIKALNVSNAAAVA---LYI 275
            +  +  +  L         ++ +LNV  AA++     + 
Sbjct: 366 IKFRSDYLVGLPKGRLETDEVVDSLNVGVAASLLVSKCFE 405


>gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 158

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            + T           +   L++       Q        L+ G E +G+         A  
Sbjct: 59  RHKTFEAFLQSERPKRLFALTTKGTPAHSQVQFELGDYLMFGPESRGIPMSILNSLAAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148


>gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1]
 gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +             +   L++      ++        L+ G E +GL     ++  A  
Sbjct: 59  VHENFDDCLKSLADRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  +V L+     
Sbjct: 119 KIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
 gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
          Length = 150

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G             +       + G +    ++ +K+        +   ++ G E +G+ 
Sbjct: 47  GMDYWHLVDLKIWESFEEFLETNKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIP 106

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +       + M  + ++LN+SN+A + LY      
Sbjct: 107 EDILNKNPERCITIPMIPMGRSLNLSNSAVIILYEAYRQL 146


>gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
 gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R          +        +   L ++      H      
Sbjct: 1   MLHIALYEPEIPPNTGNIIRLCANTGYFLHLIEPMGFAWDDKRLRRAGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +             +    ++  K    +        L+ G E +GL     E+     
Sbjct: 59  RHANFENFLSTIGNARIFACTTKGKAYPSEAGFIAGDVLLFGPETRGLPMSIIESLPEAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y +    
Sbjct: 119 RLRIPMLPQSRSMNLSNAVSVFVYESWRQL 148


>gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 256

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G E  GL  +       +  +       +LN++ A  V  Y  + 
Sbjct: 115 PVALVFGNETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQ 165


>gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 167

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       L+ G E  GL  + Q     T    L M    ++LN++NA +VA+Y  
Sbjct: 85  HHTDVDYERGDVLLFGRESTGLPAEVQAAPQVTDRVRLPMIPGSRSLNLANAVSVAVYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRRL 148


>gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 247

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 7/245 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQT 100
            T Q E + + G  +V A L    R I  +        +       +     +K +  + 
Sbjct: 4   RTHQGEIMIVSGKISVKAILKERKRDIEFVAILDKHNDKESRYVERIAEGLKIKRMSREE 63

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSC 159
           +D +      H G  +     +S  L+ +    L LM ++ V DP N+G I R+  +   
Sbjct: 64  MDALAT-NKTHGGYLVSCGKRISDPLNYLPKQTLSLMCIEGVTDPFNLGEICRTVASLGF 122

Query: 160 D-GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
           D  I  +  +   E+ ++  SA  +            +D                 D  +
Sbjct: 123 DGIITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSSDLKAIKAKKVVMAAAHRGDESE 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN-AAAVALYITQ 277
            L      D++ + LG   +GL     + +     +     + +L+ S  A +V  Y   
Sbjct: 183 SLLTYKLPDRVCICLGGALRGLSKSVLDISDVNVRIDYDARV-SLS-SVGACSVFAYERY 240

Query: 278 NHFAK 282
               +
Sbjct: 241 RQLEE 245


>gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 159

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 4/154 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                Q  ++L     P N G ++R          +        E   L ++     E+ 
Sbjct: 1   MNAAPQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYS 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L  AL ++       +   +      +     D  A + G E +GL     + 
Sbjct: 61  RLQVHPDLDTALARIAPKRLFALSTRA--SVRYDSVAFEDGDAFLFGPESRGLPQDVLDA 118

Query: 248 A-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L M    ++LN+SN  AV +Y     
Sbjct: 119 LPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 269

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 7/242 (2%)

Query: 45  QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +     + G  T+    + +       +L           D       PV       +  
Sbjct: 29  RQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA-DLLRGDGPPVYLAGKDVMSA 87

Query: 104 IVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + G      V         P     +       L++ L  + +  N+G + R+A AF  D
Sbjct: 88  VAGFPIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGAD 147

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +               + ++GA   +P  R  +    L          + L+    + L
Sbjct: 148 AVWLDAETCDPLYRKAIRVSAGAALTVPSARAPSGAALLDLAERHALTPLALTPSGSETL 207

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NH 279
           +      +  L+LG EG GL       A     + M     +LNV+ A A+AL+      
Sbjct: 208 DALEPPARTLLLLGTEGPGLPESLMVRA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRR 266

Query: 280 FA 281
            A
Sbjct: 267 LA 268


>gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
          Length = 243

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
             ++  L+ G+E  GL  +      S+  +   G  +++NV +AAA+ ++     
Sbjct: 182 LPERACLVFGSEASGLSEEMIRACDSVVAITQRGSTRSMNVGHAAAIVMWAHASR 236


>gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 218

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++RS  +F    +   +  +           +        
Sbjct: 28  RTTHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNAKRIDREIAMGAQ-KWVDVA 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S  +                       LE+    +K A+  G E +GL     E A 
Sbjct: 87  RHNSASSCIKSLREQGYKIVATSPHKDAHRLEEFDVTEKAAIFFGRETEGLSELVMEEAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
              ++ M G  ++LN+S +AA+ L
Sbjct: 147 DFIYIPMVGFTESLNISVSAAITL 170


>gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
 gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
          Length = 161

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S     E+      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANCGFRLHLIHPLGFQWDDKRLRRSGLDYHEYTTIKHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +  + L+         +                    L+ G E +G+      T     
Sbjct: 61  QSYAEFLESEQPKRLFALTTKGGPAHSQ--VKFQLGDYLMFGPETRGIPMAILNTMPIEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMCANSRSMNLSNSVAVTVYEAWRQL 148


>gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +S+ + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++  K   ++         + G E +GL  +  ++  A  
Sbjct: 59  VHENFEDCLKALEGRRIFALTTKGKTRPDEASFKKGDVFLFGPETRGLPAEILDSLPAER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN AAV L+     
Sbjct: 119 KLRLPMRPGSRSMNLSNTAAVMLFEAWRQ 147


>gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
 gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
          Length = 186

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            ++        L+ G E  GL  +       T    L M    ++LN++NA ++A+Y   
Sbjct: 111 HDRVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEAW 170

Query: 278 NH 279
             
Sbjct: 171 RQ 172


>gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
 gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G ++R A    C   +        E  +L ++     E+    R 
Sbjct: 1   MFRIVLVHPEIPPNTGNVIRLAANTGCALHLIEPLGFAMEDRLLKRAGLDYHEYAEVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    L +      +   L++     +          L+ GAE  GL P  +       
Sbjct: 61  ADWEAFLSEERPNPERMFALTTRGTGVVHDSAFLPGDWLVFGAETSGLPPGVRAQFAPER 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 QLKLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 154

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V      P N GAI R+         +        + + L ++       +     
Sbjct: 1   MLNIVFYEPEIPFNTGAIARTCGLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  + ++K     F      +  K         D   ++ G E +GL          + 
Sbjct: 61  DSYDELVEKYPDSNFYLASTKAKKKYTD--VEYKDGDFIVFGPETRGLPEDLIFANYDNA 118

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN+A + L+      
Sbjct: 119 IRIPMLKDFGRSLNLSNSANIILFEALRQL 148


>gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
 gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
          Length = 157

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TA 248
                      +   +   T     +          +++I  I G E KGL  + +E   
Sbjct: 60  WDSFEEFLENTEDKHYYLITKFGEKNYSNFDFSNKNDEEIYFIFGRETKGLPKEFREKYN 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M   +++LN+SN AA+ +Y       
Sbjct: 120 NQCLRIPMSDKVRSLNLSNTAALIIYEALRQQN 152


>gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
 gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
          Length = 157

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I+R       D  +      P +SA + ++      H     
Sbjct: 3   FMLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +           G +   L++      ++        L+ G E +GL     ++  A 
Sbjct: 61  TVHENFDDCLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAA 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    +++N+SN  +V L+     
Sbjct: 121 QKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 150


>gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
 gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
          Length = 157

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I+R       D  +      P +S+ + ++      H     
Sbjct: 3   YMFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFAKL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +           G +   L++      ++    +   L+ G E +GL  +  ++  A 
Sbjct: 61  AVHENFEDCLKALEGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDSLPAG 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    +++N+SN  AV L+     
Sbjct: 121 QKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 150


>gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
 gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
          Length = 179

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +  S L++VLD++   +N+G+  R+  AF  + I+            + K+A GA E 
Sbjct: 18  KQIEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATES 77

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK 243
           + +       DAL+++   G+    L    +    QE + D    IAL+ G E  G+  +
Sbjct: 78  VEWEHYPQTVDALKELKKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E    +  +   G   +LN+S    ++++   
Sbjct: 138 VLELCDHVLEIPQLGTKHSLNISVTLGISVWHMM 171


>gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
 gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
          Length = 284

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +        L+LG EG+GL P+  +  T    L     +++LNV++AA   L   + 
Sbjct: 214 PYWELDWRLPTVLVLGNEGRGLHPELLDCCTHGVTLPHSPAVESLNVASAAVPLLLERRR 273


>gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo]
 gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo]
          Length = 222

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               N+K+A+  G E  GL  +  E A     + M G  ++ N+S A A+ +Y
Sbjct: 126 NFPINNKMAVFFGTELTGLSSEVLEAADLCIKIPMYGFTQSYNISVAVAIVMY 178


>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 176

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 17  EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  +A+  + + G+    +       +  E    K+ K A+++G E KG++
Sbjct: 77  FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIVMGNEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++   N   
Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176


>gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3]
          Length = 241

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LTGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
 gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
          Length = 150

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+             +  K             ++ G E +G+      +       +
Sbjct: 63  EEFLEANKGIRLFYATTKTKQKYCD--VKYKKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M  + ++LN+SN+A + LY      
Sbjct: 121 PMIPMGRSLNLSNSAVIILYEAYRQL 146


>gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
          Length = 170

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 45/154 (29%), Gaps = 5/154 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I+R          +        +   L ++     E     +
Sbjct: 8   HMLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQ 67

Query: 192 ISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             +    L+     G     L    +                L+ G E +GL     +  
Sbjct: 68  HHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNM 127

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M    +++N+SN+ AV ++      
Sbjct: 128 PPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 161


>gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 169

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 4/157 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD    + L ++ D+   P N G  +R          +        +   L ++      
Sbjct: 9   LDLWPVAHLHVIFDNPVIPPNTGNAIRMCAGSGATLHLVEPLGFTLDEKHLRRAGLDY-- 66

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H     I +           G +    ++ +     +       AL+ G E  GL     
Sbjct: 67  HDLANVIIHPDLDACLAALTGSRVFAFTTQASAYFHEIAYERGDALLFGTEPTGLPESHA 126

Query: 246 ET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                T    + M    +++N+SN+AAVA Y      
Sbjct: 127 HHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQL 163


>gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 175

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  + S G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS  A + ++      
Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174


>gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 226

 Score = 73.7 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++  LI G E  GL  +    A S  ++   G  +++NV+ AAA++++
Sbjct: 157 LPERAVLIFGQESNGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMH 206


>gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 156

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +   Y+         + + +        ++ +K+            ++ G E +G+  
Sbjct: 51  WKDVQLYVWEDFEHFFKENIENRNVNLYFATTKTKRRYSDVNYGKNDYVMFGPESRGIPE 110

Query: 243 KTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279
           +           + M  + ++LN+SN+AA+ LY     
Sbjct: 111 EILNRYKENNITIPMLPLGRSLNLSNSAAIILYEALRQ 148


>gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii]
          Length = 270

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           ++++ L+ G+E  G   +    AT    + M    ++LNVS +A +AL+   + + ++
Sbjct: 210 DERLVLVFGSEKTGPSGEFAGVATESVSIPMNPAAESLNVSVSAGIALHRRARRNLSR 267


>gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
 gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
          Length = 154

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFHIVLVHPRIPQNTGSIGRMCFNVGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SM 251
            +L + L+       +    ++ SKKP           L  G+E  GL  +         
Sbjct: 61  ESLEEFLRSNLQCKERFFFATTKSKKPYFSVKFRAGDFLFFGSESFGLPNELMNLNEAHQ 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKPYGRSLNLATSVGIVSYEALRQ 148


>gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           3523]
          Length = 155

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPLGFELEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                A     +   +    ++ +K+   Q   +    L+ G E +GL     E      
Sbjct: 59  IYKNFAEFYQKNEDKKIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPVDVLELLKQTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMYKNSRSLNLSNSVAVILYGALNNI 147


>gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
 gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
          Length = 159

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA-T-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             D  A + G E +GL     +         L M    ++LN+SN  AV +Y     
Sbjct: 96  FEDGDAFLFGPESRGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 157

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N  AI+R+         I              +     +           
Sbjct: 12  IALYEPDIPQNTAAIIRTCACLGAKLEIIEPCGFHLSDKRFKRVVMDYM--DWDKINIYQ 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +           + + +++ +     +        ++ G E  G+     +       + 
Sbjct: 70  SSDKFFKAKKNQRIVLMTTKASVSYTEFKFEKNDTILFGRESSGVPESVHQLINDRLKIP 129

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    ++LN++++ A+ L  +   
Sbjct: 130 MSEDTRSLNIASSVAIILAESLRQ 153


>gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis
            carolinensis]
          Length = 1589

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 2/183 (1%)

Query: 99   QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                KI+  +     + LE       T     NS+L++V   ++ P N+G + R+   F 
Sbjct: 1398 DVQKKIIPWKDSIPDVDLELVFQDRATKLCKSNSKLIVVASLLDKPTNLGGLCRTCEIFG 1457

Query: 159  CDGIITTKRYSPSESAVLAKSASGALEHI--PYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               +I    +   +      S S                    QK            +  
Sbjct: 1458 VSALIVGSIHYIHDKQFQYLSVSAEQWLSLLEVKPFQLADYLEQKKIEGYTIIGVEQTAK 1517

Query: 217  KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               L +    +K  L+LG E +G+     +   +   +   G+I++LNV  + A+ ++  
Sbjct: 1518 SCDLTEYSFPEKSLLLLGNEHEGIPANLIQQLDTCVEIPQQGVIRSLNVHVSGALLIWEY 1577

Query: 277  QNH 279
               
Sbjct: 1578 TRQ 1580


>gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
 gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
          Length = 248

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                +                   +  +S     +         A+I G E +G    +
Sbjct: 104 WLDVEVWNCAKDCIQALRSRGYRIAVTSTSHDTVSICDMDWTIPTAVIFGNEHEGASDYS 163

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +  + M G++ +LNVS AA + +
Sbjct: 164 TSQADILCGIPMFGMVDSLNVSVAAGILM 192


>gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 258

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--- 95
           +  H +    + L G H +  AL   +     + + K A   L  D        ++    
Sbjct: 11  RRWHEAAAGTVLLDGFHALKHALRFGAEVRIAVTSDKAAALALADDLAGDLTAVIEERLV 70

Query: 96  -VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAIL 151
            V  +T+  +V +       AL         LD       S  ++VLD+  +  N+GA++
Sbjct: 71  EVSAKTLRDLVPRVHPTGVAALAVRRDRRGNLDELAGPSRSAPVVVLDNPRNLGNVGAVV 130

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  F   G++TT    P     +   A                             + 
Sbjct: 131 RLAAGFGVAGVVTTGDIDPWHPNAVRSGAGLHFATAVER---------LTSDDLPPGPLY 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                 + +   +  D   L  G+E  G+ P+ ++ AT +  L M   + + N++ + A+
Sbjct: 182 ALDAEGEDIRSVVIPDDALLAFGSERHGISPEVRKRATRLVALPMRPQVSSYNLATSVAM 241

Query: 272 ALYI 275
           AL+ 
Sbjct: 242 ALFH 245


>gi|313619703|gb|EFR91323.1| RNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 104

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALN 264
            +            ++    N     + G E  GL  +  +        + M   I++LN
Sbjct: 11  FYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEENCLRIPMTDHIRSLN 70

Query: 265 VSNAAAVALYITQNH 279
           +SN AAV  Y     
Sbjct: 71  LSNTAAVLAYEALRQ 85


>gi|156396442|ref|XP_001637402.1| predicted protein [Nematostella vectensis]
 gi|156224514|gb|EDO45339.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V   +N   N+G + R+   F    ++       ++      S S +          
Sbjct: 12  LVVVASLINKAPNLGGLCRTCEIFGAKRLVLGSNEVMNDPYFKGLSVSSSKWVDIEQVRP 71

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251
              +           ++     +             K  L+LG E +G+  +  +   + 
Sbjct: 72  AELNNYLDAMRHDGYSLIGVEQTANSKRLTDFTFPHKTLLLLGNEKEGIPVELIQQLDAC 131

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH--FAK 282
             +   G+I++LNV  + A+ ++        +K
Sbjct: 132 VEIPQVGVIRSLNVHVSGALLIWEYTKQCILSK 164


>gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 172

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +            + ++     +++      + 
Sbjct: 3   IVLYQPEMPYNTGNIGRSCVITNTTLHLIKPLGFEISDKHIKRTGLDYWKYVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D ++   S         +D K         +   ++ G E +GL  +           +
Sbjct: 63  EDFMENKGSGKIYFATTKTDRKYSD--VQFEEDDYIMFGPESRGLPEEILNRYKEQNITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M  I ++LN+SN+A + LY       
Sbjct: 121 PMLKIGRSLNLSNSAVIILYEALRQQN 147


>gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
 gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
          Length = 177

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 4/162 (2%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  +A + +   ++L     P N G I+R A    C   +            LA++
Sbjct: 1   MRAFRAAEARQRAMFHIILFEPEIPPNTGNIIRLAANTGCHLHLVEPLGFVLTDKALARA 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                 H       +      +      +   L++ +++  +        A + G E +G
Sbjct: 61  GLDY--HDLARVTVHTDWPACRAFLGERRVFALTTRAQRRHDTVDFRPGDAFLFGPESRG 118

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L P+ +E+        L M    +++N+SNA AV ++     
Sbjct: 119 LPPELRESLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQ 160


>gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma]
          Length = 210

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L     S  +++LD + DP N G +LRSA AF    I  +       +    + + GA+ 
Sbjct: 45  LKFSGFSDKILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIF 104

Query: 186 HIPYIR----ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++ + R                  G      +  S   +    K  KIALILG EG+G+ 
Sbjct: 105 NLDFFRGDLANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYKIALILGNEGQGIS 164

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +++ +  +  +    ++++LNV+ A ++ ++   
Sbjct: 165 VISRQKSDYLIAIPTTNLVESLNVAVAGSIIMFYMW 200


>gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824]
 gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum
           ATCC 824]
 gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018]
          Length = 160

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGI-IKALNVS 266
               ++      +    N    +I G E  GL  + +E+       + M     ++LN+S
Sbjct: 81  FYFSTTHGNGFYDDVKFNQGDFIIFGRESCGLPDEIRESDPDRCIRVPMVKTSTRSLNLS 140

Query: 267 NAAAVALYITQNHF 280
           N  A+  Y     F
Sbjct: 141 NTVAIVAYEAIRQF 154


>gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640]
 gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
 gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha710]
 gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06]
 gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           N1568]
 gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           OX99.30304]
 gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M13399]
 gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M0579]
 gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           CU385]
 gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240013]
 gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           H44/76]
 gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240149]
 gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M04-240196]
 gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           NZ-05/33]
          Length = 154

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++        L+ G E +GL     ++  A  
Sbjct: 59  VHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 162

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
            +    L+     G  +  L    +                L+ G E +GL P   +   
Sbjct: 61  HDYFAFLENEGLTGASSARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPPYVLDNMP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M    +++N+SN+ AV ++      
Sbjct: 121 PQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQL 153


>gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 164

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I R+  A      +            L ++      H+      
Sbjct: 10  FQVVLYQPEIPQNTGNIARTCAATHTPLHLVEPLGFRITDRGLKRAGLDYWPHVRLKVHP 69

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           +L    +++    +      +D +             L  G+E  GL           + 
Sbjct: 70  DLESLCREIGDRRWVYFSAHADRRYCD--FRFQPGDCLFFGSESFGLPNDLLVSRPGFVI 127

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNHFA 281
           ++ +    +++LN++ +  +AL+       
Sbjct: 128 NIPINRARVRSLNLATSVGIALFEALRQLT 157


>gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 164

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A    C   +        +   + ++     E+   +R 
Sbjct: 1   MFNIVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           ++    L        +   +++     +          L+ GAE +GL P  +E+     
Sbjct: 61  ASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDVRESFPMAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN  AV ++     
Sbjct: 121 RLRVPMQPGQRSLNLSNTVAVTVFEAWRQ 149


>gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 253

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 16/231 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107
           +G       L +      +++A    L R    A          P   V  + ++++  K
Sbjct: 30  FGEFPTLELLTHRPEHALRVVAHTKGLGRRGVAAVRARCEARGLP-FEVNDRAVERLSHK 88

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             V            +  L   RN  LL+   + +D  N+G I+R+ + F    +     
Sbjct: 89  GNV---YLFGVFAKYAAPLARERNHLLLV---NPSDNGNVGTIVRTMLGFGVRDLALIAP 142

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +  + +++ GA      +  +          +   +         K L +     
Sbjct: 143 AVDLFNPHVVRASMGA---TFAVNFAYFASLEVYRAAHAHRLYPFMLGGAKRLGEVRFEA 199

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              L+ G EG GL    +        +    ++++LN++ A  VALY    
Sbjct: 200 PYTLVFGPEGAGLPEAYRAF--ESVQIPQSPLVESLNLAVAVGVALYEAAR 248


>gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
 gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
          Length = 159

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R  V  +    I            + ++       +  +  
Sbjct: 1   MFNIVLVHPQIPQNTGSIGRMCVNANLKLHIIKPTVFDISEKAVRRAGLDYWARLNPVIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            +L + L     +  +    ++ + K   +        L  G E  GL  +  E   +  
Sbjct: 61  ESLDEFLHANAQFEDRFFYATTKAHKFYFEAEFKKGDFLFFGGESTGLPMELMERNFANA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +A +  Y     
Sbjct: 121 IKIPMGEHGRSLNLATSAGIIAYEAIRQ 148


>gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC
           51908]
          Length = 254

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 105 LTGPVAIVFGRENNGLTNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|328865936|gb|EGG14322.1| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            fasciculatum]
          Length = 1689

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281
             +   K  L+LG E  G+             +   GII++LNV  + ++ L+  +Q    
Sbjct: 1614 FVFPTKCLLLLGQEQNGIPSDFLNLVDYCVEIPQFGIIRSLNVHVSGSIVLWEYSQQQIL 1673

Query: 282  K 282
            K
Sbjct: 1674 K 1674


>gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 155

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    +        +   L ++     +++    
Sbjct: 1   MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249
             +  +  +K     F                   D   ++ G E  GL  + ++ +   
Sbjct: 61  YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYRDGDFIVFGRESSGLPDEIRD-SDPS 117

Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279
               + M     ++LN+SN  AV  Y     
Sbjct: 118 KCIRIPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 181

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 3/156 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               +++VLD+V   +NIG++ R+A AF  + I      +      + K+A GA E + +
Sbjct: 24  EKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTALGATESVTW 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246
               ++   L+++H    +TI +          +       K ALI G E +G++ +   
Sbjct: 84  AYEKDILQLLKELHQSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVEGVQQEVVS 143

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  +   G   +LN+S +A + ++       K
Sbjct: 144 LCGKAIEIPQYGTKHSLNISVSAGIVMWEIGQKIRK 179


>gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 287

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 23/259 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            DY  +     + R  ++           +  A+          L        L      
Sbjct: 14  ADYTSLTDVALRRRLETERGLYMAESSKVIVRAVEAGHAP-RSFLMAPRWYDELRPVIAA 72

Query: 88  PHP---------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNS 132
                        PV   P   ++ I G       LA    P L    +          +
Sbjct: 73  ATGCQGRDDGGGVPVFIAPEPLLESITGFHLHRGALAAMNRPALPSVGELLASARGGAGA 132

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + + VL+ + D  N+GA  RSA A   D ++ T   +        + + G +  +P+ RI
Sbjct: 133 RRVAVLEDLVDHTNVGAAFRSAAALGIDAVLVTPHCADPLYRRSVRVSMGTVFQVPWTRI 192

Query: 193 SNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +     +              +      +          + ++A++LG EG GL P+T 
Sbjct: 193 DHWPALDELHAGGFTVAALALSEDSVSLGEFSASPACSGADSRVAVVLGTEGDGLAPRTI 252

Query: 246 ETATSMAHLHMPGIIKALN 264
             A ++  + M G + +LN
Sbjct: 253 AAADAVVRIPMAGAVDSLN 271


>gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
 gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
          Length = 233

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 10/168 (5%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +   + N+   +VL     P N G I+R          +        +   L ++   
Sbjct: 57  FYSEKYLINAMPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLD 116

Query: 183 ALEHIPYIRISNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
             E        +          +        G +   L++  K         +   L+ G
Sbjct: 117 YSEFADIKHHHDYYAFLESEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYREDDYLMFG 176

Query: 235 AEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E +GL P   +         + M    +++N+SN+ AV ++      
Sbjct: 177 PETRGLPPYVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQL 224


>gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a]
          Length = 218

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  GAE  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGAELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 151

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      L+ G E  GL  + +     TS   L M   +++LN++NAA++A+Y   
Sbjct: 82  YTDIEYQAGDVLMFGPESVGLPAEVKTDPHVTSRVRLPMLPGLRSLNLANAASIAVYEAW 141

Query: 278 NH 279
             
Sbjct: 142 RQ 143


>gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090]
 gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02]
 gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18]
 gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140]
 gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19]
 gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11]
 gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18]
 gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1]
 gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332]
 gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679]
 gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035]
 gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2]
 gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA
           1090]
 gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 154

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MLTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++        L+ G E +GL     ++  A  
Sbjct: 59  VHENFDDCLKSLAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  +V L+     
Sbjct: 119 KIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
 gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
          Length = 171

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R+ +A +C   +            L ++    ++ + Y   
Sbjct: 1   MINVVLYEPEIPQNTGNIMRTCMAMNCRLHLIEPMGFKITDKSLKRAGMDYVKELDYKIY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETATS 250
            +            +        +      +    K   L+ G E  G+      +    
Sbjct: 61  PDWQTFYNMHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDKHILHDNYDR 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN  A+ +Y   +  
Sbjct: 121 CVRIPMVAQARSLNLSNCVAICVYEVLDQL 150


>gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 176

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD V   HN+G++ R+  AF  + +      S    A + K+A GA 
Sbjct: 16  EFKQADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPPMAEIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLR 241
           + + +       +A++ + + G++   +       + Q        K A++LG E KG+ 
Sbjct: 76  DSVTWKYFDTALEAVETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKYAVVLGNEVKGVH 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   ++NVS    + ++    +  
Sbjct: 136 QEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIWHFAKNII 175


>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 206

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFAK 282
             A+I G E KG++    + +     +   G   +LNVS  A + ++       AK
Sbjct: 145 PCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAKMKLAK 200


>gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL
           J1-208]
          Length = 160

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQ-ETAT 249
             +L +  +K     F  I               ++K    + G E  GL      E   
Sbjct: 61  YDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDSNKDYFFVFGKETTGLPDSLLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M   I++LN+SN AA+  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 152


>gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 242

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   +E  N  +A+I G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMLAPRECGERCVKEAANKPVAVIFGRERTGLTNEELQKCDYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVCYEIR 157


>gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum
           Iowa II]
 gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum]
 gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium
           parvum Iowa II]
          Length = 214

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277
                    A +LG EG GL  K  +    + H+ + G    +LNV+ A ++  +   
Sbjct: 99  YPHPFKRSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGTASLNVAIAGSIVFHHFA 156


>gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502]
 gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis]
          Length = 213

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQ 277
                    A +LG EG GL  K  +    + H+ + G    +LNV+ A ++  +   
Sbjct: 99  YPHPFKRSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGTASLNVAIAGSIVFHHFA 156


>gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 243

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
             ++  L+ G+E  GL  +       +  +   G  +++NV +AAA+ ++     
Sbjct: 182 LPERACLVFGSEASGLSEEMIRACDIVVAITQRGSTRSMNVGHAAAIVMWAHASR 236


>gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
          Length = 188

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL H   P N G + R   A      +        +   L ++      H+P    
Sbjct: 30  MMHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVW 89

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S+  D L +           +             D   L+ G E  GL  +  +      
Sbjct: 90  SSWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRV 148

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
            + + G ++++N+S A  V LY  
Sbjct: 149 CIPIWGEVRSINLSTATGVVLYQA 172


>gi|255626589|gb|ACU13639.1| unknown [Glycine max]
          Length = 218

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT 276
            Q       A +LG EG GL PK  E      ++    G   +LNV+ AA++ L+  
Sbjct: 88  NQHPFTKSTAFLLGNEGTGLSPKEIEICGFFVYIPQYGGGTASLNVTVAASIVLHHF 144


>gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 157

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I+R       D  +      P +SA + ++      H     
Sbjct: 3   FMFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFASL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
                         G +   L++      ++        L+ G E +GL     ++  A 
Sbjct: 61  TVYENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAA 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    +++N+SN  AV L+     
Sbjct: 121 QKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 150


>gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 6/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +      P + A + ++     E+      
Sbjct: 1   MFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQET- 247
            +    L                                    + G+E +GL P+ +E+ 
Sbjct: 61  QDWDQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +    L M    +++N+SN  AV +Y     
Sbjct: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQ 153


>gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
 gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
          Length = 175

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  + S G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLNKTKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS  A + ++      
Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174


>gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
 gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
          Length = 154

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L     P N G I+R      C   +        +   L ++             
Sbjct: 1   MLQVALYEPEIPPNTGNIMRLCANTGCALHLIKPLGFALDDKQLRRAGLDY--REFANVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + +           +   LS+   +   QE       L+ G E +GL     +      
Sbjct: 59  VHDSLDAMVAALDKPRIWTLSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSLIDELGVHR 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SNA A+ LY      
Sbjct: 119 CLRVPMRPDSRSLNLSNATALVLYEGLRQL 148


>gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 542

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              I +++G E +G+  K +E A    +L M G  ++ N+S A A+ L
Sbjct: 422 QRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATAITL 469


>gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
 gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
          Length = 234

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +   +A++ G E  GL  +    A  +  +       ALN+S A A+ L+      +
Sbjct: 100 FPRTRSVAILFGRESTGLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRS 158


>gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
 gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
          Length = 227

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           K+A+  G E  GL     E A     + M G  ++ N+S A A+  Y   +   K
Sbjct: 137 KLAIFFGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSVAVAIVFYSLISRLKK 191


>gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40]
          Length = 218

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 253

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 16/237 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-------LPHPFPVKTVPP 98
           PE + L G H +  AL   +     + + K A   L  D               V+    
Sbjct: 18  PETVLLDGFHALKHALRFGAEVRAAVTSDKAAAVELAADLADDLTETIADLLVEVEAGTL 77

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + +   V    V               L     +  ++VLD+  +  N+GA++R A  F 
Sbjct: 78  RDLVPRVHPTRVAALAVRRGRQGNLDELSKRPRAAPVVVLDNPRNLGNVGAVVRLAAGFG 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++TT    P     +   A                       +     + +     +
Sbjct: 138 ATGVVTTGDIDPWHPNAVRSGAGLHFATAVER---------LPGDALPEGPLYVLDAEGE 188

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +      D   L  G+E  G+ P+ ++ AT +  L M   + + N++ + A+AL+ 
Sbjct: 189 DIRSVTIPDDALLAFGSERHGISPELRKRATRLVALPMRPQVSSYNLATSVAMALFH 245


>gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 153

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  +VL     P N G I R   A +    +            L ++     EH+    
Sbjct: 1   MQFHIVLHQPRIPQNTGNIGRLCFASNTILHLIYPLGFSLTQKELKRAGMDYWEHLEVYE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETAT- 249
            ++     +             +   K    +      A +  G E  GL  +       
Sbjct: 61  YADTESFFKSYFIDSNLPHFFLTTKTKIPYYKAPMQAGAYLHFGREDAGLSQEILSANQE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M    ++LN++ +  + LY     
Sbjct: 121 YCYTIPMQNNARSLNLATSVGIVLYEGIRQ 150


>gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 150

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     L+ G E  G+    +    +   L M   +++LN++ +A +AL      
Sbjct: 86  YDFAYRPDDILLFGKESAGVTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQ 144


>gi|119936308|gb|ABM06104.1| hypothetical protein LOC79922 [Bos taurus]
          Length = 178

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALYI 275
               + +    L+LG EG GL    Q +   +  +     +P  +++LNVS AA + L+ 
Sbjct: 68  CLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHS 127

Query: 276 TQNHFA 281
             +   
Sbjct: 128 ICSQRK 133


>gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 180

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 20  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 79

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  +   G+    +       +  E    K  K A+++G E KG+R
Sbjct: 80  FTVDWKYVENSVEAVDNLKKEGYVVYSVEQAEGSIMLDELALDKEKKYAVVMGNEVKGVR 139

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS  A + ++      
Sbjct: 140 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 178


>gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
 gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
          Length = 218

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 159

 Score = 73.7 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 1/144 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL H   P N G + R   A      +        +   L ++      H+P    
Sbjct: 1   MMHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++  D L +           +             D   L+ G E  GL  +  +      
Sbjct: 61  ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRV 119

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
            + + G ++++N+S A  V LY  
Sbjct: 120 CIPIWGEVRSINLSTATGVVLYQA 143


>gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 152

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I R+ V       +            L ++     EH+  +  
Sbjct: 1   MFNIVLISPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +L + +  +    +  I   +  K         D   LI G E +G+      E    +
Sbjct: 61  DSLEEFMDYVKDKRYFLIETGTQKKYSD--VNFEDGDFLIFGREKEGIPDDLLNENKEKI 118

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNH 279
             + M   I  +LN++N+ ++ LY     
Sbjct: 119 ITIPMTKKIDRSLNLANSVSIVLYEALRQ 147


>gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
 gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
          Length = 154

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +      P +   L ++      H     I + 
Sbjct: 4   IILYQPEIPPNTGNIIRLCANTGMQLHLVKPLGFPLQDKQLLRAGLDY--HEFAQIIVHD 61

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + A    +    +   +++  K+  ++       A + GAE +GL     +T        
Sbjct: 62  SWADCCHNLRDHRMFAITTRGKQGYDKVSYAAGDAFLFGAESRGLPSHIMDTFPEQRRIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SN  A+  Y     
Sbjct: 122 VPMVANSRSLNLSNTVAIIAYEAWRQ 147


>gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 150

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N G I R  V       +            L +S      H+     
Sbjct: 1   MLNIVLVEPEIPNNTGNIGRLCVGTESRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +++ + ++ +       +   S ++K   +    D   L+ G E  GL     +   +  
Sbjct: 61  ADIEEWIETVPDRSRVFLMS-SHAEKSYLETDFQDGDWLVFGKESAGLSKDVLDRFDNHL 119

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M  +I++ N++N+ A  +   +   +
Sbjct: 120 TIPMSKLIRSFNIANSVAFVIGEAKRQLS 148


>gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M6190]
 gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           ES14902]
 gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           961-5945]
 gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           G2136]
 gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240355]
          Length = 154

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E +GL     ++  A     L M    +++N+SN  AV L+     
Sbjct: 91  FQKGDVLLFGPETRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
 gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
          Length = 220

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            A         S L                  ++    + +       A +LG EG GL 
Sbjct: 47  SAHHVRFRHFHSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLS 106

Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           PK  E      ++   G    +LNV+ AA++ L+  
Sbjct: 107 PKEMEICDFFTYIPQVGSGTASLNVTVAASIVLHHF 142


>gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
 gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
          Length = 220

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            A         S L                  ++    + +       A +LG EG GL 
Sbjct: 47  SAHHVRFRHFHSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLS 106

Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
           PK  E      ++   G    +LNV+ AA++ L+  
Sbjct: 107 PKEMEICDFFTYIPQVGCGTASLNVTVAASIVLHHF 142


>gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740]
 gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes]
          Length = 153

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L +VL     P N G I R   A      +            + ++     EH+    
Sbjct: 1   MKLQIVLVEPRIPQNTGNIGRLCAATQSALHLIHPLGFTLSQKEIKRAGMDYWEHLELYE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
            S+L    +    +G     L++ +K+   +        L  G E  GL     E    +
Sbjct: 61  WSSLEAFTEAH-PFGESHFLLTTKAKRAYFEASLPPSAYLYFGREDAGLPQVLLEAHPQA 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           M  + M    ++LN++ A  + LY     
Sbjct: 120 MLKIPMKEGNRSLNLATATGIVLYEAIRQ 148


>gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 175

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 16  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  + N  +A+  + S G+    +       +  E    K  K A+++G E KG++
Sbjct: 76  FTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + +     +   G   +LNVS  A + ++      
Sbjct: 136 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFKKL 174


>gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 162

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +  A + G E  GL          T+   + M   +++LN++N+A++ +Y     
Sbjct: 96  YRETDAFLFGPEPTGLPADVIAHPAVTAAVRIPMMPHLRSLNLANSASIVVYEAWRQ 152


>gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus]
          Length = 1579

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1512 QYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1569


>gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus]
          Length = 1534

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1467 QYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1524


>gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3]
 gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3]
          Length = 156

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +             + G+E KGL  +  +       +L M   I++LN++    V L+  
Sbjct: 83  QYYGDVALPMDGVYVFGSESKGLPEEVLKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEA 142

Query: 277 QNH 279
              
Sbjct: 143 VRQ 145


>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQNHFAK 282
           +    L+LG+EG GLR    ++ T    +      G + +LNVS    + L+       K
Sbjct: 153 SGPTILVLGSEGHGLRSLVAKSCTEFVKVPGAVDAGGVDSLNVSVTGGILLWHFLKDITK 212


>gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
 gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
          Length = 150

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +K+        +   ++ G E +G+  +   +       + M  + ++LN+SN+
Sbjct: 75  FYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITIPMIPMGRSLNLSNS 134

Query: 269 AAVALYITQNHF 280
           A + LY      
Sbjct: 135 AVIILYEAYRQL 146


>gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
          Length = 242

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   +E  N  +A+I G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMLAPRECGERCVKEAANKPVAVIFGRERTGLTNEELQKCDYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVCYEIR 157


>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 248

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 10/238 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVP 97
           H      + L G H +  A+   +     + A + A       L  D        +  VP
Sbjct: 9   HRLAGSTVLLDGFHALKHAVRFGAEVPVAVTADRAATLALADELAPDVRDALADLLTEVP 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +T    V +       AL   P     L  + ++     +  +++P N+G         
Sbjct: 69  HETYTSFVPRPHPTAVAALAVRPSRESHLARLAHTPRTAPVVVLDNPRNLGNAGAVIRLA 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G          +         GA  H              ++       +       
Sbjct: 129 AGFGATGVVTTGTVDPWHPTVVRGGAGLHFATAVER------LEVADLPAGPLFALDPEG 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +      D   L  G+E  GL P+ +  A  +  L M   + + N++ + A+ LY 
Sbjct: 183 DDIRSTKLPDDAVLAFGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMTLYH 240


>gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
 gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
          Length = 179

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 4/151 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I+R       D  +      P +SA + ++      H    
Sbjct: 24  RFMFSIVLYQPEIPPNTGNIIRLCANSGADLHLVKPLGFPLDSAKMKRAGLDY--HEFAR 81

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248
              + T         G +   L++  +   +Q         + G E +GL     E    
Sbjct: 82  ISLHETFEDCLAALEGRRIFALTTKGRTRPDQAEFRPDDVFLFGPETRGLPAAILERLPE 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L M    +++N+SN  AV LY     
Sbjct: 142 NQKLRLPMLPGSRSMNLSNTVAVMLYEAWRQ 172


>gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 224

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + G E  GL  + Q+    +    + M    ++LN++N+A++A++     
Sbjct: 160 YRPGDVFMFGPESVGLPAEVQQDPHVSERVKIPMKPGRRSLNLANSASIAVFEAWRQ 216


>gi|301096896|ref|XP_002897544.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107004|gb|EEY65056.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+M    V+   N+  + R+   F+   ++        +       ++ A + +
Sbjct: 514 QRPRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWM 573

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRP 242
           P   +    D L++      +        ++              K+ L+LG E +G+  
Sbjct: 574 PLEEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPV 633

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  +       +    ++++LNV  + A+ L+     
Sbjct: 634 EVLQLVDVCVEIPQFELVRSLNVHVSGALVLWEYTQQ 670


>gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 150

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +   +    ++ +K+        +   ++ G E +G+  + 
Sbjct: 50  YWHLVDLKIWESFEDFLEANRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEI 109

Query: 245 Q-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       + M  + ++LN+SN+A V LY      
Sbjct: 110 LNKNPERCITIPMIPMGRSLNLSNSAVVILYEAYRQL 146


>gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
 gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052
 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
          Length = 218

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 158

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFADIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T           +   L++       +        L+ G E +G+         A  
Sbjct: 59  KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIPMDILNNMPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148


>gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
 gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
          Length = 616

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 95/289 (32%), Gaps = 60/289 (20%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPP--QTI 101
           FLYG   V   L +  RK++ L               +           +  +    Q +
Sbjct: 305 FLYGRSVVEETLRSSRRKLYHLYIYDGLNRSRNPNDVVIEKLAQKRGVKITKLGEGHQRL 364

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDA--------------------------------- 128
              + +   H    LE +P+  P ++A                                 
Sbjct: 365 MSKMSEGRPHNNFVLEASPVPQPPIEALGPLSEVASRPGFEVSLGHQTAEDLEINGSSNF 424

Query: 129 -----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 ++  L+++LD + DP N+G ILR+A       ++ ++R S + + V  K+A+GA
Sbjct: 425 VETEGGKHQPLVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGA 484

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI-----------GLSSDSKKPLEQEIKNDKIALI 232
            E +P     N    L      G++                          +  D   L+
Sbjct: 485 SETLPLFACDNPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLV 544

Query: 233 LGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALYITQN 278
           +G+EG+GL    +  +     +        I +LNVS AA +       
Sbjct: 545 VGSEGEGLPTMIKTKSHHAVTIPNSSGAHTIDSLNVSVAAGLLCGAFLR 593


>gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
          Length = 282

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKE 108
           + G+  V+A   +   ++ +L    +          +      P + +PP+ + ++ G  
Sbjct: 41  IAGLSAVAAVFRHEPERVVRLYYDDSMKTAAGPFCAVLARLRRPYRLLPPEEMARVAG-T 99

Query: 109 AVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +H G+     P   P L         +     ++LD V +PHN+GAI R+   F    +
Sbjct: 100 VLHGGIVAAVRPREVPDLTLETAQRWAKAGAATVLLDGVGNPHNLGAIARTLAFFGLGHL 159

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           + +   + +  +  A   +        +R         +     F  +G +  ++    +
Sbjct: 160 VLSDHPAQAGLSDAAYRVAEGGLEFLDVRRLTGAAQALRSLRPHFHVVGTALHARGIPPE 219

Query: 223 EIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
            +  D   I L+LG E  GL P T     ++  +   G I++LNVS  AA+  Y      
Sbjct: 220 AVPRDRRPILLVLGNEENGLPPPTLAACETVVTIPGGGQIQSLNVSATAAILTYSLLLRQ 279


>gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis
           MR-1]
          Length = 241

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 106 TGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 157

 Score = 73.3 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+    +    +       ++  +L ++      ++    
Sbjct: 1   MGIHVVLHEPEIPANTGNIARTCAGTNASLHLIHPLGFSTDDRMLKRAGCDYWPNVHVEH 60

Query: 192 ISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
             N+     +     F              +          I G E KGL      +   
Sbjct: 61  YDNIEQLFARFPEGEFFLIETSGEKYYHDFDYSDLEKDYFFIFGKETKGLPQDLIDKYKE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     I++LN+SN AA+ +Y     
Sbjct: 121 RCFRIPQTDKIRSLNLSNTAAILVYEALRQ 150


>gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
 gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
          Length = 163

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALY 274
                   L+ G E  GL    +E   S+  + MP        G +++LN+S A A+  Y
Sbjct: 95  FTFQRGDVLLFGREDTGLPEPVREACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154

Query: 275 ITQNHF 280
           +     
Sbjct: 155 VAGQKL 160


>gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
 gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
          Length = 289

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 6/185 (3%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  + ++ +    ++ +  A         T  +      ++ L +   P N G I+R+  
Sbjct: 99  VQNEEVEALTKTPSIDKDSAEIADHSPEKTEKSTAAPMKIV-LYNPQIPQNTGNIIRTCS 157

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               + I+           +  +    A          ++ D+L+++          SS 
Sbjct: 158 VTGAELILVKPLGFE----LSDRKLKRAGLDYWDEVKISVVDSLEEILEENDDFCFFSSK 213

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +       +    LI G+E  GL  +  ++    +  + M    + LN+SNA ++ +Y
Sbjct: 214 ATQWHTDRTYSKNSILIFGSETSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIY 273

Query: 275 ITQNH 279
                
Sbjct: 274 EAWRQ 278


>gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17]
 gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17]
          Length = 154

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        E   + ++     E+      
Sbjct: 1   MLNVVLYEPEIPPNTGNIIRLCANTGCKLHLIEPLGFTLEDKRMRRAGLDYSEYASVKVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-S 250
            +    L        +  GL++       +    +   L+ G E +GL    ++      
Sbjct: 61  KSYPAFL--HSEQPQRLFGLTTKGSHYYHEVSYQEGDYLMFGPETRGLPAPVRDALPDGH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    ++LN+SN AA+ +Y      A
Sbjct: 119 RLRVPMCAHSRSLNLSNTAALVVYEAWRQLA 149


>gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 167

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +            +      G +   L++            D   L+ G E +GL    
Sbjct: 61  HDFHAFLVSEGLSPVNSQSPSGARLFALTTKGTPAHSNVSYQDGDYLMFGPETRGLPAYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN+ AV ++      
Sbjct: 121 LDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQL 158


>gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL1A]
 gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL1A]
          Length = 166

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 10/154 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R+ +AF+    I        E   L ++      H+      + 
Sbjct: 11  VSLFEPRIPQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESF 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   +         S++       I  D   L+ G E  GL          +A + 
Sbjct: 71  DQYKNSFKNSRIIAFTKKSNNLISN--IIYKDTDILLFGREDTGLPESIINKCEIVAGIP 128

Query: 256 MP--------GIIKALNVSNAAAVALYITQNHFA 281
           MP        G +++LN+S A+ +  Y       
Sbjct: 129 MPGGENQLKTGGVRSLNLSVASGIVCYYACLQLN 162


>gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae]
 gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC]
          Length = 156

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNA 268
             LS+   +             + G+E KGL     +       +L M   I++LN++  
Sbjct: 75  FCLSTKGSQYYGDVSLPMDGVYVFGSESKGLPEDVLKKYYNHCYYLPMRPGIRSLNLATT 134

Query: 269 AAVALYITQNH 279
             V L+     
Sbjct: 135 VGVVLFEAVRQ 145


>gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4]
          Length = 241

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LSGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7]
          Length = 241

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +A++ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 105 LSGPVAIVFGRENHGLTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETR 157


>gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
 gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
          Length = 157

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+    +    +       ++  +L ++       +  + 
Sbjct: 1   MPLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQ-ETAT 249
            ++L D ++         I   SD           ++    + G E  GL      E   
Sbjct: 61  HNSLDDFIEYSRDGDVYLIETYSDEPFTTHDFSNKERDIYFMFGKETTGLPKDFAYERRN 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +     +++LN+SN AA+ +Y     
Sbjct: 121 MCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120]
 gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120]
          Length = 243

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ALI G E +GL  +    A     +       +LN+++A  +  Y    +  
Sbjct: 108 QPSALIFGREDRGLSNEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNLT 162


>gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
 gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
          Length = 154

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLIKPLGFPLDSAKMKRAGLDY--HEFASLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +           G +   L++      ++        L+ G E +GL     ++  A  
Sbjct: 59  VHENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAVQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus]
          Length = 1468

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1401 QYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1458


>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 237

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +      ++L T+  L + +  +    P  +  V  + +   +       G+A     
Sbjct: 2   LKSGKTP-SKILVTEKWLRKNENLSKKLQPSLINIVSEEVLASAISTI-NPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170
              P          ++VL+ + DP N+G++ R+A+A   D I+      P          
Sbjct: 60  SSIPNYQFNIKDDFVLVLERIQDPGNMGSLFRTALAAGVDAILLAGGAHPLSQKVLRASS 119

Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                   L    +         +       +             S  S KP  +     
Sbjct: 120 GAVFHLPFLRFDGTEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTK 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
             ALILG EG+G+  K QE       +    ++++LNV+  A  + L   + 
Sbjct: 180 STALILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230


>gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421]
          Length = 162

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSM---AHLHMP-GIIKALNVSNAAAVALY 274
            L          L+ G+E +GL       +        + +    +++LN+SNA AV L+
Sbjct: 94  CLWDFAFQPGDWLVFGSESRGLPEGLL--SDERHPVVTIPLAEPAVRSLNLSNAVAVVLF 151

Query: 275 ITQNHF 280
            +    
Sbjct: 152 ESLRQL 157


>gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM
           11486]
          Length = 232

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            K+AL+ G E  GL  +       +  +        LNVS A A+ L+       K
Sbjct: 104 GKLALVFGRESTGLTREELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWELWKIRGK 159


>gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 150

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+             +  K             ++ G E +G+      +       +
Sbjct: 63  EEFLEANKGIRLFYATTKTKQKYCD--VKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M  + ++LN+SN+A V LY      
Sbjct: 121 PMIPMGRSLNLSNSAVVILYEAYRQL 146


>gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST]
 gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST]
          Length = 1402

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q     K  L+LG E  GL  +       +  +   G++++LNV    A+ ++     
Sbjct: 1336 HQLQFPKKSVLVLGHEKNGLPAEIIRHLDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQ 1394


>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 180

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ALI G E KG+R +  +       +   G   +LNVS  A + ++
Sbjct: 122 RYALIFGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIW 168


>gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 580

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +      + + + L+     +K  L+LG E +G+     +       +   G+ ++LNV
Sbjct: 500 YWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNV 559

Query: 266 SNAAAVALYITQNH 279
             +AA+ ++     
Sbjct: 560 HVSAALLVWEYTRQ 573


>gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 149

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N+GA +R +  F  +  +        +   + ++A          R ++ 
Sbjct: 3   LALFQPDIPQNVGACIRLSACFGVELHVVEPTGFRFDDRAMKRAALDYGPLSHMTRHADW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +   +              PL   + +    L+ G E  G          +   + 
Sbjct: 63  DAFQRDRPAGRLILFTTRG--ATPLSDFVFHPDDTLLFGKETSGAPDYVHAAVDARVVIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    ++LN+S  A +AL+     
Sbjct: 121 LRPEARSLNLSVTAGIALWEGLRQ 144


>gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 158

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + L   +   N G + R+      +  I      P   A   ++    L+     R
Sbjct: 1   MTLALALYEPDIAQNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++     +   + G + +  ++            +   ++LG E  G+     E+A + 
Sbjct: 61  HASFKAFEEWRRAEGRRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADAR 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +    ++LNV+ A A+ L      
Sbjct: 121 IVIPLNEGARSLNVALAGAMILGEALRQ 148


>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
 gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
          Length = 175

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                + + ++++LD +   HNIG++ R++ AF  + I      +   +  + K+A GA 
Sbjct: 16  EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 185 EHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +    ++      L++ +   +      +       Q   N K ALI G E KG+ 
Sbjct: 76  ETVTWEYAKDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKYALIFGNEVKGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +    +  +  +   G   +LN+S +A + ++    
Sbjct: 136 QEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172


>gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 157

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYIT 276
                       L+ G E  GL P+  +   S    + M G   ++LN++NAA++ LY  
Sbjct: 87  CFWDAQYRPGDYLVFGRESSGLPPEFYDRYRSRLYRIPMNGRFHRSLNLANAASIVLYEA 146

Query: 277 QN 278
             
Sbjct: 147 LR 148


>gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group]
          Length = 1489

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E +G+         +   +   GI+++LNV  + A+A++     
Sbjct: 1427 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1484


>gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 158

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPGNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 233

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V+ ++    NIG I+RS VAF+   I    R           S             +
Sbjct: 27  MYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGRNKKE--TSFFGSMGTHGYIKIRYFTN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            +       ++         ++   P+ ++  N  IA + G EG G+  +       + +
Sbjct: 85  MIELKQYLNNNDILLYACEITNQSIPITEQPFNKDIAFLFGNEGTGISEQIINMCDKIIY 144

Query: 254 LHMPGI-IKALNVSNAAAVAL 273
           +   G    +LNVS + A+ L
Sbjct: 145 IPQYGNGTASLNVSVSCAIIL 165


>gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
 gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
          Length = 245

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   KI +  G E KGL  +  E       +        +N+S+A AV LY       K
Sbjct: 101 FLYGGKIGIFFGRESKGLSNEELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVK 160


>gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 218

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 161

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 64/152 (42%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
               +++  N ++ ++L+H+  P NIG ILR+A A     ++         S  + ++  
Sbjct: 5   HHEIINSKHNKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTR 64

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            A  ++  I +++  +A+              ++          +    ++ G E  G+ 
Sbjct: 65  SAENNLNIIFVNSWEEAINHFEKNTHFYALEKTNKSVDYTTFEYHFPCVIVCGNEKDGVS 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            K  E  T+  H++M G   +LNV+ A  + L
Sbjct: 125 NKALEKCTNHLHINMYGKNTSLNVAIATGILL 156


>gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 160

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
                   L+ G E  GL     +    +  + MP           +++LN+S A  +A+
Sbjct: 88  FKFKQDDILLFGREDLGLPDYIIDKTDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAHKQIN 155


>gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 154

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+ G E  GL   T   A       + M    ++LN+SNAAAVA+Y     
Sbjct: 89  VRYRPGDVLLFGPEPTGLDAATLADAHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
 gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
          Length = 154

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T    + M    ++LN+SNAAAVA+Y     
Sbjct: 91  YEPGDVLMFGPEPTGLDELTLADPHITEQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147


>gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 223

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 9/169 (5%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    +   L +VL     P N G+I R+  A      +        E + L ++ 
Sbjct: 29  WGEVAERDQQQRLLQVVLVSPQIPGNTGSIARTCAATCVGLHLVEPMGFKVEDSKLRRAG 88

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGK 238
                 +      +  D          +      +   +             L+ G+E  
Sbjct: 89  LDYWPFVVVRVHKSWDDFFTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLVFGSEVD 148

Query: 239 GLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
           GL     E   S           M    +++LN+S AA + +Y      
Sbjct: 149 GLPAAILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQL 197


>gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
 gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    +D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFSDGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1]
          Length = 218

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
            +    L+     G     L    +                L+ G E +GL     +   
Sbjct: 61  HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M    +++N+SN+ AV ++      
Sbjct: 121 PQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 153


>gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 261

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 20/243 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95
           H +    + L G H +  AL   +     +  T +    L     L           +  
Sbjct: 19  HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALAGELAPDVREVLAGLLTE 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILR 152
           V  +    +V +       AL   P  +  L+          ++VLD   +  N GA++R
Sbjct: 77  VSREAYASLVARPHPTAVAALAVRPSRAAGLEALAHTPRRAPVVVLDQPRNLGNAGAVIR 136

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A  F   G++TT    P    V+   A      +             ++       +  
Sbjct: 137 LAAGFGATGVVTTGTLDPWHPTVVRGGAGLHFATVVER---------LEVAGLPPGPLFA 187

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                + +      D   L  G+E  GL P+ +  A  +  L M   + + N++ + A+ 
Sbjct: 188 LDPEGEDIRGLELPDDALLAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMT 247

Query: 273 LYI 275
           LY 
Sbjct: 248 LYH 250


>gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
 gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
          Length = 154

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   +  AL+ G E +GL    ++      +  L M    ++LN+SN  ++ +Y  
Sbjct: 85  CYSSARFEEGDALLFGPETRGLPADVRDGLGTEQVLRLPMQKESRSLNLSNTVSIIVYEA 144

Query: 277 QNHF 280
               
Sbjct: 145 WRQL 148


>gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM
           13528]
          Length = 155

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V       +        +   L ++     +++    
Sbjct: 1   MSLNIVLFQPEIPQNTGNIARTCVLTGSKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             +  +  +K     F         K    +    D   ++ G E  GL  + +++A   
Sbjct: 61  YDSYEELREKYKGGTFYFSTTHG--KNFYHEAKFKDGDFIVFGRETCGLPDEIRDSAPEK 118

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
              + M     ++LN+SN  A+  Y      
Sbjct: 119 CIRVPMIKTSTRSLNLSNTVAIVAYEALRQI 149


>gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 260

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +    +       E     +AL+ G E  GL     +       +       +LN+
Sbjct: 86  HAWPMLHPRECGVKSVSEAHFAPVALVFGRERSGLTNHELQKCHFHVEIPTNPEYSSLNL 145

Query: 266 SNAAAVALYITQN 278
           + A  V  Y  +N
Sbjct: 146 AMAVQVIAYEIRN 158


>gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Taeniopygia guttata]
          Length = 198

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +      L +VL+H+ DP N+GA+LRSA     D ++ T+  S   + V++K+++GA+E 
Sbjct: 29  ERGNRQLLWLVLEHIQDPMNLGALLRSAYFLGVDRVVATRGNSCPLTPVVSKASAGAMEV 88

Query: 187 IPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                  +L   L+   + G+       +   +         +   +  + +++G+EG+G
Sbjct: 89  FDVYGTDDLQGFLKAKSAEGWEVVGTVSRPEDVEDVPVISCSEFQWDKPVIVVIGSEGEG 148

Query: 240 LRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279
           L  +TQ+    M  +     +   + +LNVS AA + L+   + 
Sbjct: 149 LSLETQQQCQRMLAIPPGRALHPGLDSLNVSVAAGILLHSICSQ 192


>gi|221503013|gb|EEE28723.1| RNA methylase, putative [Toxoplasma gondii VEG]
          Length = 2898

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 218  KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + LE    + K AL+LGAE +GL         +   +   G+I++LNV   AA+ ++   
Sbjct: 2832 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2891

Query: 278  NH 279
              
Sbjct: 2892 KQ 2893


>gi|221485609|gb|EEE23890.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2905

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 218  KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + LE    + K AL+LGAE +GL         +   +   G+I++LNV   AA+ ++   
Sbjct: 2839 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2898

Query: 278  NH 279
              
Sbjct: 2899 KQ 2900


>gi|237842689|ref|XP_002370642.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
 gi|211968306|gb|EEB03502.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
          Length = 2899

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 218  KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + LE    + K AL+LGAE +GL         +   +   G+I++LNV   AA+ ++   
Sbjct: 2833 QMLENARFDRKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2892

Query: 278  NH 279
              
Sbjct: 2893 KQ 2894


>gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 158

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+     ++     
Sbjct: 59  RHKTFETFLATEQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIPMSILDSLPMAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AVA+Y      
Sbjct: 119 KIRIPMTENSRSMNLSNSVAVAVYEAWRQL 148


>gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 150

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTFHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+             +  +         +   ++ G E +G+      +       +
Sbjct: 63  EEFLEANKGIRLFYATTKTKQRYSD--VKYEENDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M  + ++LN+SN+A + LY      
Sbjct: 121 PMIPMGRSLNLSNSAVIILYEAYRQL 146


>gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 597

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 107/350 (30%), Gaps = 83/350 (23%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            K   +          ++  +     K          +T+      +YG   V AAL   
Sbjct: 219 SKDEPREKEPARPRAHRVTHSMPERVKDNVKVPDTIPYTTPASEF-IYGTGAVEAALRCS 277

Query: 65  SRKIFQLLATKNALARL------DWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGL-- 114
            R++++L   ++    L           L     VK        +   +     H G   
Sbjct: 278 RRQLYKLYIYQSTEEELTAAKVTIRKLALSKNVAVKMAFAGWDRLMDKMSAGRPHNGCIL 337

Query: 115 ---------------------------------------------ALETAPLLSPTLDAV 129
                                                         +          +  
Sbjct: 338 EASPLPKLPVRSLQAVPSISEEYFRTELAPQTREEAAVNGTDDRIQIHHPSPPPHGTEQR 397

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               ++++LD V D  N+GAI+RS+     D I+   R S   S +  KS++GA E++P 
Sbjct: 398 HRYPIVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPI 457

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGA 235
           + + N  D +Q+    G++     +     ++ +                     +++G+
Sbjct: 458 LHVKNEVDFIQRSQQNGWRFYAADAPLPGSVQLDHIPADGDQSGAKLPITTAPSVIMMGS 517

Query: 236 EGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
           E  GL    +  A ++  +              P  I +LNVS AAA+ +
Sbjct: 518 EATGLSSHIKSHANAIISIPGARQSSILGVESDPARIDSLNVSVAAALLM 567


>gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07]
          Length = 269

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            +    +++    + S   S  +   +     +  ++N     I    +    +     D
Sbjct: 10  PSDPAIRRIIDVTKPS--RSNIKTTLIEDPEPLVQSINAGVEFIEIYFSDATPVDPKIAD 67

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
               +  P++ V    ++KI   E   +   L   P  +   D       ++VLD V   
Sbjct: 68  LCEKNRIPIRLVDYTVVNKIFKGERKAKAFGLARVPRPAKFHDIENRPGDIIVLDGVKIV 127

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI+R+++     GI+       S +      AS        I +++   A   +  
Sbjct: 128 GNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLRASRGYVFSLPIVLTDRESAASFIRD 187

Query: 205 WGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G +   L S  + PL++    + K+ L+ G+E  G   + +E A++   + M    ++L
Sbjct: 188 SGVELAVLDSHGETPLKEIGNIDRKMTLLFGSEKGGPSERLRELASTTVSIPMISSTESL 247

Query: 264 NVSNAAAVALYITQ-NHFA 281
           NVS +  V L+     + +
Sbjct: 248 NVSVSVGVTLHQRVERNIS 266


>gi|289705731|ref|ZP_06502115.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289557571|gb|EFD50878.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 256

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+ G EG GL  + +  ++++  +   G  +++N   AA +A++     
Sbjct: 178 FDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQ 234


>gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4]
 gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4]
          Length = 279

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 13/250 (5%)

Query: 45  QPENLFLYG---VHTVSAALNNPSRKI-FQLLATKNALARLDWDANL-PHPFPVKTVPPQ 99
           +       G   +  + AA           LL  +N +A L    +  P   PV      
Sbjct: 29  REGRFIAEGTVVLRMLLAAHLAGRGICAEALLLLENRVAGLQPLLDQWPDDLPVYVASAA 88

Query: 100 TIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +D I G      V    +  TAP  +  + ++    L++V   +++  N+GA+ R+A  
Sbjct: 89  VLDAIAGFHLHRGVLALGSRLTAPDATQLIASLPQRALVLVGCGISNHDNVGAMFRNATG 148

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  D ++  +           + + G++  +PY R  +    L  + + GF    L+   
Sbjct: 149 FCADAVLLDETSCDPLYRKALRVSVGSVLTMPYAREHSAIALLSALDAAGFLVAALTPSG 208

Query: 217 KKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              +           ++AL++G EG+GL             +     + +LN+  A+ +A
Sbjct: 209 TTEIGDIASGLGGQQRLALVVGTEGEGLPADVLARF-MTVRIAQSPQLDSLNLGTASGIA 267

Query: 273 LYITQNHFAK 282
           L+       K
Sbjct: 268 LHSAARALGK 277


>gi|239916760|ref|YP_002956318.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281414782|ref|ZP_06246524.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239837967|gb|ACS29764.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 234

 Score = 72.9 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+ G EG GL  + +  ++++  +   G  +++N   AA +A++     
Sbjct: 163 FDFPRACVLVFGQEGPGLSAEVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQ 219


>gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
 gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
          Length = 255

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEH 186
           +   +L+      +  +   ++++        +         E    AV A+    + + 
Sbjct: 12  KIRIVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVLESAQI 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  +  + +        +   ++   + +  +     + +   ALI G E +GL      
Sbjct: 72  VDSLPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLHSPAALIFGPEDRGLSNTELN 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            A  +  +      ++LN++ A AV  Y  
Sbjct: 132 YAQRIVRIPSSSAYESLNLAQAVAVCCYEL 161


>gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
 gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
          Length = 154

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E +GL     ++  A     L M    +++N+SN  AV L+     
Sbjct: 91  FQKGDVLLFGPETRGLPADILDSLPAAQKIRLPMQPGCRSMNLSNTVAVILFEAWRQ 147


>gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Glaciecola sp. HTCC2999]
          Length = 238

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +    + QE +   +AL+ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLTPRECGVKMVQEGQKGPVALVFGRENNGLSNEELQLCHFHVCIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A     Y  +
Sbjct: 147 AAVQTLCYEIR 157


>gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 150

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNA 268
              ++ +K+        +   ++ G E +G+      +       + M  + ++LN+SN+
Sbjct: 75  FYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDILNKNPERCITIPMIPMGRSLNLSNS 134

Query: 269 AAVALYITQNHF 280
           A + LY      
Sbjct: 135 AVIILYEAYRQL 146


>gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group]
          Length = 1695

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E +G+         +   +   GI+++LNV  + A+A++     
Sbjct: 1633 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1690


>gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
            Japonica Group]
          Length = 1727

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E +G+         +   +   GI+++LNV  + A+A++     
Sbjct: 1665 HFSFPSKTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQ 1722


>gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 179

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++        N G  +R      C+  +   R    + +      +G   H      
Sbjct: 1   MFKVMFYSPRIAPNTGNAIRMVAGTGCELHL--VRPLGFDLSEPKLRRAGLDYHDLASVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +                  ++ +              L+ G E  GL  +T      T+
Sbjct: 59  VHDDLPAAWDAVLPASVYAFTAHATVSFADVDYRPGDVLMFGPEPTGLDAETLADPHITA 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNAAAVA+Y     
Sbjct: 119 QVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 181

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 5/159 (3%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA- 183
                    L++VLD V   +N+G++ RS  AF    +      +   +  + K+A G  
Sbjct: 16  EFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGE 75

Query: 184 ----LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                ++  +   +      Q  + +  + +  S+  +            A+I+G E KG
Sbjct: 76  DSVDWKYFEHTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLDTTQHYAIIMGNEVKG 135

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++    + + +   +   G   +LNVS  A + ++    
Sbjct: 136 VKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWEFAK 174


>gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 163

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 3/156 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L    +  + + L     P N G I+R          +        E   L ++      
Sbjct: 2   LQTGLDDMINIALYEPEIPPNTGNIIRLCANAGAKLHLIEPLGFKLEDKQLRRAGLDY-- 59

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H                 +   +    ++ +K+   Q   N    L+ G E +GL     
Sbjct: 60  HEFADLKIYKNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVL 119

Query: 246 ETATSM-AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        + M    ++LN+SN+ AV LY   N+ 
Sbjct: 120 KLLEKTQLKIPMHKNSRSLNLSNSVAVILYGALNNI 155


>gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 171

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 4/158 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N  +L   +   +  NI     +             +               A++   
Sbjct: 1   MTNHIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFKTDDKHLKRAGLDYWNAVDITY 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247
           +  +    + L     +          S        ++  I L+ G E  GL     +  
Sbjct: 61  HANLDAFMEYLGDNQLYLVTKFANHVYSDIDYGNNDQDQDIFLMFGKETTGLPEAFMRAH 120

Query: 248 ATSMAHLHMPGI-IKALNVSNAAAVALYITQNH--FAK 282
                 + M    +++LN+SN AA+ +Y  Q    F K
Sbjct: 121 EDQCIRIPMDDTHVRSLNLSNCAALVIYEVQRQQSFNK 158


>gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
 gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
          Length = 276

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E     +A++ G E +GL  +         H+       +LN++
Sbjct: 101 PWPLVTPRECADRSYHESSTHPVAIVFGREDRGLTNEELHKCNYHVHIPSNPDYSSLNLA 160

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 161 AAVQVIAYEVR 171


>gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus]
          Length = 1407

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1341 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1397


>gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
 gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
          Length = 240

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 29/89 (32%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                +                   +  +      + +       A+I G E +G    +
Sbjct: 104 WLDVEVWNCAKDCIQALRSRGYRIAVTSTGHDTVSICEMDWTIPTAVIFGNEHEGASDYS 163

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +  + M G++ +LNVS AA + +
Sbjct: 164 TSEADILCGIPMFGMVDSLNVSVAAGILM 192


>gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 271

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 15/243 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + G   V A       KI +L        T  AL +        +         + +   
Sbjct: 23  VCGFEAVKALAAEHPEKISRLFFAGSRARTFGALCKYLAQRKRLYRLVQSDAELEKLCGS 82

Query: 105 VGKEAV--HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           V  + V          A               +++ D + + +N+GA++RSA  F  + I
Sbjct: 83  VHHQGVVAMIEEPCIAAVTPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIEHI 142

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKK 218
           + +   + ++    A   +        +  +   +   K  S                K 
Sbjct: 143 VISGEDAQAQLTPSAYRIAQGGMEFITLYTAPSAEHFLKACSGYLMRLGADHRAYRSLKD 202

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYI 275
                  ++ + ++LG E  G+  + ++    +  +   G I++LNV+ A  +   AL  
Sbjct: 203 IPSLVRADEAVVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAGTLFCSALAE 262

Query: 276 TQN 278
            + 
Sbjct: 263 LRR 265


>gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           cellulovorans 743B]
 gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 160

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ V  +    +   R    E        +G             
Sbjct: 10  IVLYQPEIPQNTGNIVRTCVLTNSKLHLI--RPLGFEVTDKQLRRAGLDYWKDADISYYD 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
           +    +           ++ + K  ++        ++ G E  GL  + + +   ++  +
Sbjct: 68  SFEELREKFKDRTFYYSTTKATKYYDEVDFKQGDFIVFGRESSGLPDEIRNSEPDNLIRI 127

Query: 255 HMPGII-KALNVSNAAAVALYITQNHF 280
            M     ++LN+SN  ++  Y      
Sbjct: 128 PMVKTSLRSLNLSNTVSIVSYEATRQI 154


>gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 158

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 1/143 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL H   P N G + R   A      +        +   L ++      H+P    +
Sbjct: 1   MHIVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWA 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +           +             D   L+ G E  GL  +  +       
Sbjct: 61  SWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPD-DMLVFGPETTGLPQEVLDLTPHRVC 119

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + + G ++++N+S A  V LY  
Sbjct: 120 IPIWGEVRSINLSTATGVVLYQA 142


>gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           rubarum]
          Length = 192

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++     + +++G E KG+     + +     L M G + +LN+S A  + LY 
Sbjct: 132 YRDPFPAPLVVVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLYA 186


>gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
 gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
          Length = 154

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R      C   +        +   L ++      H      
Sbjct: 1   MFHIVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSMDEKALRRAGLDY--HEFAQIR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   LS+   +   +        L+ G E +GL    +E+     
Sbjct: 59  IWPDYPTFLQQAQPPRLFALSTKGSQGYSEVAFQPGDYLMFGPETRGLPADIRESLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  L M    ++LN+SN  AV +Y     
Sbjct: 119 VLRLPMLADSRSLNLSNTVAVMVYEAWRQ 147


>gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
 gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 26  NNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 82


>gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum]
          Length = 127

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    + L++G E  G+ P     A +   +   G +++LNV  AAAV         
Sbjct: 66  FLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAVIFGELWRAR 123


>gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 177

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +     K+AL++G E  GL  +          + + G+  + NV+NA A+ALY    
Sbjct: 113 NMHEYQFPRKVALVIGNERHGLSDEELSLMNVCLEIPVWGLPHSYNVANATAMALYEYCR 172

Query: 279 H 279
            
Sbjct: 173 Q 173


>gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542]
 gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM
           10542]
          Length = 157

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 L+ G E  GL  +       T    + M    ++LN++++A++ +Y      
Sbjct: 94  YRPSDLLVFGPEPTGLSDEVLAHPRITDQVKIPMLPSRRSLNLTSSASIVIYEAWRQL 151


>gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 182

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +++AL++G E  G+             +   G   +LNVS +A +A+Y
Sbjct: 120 PERVALVVGNEVHGVADDVIACVDRCIEIPQYGTKHSLNVSVSAGIAIY 168


>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 181

 Score = 72.9 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 69/156 (44%), Gaps = 3/156 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + L+++LD+V   +N+G++ R+  AF  + I      +   +  + K+A GA +
Sbjct: 17  FKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGATD 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRP 242
            + +    +    ++++ + G   I +    K  +  + +     + A+I G E KG+  
Sbjct: 77  SVAWEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIFGNEVKGVAQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +    +  +  +   G   +LNVS +A + ++    
Sbjct: 137 EVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWEMTK 172


>gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 159

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V      P N GAI R+         +        +S+ L ++       +     
Sbjct: 1   MLNIVFYEPEIPFNTGAIARTCGLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY 60

Query: 193 SNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETA 248
            +  D L+K              ++ +++        D   ++ G E +G+         
Sbjct: 61  KSYDDFLEKNEDEMKDGASLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPESILFNDI 120

Query: 249 TSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280
                + M     ++LN+SN+A + L+      
Sbjct: 121 EHCIKIPMLKDYGRSLNLSNSANIILFEALRQL 153


>gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
 gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
          Length = 153

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL +   P N G I R  V       I            + ++     + +     
Sbjct: 1   MFNIVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISQKAVKRAGLDYWDKLDLKVW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            ++ + L+ + +         + +    ++         I G+E KG+  K         
Sbjct: 61  ESVEEFLKNVDTNRCFFATTKTKTPYFEKK--YKKGDYFIFGSETKGIDEKILNQYKENN 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M    ++LN++ +  + LY       K
Sbjct: 119 ITIPMTNEGRSLNLAVSCGIILYEAIRQNFK 149


>gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides
           T2-87]
          Length = 173

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 2/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R+ +A      +        +   L +S    ++       
Sbjct: 1   MLHVVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQE-TATS 250
            N  + +++  S  +  +                 K   L+LG E  G+  K  +    S
Sbjct: 61  KNWEEFVKENPSDKYYFMTRYGHKAPSEFDFSDTSKDVYLVLGKESTGVDKKILKDHLDS 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              L M    ++LN+SN AA+ +Y       
Sbjct: 121 CMRLPMVASARSLNLSNCAAIIVYEVLRQQN 151


>gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SSC/2]
 gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 165

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ VA      +           ++ ++     + +     
Sbjct: 1   MLHIVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFRLNEKMIKRAGLDYWDKLDVRTY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            N  D L+K +          +           ++ + ++ G E  G+  +       + 
Sbjct: 61  INFEDFLEKNNDPKIYMATTKAKHVYSAPAYEDDEDVYIMFGKESAGIPEEILLNYEETS 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN+ A+  Y    H
Sbjct: 121 IRIPMLPHIRSLNLSNSVAIVAYEVLRH 148


>gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis]
          Length = 236

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             L        +                    +D    + +       A +LG EG GL 
Sbjct: 47  STLHLNFRHFYTLQQAHQYLKDKDSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLS 106

Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
            K  E      ++   G    +LNV+ AA++ L+   
Sbjct: 107 SKEMEICDYFVYISQYGCGTASLNVTVAASIVLHHFA 143


>gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
 gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 255

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +     +     ALI G E +GL       A  +  +      ++LN++ A AV  Y 
Sbjct: 101 HPRTTLPWLLQSPAALIFGPEDRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYE 160

Query: 276 T 276
            
Sbjct: 161 L 161


>gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 150

 Score = 72.6 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+             +  K             ++ G E +G+      +       +
Sbjct: 63  EEFLEANKGIRLFYATTKTKQKYCD--VKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M  + ++LN+SN+A V LY      
Sbjct: 121 PMIPMGRSLNLSNSAVVILYEAYRQL 146


>gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS
           6054]
 gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 423

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 110/334 (32%), Gaps = 68/334 (20%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + ++  +  +      R NH D ++ +    ++         ++YG H+V +AL +  R 
Sbjct: 85  REQRENARAERMAKSGRENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSALESGKRS 144

Query: 68  IF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG------------- 113
            + +L        +L   A   +   +     +    I+    VH G             
Sbjct: 145 SYSRLYVHNCQDRQLIKIAETKYGVKIVERSSKNDLNILCNNGVHNGVVLETKSLELNTI 204

Query: 114 -------------------------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                                    +    A       + V    L + LD + DP N+G
Sbjct: 205 HSLGACQDNEYKVTVYNDLDDAEVEIVKTVARTDPVEDEPVAKMPLGIFLDGITDPQNMG 264

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF- 207
            I+RSA  F  D I+    ++     V  K++ GA++ I     +     + ++ + G+ 
Sbjct: 265 GIIRSAYYFGVDFIVVPGSHTARLGPVANKASVGAMDLIDIYETNESLKFIDRIRANGWS 324

Query: 208 -----------------QTIGLSSDSKKPLEQEIKNDKIAL-------ILGAEGKGLRPK 243
                                      K    ++      L       ++G+EG+G+R  
Sbjct: 325 VVSTSAKPSVDEINDLKSKHEKVEQQLKNKYVDMNELPNILSQTPVLLVMGSEGEGIRTH 384

Query: 244 TQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
            +  +  +  +        I+ +LNVS A+ + +
Sbjct: 385 MKLRSDFLVGIDKGRKQDHIVDSLNVSVASGILI 418


>gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 261

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 73/240 (30%), Gaps = 14/240 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95
           H +    + L G H +  AL   +     +  T +    L     L           +  
Sbjct: 19  HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALADELAPDVREVLAGLLTE 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  +    +V +       AL   P  +  L+A+  +     +  ++ P N+G       
Sbjct: 77  VSREAYASLVARPHPTAVAALAVRPSRAAGLEALARTPRRAPVVVLDQPRNLGNAGAVIR 136

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             +  G          +         GA  H   +          ++       +     
Sbjct: 137 LAAGFGATGVVTTGTLDPWHPTVVRGGAGLHFATVVER------LEVAGLPPGPLFALDP 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + +      D   L  G+E  GL P+ +  A  +  L M   + + N++ + A+ LY 
Sbjct: 191 EGEDIRGLELPDDALLAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYH 250


>gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus]
          Length = 325

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 7/191 (3%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + +D       ++  +       +           L++V   +N P N+G I R+   F 
Sbjct: 134 KKMDPSKSTIPLYSDIFESMKESMYQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFG 193

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++        +      S S            +              ++  +  +  
Sbjct: 194 VKALVIANLDYIKDKEFQCLSVSAERWINILQVKPHELQKYLFEKKNAGWSLIGAEQTAN 253

Query: 219 PLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
            +   Q     K  L+LG E  G+         +   +   G+I++LNV   AA+ ++  
Sbjct: 254 SINLLQTKFEKKTILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIWQY 313

Query: 275 ---ITQNHFAK 282
               T   F++
Sbjct: 314 ASQHTLRQFSQ 324


>gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 150

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVS 266
                SS + +         K  LI GAE  GL              + M   ++ LN++
Sbjct: 72  NFYFFSSHATQNYTDVSYQPKDLLIFGAETHGLPESITNKWPNRCVKIPMVSGVRCLNLA 131

Query: 267 NAAAVALYITQNH 279
            +  + +Y     
Sbjct: 132 TSVGIGVYEAWRQ 144


>gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 167

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 1   MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
            +L   +  + +     I   ++          +D    I G E  GL     +E A   
Sbjct: 61  KDLAAFMDFLGARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGLPESFMREHAEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149


>gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51]
 gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 155

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L +VL     P N G + R   A      +            L ++     + +   
Sbjct: 1   MAHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIH 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249
              N  +   K            +                ++ G E KGL P+       
Sbjct: 61  IYENYAEFEAKNPQGPRYLATTKAQRLHTD--IHYQQGGYILFGKETKGLSPEILARYPE 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   L M    ++LN+SN+ AV +Y     
Sbjct: 119 TTLRLPMRADARSLNLSNSVAVVVYEALRQ 148


>gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 158

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL  +  E+        L M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NHFA 281
             + 
Sbjct: 150 RQWN 153


>gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 155

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L +VL     P N G + R   A      +            L ++     + +   
Sbjct: 1   MAHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIH 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249
              N  +   K            +                ++ G E KGL P+       
Sbjct: 61  IYENYAEFEAKNPQGPRYLATTKAQRLHTD--IHYQQGGYILFGKETKGLSPEILARYPE 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   L M    ++LN+SN+ AV +Y     
Sbjct: 119 TTLRLPMRADARSLNLSNSVAVVVYEALRQ 148


>gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
 gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
          Length = 155

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 41/150 (27%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R          +        +   L ++     +++      
Sbjct: 5   LHIVLVEPEIPPNTGNIARLCGCTGAALHLVHPLGFSVDDRSLKRAGLDYWQYLDVTHHD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +       +           S +         +    L+ G E +GL             
Sbjct: 65  SWQQLRSSLDGNRNWYGMS-SKASTSFWDVTYSHGDVLVFGPETRGLSAAILAEI-QPLT 122

Query: 254 LHMPGI--IKALNVSNAAAVALYITQNHFA 281
           + M     +++LN++    + L+       
Sbjct: 123 VPMRADAPVRSLNLATVCGITLFEALRQLK 152


>gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 167

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 1   MNHIVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
            +L   +  + +     I   ++          +D    I G E  GL     +E A   
Sbjct: 61  KDLAAFMDFLGARPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGLPESFMREHAEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149


>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
 gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
          Length = 180

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A GA +
Sbjct: 17  FKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATD 76

Query: 186 HIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            + +  + N     + L++   +        + +     Q     K A+I G E KG+  
Sbjct: 77  SVAWEYVENTLSVVEKLKEQGVYIISIEQAENSTMLNDFQSNGKQKYAIIFGNEVKGVEQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    +  +  +   G   +LN+S +A +A++   
Sbjct: 137 EVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELA 171


>gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 253

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 6/172 (3%)

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            ++ +   L         +       + + LD +    N+G+I+R+  AFS   +  +  
Sbjct: 78  MSLKEWNLLPVITHQDRDVVLEEPGSIAIYLDSIRSAFNVGSIIRTVEAFSLGSLYFSPE 137

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
               E + + K+A G  E             +             +S     +   +  +
Sbjct: 138 TPCVEHSQVQKTAMGTSE------WVTCFKDIPLTDLPKPIIALETSPCAISIYDFVFPE 191

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +L+LG E  G    T + A  +  + + G   +LNV+NA A+A    +  
Sbjct: 192 VFSLVLGNEEYGCSEATLKQADFLLQIPLCGRKNSLNVANAFAIAAGEIRRQ 243


>gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus]
          Length = 1328

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +K  L+LG E +G+             +   GII++LNV  + A+ ++     
Sbjct: 1263 YCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1319


>gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 163

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q        L+ G E  GL          T+   + M    +++N+SNAAAVA+Y     
Sbjct: 92  QVRFAPGDVLLFGPEPTGLAEDVLADPRVTARVRIPMLPGRRSMNLSNAAAVAVYEAWRQ 151


>gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
 gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++LG E  G+ P+  +       + M G   +LNV+ A ++ALY
Sbjct: 138 PTVMVLGHEQHGIPPEALDLLDECVEIPMVGTGSSLNVAVAGSLALY 184


>gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061]
 gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061]
          Length = 301

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N+K A++ G EG GL  +  E       +        LN+S+AAA+  Y    +
Sbjct: 172 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 225


>gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 155

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 2/148 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VL     P N G I R+  A      +       ++  +L ++     + +  +   
Sbjct: 1   MHVVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQFVKIVYHE 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATSM- 251
           +L D         +  +                 K    I G E  GL     E      
Sbjct: 61  SLDDFFNSSEGGEYFYLTKYGTKPHSTFDYSNVGKDYYFIFGKETTGLPKNIIEINKERA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 121 LRVPMNDKVRSLNLSNTAAILVYEALRQ 148


>gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 158

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 4/154 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  S L +V D+   P N G  +R+A        +        E   L ++      H  
Sbjct: 1   MPMSSLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDY--HDL 58

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQE 246
                +             +    ++ ++K        +   L+ G E  GL  +     
Sbjct: 59  ADLKIHKDFDACMEALPDARVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHP 118

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             T    + M    +++N+SNAA+ A+Y      
Sbjct: 119 RVTERVRIPMMPARRSMNLSNAASTAVYEAWRQL 152


>gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
 gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
          Length = 218

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +    A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLIRLRK 182


>gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 269

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 4/235 (1%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G  T+    +  +R   + +           D       PV       +  +
Sbjct: 29  RQGRFIVEGEVTLRLLFSPGARFAAESVLLAPERWPGFSDLLRGDGPPVYLAGKDVMSAV 88

Query: 105 VG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            G      V         P+    +       L++ +  + +  N+G + R+A AF  D 
Sbjct: 89  AGFPIHRGVLAVGLRGAEPVPEALVPPAPAPALVVGMVGLTNHDNVGGLFRNAAAFGADA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +               + ++GA   +P+ R ++    L          + L+    + L+
Sbjct: 149 VWLDAETCDPLYRKAIRVSAGAALTVPFARAASGAALLDLAQRHDLTPLALTPGGHETLD 208

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     +  L+LG EG GL       A     + M     +LNV+ A A+AL+  
Sbjct: 209 RLAPPSRALLLLGTEGPGLPEALMARA-RRLRIAMAPGFDSLNVATAGAIALHHL 262


>gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 258

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+ VLD++    N+G+I R+A     + I             + K+A G  E++ +   
Sbjct: 107 PLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQEYLAWEEA 166

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
             L + L+++   G++ + L + +      E   ++  A +LG E  GL P+  +    +
Sbjct: 167 PKLLECLEELKDEGYRIVALETAASASDLFEKFESEPTAFVLGNERFGLDPEVLKIIDEV 226

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G   +LNV   AAVA +     
Sbjct: 227 RIIPLRGRKNSLNVGVTAAVAGFEWMRQ 254


>gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
 gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
          Length = 169

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++  +L ++     +++    
Sbjct: 1   MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
             ++ +  +K     F  I          ++    +     I G E  GL      E   
Sbjct: 61  YDSIDEFFEKNQGGEFYFITKFGRHVYSDIDYSDTSKNYFFIFGKETTGLPDALLQENEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + M   I++LN+SN AAV  Y       
Sbjct: 121 NCLRIPMTDHIRSLNLSNTAAVLAYEALRQQN 152


>gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 151

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N G I R  V       +            L +S      H+ + + 
Sbjct: 1   MLNIVLVEPEIPNNTGNIGRLCVGTGNRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N  + + ++       +   S ++    +    +   L+ G E  GL  +      +  
Sbjct: 61  KNTQEWIDQIPDKSRVFMMS-SHAQTSYYEANFQEGDWLVFGKESVGLSKEILNLFENHL 119

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M   I++ N++N+ A  +   +   A
Sbjct: 120 TIPMSDKIRSYNIANSVAFVVGEARRQIA 148


>gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata]
          Length = 1325

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +K  L+LG E +G+             +   GII++LNV  + A+ ++     
Sbjct: 1261 YCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1317


>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 178

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L+++LD+V   HN+G++ R+A AF  + I      +      + K+A GA 
Sbjct: 18  EFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGAT 77

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           E + +  +++    ++++     + + +       +    K +     A++ G E KG++
Sbjct: 78  ETVVWEYVNDTVALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTYAVVFGNEVKGVQ 137

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + ++  +   G   +LN+S +  V ++       
Sbjct: 138 QDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWDLAMKIN 177


>gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
 gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
          Length = 158

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++      H      
Sbjct: 1   MFHIVLYEPEIPANTGNIIRLCANTGMQLHLIKPLGFELDDKKLRRAGLDY--HEWVAVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + + A         +   L++   +   +     + A + G E +GL         +  
Sbjct: 59  EHDSLADFVDSIKPGRIFALTTKGTQIYSEVSFQPEDAFLFGPETRGLPATVLADLGSER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +L M    ++LN+SN  ++ LY     
Sbjct: 119 CLYLPMQAESRSLNLSNTVSIVLYEAWRQ 147


>gi|213861517|ref|ZP_03385987.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +K+ L+LG E   L    +E       ++  G +++LNVS A  V L      
Sbjct: 25  LPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 79


>gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 119

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +K+ L+LG E   L    +E       ++  G +++LNVS A  V L      
Sbjct: 62  LPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQ 116


>gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
 gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
          Length = 301

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N+K A++ G EG GL  +  E       +        LN+S+AAA+  Y    +
Sbjct: 172 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 225


>gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 227

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +   L+ G EG GL P+    A+++  +   G  +++N ++AAAV +Y     +A
Sbjct: 171 LPEACVLLFGQEGPGLSPEALAAASAVVEITQYGSTRSINAASAAAVVMYEWCRRWA 227


>gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
 gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
          Length = 154

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T+   + M    ++LN+SNAAA+A+Y     
Sbjct: 91  YRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147


>gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 154

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T+   + M    ++LN+SNAAA+A+Y     
Sbjct: 91  YRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQ 147


>gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens]
          Length = 147

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD +    N+G ++R+        +      +P   AVL  + + A         S
Sbjct: 2   LTVILDGLRSGENVGNVIRTCETAGARVLCCGTTPAPPTPAVLKAACNAAPFVDVRREPS 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L                 ++    PL        +AL+ G E  G+ P        +  
Sbjct: 62  TLDAVRALQGRGVAVYALETTRGSVPLYDADLPAPLALVFGNELVGVHPDVLAACDGVVS 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L   G+  +LNV++ AA A+Y     
Sbjct: 122 LPTFGVKNSLNVASCAAAAVYEVVRR 147


>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 243

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +  +  +  V    +             N   +     +    F          DK+   
Sbjct: 28  SFIVESIKIV----DQIPEDFECEFVFVNEDMK-----DYKTDFKKIVFSNNLFDKLS-L 77

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               +G++          + + +    +++LDH+ DP N+G I+RSA AFS   II    
Sbjct: 78  LENPEGVSAVIKMKDKKEISSKK----VLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNN 133

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +    +++ G++  + +I +            +    + L+    K ++     D
Sbjct: 134 CVDLYNEKTIRASMGSIFRLNFIDLELEDVKDLINKDYK---LILADMDGKSVDYFKSCD 190

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L +G E  G+    ++ +     + M G I++LN + AA++ +
Sbjct: 191 KIILAIGNEANGISKSLKDLSDDFVSIKMDGEIESLNAAIAASILM 236


>gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12]
          Length = 249

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+AL+ G E +GL  +         H+       +LN++ A  + +Y  +
Sbjct: 116 QQKVALVFGREDRGLTNEELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIR 167


>gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            N +   F+ L+ +  + R            +     + +D +   E  +      T  +
Sbjct: 427 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTNVQ-QKITPWI 481

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179
               +D      L++    ++  +N+G I R+A  F  +   I         +   LA +
Sbjct: 482 QDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAVT 541

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A   ++      I+     L              + +   +E+     K  ++LG E +G
Sbjct: 542 AMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREG 601

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +          +  +   GII++LNV  +AA++++    
Sbjct: 602 IPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 640


>gi|222149356|ref|YP_002550313.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221736340|gb|ACM37303.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 161

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++ ++     S L + L   + P N G ILR A        I            L ++  
Sbjct: 1   MTNSITGTSPSTLRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDLSDRNLKRAGM 60

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             L  +   R  N         + G + +  S+ +  P  +        L+ G E  G+ 
Sbjct: 61  DYLAAVTLTRHVNWAQFEDWRKNSGRRLVLASTKAAMPYTELAFQPDDILLFGRESAGVP 120

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + A +   + M    +++NV+ +AA+        
Sbjct: 121 DHVHDGADARILIPMVEGQRSINVAMSAAMIAGEALRQ 158


>gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 156

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL   + P N G I R+ VA      +        ++  L ++       + Y+ + 
Sbjct: 6   LHVVLYQPDIPQNTGNIGRTCVAVGARLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVVD 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMA 252
           +L D  +++    F  +   +   + + +        L+ G+E +GL P   E     M 
Sbjct: 66  SLNDVREQLPGHDFWYVENPA--PRRIWEAEFKPGSVLVFGSESRGLPPAVIEECRGQMI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            L M   +++LN+++    A+Y      
Sbjct: 124 DLPMRPEVRSLNLASTVNTAVYEAIRQI 151


>gi|325120191|emb|CBZ55745.1| putative RNA methyltransferase, TrmH family domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2918

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             LE      K AL+LGAE +GL         +   +   G+I++LNV   AA+ ++    
Sbjct: 2853 MLENATFERKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTK 2912

Query: 279  H 279
             
Sbjct: 2913 Q 2913


>gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
          Length = 172

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 4/154 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   ++        N G  +R+  A  C+  +            L ++      H 
Sbjct: 14  CHDRRMFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDY--HD 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                 + + A         +    ++ +         +    L+ G E  GL   T   
Sbjct: 72  LASVTVHASLAHAWEALSPARVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLAD 131

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              T    + M    ++LN+SNAAAVA+Y     
Sbjct: 132 THITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 165


>gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS]
          Length = 156

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G  +R          +        + A L ++     E  P    
Sbjct: 1   MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L  AL    +   +   L++ ++  L           + G E  GL            
Sbjct: 61  DTLPQALAATGAAAPRIFALTTRARTSLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 149


>gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           selenitireducens MLS10]
          Length = 163

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+         +       ++  +L ++       +    
Sbjct: 1   MSIHVVLYEPEIPANTGNIARTCAGTHSHLHLIHPLGFSTDDRMLKRAGCDYWPSVKVEH 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLR-PKTQETAT 249
             +      +     F  I    +           D+    + G E  GL    T     
Sbjct: 61  HDSFDALYSRYPEGAFYFIETIGEKNVYDFDYSDPDQDYFFVFGKETTGLPGELTARFEE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +    ++++LN+SN AA+ +Y     
Sbjct: 121 HCFRIPQTDLVRSLNLSNTAAIVVYEALRQ 150


>gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae]
          Length = 169

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T   +  T    + M    ++LN+SNAAAVA+Y     
Sbjct: 106 YQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 162


>gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae]
 gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 158

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T   +  T    + M    ++LN+SNAAAVA+Y     
Sbjct: 95  YQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 151


>gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus]
 gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus]
          Length = 890

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 824 YCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 880


>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           DKIA++ G+E  GL  +       +  + M     ++N+  AAAV LY    
Sbjct: 109 DKIAILFGSEKTGLSNEALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVR 160


>gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 155

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPSVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +      +    ++ S+KP           L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENIIHKNRFFFATTKSQKPYFDVEFQKNDFLFFGSESYGLSMELMQLNWQNA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
          Length = 272

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N+K A++ G EG GL  +  E       +        LN+S+AAA+  Y    +
Sbjct: 143 NNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKN 196


>gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
 gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
          Length = 246

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 14/229 (6%)

Query: 58  SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
              L N    + ++       KN    +  D    +   +              +   + 
Sbjct: 22  IELLKNKPDLVLRVYIKSNSYKNKGIGIIDDLCKRNKIDLIESDN------TINKLSKKD 75

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                A +   +++    + +++V  +  D  N+G I+R+ + F  + +   +       
Sbjct: 76  NCFAIAIIKKYSMELKNTNHVVLV--NPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFD 133

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +++ GA+ +I +       D L K  +     + L       L +   +   +L+ 
Sbjct: 134 PKVVRASMGAIFNINFEYFDTFDDYLHKYPNRDIYPLMLKGAKNIHLIEPD-DKNYSLVF 192

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  GL  +          +     I +LN+S A  + LY       K
Sbjct: 193 GNESSGLPDEFLNYG-QSIFIPHSDKIDSLNLSMALGITLYHFSKDIFK 240


>gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis]
          Length = 740

 Score = 72.2 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 5/216 (2%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           K            +   +   P+   ++      +                +    +  L
Sbjct: 521 KKIICKEMSGYYVQEKEEKEEPNAIEIQRSHNYQLKFEPPHYDSLISGEPRSRRSDNQLL 580

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE- 185
           +      L+++   V+   NI  I R+   F  + ++ + +   ++      S +     
Sbjct: 581 NRSG---LIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKKVMNDPIFRQISVTAEKWL 637

Query: 186 -HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                          +K            + S   +++    +K  LILG E +G+  + 
Sbjct: 638 PINELEPTKIKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEI 697

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    +   GII++LNV  +A++ +Y     F
Sbjct: 698 VSIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQF 733


>gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
 gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
          Length = 154

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       +  +            L ++     E+   +R 
Sbjct: 1   MFAVVLYRPEIPPNTGNIIRMCANTGAELHLVEPLGFDLSDKHLRRAGLDYHEYARIVRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
           ++       +       +     +               + G E  GL P+ +   +   
Sbjct: 61  ADWAACKAALAGRRLFAMTTKGTASPFS--TALEANDVFVFGCETSGLPPEIRAEFSPER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNAAAV ++     
Sbjct: 119 CLRLPMLPGQRSLNLSNAAAVTVFEAWRQ 147


>gi|332637245|ref|ZP_08416108.1| tRNA/rRNA methyltransferase (SpoU) [Weissella cibaria KACC 11862]
          Length = 204

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             + H        L D         +            + +    +K   + G E  GL 
Sbjct: 98  EHISHHKITDYQKLFDQWHAEGYTIYAVDNTPGYELHNVFETALPEKSVFLFGEEQIGLA 157

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277
            +  + A +M ++   G +++LNVS A  +   LY  Q
Sbjct: 158 DELIQAADAMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195


>gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 219

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 5/174 (2%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               V           +   LD  R     + +++     NIG+I+RSA AF+ D +   
Sbjct: 46  DTRNVIDRYRYWRMDAIVADLDQHR-HPFHVAIENWQHDMNIGSIVRSANAFAADTVHIV 104

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   ++   +       + H   I         + +       +  S   +        
Sbjct: 105 GRRRWNKRGAMVTDRYQHVVHHATIDDLVEWARGEGLPIIAIDNVDGSVLLET----TRL 160

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++  L+ G EG GL  +    A     +   G  +++N S AAAV ++     
Sbjct: 161 PERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQ 214


>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 236

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 17/232 (7%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +      ++L T+  L +    +       +  V  + +   +       G+A     
Sbjct: 2   LKSGKNP-SKILVTEKWLRKNQNLSKKFDESLINIVSEEVLASAISTI-NPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170
              P     R    ++VLD + DP N+G + R+A+A   + I       P          
Sbjct: 60  SAIPNYQFNRKDDFVLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGGAHPLGQKVLRASS 119

Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                   L             +   +    +             +    KP  +   + 
Sbjct: 120 GAVFHLPFLRFDGIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWSR 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
           + ALILG EGKG+  K QE       +    I+++LNV+  A  + L   + 
Sbjct: 180 RTALILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVACVAVPLLL-ERKR 230


>gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis
           L2TR]
          Length = 154

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G ++R A        +        +   + ++      H      
Sbjct: 1   MLHLVLFEPEIPPNTGNVIRLAANTGMSLHLIEPLGFELDEKKVRRAGLDY--HDLASVN 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
            +         +   +    ++  K             L+ G E +GL  +  ET     
Sbjct: 59  IHKDWQSFLNSTSFNRIFACTTKGKTNYSAVAYEAGDVLLFGPETRGLPMEVLETFPQEN 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ A+  Y     
Sbjct: 119 WLRLPMADTSRSLNLSNSVAIFAYEAWRQ 147


>gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 176

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +  +  ALI G E  G+  +  +       +   G   + NV  +A + L+    
Sbjct: 108 HRFTPVLGESYALIFGNEVNGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYR 167

Query: 279 HFA 281
              
Sbjct: 168 KLK 170


>gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
 gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
          Length = 152

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 2/126 (1%)

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               +  +   R    + +      +G         + + +           +   + + 
Sbjct: 22  CVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEKVDLVIHDSLEEFMEFVKDKRYFLIETP 81

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIK-ALNVSNAAAVAL 273
           S K        D   LI G E +G+     +     +  + M   I  +LN++N+ ++ L
Sbjct: 82  SDKKYTDVSFKDGDYLIFGREKEGIDESLLKANKDKILTIPMTKKIDRSLNLANSVSIVL 141

Query: 274 YITQNH 279
           Y     
Sbjct: 142 YEALRQ 147


>gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 231

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 5/220 (2%)

Query: 59  AALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
            A            LL        L      P   PV       +D +VG       LAL
Sbjct: 4   EAHAAGRGFFAEKILLLRNRVEGVLPILERFPADVPVYVAGADVLDGVVGFHLHRGVLAL 63

Query: 117 ETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                   +  LDA+    L++V   +++  N G++ R+A AF  D ++  +        
Sbjct: 64  GRRQDRGEAALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYR 123

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              + + G++  +P+ R     D L  +   GF    LS   +  +     + ++AL++G
Sbjct: 124 KALRVSVGSVLSVPHRRGGKALDVLVALAERGFAIWTLSPHGRTDIRAIPASMRMALVVG 183

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG+GL           A +     + +LN + A  +AL+
Sbjct: 184 TEGEGLPDALLARF-QSARIPQSEELDSLNAATATGIALF 222


>gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 180

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 10/158 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL H   P+N G+ +R          +        +   L ++     E+     
Sbjct: 1   MTIHIVLVHPKIPNNTGSAIRLCANTGAQLHLVEPLGFDLDDKKLRRAGLDYHEYAAMQV 60

Query: 192 ISNLTDALQKMHSWGFQTI--------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             N   A + + + G   +            +         +++ IAL+ G+E  GL   
Sbjct: 61  HKNWQVAKEALQAAGCHKMVALTTKLSHPFYEYDFGDSNAAEHESIALVFGSETAGLADD 120

Query: 244 TQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +     ++   L M    ++LN++N+ ++ LY     
Sbjct: 121 IRADIGESNWLRLPMLPDSRSLNLANSISICLYEVWRQ 158


>gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 221

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 11/211 (5%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
               F+YG H    AL       K+      K                 V++VP   +D+
Sbjct: 9   ANTDFIYGHHASVEALKAGQTINKVLLQSGLKGKHINEILQLAKKKQLVVQSVPKSKLDE 68

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  +   HQG+AL  A     TLD           +   ++LD + DPHN+G+ILR+A A
Sbjct: 69  IS-EGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPHNLGSILRTADA 127

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   +A +AK ++GA+EH+P +R++NL + +  +   G      +  +
Sbjct: 128 AGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKERGLWI-FGTDMA 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +           AL++G EGKG+ P  ++ 
Sbjct: 187 GEDYRHLDATGPTALVIGNEGKGISPLLKKK 217


>gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 83

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+++A +  + 
Sbjct: 29  DRLAVILGSEGPGLLPQTIAESDYTIKIPMAERVDSLNVAAASSLAFWEVKK 80


>gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium
           sibiricum 255-15]
          Length = 157

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +V+     P N G I R+  A      +       ++   L ++     E +    
Sbjct: 1   MAIHVVMYQPEIPQNTGNISRTCAATHSVLHLIRPLGFSTDDKQLKRAGLDYWEFVDVRY 60

Query: 192 ISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
             +L +   +      +            ++     +    + G E KGL      E   
Sbjct: 61  HDSLEELWDKHPDGTFYYITKYGEKYPSQVDLSNVEEDYFFVFGRETKGLPLNVIDENLE 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L    ++++LNVSN AA+ +Y     
Sbjct: 121 RCIRLPQSNLVRSLNVSNTAAIIVYEALRQ 150


>gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 150

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 D   ++ G E  G+  +    A +   + M    +++N+S + A+         
Sbjct: 90  WDFEFRDDDIVMFGRETAGVPVEVHAAADARLTIPMQTGARSMNLSASVALVCGEAVRQL 149


>gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 266

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 73/241 (30%), Gaps = 16/241 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRK-------IFQLLATKNALARLDWDANLPHPFPVK 94
           H      + L G H +  AL   +R            LA    LA    +        V 
Sbjct: 29  HREAGGAVLLDGFHALKHALRFGARVPVALATDRAAALALAEELAPDVREGLAALLTEVP 88

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
               + +        V               L        ++VLD+  +  N GA++R A
Sbjct: 89  ESSYRALLARPHPTGVAALAGRPAREANLRALAHAPRRAPVVVLDNPRNLGNAGAVIRLA 148

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F   G++TT    P    V+   A                             +    
Sbjct: 149 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVERMDVADLPEGP---------VYALD 199

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + + +    D+  L  G+E  GL P+ +  A  +  L M   + + N++ +  +AL+
Sbjct: 200 PEGEDIRRVRLPDEALLAFGSERSGLSPELRARADRLVALPMRPQVSSYNLATSVGMALF 259

Query: 275 I 275
            
Sbjct: 260 H 260


>gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
 gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
          Length = 147

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N  AI+R+         I            L +     L        
Sbjct: 1   MLNIALYQPDIPQNTAAIIRTCACLGLKLEIIKPAGFVLNEKKLDRIYMDYL--KDCEIF 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            + +           + I  ++ +     + I      L+ G+E KG+  +   T  +  
Sbjct: 59  YHESFDTFVKSKKQKRIILFTTKTTNNYTKFIFKKNDTLLFGSESKGVSEEVHGTIKNKL 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ +    ++LN++ + A+A       F
Sbjct: 119 NIPIKNNTRSLNLATSVAIASSEALRQF 146


>gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
 gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
          Length = 160

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L +VL     P N G I R+ V  +    +        +   L ++      H+
Sbjct: 1   MLDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                 +  D ++K        +  + + K   ++        ++ G E  GL    + +
Sbjct: 61  DVEIHESFDDMIKKY-PNANIYLSTTKEPKYHHDEVNYKKGDFIVFGRESSGLPDYIRDK 119

Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280
              +   + M     ++LN+SN  ++  Y      
Sbjct: 120 YVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQL 154


>gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 151

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +     + +   + +  SS   K        D + LI G E KGL  + 
Sbjct: 52  YWQHISLTIYDSIEDFYLKNSDKEFVYFSSHGDKTHWDIDFKDNLFLIFGKESKGLPEEI 111

Query: 245 -QETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
             + + S+  + +    +++LN++NA ++ +Y      +
Sbjct: 112 TAQNSNSLYKIPLHSDHVRSLNLANAVSIVVYEGLRQLS 150


>gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica]
          Length = 1335

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 9/220 (4%)

Query: 62   NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             N +   F+ L+ +  + R            +     + +D +   E  +  +  +  P 
Sbjct: 1119 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKIS----RDLDDLSLDEPTN--VQQKITPW 1172

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +  +L   ++ + L++   + D  N    +           +     S  +S      A 
Sbjct: 1173 IQDSLIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTSLAV 1232

Query: 182  GALEHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             A++ I       I+     L              + +   +E+     K  ++LG E +
Sbjct: 1233 TAMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNERE 1292

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G+          +  +   GII++LNV  +AA++++    
Sbjct: 1293 GIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 1332


>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 256

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           K  ++AL+ G+E KGL  +  +    +  +     + +LN++ A  V LY     
Sbjct: 107 KGKRVALVFGSEDKGLENEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQ 161


>gi|255030658|ref|ZP_05302609.1| hypothetical protein LmonL_18963 [Listeria monocytogenes LO28]
          Length = 126

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALN 264
            +            ++    N     + G E  GL      E   +   + M   I++LN
Sbjct: 33  FYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLN 92

Query: 265 VSNAAAVALYITQNHFA 281
           +SN AA+  Y       
Sbjct: 93  LSNTAAILAYEALRQQN 109


>gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 168

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD +   HN+G I R A A + + + T    +      L K+A G  E +      
Sbjct: 19  VIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEFVNCEHFD 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +  +A+  +   G++   + +      + +   + K A + G E  G++ +T E      
Sbjct: 79  HSLEAVGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQETLEACDEYI 138

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            L+  G   ++NVSN AAV L+       K
Sbjct: 139 RLNAHGRKNSINVSNCAAVVLFQASYKLRK 168


>gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL2A]
 gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL2A]
          Length = 166

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 10/154 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R+ +AF+    I        E   L ++      H+      + 
Sbjct: 11  VALFEPRIPQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESF 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   +     +   S++       I  D   L+ G E  GL          +A + 
Sbjct: 71  EQYKNSFKNSRIIALTKKSNNLISN--IIYKDTDILLFGREDTGLPESIINKCEIVAGIP 128

Query: 256 MP--------GIIKALNVSNAAAVALYITQNHFA 281
           MP        G +++LN+S A+ +  Y       
Sbjct: 129 MPGGENQLKTGGVRSLNLSVASGIVCYSACLQLN 162


>gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
 gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
          Length = 148

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           M+L     P N G ++R          +        +   L ++     E+       NL
Sbjct: 1   MLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRRLKRAGLDYHEYARMQVHPNL 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + AL  +       +      +        +   A I G E +GL      T   +   +
Sbjct: 61  SSALAAIAPRRLFALSTRGQMRYDTPT--FSTGDAFIFGPETRGLPDTVLHTIPESQRLY 118

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 119 LPMQPQSRSLNLSNAVAVMVFEAWRQ 144


>gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50]
 gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50]
          Length = 172

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G  +R          +        + A L ++     E  P    
Sbjct: 17  MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 76

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L  AL    +   +   L++ +   L           + G E  GL            
Sbjct: 77  DTLPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 136

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 137 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165


>gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822]
 gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis]
          Length = 172

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G  +R          +        + A L ++     E  P    
Sbjct: 17  MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 76

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L  AL    +   +   L++ +   L           + G E  GL            
Sbjct: 77  DTLPQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQ 136

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 137 QLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165


>gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 164

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KI+L++GAE  G+ P+  E    +AH+ M GI  ++NV+ AA +ALY    
Sbjct: 114 KISLVIGAESTGVTPEALEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164


>gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 158

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFADIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T           +   L++       +        L+ G E +G+      +  A  
Sbjct: 59  KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIPMDILNSMPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
 gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
          Length = 197

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 3/157 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T    + + L +VLD+V   HN+GAI R+A AF  + ++            + K+A GA 
Sbjct: 38  TFKQTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGAT 97

Query: 185 EHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           E + +I +  ++   + L+K +         S+  K       K+ K A++LG E  GL 
Sbjct: 98  ESVEWIYVDTVSAALETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNEVDGLS 157

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   +   +   G   +LNVS    + ++    
Sbjct: 158 EDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWEFFK 194


>gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 155

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 155

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +V D+   P N G  +R+A        +        +   L ++      H     
Sbjct: 1   MPLHIVFDNPVIPTNTGNAIRTAAVTGAKLHLVEPLGFNFDDKHLKRAGLDY--HDLADL 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +           G +    ++++          D   L+ G E  GL  +       T
Sbjct: 59  KIHPDFDACMDALPGARVFAFTTNATDWFTDVEYTDGDVLLFGTEPTGLPAEHLAHPRIT 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M    +++N+SNAA+ A+Y      
Sbjct: 119 QEVRIPMVPARRSMNLSNAASTAVYEAWRQL 149


>gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus]
          Length = 1500

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    +K  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1433 QYRFPEKSLLLLGNEREGIPVNLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1490


>gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
 gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
          Length = 155

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P N G + R   A      +        +   L ++     + + + + +N 
Sbjct: 3   IVMVEPEIPPNTGNVARLCAATKTRLHLIEPLGFKLDDKQLKRAGMDYWQQVEWRQWANW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
               +++ +        S   +   E +   +   L+ G E  GL  +   E       L
Sbjct: 63  KTFCEQLPADARLWFVESDGPRLYTEVQYLPE-DYLVFGRETAGLPKQLLKENPERWLRL 121

Query: 255 HMPG-IIKALNVSNAAAVALYITQNH 279
            M     ++LN+SN AA+ L+     
Sbjct: 122 PMFNAESRSLNLSNCAAIVLFEALRQ 147


>gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 235

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K+ K+A I G E  GL  +    +  +  +        LN+S+A  + LY    + 
Sbjct: 102 KDKKVAFIFGRESVGLTREEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRNR 157


>gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
 gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
          Length = 147

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q     K+ L+LG E  GL     +       +   G +++LNVS A  + L      
Sbjct: 87  QAKLPSKMVLVLGQERDGLSDSAWQQGDMSVSIGGTGKVESLNVSVATGILLADWWRQ 144


>gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 155

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +   L+ G E  GL    ++    T+   L M   +++LN++NAA++A++   
Sbjct: 86  YTDISYREGDVLMFGPESVGLPDWLKQDPHVTARVRLPMKPSLRSLNLANAASIAVFEAW 145

Query: 278 NH 279
             
Sbjct: 146 RQ 147


>gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
 gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
          Length = 155

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V       +        +   L ++     +++    
Sbjct: 1   MSLNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTL 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
                +  ++  +  F         K   +     D+  ++ G E  GL  K ++     
Sbjct: 61  YDCYEELRERYKNGTFYFSTTHG--KNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEK 118

Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHF 280
              L M     ++LN+SNA A+ +Y      
Sbjct: 119 NIRLPMIKTTTRSLNLSNAVAIVVYEALRQL 149


>gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 281

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 89/284 (31%), Gaps = 29/284 (10%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           KLR       ++Q   +  +    S+     + G   V   L   S     L  T+ A+ 
Sbjct: 2   KLRTKEATRSQLQRAQRLHRREQRSRHGQTLVEGPQAVRELLACASGLARDLYVTEEAIE 61

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           R    A L     V T      D           +A+ + P        +  + L++   
Sbjct: 62  RHGDVAELASAAGVWTHVLAAQDMRDLSADAQGVVAVISTPEAPGLNSLLGEASLVVATL 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--------- 190
            + DP N+G I+R+A A   D +   K  +   S  + +SA+G+  H+P +         
Sbjct: 122 DIADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVMRSAAGSHFHVPCVAGVEASELA 181

Query: 191 --------RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                   ++       +       +    +              +    +G E +G   
Sbjct: 182 ARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAPSGPDLRRRTLWFVGNEARG--- 238

Query: 243 KTQETATS----MAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281
                          + + G  ++LNVS A AV  Y       A
Sbjct: 239 --FAGCDFDVDARVAVPLYGKAESLNVSTALAVCAYASAMAQRA 280


>gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
 gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 173

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 5/161 (3%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              T+  +    L +V D+   P N G  +R          +                  
Sbjct: 10  PRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTGAHLHLVEP---LGFDLTEKHLRR 66

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             L++     ++   +      +   +    ++ +             AL+ G E  GL 
Sbjct: 67  AGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATGWFTDITYQPGDALLFGTEPTGLP 126

Query: 242 PK--TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +       T+   + M    +++N+SN+AAVA Y      
Sbjct: 127 HEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQL 167


>gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 155

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
 gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
          Length = 167

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R          +        +   L ++     E       
Sbjct: 1   MPHIVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHH 60

Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +          +        G +   L++  K         +   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYREDDYLMFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN+ AV ++ T    
Sbjct: 121 LDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQL 158


>gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 161

 Score = 71.8 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR A        I            L ++    +      R  + 
Sbjct: 14  IALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSW 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +   S G + +  S+ +  P           L+ G E  G+     + A     + 
Sbjct: 74  DRFEEWRASTGRRLVLASTRAALPYTDITYRADDILLFGRESAGVPDHVHDKADERIIIP 133

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    +++NV+ +AA+        
Sbjct: 134 MVAGQRSINVAMSAAMVTGEALRQ 157


>gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 159

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKLRRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  ++            L+ G E +G+          + 
Sbjct: 59  KYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPESRGIPKPLLAEMPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y     F
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQF 148


>gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +   L+ G E  GL          T    + M    +++N+SNAAAVA Y      
Sbjct: 91  YREDDVLLFGPEPTGLPADVLAHPRVTDQLRIPMLPGRRSMNLSNAAAVATYEAWRQL 148


>gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           REY15A]
 gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           HVE10/4]
          Length = 237

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            K+AL+ G E  GL  +       + ++        LN+S+A  + LY    + 
Sbjct: 102 KKVALVFGRESVGLTREEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155


>gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 159

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLFEPEIPQNSGNIIRLCANCGFRLHMIEPFGFTWDDKKLKRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +    Q        L+ G E +G+     ET   + 
Sbjct: 59  KYTHFDDFLARAKPKRLFALTTKGEANHSQVQYEQGNFLMFGPESRGIPTAILETLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN  AV +Y     F
Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148


>gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL  +       T    + M    +++N+SNAAAV +Y     
Sbjct: 91  YRPGDVLLFGTEPTGLPAEVLADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQ 147


>gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
 gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
          Length = 264

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 12/235 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105
             L G   V   L    R I  +L  +                     + V    +D++ 
Sbjct: 24  ELLPGRKPVRELLAERPRGIDDVLLRQGLRGPDIDAIVAACREARVRFRFVAAADLDRLC 83

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                HQG+    A     +LD V          + + LD V DP N+G + R+  A   
Sbjct: 84  --PGNHQGVVARLAAGELTSLDDVLAATRAAPLPVAVALDRVQDPGNVGTLARTLFALGG 141

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKK 218
            GI+  +          AK+++G L  +P  +++NL  A    + +              
Sbjct: 142 GGILLPRHEGARLGPGAAKASAGTLARLPVAKVTNLAQALDAAIEAGFSIVGAAGEPEAD 201

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +   +  + L+LG E +G+R   ++    +  +     I +LNV+ A A+ L
Sbjct: 202 NALEATADFPLILVLGNEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256


>gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   + ++      H      
Sbjct: 1   MLDIVLYEPEIPPNTGNIIRLCANSGFALHLIEPLGFEWDDKKVRRAGLDY--HEFANVQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETA-TS 250
            +         +   +    ++       +        LI G E +GL            
Sbjct: 59  RHANLDAYLASAKPQRIFACTTKGSMFHSKASYAPGDCLIFGPETRGLPHDFILSLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N+SN+ AV +Y     
Sbjct: 119 RVRIPMLSDSRSMNLSNSVAVFIYEAWRQ 147


>gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R]
 gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
 gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 157

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 5/154 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L ++ D+   P N G  +R          +                    L++  
Sbjct: 1   MPEHPLHVIFDNPVIPPNTGNAIRMCAGTGAHLHLVEP---LGFELTEKHLRRAGLDYHD 57

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              ++      + M +   +    ++ +             AL+ G E  GL  +  E +
Sbjct: 58  LADVTVHATFDEAMAAVPGRVFAFTTTANTRFTDIAFEPGDALLFGTEPTGLPQEHVEHS 117

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             TS   + M    +++N+SN+AAVA Y      
Sbjct: 118 RITSELRIPMLPGRRSMNLSNSAAVATYEAWRQL 151


>gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL  + +     TS   L M   +++LN++NAA++A++     
Sbjct: 91  YLPGDVLLFGPESVGLPAELKNDPHVTSRVRLPMLPSLRSLNLANAASIAVFEAWRQ 147


>gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
 gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
          Length = 175

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                + + L+++LD++   +NIGA+ R++ AF  + I      +   +  + K+A GA 
Sbjct: 16  EFKEQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           E + +    +    ++ +     + + +              DK    A++LG E KG++
Sbjct: 76  ESVTWEYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYAIVLGNEVKGVQ 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + A     +   G   +LN+S  A V ++       
Sbjct: 136 QEVVDAADVCIEIPQLGTKHSLNISVTAGVVIWDLFQKLT 175


>gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 236

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 2/175 (1%)

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E V      +     + +      S   +VL     P N G I R+  A +    +   
Sbjct: 44  MENVRCKNTNQCENRSAISDRKEFLSMNHIVLFEPQIPANTGNIARTCAATNTHLHLIEP 103

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               ++   L ++       +      +L   +  +       I   ++          +
Sbjct: 104 LGFSTDDKQLKRAGLDYWHDVNITYHKDLATFMDFLGERPLYLISKFANRVYSDVDYTAD 163

Query: 227 DKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           D    I G E  GL     +E A     + M    +++LN+SN AA+ +Y     
Sbjct: 164 DDQFFIFGKETTGLPESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQ 218


>gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N+GA +R    F     +      P     L ++A          R  + 
Sbjct: 3   IALFQPGIPQNVGACIRLTACFGLGLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+       + +  ++    P  +        L+ G E +G   +    A     + 
Sbjct: 63  ETFLKAPERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    +++N++  AA+AL      
Sbjct: 123 IRPEARSMNLATTAAMALGEALRQ 146


>gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 160

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N+GA +R    F     +      P     L ++A          R  + 
Sbjct: 9   IALFQPGIPQNVGACIRLTACFGLGLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHDSW 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+       + +  ++    P  +        L+ G E +G   +    A     + 
Sbjct: 69  ETFLKAPERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIP 128

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    +++N++  AA+AL      
Sbjct: 129 IRPEARSMNLATTAAMALGEALRQ 152


>gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
 gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
          Length = 237

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            K+AL+ G E  GL  +       + ++        LN+S+A  + LY    + 
Sbjct: 102 KKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155


>gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T    + M    ++LN+SNAAAVA+Y     
Sbjct: 91  YEPGDVLMFGPEPTGLDEATLADPHITGQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 147


>gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti]
 gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti]
          Length = 451

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +Q     +  L+LG E +GL          +A +   G++++LNV    A+ ++     
Sbjct: 387 QQIEFPKRSILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQ 445


>gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
 gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
          Length = 167

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N  + + L     P N G I R  V  +    I +K      +  + ++     E + 
Sbjct: 9   NENFNVSIALYRPEIPSNTGNIGRLCVGLNISLHIVSKPSFILSAKEIRRAGLDYWEKLN 68

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
            I+  N    L+       + + +S       ++   +D   L+ G E  GLR    E  
Sbjct: 69  LIKHENEHTFLEYCKENNKRIVPISKFGHIRYDEFNYSDNDILLFGRESTGLRESIWEND 128

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +  +L M   I+++NVSN AA+  Y      
Sbjct: 129 AANSVYLPMSDDIRSINVSNTAAIVSYEAFRQL 161


>gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 154

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + G+E +GL               L M    ++LN+SNA AV ++     
Sbjct: 91  FAAGDVFVFGSETRGLPAAVLAEFADDWRLRLPMLPGQRSLNLSNAVAVTVFEAWRQ 147


>gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2069

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  ++LG E  G+     +       +   G++++LNV  +AA+ ++     
Sbjct: 2003 NFSFPQKSLILLGRERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQ 2060


>gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda
            melanoleuca]
          Length = 1548

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    ++  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1481 QYSFPERSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1538


>gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca]
          Length = 1374

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q    ++  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 1308 QYSFPERSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1365


>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
 gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
 gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
          Length = 644

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 116/324 (35%), Gaps = 66/324 (20%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
             +++     R  HRD       +    +T+       YG   V AAL +  RK+++L  
Sbjct: 296 ERRETDRTPRRELHRDLDTETPKSLSIPYTTAASQFL-YGTSVVEAALQSARRKLYKLYI 354

Query: 74  TKNA-LARLDWDANLPH-----PFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPT 125
              A   +L  DA +             V  + +  +  +     H G  LE +PL  P 
Sbjct: 355 YAGANREKLAKDAAIQKLAQRNKVETVFVNEEGLKMMDKMSGSRPHNGYILEASPLPQPP 414

Query: 126 L-----------------------------------------DAVRNSQLLMVLDHVNDP 144
           +                                          +  +  L++V+D + DP
Sbjct: 415 VISLGEVVDAESGQGTTGYKVVLGHQSHEEALINGKSDFVAASSATHKPLVVVVDQILDP 474

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILRS        +  TKR S S + V  K+++GA E +    I +L   LQ    
Sbjct: 475 GNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGASESLTLFSIDHLPKFLQDSRE 534

Query: 205 WGFQTI------------GLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251
            G+                   D  +  E +       ++ LG+EG+GL  + +  A   
Sbjct: 535 NGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKNPCILLLGSEGEGLPGQIKSKADYE 594

Query: 252 AHLH-MPGI--IKALNVSNAAAVA 272
            ++  M G   I +LNVS AA + 
Sbjct: 595 VNIPNMSGGTVIDSLNVSVAAGLL 618


>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 243

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +  +  +  V    +             N   +     +    F          DK+   
Sbjct: 28  SFIVESIKIV----DQIPEDFECEFIFVNEDMK-----DYKTDFKKIVFSNNLFDKLSLL 78

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           E          + +L        +S+ +++LDH+ DP N+G I+RSA AFS   II    
Sbjct: 79  ENP-----EGVSAVLKMKDKKEISSKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNN 133

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +    +++ G++  + +I +            +    + L+    K ++     D
Sbjct: 134 CVDLYNEKTIRASMGSIFRLNFIDLELEDVKDLINKDYK---LILADMDGKSVDYFKSCD 190

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           KI L +G E  G+    ++ +     + M G I++LN + AA++ +
Sbjct: 191 KIILAIGNEANGISKSLKDLSDDFVSIKMDGEIESLNAAIAASILM 236


>gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980]
 gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 600

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGII 260
              +            L+  ++ D   L++G EG+GLR   ++ A     +    M G +
Sbjct: 496 RHMWPAASQEFVWSHKLQDPLREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKL 555

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LNVS A  +         A+
Sbjct: 556 DSLNVSVATGMLCGAFIRQTAR 577


>gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
 gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 156

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275
                   D   ++ G E  GL     ++       + M      ++LN+SN+ A+ LY 
Sbjct: 86  YYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALRQL 150


>gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
 gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
          Length = 179

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 2/165 (1%)

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    +
Sbjct: 13  GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI--LDF 70

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +      +S  L +     +   T  L             +S       + +   K
Sbjct: 71  AKELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSLKK 130

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 131 CALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175


>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
 gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    +        +   L ++     +++    
Sbjct: 1   MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249
             +  +  +K     F                  +D   ++ G E  GL  + ++ +   
Sbjct: 61  YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPS 117

Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279
               + M     ++LN+SN  A+  Y     
Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 148


>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 159

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 6/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V  +C   +        +   L ++     +++     
Sbjct: 6   NLNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVY 65

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
            +  +  +K     F              +    +   ++ G E  GL    +E +    
Sbjct: 66  ESYEELREKYKDSTFYFSTTHG--DNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPKR 122

Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNH 279
              + M     ++LN+SN  A+  Y     
Sbjct: 123 CIRVPMINTTTRSLNLSNTVAIVAYEALRQ 152


>gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 156

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            SQL +V D+   P N G  +R+A        +        +   L ++      H    
Sbjct: 1   MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
              +           G +    ++ + K        +   L+ G E  GL P+       
Sbjct: 59  LQIHKDFDACMAALPGARVFAFTTHTDKWFTDVEFQEGDVLLFGTEPTGLPPEHVNHPRI 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T    + M    +++N+SNAA+ A+Y      
Sbjct: 119 TEQVRIPMVPARRSMNLSNAASTAVYEAWRQL 150


>gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
 gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 152

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P N G I+R          +        +   L ++            I
Sbjct: 1   MFHIALFEPEIPPNTGNIIRLCANAGASLYLIHPLGFSLDEKRLQRAGLDY--REWATII 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                   K      +    ++  K              + G E +GL  + +     + 
Sbjct: 59  HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N++N  ++ LY     
Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
          Length = 1145

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + LI G+E  G+ P   + +T+   +   G+I +LNVS +AA+ L     
Sbjct: 432 TKPLLLIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIILAECWR 484


>gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L     P N G I+R          +        E   L ++      H      
Sbjct: 1   MINIALYEPEIPPNTGNIIRLCANVGAKLHLIEPLGFKLEDKQLRRAGLDY--HEFADLK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
                      +   +    ++ +K+   Q   N    L+ G E +GL     +      
Sbjct: 59  IYKNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVLKLLEKTQ 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ AV LY   N+ 
Sbjct: 119 LKIPMHKNSRSLNLSNSVAVILYGALNNI 147


>gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 169

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 1/95 (1%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   + I+   +    +          SS + +            L+ G E  GL  +  
Sbjct: 51  YWHLLNITYYENLADFLRRAPGPCFFFSSKAPRSYTDVHYPPDACLVFGKETAGLPEELL 110

Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                S   L +    + LN+SNA AV  Y     
Sbjct: 111 LAHEDSAVRLPIRAEARCLNLSNAVAVGAYEALRQ 145


>gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPVELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 152

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P N G I+R          +        +   L ++            I
Sbjct: 1   MFHIALFEPEIPPNTGNIIRLCANAGASLHLIHPLGFSLDGKRLQRAGLDY--REWATII 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                   K      +    ++  K              + G E +GL  + +     + 
Sbjct: 59  HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N++N  ++ LY     
Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas
           albilineans GPE PC73]
 gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein
           [Xanthomonas albilineans]
          Length = 159

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 232 ILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + G E +GL P+  E         L M    ++LN+SNA AV ++      
Sbjct: 103 LFGPETRGLPPEVLEAIPPAQRLRLPMRPDNRSLNLSNAVAVVVFEAWRQL 153


>gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735]
 gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735]
          Length = 179

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+I+G E KG++ +  + +     +   G   +LNVS  A + ++    
Sbjct: 127 AVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVR 175


>gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 249

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 73/238 (30%), Gaps = 10/238 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVP 97
           H     ++ L G H +  A+   +R    +   + A   L      D        +  VP
Sbjct: 9   HRLADGSVLLDGFHALKHAVRFQARVPVAVTTDRRAALALADELAPDVRETLDALLAEVP 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +T+  +V +       AL   P  +  L+A+  +     +  +++P N+G         
Sbjct: 69  EETLKALVPRPHPTAVAALAVRPSRAANLEALARTPRSAPVVVLDNPRNLGNAGAVIRLA 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G          +         GA  H               +       +       
Sbjct: 129 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTVDELPPGPVFALDPEG 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +      D   L  G+E  GL  + +     +  L M   + + N++ + A+ L+ 
Sbjct: 183 DDIRGLKLPDDAVLAFGSERTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLFH 240


>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
 gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +C   +        +   L ++     +++    
Sbjct: 1   MNLNIVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249
             +  +  +K     F              +    +   ++ G E  GL    +E +   
Sbjct: 61  YESYEELREKYKDSTFYFSTTHG--DNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPK 117

Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279
               + M     ++LN+SN  A+  Y     
Sbjct: 118 RCIRVPMINTTTRSLNLSNTVAIVAYEALRQ 148


>gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
 gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
          Length = 237

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            K+AL+ G E  GL  +       + ++        LN+S+A  + LY    + 
Sbjct: 102 KKVALVFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155


>gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15]
 gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15]
          Length = 245

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +AL++G E  GL          +  +       ALNVSNA AV LY       K
Sbjct: 108 VALVVGRESVGLTRDELAQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRK 161


>gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 156

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +V D+   P N G  +R+A        +        E   L ++      H       
Sbjct: 4   LHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDY--HDLADLKI 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQETATSM 251
           +             +    ++ ++K        +   L+ G E  GL  +       T  
Sbjct: 62  HKDFDACMEALPDARVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHPRVTER 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    +++N+SNAA+ A+Y      
Sbjct: 122 VRIPMMPARRSMNLSNAASTAVYEAWRQL 150


>gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera]
          Length = 205

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAA 270
                        LI G+E  GL P+      S         + M    ++ LN+S +  
Sbjct: 110 NIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIQIPMVETYVRCLNLSVSVG 169

Query: 271 VALYITQNHFA 281
           +ALY       
Sbjct: 170 IALYEASRQLN 180


>gi|332671651|ref|YP_004454659.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340689|gb|AEE47272.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 173

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 2/147 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                QL++         N+G +LR+  A      +   R      A+   +       +
Sbjct: 23  HSCWDQLVVAPLWPLHGVNLGTLLRTCDAVGA--CLAVPRLPWVPEALERGNTLRHPACV 80

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +          Q+        + L+ +S +  +      +  ++LG E  G+ P+  + 
Sbjct: 81  HWTGNRVRWLERQRDRGSTVVGVELAEESVRLGDLPAARRRTVVVLGHEQTGIPPEALDL 140

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + M G   +LNV+ A ++ LY
Sbjct: 141 LDVTVEIPMVGTGASLNVAVAGSLVLY 167


>gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 245

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +   +  +   +AL+ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGEHSAKAAQTAPVALVFGRERVGLTNEELQKCNYHVCIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQIIAYEVR 157


>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
 gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
          Length = 176

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA 
Sbjct: 17  EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
             + +  ++N  +A+  + + G+    +       +  E    K+ K  +++G E KG++
Sbjct: 77  FTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIVMGNEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + +     +   G   +LNVS  A + ++   N   
Sbjct: 137 QEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKLK 176


>gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016]
 gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 157

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+ V       +        +   L ++     +++      
Sbjct: 5   LNIVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
              +  ++  +  F         K   +     D+  ++ G E  GL  K ++       
Sbjct: 65  CYEELRERYKNGTFYFSTTHG--KNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEKNI 122

Query: 253 HLHMPGII-KALNVSNAAAVALYITQNHF 280
            L M     ++LN+SNA A+ +Y      
Sbjct: 123 RLPMIKTTTRSLNLSNAVAIVVYEALRQL 151


>gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 200

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E       TL  +    +++VLD++   +N+G+I R++ A   + +  T      E   
Sbjct: 7   HEIPRPDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQ 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALIL 233
           L K+A GA E +P+  + +    +  +   G+    L          ++ +D   +ALI+
Sbjct: 67  LHKTALGAEETVPWEYVRDPVPLVASLRKAGYTIAALELTDTPTYTHQLPDDIFPLALIV 126

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  G++P   E A     +   G  ++LNV+ A  +A++    H+ +
Sbjct: 127 GHELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRR 175


>gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 153

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E+       NL
Sbjct: 6   VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + AL  +       +      +            A I G E +GL      T   +   +
Sbjct: 66  SSALAAIAPRRLFALSTRGQVRYDTPT--FRTGDAFIFGPETRGLPDTVLHTIPESQRLY 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMQPQSRSLNLSNAVAVMVFEAWRQ 149


>gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
 gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
          Length = 155

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E+       NL
Sbjct: 8   VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + AL  +       +      +            A I G E +GL      T   +   +
Sbjct: 68  SSALAAIAPRRLFALSTRGQVRYDTPT--FRTGDAFIFGPETRGLPDTVLHTIPESQRLY 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 126 LPMQPQSRSLNLSNAVAVMVFEAWRQ 151


>gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior]
          Length = 828

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 4/197 (2%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           L +   +       I K +         G   E         D      L++V   V+  
Sbjct: 628 LENNVEIYMEGLNDIQKKIDPSKPIGLCGDTFEVINEFMFLQDTQLQQGLIVVASFVDRS 687

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKM 202
            N+G I R+   F    ++        +      S S                     + 
Sbjct: 688 PNLGGIARTCEIFGVKALVVANADCVKDKEFQYLSVSADKWLNILQVKPYELQKFLLDRK 747

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           ++         + +   L       +  L+LG E  G+             +   G+ ++
Sbjct: 748 NTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPANFIPLFDKCVEIPQVGVTRS 807

Query: 263 LNVSNAAAVALYITQNH 279
           LNV   AA+ ++   N 
Sbjct: 808 LNVHVTAAICIWQYANQ 824


>gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 241

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +AL+ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGIRSAQEAEHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQIIAYEVR 157


>gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
 gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
          Length = 156

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN G I+R+         +            L +                 
Sbjct: 5   IVLVEPEIPHNTGNIIRTCAVTGAKLHLVKPLGFELTDKHLKRCGLDYW--DIADVKIYE 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
                +      Q +  +S  K+        D   L+ G+E KGL  +  E      A +
Sbjct: 63  NFEELEAQYPDAQYVLGTSKVKRTHTDVEYKDGCFLVFGSETKGLSKEIIERHIEDCARI 122

Query: 255 HMP--GIIKALNVSNAAAVALYITQNHF 280
            M      + LN+SNA AV  Y      
Sbjct: 123 PMLDLERARCLNLSNAVAVMTYEALRQL 150


>gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
 gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
          Length = 156

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I+R+         +        E   L +      +      
Sbjct: 1   MSINVVLVEPEIPQNTGNIIRTCANTGAILHLIRPLGFSLEDKYLKRCGLDYWDISEIRY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATS 250
             +  +  +K     +      ++      +    D   L+ G E KGL  P  +    +
Sbjct: 61  YDSFEELQEKYPDAKYFYSTTKANKAHSDME--FEDGCFLVFGKETKGLPKPLIEANMET 118

Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280
              + M      ++LN+SN+ A+ +Y      
Sbjct: 119 CMRIPMLKLEKARSLNLSNSVAIVVYEAMRQI 150


>gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a]
 gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a]
          Length = 283

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 8/218 (3%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           + ++    +A  R   D       PV+ V  +    +           +  A L    L 
Sbjct: 53  LLEVFVGVSAAGRH-EDLLRAAAVPVRLVTDEAAAALSETVTPQ--GLVAVAALPGHRLA 109

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +   +L+ V    NDP N G ++RSA A   D ++ T            +S++G+  H+
Sbjct: 110 DLAAPRLVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSAGSHFHL 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243
           P I     T+ +  + + G + +  S  +++ L+        +   A + G E  GL P 
Sbjct: 170 PVIVEPTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGELDGPTAWLFGNEAHGLDPA 229

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
               A +   + + G  ++LN++ A+A+ LY +     
Sbjct: 230 GLAAADAALRVPVYGQAESLNLAVASALCLYASARAQR 267


>gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519]
 gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii]
          Length = 151

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 5/147 (3%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L     P N G I+R+    +    +        +   L ++    +           +
Sbjct: 1   MLVEPEIPQNTGNIIRTCACINARLHLIKPMGFSMDEKQLKRAGLDYM--DLVSINYYDS 58

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
                      +    ++ +KK   +    D+  ++ G E KGL  +       +   + 
Sbjct: 59  FEELIEDKDINKFYFFTTKAKKNHTEATYEDESYIVFGKETKGLSQEILSLNPNNNVRIP 118

Query: 256 MPGI--IKALNVSNAAAVALYITQNHF 280
           M  +  +++LN+SN+ A+A Y      
Sbjct: 119 MLNMDRVRSLNLSNSVAIAAYEAIRQI 145


>gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 153

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H     + + + A         +    ++ +          D   L+ G E  GL    
Sbjct: 50  YHDLAHVVVHASLAALLDALPASRVWAFTTRATDRYTDVAWRDDDVLLFGPEPTGLPADV 109

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 T    + M    +++N+SNAAAVA Y      
Sbjct: 110 LAHPRVTGEVRIPMLPGRRSMNLSNAAAVATYEAWRAR 147


>gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 167

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R      C   +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +            +      G +   L++            D   L+ G E +GL    
Sbjct: 61  HDYNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDYLMFGPETRGLPSYV 120

Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQL 158


>gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 156

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275
              +    D   ++ G E  GL     ++       + M      ++LN+SN+ A+ LY 
Sbjct: 86  YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALRQL 150


>gi|160946403|ref|ZP_02093612.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
 gi|158447519|gb|EDP24514.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
          Length = 98

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K  +++G E  G+  +  + + +   + M   +++LNVS AAA+ +Y
Sbjct: 42  FTFDGKNIVVMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMY 93


>gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas
           atlantica T6c]
          Length = 241

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  + L  E+    +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKLVSEVPKYPVALVFGRENNGLSNEELQQCHFHVCIPANPEYSSLNLAA 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLCYEIR 157


>gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 178

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 3/156 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   + L+++LD+V    N+G+  R+A  F+   I      +      + K+A GA
Sbjct: 17  NDYKTQEKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGA 76

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240
            E + +  + +   A+Q + + G+Q + +         ++        +A++ G E  G+
Sbjct: 77  TESVDWEYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGNEVSGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  +       +   G   +LN++    + ++  
Sbjct: 137 SDEVMDIVDGALEIPQYGTKHSLNIAVCVGIVVWEL 172


>gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 156

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275
              +    D   ++ G E  GL     ++       + M      ++LN+SN+ A+ LY 
Sbjct: 86  YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALRQL 150


>gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493]
 gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           331]
 gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 152

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P N G I+R          +        +   L ++            I
Sbjct: 1   MFHIALFEPEIPPNTGNIIRLCANAGASLHLIHPLGFSLDEKRLQRAGLDY--REWATII 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                   K      +    ++  K              + G E +GL  + +     + 
Sbjct: 59  HYDHFEAFKSAFAEHRIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N++N  ++ LY     
Sbjct: 119 QIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 569

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +AL+LG E  G+  +       +  + + G+  +LNV++A  V LY     ++
Sbjct: 507 VALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWS 559


>gi|255017825|ref|ZP_05289951.1| hypothetical protein LmonF_08965 [Listeria monocytogenes FSL
           F2-515]
          Length = 81

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           N     + G E  GL      E   +   + M   I++LN+SN AA+  Y       
Sbjct: 8   NKDYFFVFGKETTGLPDALLQENEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQN 64


>gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 156

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H   + +    +     H    +    ++ +  P  +    +   L  G+E  G+  +
Sbjct: 51  YWHKIDLHVWESIEEFMDAHPIKERFFFATTKTDIPYFEHEFQEGDYLFFGSETAGIPSE 110

Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E        + M    ++LN++ ++ + LY     
Sbjct: 111 ILEAYPKQTMTIPMTKEGRSLNLAISSGIILYEAIKQ 147


>gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
 gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
          Length = 168

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 1/96 (1%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +       +   +    ++ +     +         + G E  GL    
Sbjct: 50  YWHKLDINYYDSLDEFFKKNKDGRFFYATTKAANSYHELDYQADDYFLFGKETAGLPETL 109

Query: 245 QE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +        + M   +++LN++N+ ++ +Y     
Sbjct: 110 LKDNLEYCIRIPMKDSLRSLNLANSVSIIIYEALRQ 145


>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
          Length = 520

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 21/236 (8%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETA 119
               +  F +   K  +  L           V+ V    Q +D       VHQGL L+ +
Sbjct: 280 KTTKKNKFNINRDKKNIGALVDILKKCEQLEVEIVPVDKQRLDVFSKF-RVHQGLVLDCS 338

Query: 120 P-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           P                 +A     L++ LD + DP N GAI+R+   F  DG+I T + 
Sbjct: 339 PLTITTLTGLSVPDMTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDGVIVTDKG 398

Query: 169 SPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           S   S   +KS+SGA+E  P  +  +        K   W      +S    K +     +
Sbjct: 399 SIPVSPFASKSSSGAIEEFPIFKCLSLASFLQASKARGWHIIGTSVSDPESKDITNVKID 458

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-----PGIIKALNVSNAAAVALYITQ 277
               L++G EG GL+ K       M  +          I +LN S    + ++  Q
Sbjct: 459 KPTVLVIGNEGYGLKDKVVSHCNEMIMIKGLQRSSNEKIDSLNASVTTGILIHHLQ 514


>gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
 gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
          Length = 155

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL    QE    T    L M    ++LN++N AA+ +Y     
Sbjct: 91  YTPGDVLMFGPESVGLPAAVQEAPEVTDRVRLPMLPTSRSLNLANTAAITVYEAWRQ 147


>gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 241

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +AL+ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQIIAYEVR 157


>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 182

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + +++VLD +   HNIG++ R+A AF  + I      +   +  + K+A GA 
Sbjct: 16  DFKEAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR 241
           E + +    N+ + ++ +         +          + K     K ALI G E  G+ 
Sbjct: 76  ETVVWEHHENVLEVIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNEVFGVN 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +          +   G   +LN+S +  + ++  
Sbjct: 136 QEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWDL 170


>gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334]
 gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC
           334]
          Length = 169

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++     + +  I 
Sbjct: 1   MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIY 60

Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
             +L D +  +    +       +  +    +    +     + G E  GL     ++ A
Sbjct: 61  HDSLDDFMATVKEPQYLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHA 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   ++ALN+SN AA+ +Y     
Sbjct: 121 DQCLRIPMTDNVRALNLSNCAALVIYEALRQ 151


>gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 163

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +        +     ++     E     +  NL
Sbjct: 4   IILFTPQIPPNTGNIIRLCANTGARLHLVKPLGFSLDEKSCRRAGLDYHEMARVQQHDNL 63

Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
              L    M     +   ++    + +           + GAE  GL             
Sbjct: 64  DACLDVLGMSINTQRLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLPDSIHAALGDHQK 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    ++LN+SNA +V LY     
Sbjct: 124 LSLPMLPANRSLNLSNAVSVTLYEAWRQ 151


>gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 155

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL       N GAI RS         +        +   L ++     + +    
Sbjct: 1   MSLNIVLYEPEIHWNTGAIARSCGLTHTRLHLIEPFGFEIDDKHLKRAGLDYWDLVDINI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             N+ +   K     F      +            D+  ++ G E +GL           
Sbjct: 61  YKNVEELYAKYPEGRFFMATTKAKKLYTE--VEFQDEDFIMFGPETRGLPEDMIFGNYDM 118

Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHFA 281
              + M     ++LN++N+A + L+       
Sbjct: 119 AIKIPMLKDFGRSLNLANSANIILFEALRQLN 150


>gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 166

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 2/159 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            P           +VL     P N G ++R A        +        +   L ++   
Sbjct: 1   MPAEPFSSPFMFHIVLVSPEIPPNTGNVIRLAANTGASLHLVRPLGFELDDKKLKRAGLD 60

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             E       ++L  AL  +     +   L++   + + +         + G E  GL P
Sbjct: 61  YHEWAAMQVHNDLDAALNIIGGDPSRRYALTTKGSRLMAEFSFKPGDVFVFGRETAGLSP 120

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                        L M    ++LN+SNA AV ++     
Sbjct: 121 GQLACFPQAQRLRLPMMPQQRSLNLSNAVAVTVFEAWRQ 159


>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
 gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 84/298 (28%), Gaps = 67/298 (22%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104
           + F+YG  +V AA+    RK ++L      +       +      +  +  +  D+    
Sbjct: 345 SEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAILSTIRSLKLFHIAVEVGDEYMQA 404

Query: 105 ---VGKEAVHQGLALETAPLLSPTLDAVR------------------------------- 130
                    H GL LE +P     +  +R                               
Sbjct: 405 MDKASNGRPHNGLILEASPPPILPITQLRAASIEEGAFNLSLDRQSAEEEAINGKQELYE 464

Query: 131 ------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---------- 174
                    L++ +D V D  N+GAI RSA     D IIT   ++   S           
Sbjct: 465 YKSDGWRHPLILYIDGVVDEGNLGAIARSAYVLGVDAIITPTHHTAEWSPIAIKASSGAA 524

Query: 175 ---------VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                       +    + +    I  S+     ++        +             + 
Sbjct: 525 EAIPLFRVKEPEQFLHSSSQVGWRIYASDAVPLSKQDGRQVVYAVAKKYSPLPAYHSPLA 584

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYITQN 278
                L++G+E  G++    + A     +          + + NVS A  +  Y    
Sbjct: 585 EHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVATGILCYQMMQ 642


>gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 155

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENIIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
 gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
          Length = 237

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +AL+LG+E +G+RP  ++   ++  +     I +LNV+ A A+ +
Sbjct: 173 HLAKPPFPLALVLGSEEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIMM 225


>gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210]
 gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148]
          Length = 154

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    L+ G E  GL   T      T    + M    ++LN+SNAAAVA+Y     
Sbjct: 91  YHAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 266

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 72/229 (31%), Gaps = 11/229 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG 106
           + L G H +  AL   +     +   + A+  L  +    L        VP         
Sbjct: 39  VLLDGFHALKHALRFGADVPLAVAEDRAAVLALADELAPDLAPRLAELLVPVPPALYRSL 98

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               H       A        A   +  L+VLD   +  N GA++R A  F   G++TT 
Sbjct: 99  VPRPHPTGVAALAGRPPEPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTG 158

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
              P            A+             A + +       +       + L      
Sbjct: 159 DLDPWHP---------AVVRAGAGLHFATPVARRAVPELPAGPLWAFDAEGEDLRGLRVP 209

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           D   L  G+E  GL    +E A  +  L M   + + N++ +  +ALY 
Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYH 258


>gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
          Length = 209

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      K  L+LG E +G   +          +   G I++LNV  + A+ ++
Sbjct: 144 QDAKLPQKTVLVLGNERRGCPEEILSLCDMTVEIQQLGNIRSLNVHVSCAIFVW 197


>gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
                A I+G EG GL    +       ++   G    +LNVS AA++ ++   
Sbjct: 90  FEGSTAFIMGNEGDGLTDAQKAICDGFVYIRQHGVGTASLNVSVAASIVMHHFA 143


>gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex]
          Length = 177

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K ALILG E +G+  +  +       +   GII+++NV    A+ ++     
Sbjct: 111 NHFTFPKKSALILGHEKEGIPVELIQHLDVCVEVPQEGIIRSMNVHVTGAIFIWEYARQ 169


>gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 257

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +A++ G E +GL     +      H+       +LNV+ AA V  Y  
Sbjct: 108 RGDVAIVFGREERGLTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYEL 158


>gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W]
 gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II]
          Length = 169

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++     + +  I 
Sbjct: 1   MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIY 60

Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
             +L D +  +            +  +    +    +     + G E  GL     ++ A
Sbjct: 61  HDSLDDFMATVKEPQHLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHA 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   ++ALN+SN AA+ +Y     
Sbjct: 121 DQCLRIPMTDNVRALNLSNCAALVIYEALRQ 151


>gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1]
          Length = 250

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           AL+ G E +GL     E A  +  +       +LN++ A AV  Y   
Sbjct: 111 ALVFGREDRGLTNAELECAHGLVKIPTANTYPSLNLAQAVAVCCYELW 158


>gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
 gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
          Length = 257

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
 gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
          Length = 168

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +  + +VL     P N G I R+ VA      +            L ++     +H+
Sbjct: 1   MKYSPVIHIVLHEPEIPPNTGNIGRTCVAIGAKLWLVKPLGFLVNDRELKRAGMDYWQHL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + +     +++    F  +  ++               A++LGAE KGL P+   T
Sbjct: 61  EWEVVEDWAHLQERLKDRRFFYLTKTAKRSYTTVDFQLE--DAIVLGAESKGLPPELLAT 118

Query: 248 A-TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   + M   +++LN+S  AA   Y       
Sbjct: 119 TPENNISVPMRTEVRSLNLSATAATVAYEAVRQLT 153


>gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 176

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 3/161 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    +++VLD+V   HN+G+  R+A  F+ D +      +      + K+A GA 
Sbjct: 16  EFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPPHREIEKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241
           + I +   +N+ DA+  +   G+Q I +            +  K+ K AL  G E  G+ 
Sbjct: 76  QSIDWQYFANVADAVADLKENGYQIIAIEQAENSISLLDFEPKKDQKFALFFGNEVNGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +   +   +   G   + N+  +  + L+   +   K
Sbjct: 136 EEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFSKLNK 176


>gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
 gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
          Length = 222

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+          + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +     
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNGTPCH 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET 247
           +   K  KIALI+G EGKG+    +  
Sbjct: 194 KWNTK-GKIALIIGNEGKGISSNIKNK 219


>gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 172

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++  +   +L
Sbjct: 8   IVLYQPEIPANTGNISRTCAGTDTFLHLIRPLGFSTDDKMLKRAGLDYWDNVKLVYHDSL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATS-MAH 253
              L+         I                +K    I G E  GL  +  +        
Sbjct: 68  EAFLEASKDGELYFITKFGRHVYSDVSYQDTNKDYYFIFGKETTGLPDELLQQHEETCLR 127

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M   I++LN+SN AA+ +Y       
Sbjct: 128 IPMTDKIRSLNLSNTAALVIYEVLRQQN 155


>gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
 gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
          Length = 150

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P+N G I R A+A   +  +        +   L ++      HI    
Sbjct: 1   MPLNIVLFEPEIPNNTGNIGRLALATGSNLHLVKPFGFELDDKRLKRAGLDYWPHISLFT 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             N+ +  ++ +      +  SS  +K        D + LI G E  GL  +  +  +  
Sbjct: 61  YENIEEFYKQHNDKNL--VYFSSHGEKNHWSIDYKDDMYLIFGKESVGLPKEILQNNSDK 118

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNHF 280
           +  + +    I++LN++NA  V +Y      
Sbjct: 119 LYKIPLFSSKIRSLNLANAVGVTIYEGLRQL 149


>gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 155

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +      
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 156

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275
              +    D   ++ G E  GL     ++       + M      ++LN+SN+ A+ LY 
Sbjct: 86  YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALRQL 150


>gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 160

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAV 271
            +        L+ G E  GL       + S+  + MP           +++LN+S A  +
Sbjct: 86  NRFRFLKDDILLFGREDTGLPESVINGSNSLISIFMPNVELSNNDKKGVRSLNLSVACGI 145

Query: 272 ALYITQNHFA 281
           A+Y       
Sbjct: 146 AIYEANKQIN 155


>gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 220

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +V++++    NIG I+R+A AF  + +    R   +    +       + H   
Sbjct: 66  RRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 125

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +      A + +          +   +          + AL+ G EG GL P+ + TA 
Sbjct: 126 AQAFADYAAGRGLAVIAVDNTPGAEPMET----FALPRRCALLFGQEGTGLSPELRGTAQ 181

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           S   +   G  +++NV  AA +A++     
Sbjct: 182 SALAIAQFGSTRSINVGVAAGIAMHAWVRQ 211


>gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 173

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 50/147 (34%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   +    +   H            +    +   ++S    A+   +       +
Sbjct: 21  HHHQCWDHLTAAPLWPQHGANLGTLLRSCDAVGACLAVPKWSWVPEALRRGNTLPGKACV 80

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            ++       A ++        + L+ D+ +  +  +   +   +LG E +G+ P+  + 
Sbjct: 81  HWVHDPEGWLAQRRAEGVRVVGVELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDL 140

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + M G   +LNV+ A ++ LY
Sbjct: 141 LDEVVEIPMIGAGASLNVAVAGSLVLY 167


>gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2]
 gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2]
 gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2]
          Length = 237

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            KIALI G E  GL  +       + ++        LN+S+A  + LY    + 
Sbjct: 102 KKIALIFGRESVGLTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNR 155


>gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 154

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T   A       + M    ++LN+SNAAAVA+Y     
Sbjct: 91  YRAGDVLMFGPEPTGLDAATLADAHITEQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
 gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
          Length = 160

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+ V  +    +        +   L ++     +++      
Sbjct: 8   LNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYE 67

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SM 251
           +  +  +K     F                  +D   ++ G E  GL  + ++ +     
Sbjct: 68  SYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPSKC 124

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNH 279
             + M     ++LN+SN  A+  Y     
Sbjct: 125 IRVPMINTTTRSLNLSNTVAIVTYEALRQ 153


>gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 168

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++K+ LI G E  G+         S+ H+ M G   ++NV+ A  ++LY    
Sbjct: 112 SEKVVLIAGHENFGISEDLLRLCDSIVHIPMFGNNSSMNVAQAIGISLYEITK 164


>gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 160

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL       N G + R          +            L ++          +  
Sbjct: 1   MIHVVLFQPEIAPNTGNVGRMCALTRSRLHLIHPLGFVINDRNLRRAGMDYW-RALDVHE 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                + +       +    ++ S +        D   L+ G EG G             
Sbjct: 60  HRDWASFRASAVAPRRLWLFTTKSTRCFWDARFEDGDGLVFGNEGSGAPEWLHAEIGDEQ 119

Query: 251 MAHLHM-PGIIKALNVSNAAAVALYITQNH 279
              +      +++LN+S AA +A Y     
Sbjct: 120 RVTIPHANPELRSLNLSTAAGIATYEALRQ 149


>gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
 gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
          Length = 248

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  + +  E    K AL+ G E +GL     +      H+       +LN++
Sbjct: 92  PWPLLNPRECGEKIYSEAAEHKTALLFGREDRGLTNDELQKCHYHVHIPSNPDYSSLNLA 151

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 152 TAVQVLAYEVR 162


>gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 158

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 2/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +  +VL     P N G I R   A +    +            L ++     +H+   
Sbjct: 1   MQRFHIVLHQPRIPQNTGNIGRLCFASNSILHLIYPLGFHLTQKELKRAGMDYWQHLEVY 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              NL   +             +   K        +    L  G E  GL  K  +    
Sbjct: 61  EWENLESFMSSSLLNLPHFYLTTKTQKPYY-NANLSKGAYLHFGREDAGLDTKILQAKQQ 119

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M    ++LN++ +  + LY      
Sbjct: 120 DCYTIPMQNNARSLNLATSVGIVLYEGIRQR 150


>gi|311112473|ref|YP_003983695.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943967|gb|ADP40261.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 246

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+ G EG GL  +    A     +   G  +++N + AA +A++     
Sbjct: 183 YDLPKNCVLVFGQEGPGLSEEIHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRR 239


>gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
          Length = 156

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG--IIKALNVSNAAAVALYI 275
              +    D   ++ G E  GL     ++       + M      ++LN+SN+ A+ LY 
Sbjct: 86  YYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDCIRIPMHEVISTRSLNLSNSVAIVLYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALRQL 150


>gi|320170244|gb|EFW47143.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 220

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +    L++G E  GL       A  +  + + G+  + NVS A A+A+Y     
Sbjct: 158 YDYRFDRNTVLVIGNEKSGLTQDILNLADDILEIPIYGMPYSHNVSAATAIAIYEYCKQ 216


>gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 174

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 1/148 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  L+          N+G +LR+  A      +    + P   A        A  H
Sbjct: 22  SHSCWDHLIAAPLWPMHEANLGTLLRTCDAVGACLAVPRLPWVPEALARGNTLRHPACIH 81

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               ++S LT    +  +            +         ++  L+LG E  G+ P    
Sbjct: 82  WTGDQLSWLTHQHTRTDTTIVGAELADEALRLADLP-PARNRTVLVLGHERDGIPPDAVA 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M G   +LNV+ A ++ LY
Sbjct: 141 LLDLAVEIPMVGTGASLNVAVAGSLVLY 168


>gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Hydra magnipapillata]
          Length = 183

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--- 198
            DP N+GAI+RSA  F  D II  ++ S   +A ++K +SGA+E        ++      
Sbjct: 35  QDPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKD 94

Query: 199 --LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH- 255
                 +  G  T   +            + +  L++G EG G+ P      T +  +  
Sbjct: 95  LLNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPS 154

Query: 256 ----MPGIIKALNVSNAAAVALY 274
               +P  + +LNVS A  + L+
Sbjct: 155 FNDRLPEGLDSLNVSVATGILLH 177


>gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum]
          Length = 237

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVAL 273
              + L LG+E +GL      +   +  +   G               +LNV+ A  + L
Sbjct: 155 PRPLVLALGSESRGLSENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILL 214

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 215 YQLTMYR 221


>gi|66362096|ref|XP_628012.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
 gi|46227488|gb|EAK88423.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
          Length = 1808

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 2/215 (0%)

Query: 68   IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            + + +  K        +           +      ++  +   +  L             
Sbjct: 1587 LLKKIICKEMSGYYAQEKEEKEEHNAIEIQRSHNYQLKFEPPHYDSLISGEPRSRRSDNR 1646

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE-- 185
             +  S L+++   V+   NI  I R+   F  + ++ + +   ++      S +      
Sbjct: 1647 LLNRSGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKKVMNDPIFRQISVTAEKWLP 1706

Query: 186  HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                          +K            + S   ++  +  +K  LILG E +G+  +  
Sbjct: 1707 INELEPTKIKEYVQRKRMEGYKIFGLEQTSSSISIKGCVFPEKSVLILGKEKEGIPSEIV 1766

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    +   GII++LNV  +A++ +Y     F
Sbjct: 1767 SIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQF 1801


>gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 251

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158


>gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
 gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
          Length = 218

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 1/155 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L   L+ +    N  A +R+        I        + +     +   +    
Sbjct: 29  NRRTNYLTFALEDIFHSQNASATVRTGEILGFSNI-HVIDKKNNYTLNPDITLGSSQWIN 87

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +     +             ++    LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKDSKFAIDRLKSDGYSIVATSLNEQSINLENFPINNKMAVFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A  + +Y       K
Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVGIVMYSLLIRLRK 182


>gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
 gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
          Length = 219

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 4/194 (2%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D N       +    +  D+      + +    E   +            L++VLD+V  
Sbjct: 19  DLNANKGASYREK-RKKTDETTNNTGMEKLKLDELNRVSIEEFKEQEKLPLVVVLDNVRS 77

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            HNIG+I R+   F+   +      +      + K+A GA + + +    +  +A++ + 
Sbjct: 78  MHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDWKHYESTLEAVKALR 137

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G+  I +   S   +    K     K ALI G E  G+  +  E       +   G  
Sbjct: 138 EEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGVSDEVMEVIDECIEIPQFGTK 197

Query: 261 KALNVSNAAAVALY 274
            + N+  +A + L+
Sbjct: 198 HSFNIVISAGIVLW 211


>gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           W619]
          Length = 251

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158


>gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 253

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + + +   +  V       +   +   LD  R     + +++     NIG ++R+A A 
Sbjct: 69  DEELLREGDRRNVVDKYRYWSMDAIIADLDT-RRHDFHVAIENWQHDLNIGTVVRTANAM 127

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +    R   +    +       + H P I         + +   G           
Sbjct: 128 LAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIEDFVAWAQGEGLEIIGIDIFP----DS 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            PLE      K  L+ G EG GL  +    A     +   G  +++N + AA +A++   
Sbjct: 184 VPLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWV 243

Query: 278 NH 279
             
Sbjct: 244 RR 245


>gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
 gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
          Length = 158

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T    + M    ++LN+SNAAAVA+Y     
Sbjct: 95  YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 151


>gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv]
 gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97]
 gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra]
 gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
 gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506]
 gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475]
 gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A]
 gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
          Length = 154

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T    + M    ++LN+SNAAAVA+Y     
Sbjct: 91  YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 163

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           N K  L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 110 NGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 157


>gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
 gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
          Length = 257

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
 gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
          Length = 1127

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%)

Query: 176  LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            ++ +A   L        + +    +K            S     L+      K  L+LG 
Sbjct: 1017 MSMTADMWLNIEEVQPCNLVQWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKAVLVLGN 1076

Query: 236  EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E KG   +          +   G I++LNV  + A+ ++
Sbjct: 1077 ERKGCPEEILSLCDMTVEIQQLGNIRSLNVHVSCAIFVW 1115


>gi|238062522|ref|ZP_04607231.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237884333|gb|EEP73161.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 210

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + AL+ G EG GL    +     +  +   G  +++N   A+ +A++    
Sbjct: 149 LPRRCALLFGQEGPGLSDAARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 202


>gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 246

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             +  + + LD++   HN+G+I+R+  AFS   I  + +   +    +   + GA +   
Sbjct: 85  NPSWPISIYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAYQ--- 141

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                                   +S+    L + I  +   L++G E  G   +    A
Sbjct: 142 ---WVKCYQNEDLNDLTQPIIALETSEEAINLYEFIFPEHFTLVVGNEEYGCSQEILTKA 198

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + + G   +LNV+NA A+          
Sbjct: 199 HYLIEIPLRGRKNSLNVANAFAITAGEIYRQRK 231


>gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 157

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I R+ +A      +       ++S ++ ++     EH+    
Sbjct: 1   MSVHVVLFEPEIPANTGNIGRTCLATGVTLHLIHPLGFSTDSKMVRRAGLDYWEHVDVRE 60

Query: 192 ISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
             ++ D       +  +      +      +    +     + G E  G+  +       
Sbjct: 61  YQSIEDLYETYPDAGFYYIENFGTKHYTDFDFSDSDMDQFFVFGKESTGIPKELLIGKED 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +HM   +++LN+SN +A+ +Y     
Sbjct: 121 QCLRIHMNDKVRSLNLSNTSAIIIYEVLRQ 150


>gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 176

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181
                    L++VLD+V   HNIG++ R+A  F+ + +       R    E    A  A+
Sbjct: 16  EFKEQEKLPLIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALGAT 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            ++    +    +   +L+            +  +     +   + K ALI G E  G+ 
Sbjct: 76  QSVAWAHFETTVDAIASLKADGYHIIGIEQAAGSTMLNTYKPTYSKKYALIFGNEVNGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +   G   + N+  +A + L+
Sbjct: 136 DEVMAQIDECIEIPQFGTKHSFNIVISAGIVLW 168


>gi|302757075|ref|XP_002961961.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
 gi|302775416|ref|XP_002971125.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300161107|gb|EFJ27723.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300170620|gb|EFJ37221.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
          Length = 186

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  ++ L+LG E  G+     +T  +   +   G+I++LNV  + A+A++     
Sbjct: 120 NNYSFPSRVVLVLGREKDGIPVNLIQTLDACLEIPQLGMIRSLNVHVSGAIAVWEYTKQ 178


>gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568]
 gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 244

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGIRAVHEGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYEVR 157


>gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 155

 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R          I            + ++     + +  I  
Sbjct: 1   MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            NL + L +   +  +    ++ S+K            L  G+E  GL  +  +    + 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSRKAYFNTEFQKNDFLFFGSESYGLPMELMQLNWKNA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 218

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 5/180 (2%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +      V           +   LD  R     + +++     NIG+I+RSA AF+ 
Sbjct: 39  ELLERGDTRNVIDRYRYWRMDAIVADLDQHR-HPFHVAIENWQHDMNIGSIVRSANAFAA 97

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +    R   ++   +       + H   I         + +       +  S   +  
Sbjct: 98  DTVHIVGRRRWNKRGAMVTDRYQHVVHHATIADLVEWARGEGLPIIAIDNVDGSVLLET- 156

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  ++  L+ G EG GL  +    A     +   G  +++N S AAAV ++     
Sbjct: 157 ---TRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQ 213


>gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 177

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 3/155 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LD++   +NIG++ R+A AF    I      +      + K+A GA E + +
Sbjct: 21  QKTPLILILDNIRSLNNIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALGATETVAW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE 246
               N  + ++++ +       +          ++        ALI G E KG++     
Sbjct: 81  EYRENTLELVKELQAQSIAVWSVEQAQGATFLDKMSLQPETTYALIFGNEVKGVQQAVVN 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  +  +   G   +LN+S +A V ++      +
Sbjct: 141 ESDGVVEIPQFGTKHSLNISVSAGVVVWDFWKKLS 175


>gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM
           44702]
          Length = 164

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALN 264
            +    ++ +              L+ G E  GL  +  +    T    + M    +++N
Sbjct: 83  HRVFAFTAHADTWFTDITYEPGDVLLFGTEPTGLEQQALDDPRVTQHVRIPMLPGRRSMN 142

Query: 265 VSNAAAVALYITQNH 279
           ++NAAAVA Y     
Sbjct: 143 LANAAAVATYEAWRQ 157


>gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 158

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       +   +    L+ G E +G+      +     
Sbjct: 59  KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPMDILNSMPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 213

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E       L+ G EG GL  + ++ A  +  +   G  +++N   AA +A++     
Sbjct: 150 EPLPRACVLLFGQEGTGLSAEARDAADGVLSIAQFGSTRSVNAGVAAGIAMHAWVRQ 206


>gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 165

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 3/158 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                   +   + +V DH+    NIG++ R + AF  + II   +  P     + K++ 
Sbjct: 5   HEENQFERKTFPITLVCDHIYFQQNIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSR 64

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGK 238
               H+P+  I   T+    +    F+       S+          K+ K AL++G+E  
Sbjct: 65  STHLHVPHQIIEETTELTAYLQENNFEIIALEITSNSKPLKEVLIPKDKKTALLIGSEIA 124

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+  +  + +  + H++M G   ++NV  AA++ALY  
Sbjct: 125 GISEELLKISHQIVHINMFGKNSSMNVVQAASIALYEI 162


>gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT]
          Length = 160

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +    L +VL     P N G I R+ V  +    +        +   L ++      H+
Sbjct: 1   MLDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                 +  D ++K                   E + K     ++ G E  GL    ++ 
Sbjct: 61  DVEVHESFDDMIKKYPDANIYLSTTKEAKYHHDEVKYKTG-DFIVFGRESSGLPEYIRDR 119

Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280
              +   + M     ++LN+SN  ++  Y      
Sbjct: 120 YVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQL 154


>gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 153

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++      P N G  +R A    C+  +        E   L ++      H      
Sbjct: 1   MFRVLFYRPEIPPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDY--HDLARVH 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A         +    S+ + +            L+ G E  GL  + Q  A  T 
Sbjct: 59  VHADLAAAWQVLLPAKVYAFSATATRLYTDVSYAPGDVLMFGPESAGLPDEVQRAAEVTD 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN++N AA+A+Y     
Sbjct: 119 RLRLPMLPNNRSLNLANTAAIAVYEGWRQ 147


>gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311]
 gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311]
          Length = 176

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 9/174 (5%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             + +   S    ++    L + L     P N G I R+  AF     +        E  
Sbjct: 1   MNKVSNNQSSEEQSLIQKPLRVALFEPRIPPNTGNIARTCAAFGLPLDLIEPLGFSLEDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            L ++      H+      ++    + +                    E       L+ G
Sbjct: 61  YLKRAGLDYWPHVDLTIHKDVDAFFESLAQPSRVIGCSRRGGILLRNME-FQKGDVLLFG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
            E  GL    +     +  + MP        G +++LN+S A A+  +   +  
Sbjct: 120 REDTGLPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQAGSQL 173


>gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
 gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
          Length = 179

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +   A+I G E KG++    + +     +   G   +LNVS  A + ++    
Sbjct: 119 HPSLSKGYAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAK 175


>gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 218

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V       T   +   LD  R     + +++     NIG ++RSA AF    +   
Sbjct: 42  DRRNVADKYRYWTMDAIIADLDE-RRHDFHIAIENWQHDMNIGTVVRSANAFLAKEVHII 100

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   +    +       + H   +           +   G            PLE    
Sbjct: 101 GRRRWNRRGAMVTDRYQHVRHHATVEEFVAWAQEAGLTILGIDIFP----DSVPLETYDL 156

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L+ G EG GL P+    A     +   G  +++N ++AA +A++     
Sbjct: 157 PKNCVLVFGQEGPGLSPEVHAAAKDTLSIEQFGSTRSINAASAAGIAMHAWVRR 210


>gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
 gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
          Length = 218

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L  VL+ +  PHN  A +R+        +   ++ +   +     +   +      
Sbjct: 31  RTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIEKNNKC-TLNPDITLGSSQWINLN 89

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +   +         ++    LE    N+K+A+  G E  GL  +    A 
Sbjct: 90  KYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFFGTELTGLSAEVLGAAD 149

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G  ++ N+S A A+ +Y
Sbjct: 150 LCVKIPMYGFTQSYNISVAVAIVIY 174


>gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus
           UQM 2246]
          Length = 269

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +A++ G E  GL  +       + ++       +LN++ A A+  Y  +  ++K
Sbjct: 113 GPVAVVFGPEPHGLSNEEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSK 168


>gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
 gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
          Length = 248

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            KIA++ G E +GL  +         H+       +LN++ A  V  Y  +
Sbjct: 107 KKIAIVFGREDRGLTNEELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELR 157


>gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 127

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +          +   +   +S+   +        +   ++ G E +GL       
Sbjct: 27  WQDMRTYENWDDFISQTAPKRLFAISTKGARHYHDIEFANDDYVVFGPETRGLPDNVLYH 86

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              T    + M    +++N+SN+ AV +Y +   
Sbjct: 87  TLMTEQVRIPMTENSRSMNLSNSVAVIVYESWRQ 120


>gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 153

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N  AI+R+      D  I              +     +     +     
Sbjct: 7   IALYEPDIPQNTAAIIRTCACLGADLEIIEPCGFLFSDKRFKRVVMDYM--DEKMIRFYQ 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +           + I L++ S              L+ G E  G+             + 
Sbjct: 65  SSDEFFKSKKNERVILLTTKSADSYTDFKFESNDTLLFGRESAGVPDHVHNLIKYRLKIP 124

Query: 256 MPGIIKALNVSNAAAVALYITQNH--FAK 282
           M    ++LN++++ A+ L        F K
Sbjct: 125 MMDNKRSLNIASSVAIILSENLRQTNFNK 153


>gi|315498163|ref|YP_004086967.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416175|gb|ADU12816.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 159

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N+G+ LR          +      P     + ++A          R  + 
Sbjct: 3   LALFQPDIPQNLGSALRLCACLDVALDVIEPCGFPLSDRAIRRAAMDYGGQADVTRHDSW 62

Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 +       + +  ++   +P +         L++G E  G+       A +   
Sbjct: 63  AAFLNRRDDWPQDTRIVLFTTKGAEPYQNFQFGPHDILLMGRESAGVPDDVHNAAEARLL 122

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M   ++++NV NAAA+AL      
Sbjct: 123 IPMRPGMRSINVINAAAMALGEALRQ 148


>gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
 gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
          Length = 244

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRAVHEGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYEVR 157


>gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
 gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
          Length = 586

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 104/310 (33%), Gaps = 75/310 (24%)

Query: 48  NLFLYGVHTVSAALNNPS---RKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQT 100
           + FLYG   V AALN      RK+++L   K        R    A L     V+    + 
Sbjct: 254 SEFLYGTSVVEAALNARRKRSRKLYKLYILKGEDRQNGERDGAIAKLAQKKGVEVAIVRG 313

Query: 101 IDKI-----VGKEAVHQGLALETAPLLSPTL----------------------------- 126
            D +     + +   H G  LE +PL    L                             
Sbjct: 314 HDWLRTLDKMSQGRPHNGYILEVSPLPRLPLMSLGSIIDQDDSFAIKLTPDHQSREEIEV 373

Query: 127 -----------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                      D+     L+++LD + DP N+GAILR+A+      +  + R S S + V
Sbjct: 374 NGNDTIIKVAKDSTGRKPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSASFTPV 433

Query: 176 LAKSASGALEH--------------------IPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           + K+++GA E+                                 +      +        
Sbjct: 434 VFKASAGAAENIEIFSVNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPTSQEFV 493

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVA 272
               L+  +++D   L++G EG+GLR   ++ A     +   G    + +LNVS A  + 
Sbjct: 494 WTHDLQDPLRDDPCILMVGGEGEGLRKALRDHADVHLSIKGAGNRGRLDSLNVSVATGML 553

Query: 273 LYITQNHFAK 282
                    +
Sbjct: 554 CDAFMRQTTR 563


>gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 277

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 8/222 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG + V A        I +L   +  +  L       + H    + V    ++K+    
Sbjct: 36  LYGFNAVRAVYARRPEAIRKLYLAEARIPALQPLLKWCVAHRVGYRVVDDNDLNKLAA-S 94

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A H+G+  +        L            L + LD V +PHN GAILRSA  F    I+
Sbjct: 95  AHHEGVVADVLREAPLPLADWLRTLAPGPALALWLDGVGNPHNFGAILRSAAHFGAAAIL 154

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  + + S   A+ A G  E +P +R+     AL ++ +  F       +    L   
Sbjct: 155 LPEGATLALSGAAARVAEGGAEAVPLVRLPAPAQALAQLRNADFALAATLVEGGDALFAT 214

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               ++  ++GAE  G+     +       +   G +++LNV
Sbjct: 215 ALPQRLIYVMGAERDGMDRGFAQACDLRLSIPGSGAVESLNV 256


>gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
 gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
          Length = 257

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSAHEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYEVR 157


>gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
 gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
          Length = 154

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFAKLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +           G +   L++  K    +    +    + G E +GL  +  +T     
Sbjct: 59  VHENFEDCLKALEGRRIFALTTKGKTRPNEVSFVEGDVFLFGPETRGLPAEILDTLPEGQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV L+     
Sbjct: 119 KLRLPMKPGSRSMNLSNTVAVILFEAWRQ 147


>gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
 gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
          Length = 158

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     D  A + G E +GL     E+        + M    ++LN+SN  AV ++   
Sbjct: 90  YDTPQFADGDAFLFGPETRGLPADVLESIPPQHRLRVPMRPDNRSLNLSNTVAVMVFEAW 149

Query: 278 NH 279
             
Sbjct: 150 RQ 151


>gi|262203919|ref|YP_003275127.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262087266|gb|ACY23234.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 225

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    Q  A     +   G  +++N   AA +A++     
Sbjct: 163 LPRECVLLFGQEGPGVSDDAQAQADLTVSIAQFGSTRSINAGVAAGIAMHSWVRQ 217


>gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 246

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 22/70 (31%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                          + ++  +AL+ G E  GL     +       +       +LN++ 
Sbjct: 91  WPEIDPKQCALYSLHQAESGPVALVFGCERTGLSNLELQKCHYHVVIPTNPEYSSLNLAM 150

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 151 AVQILSYEIR 160


>gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 158

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       +        L+ G E +G+     +      
Sbjct: 59  KHKTFEAFLESEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AVA+Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148


>gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 236

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 6/185 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
              P+ +D   G                       R   L + +++  +  NIG ++R+A
Sbjct: 50  YFDPELLDN--GDRRNVVDEYRYWRMEAIIADIDTRRHSLHIAIENFENDSNIGTVVRTA 107

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF+ D +    R   +    +       LEH P +           +          S 
Sbjct: 108 NAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPTVADVLEYARKHDLTVVAVDNTPGSV 167

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +          +  L+ G EG G+ P+ Q  AT    +   G  +++N   AA +A++
Sbjct: 168 PLET----ADLPKRCLLLFGQEGPGVTPEAQAGATQTVSIAQFGSTRSINAGVAAGIAMH 223

Query: 275 ITQNH 279
                
Sbjct: 224 AWIRQ 228


>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
 gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
          Length = 183

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD V   +N+G++ RS  AF  + +      +      + K+A G  + + +   
Sbjct: 24  PLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEWKYF 83

Query: 193 SNLTDALQKMHSWGFQTIGLSS--------DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            N  DA+ ++H  G+    +          + +  + Q   +   A+I+G E KG++ + 
Sbjct: 84  KNTEDAVNELHKKGYYVYSIEQVEGSTKLQNLEVDIRQHNTDQHYAMIMGNEVKGVKQQV 143

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + +     +   G   +LNVS  A + ++    + A
Sbjct: 144 VDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKNLA 180


>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
 gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
 gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
 gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 155

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    +        +   L ++     +++    
Sbjct: 1   MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249
             +  +  +K     F                  +D   ++ G E  GL  + ++ +   
Sbjct: 61  YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPS 117

Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279
               + M     ++LN+SN  AV  Y     
Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 154

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++        N G  +R+A A  C+  +            L ++      H      
Sbjct: 1   MFKLMFYSPRIAPNTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDY--HDLASVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            + + A         +    +S +     Q        L+ G E  GL   T      T 
Sbjct: 59  VHASLAAAWDALSPERVFAFTSHAPTSFAQVRYRAGDVLMFGPEPTGLDAATLADPHITG 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SNAAAVA+Y     
Sbjct: 119 QVRIPMLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 158

 Score = 70.6 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +Q    D  A + G E +GL      +        L M    ++LN+SNA AV ++   
Sbjct: 90  HDQPAYADGDAFLFGCETRGLPEDVLGSIPEAQRLRLPMRPGNRSLNLSNAVAVLVFEAW 149

Query: 278 NH 279
             
Sbjct: 150 RQ 151


>gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 221

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 4/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +V++++    NIG ++R+A AF    +    R   +    +       + H   
Sbjct: 68  RRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 127

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                       +          +   +          + AL+ G EG GL P+ +  A 
Sbjct: 128 PEEFARYAQAHHLAVVAVDNTHGAEPVET----FALPRRCALLFGQEGSGLSPELRAIAQ 183

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           S   +   G  +++NV  AA V ++
Sbjct: 184 SAVAIAQFGSTRSINVGVAAGVVMH 208


>gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 251

 Score = 70.6 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + + +   +  V       +   +   LD  R     + +++     NIG ++R+A A 
Sbjct: 67  DEELLREGDRRNVVDKYRYWSMDAIIADLDT-RRHDFHVAIENWQHDLNIGTVVRTANAM 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +    R   +    +       + H P I         + +   G           
Sbjct: 126 LAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIEDFVAWAQGEGLEIIGIDIFP----DS 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            PLE      K  L+ G EG GL  +    A     +   G  +++N + AA +A++   
Sbjct: 182 VPLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWV 241

Query: 278 NH 279
             
Sbjct: 242 RR 243


>gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 247

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL  +  +   S+  +       +LN++ A  V  Y  +
Sbjct: 108 QRPVALLFGREQSGLSNEELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELR 159


>gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 236

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL+ G E  GL  +  +    +  +   G   +LN++ A  V LY    
Sbjct: 106 VALVFGRERTGLTSEEVQACDLILTIPSSGSCPSLNLAQAVMVVLYELMR 155


>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 186

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + A++LG E KG++    + + +   +   G   +LNVS  A + ++   
Sbjct: 130 KRYAVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWEFA 180


>gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris]
          Length = 948

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q    ++  L+LG E +G+     +       +   GII++LNV  + A+ ++     
Sbjct: 881 QYSFPERSLLLLGNEREGIPANLIQELDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 938


>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 175

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L+++LD+V   HN+G++ R+A  F   G++            + K+A GA E + +
Sbjct: 16  DKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGATETVEW 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246
              +  T+A+  +   G+  + +       +  +        +ALI G E  G+  +  +
Sbjct: 76  QYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPASDKPLALIFGNEVSGVDAEVMK 135

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +   G+  +LN+S +  + ++  
Sbjct: 136 MVEGCIEIPQSGMKHSLNISVSTGIVVWDI 165


>gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500]
          Length = 405

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             I L+ G E  GL  +  +    +  L M G  ++LNV+ +  +  Y+    F 
Sbjct: 344 PPICLLFGNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAYVVTQRFK 398


>gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae]
          Length = 167

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     R 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +                   G +   L++         +      L+ G E +GL    
Sbjct: 61  HDYFAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDYLMFGPETRGLPAYV 120

Query: 245 QE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    +    + M    +++N+SN+ AV ++      
Sbjct: 121 LDGLPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158


>gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
 gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
          Length = 248

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +AL+ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSVQEAQHAPVALVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILSYEVR 157


>gi|300175076|emb|CBK20387.2| unnamed protein product [Blastocystis hominis]
          Length = 698

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +K+AL+LG E +G+  K  +       +   GII++LNV  + ++ ++ 
Sbjct: 530 FPEKMALVLGKEKEGIPAKIIQMLDLCIEIPQFGIIRSLNVHVSGSILIWE 580


>gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 241

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQIIAYEVR 157


>gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 241

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQIIAYEVR 157


>gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 165

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G          + +        +   +    ++ +              ++ G E  G+ 
Sbjct: 48  GMDYWEDLDVTTYINYEDFLEKNPNAKIYMATTKAPNVYTDVSYEPDCYIMFGKESAGIP 107

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +           + M   I++LN+ N+ A+ LY     
Sbjct: 108 EEILVLHKEDSIRIPMSQDIRSLNLGNSVAIVLYEALRQ 146


>gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
 gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
          Length = 233

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 I LI G EG GL  +       +  +      + +NV++AAA+  Y    
Sbjct: 101 INYGGNICLIFGREGNGLSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYELFK 156


>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 160

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------IIKALNVSNAAAVAL 273
              ++   L+ G E  GL       + S+  + MP           +++LN+S A  +A+
Sbjct: 88  FRFHEDDILLFGREDTGLPNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAI 147

Query: 274 YITQNHFA 281
           Y       
Sbjct: 148 YEAYKQIN 155


>gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
 gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
          Length = 1320

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               K  L+LG+E  G+  +          +   G+ ++LNV  A  +ALY    
Sbjct: 1261 LPRKCVLVLGSEKGGITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALYEWWR 1314


>gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 257

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +    E ++  +A++ G E  GL  +  +       +       +LN++
Sbjct: 101 PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 160

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 161 MAVQIISYEIR 171


>gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 190

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++     + +      +L
Sbjct: 25  IVLYEPLIPANTGNISRTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWDAVDITYHKSL 84

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D L  +       +   ++          N +   + G E  GL     +E       +
Sbjct: 85  ADFLTYLGERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPEDFMRENVEKCIRI 144

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN  A+ LY     
Sbjct: 145 PMNDEHVRSLNLSNTVALVLYEALRQ 170


>gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
 gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
          Length = 243

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            N  +AL+ G E  GL  +  +      ++       +LNV+ A     Y  +
Sbjct: 106 LNKTVALVFGRERTGLTNEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIR 158


>gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925]
 gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum
           BKT015925]
          Length = 160

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G I R+ V  +    +        +   + ++      H+
Sbjct: 1   MANTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFSIDDKSVKRAGLDYWPHL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                 +  D ++K        +  +  +K   ++    +   ++ G E  GL    + +
Sbjct: 61  KLEIHESFDDMIRKY-PDANIYLSTTKGAKYHHDEVNYKEGDFIVFGRESSGLPDYIRDK 119

Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280
              +   + M     ++LN+SN  ++  Y      
Sbjct: 120 YVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQL 154


>gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 186

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYI 275
            P  +       A + G E +GL  +            L M    ++LN+SN  AV +Y 
Sbjct: 110 HPFNEVRYQPGDAFLFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYE 169

Query: 276 TQNH 279
               
Sbjct: 170 AWRQ 173


>gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
 gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
          Length = 154

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA-T-SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 L+ G E  GL  +  ++        + M    +++N+SNA AV ++      
Sbjct: 91  YRADDVLLFGRETSGLPAEVLDSVPDMQTLRIPMCPANRSVNLSNAVAVVVFEAWRQL 148


>gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
 gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
          Length = 244

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      Q  ++  +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRAVQAGEHAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYELR 157


>gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 240

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +       + L  E+    +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRGCGEKLVSEVPKYPVALVFGRENNGLSNDELQQCHFHVCIPANPEYSSLNLAA 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLCYEIR 157


>gi|330801499|ref|XP_003288764.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
 gi|325081198|gb|EGC34723.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
          Length = 1628

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +K  L+LG E +G+  +          +   G+I++LNV  + ++ ++     
Sbjct: 1568 FDFPEKSVLVLGKEKEGIPTEFINLLDKCIEIPQLGVIRSLNVHVSGSILMWEYTKQ 1624


>gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
 gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
          Length = 240

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +IAL+ G E  GL         ++  +       ++N+  A AV LY    
Sbjct: 111 GRIALVFGQEKHGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFAR 162


>gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
 gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 241

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
 gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
          Length = 257

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
 gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
          Length = 154

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R     +C   +            L ++    ++H  ++  
Sbjct: 1   MFNIVLYEPEIPPNTGNIIRLCSNSNCKLHLVKPLGFELSEKTLRRAGLDYIKHELFVIY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N +D L K  +     I      K              + G E +GL    +       
Sbjct: 61  ENYSDFLSKNKNINLFGISTKG--KNYYHSVSFKPDDFFMFGPETRGLPDAIRNQIEPNH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M    +++N++N  ++ LY     
Sbjct: 119 LLRVPMAENSRSINLANTVSIILYEAWRQ 147


>gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 154

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +S+ + ++      H      
Sbjct: 1   MFTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDY--HEFASLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +   A       G +   L++      +Q         + G E +GL  +  ++  A  
Sbjct: 59  VHENFADCLSALSGRRIFALTTKGSTRPDQVSFRPGDVFLFGPETRGLPAEILDSLPAGQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV ++     
Sbjct: 119 KIRLPMKAGSRSMNLSNTVAVVVFEAWRQ 147


>gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146]
 gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 245

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +    E ++  +A++ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146

Query: 267 NAAAVALYITQ-----NHFAK 282
            A  +  Y  +        AK
Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167


>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A+I G E  GL  +  E    + ++       +LN++ A  V  Y  +
Sbjct: 114 AVIFGNERFGLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEAR 161


>gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
 gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
          Length = 236

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +AL+ G E  GL  +  +    +  +   G   +LN++ A  V LY    
Sbjct: 104 RDVALVFGRERTGLTSEEVQACDLILTIPSSGACPSLNLAQAVMVVLYELMR 155


>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
          Length = 449

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 4/136 (2%)

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            +  +           T        +          +   +    +  DA        + 
Sbjct: 306 HVADNHSTTMAKHNDNTTPQKHRRPSDYGWVKGHQYQSKAHDDDDDDDDANDLCSLEDYC 365

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264
                S   +    +      +LI+G E  GL  +  + A         + M   + +LN
Sbjct: 366 DKNSKSLETQLYYTDWVAGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLN 425

Query: 265 VSNAAAVALYITQNHF 280
            + AA V L+  +   
Sbjct: 426 SAIAAGVLLFEGRKQL 441



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 4/202 (1%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 99  KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKI-VGKEAVHQGLALETA 119
           +  +       ++ +AL  L  D         VK    Q   ++   +E +      E +
Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSELDTSQEIIAIFKRPEAS 216

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            L        R   L ++ D V DP N+G++LRSA A  C  ++ TK         + ++
Sbjct: 217 RLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRA 276

Query: 180 ASGALEHIPYIRISNLTDALQK 201
           A GA   +P I     TD    
Sbjct: 277 AMGAHFRLPIIPNLTWTDISNH 298


>gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 178

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 5/155 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   +L +VL H     N GAI R+ V       +            L ++      H+ 
Sbjct: 1   MATDRLNIVLVHPEIAPNTGAIGRTCVGVGATLWLVRPMGFQINDRHLKRAGLDYWAHLD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR---PKTQ 245
           +  + NL + +++      +    S+   +P          ALI G+E +GL        
Sbjct: 61  WRIVENLEEIVERFG--WDRLWFFSARGGRPYASLNYQPGDALIFGSESRGLPLEWRARA 118

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M    + LN+SNA AVA +     F
Sbjct: 119 EAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQF 153


>gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1]
          Length = 158

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       +        L+ G E +G+     +      
Sbjct: 59  KHKTFEAFLESEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTIYEAWRQL 148


>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
           Langeland]
 gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. Langeland]
 gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. 230613]
          Length = 155

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    +        +   L ++     +++    
Sbjct: 1   MSLNIVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-- 249
             +  +  +K     F                  +D   ++ G E  GL  + ++ +   
Sbjct: 61  YESYEELREKYKDSNFYFSTTHG--NNFYTDVKYSDGDFIVFGRESSGLPDEIKD-SDPS 117

Query: 250 SMAHLHMPGII-KALNVSNAAAVALYITQNH 279
               + M     ++LN+SN  AV  Y     
Sbjct: 118 KCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162]
 gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM
           2162]
          Length = 236

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +   +A++ G E  GL  +    A  +  +        LNVS A AV L+    H 
Sbjct: 100 FPRTRSVAILFGRESTGLTREEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHR 157


>gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
 gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
          Length = 178

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 2/145 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD++   HN+G++ R+A AF  + +      +      + K+A GA E + +    +
Sbjct: 26  VLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGATESVAWEYAGD 85

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
               L ++ +         ++        +     + A +LG E KG+     +    + 
Sbjct: 86  TLQVLDRLETTHECWALEQAEGAVSLGEFRPEPGKRYAFVLGHEVKGVSQAVIDRCRGVV 145

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
            +   G   +LN+S AA V L+   
Sbjct: 146 EIPQLGTKHSLNISVAAGVLLWDFY 170


>gi|330465613|ref|YP_004403356.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808584|gb|AEB42756.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 207

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R   +    +       + H   
Sbjct: 55  RRHDFHVAIENWQHDMNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHES 114

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I           +   G   +  S   +          +  L+ G EG GL    +    
Sbjct: 115 IDDFVAWAGQHDLPLVGIDNLPGSRPLESST----LPRRCVLLFGQEGPGLSDAARAACD 170

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  +++N   A+ +A++    
Sbjct: 171 QLFSIAQYGSTRSINAGVASGIAMHAWIR 199


>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 354

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM--------PGIIKALNVSNAAAVALYIT 276
              L+LG EG G+R    +       +             I +LNVS AA + L+  
Sbjct: 294 PTILVLGNEGHGMRTLVSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLHEL 350


>gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60]
          Length = 245

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +    E ++  +A++ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146

Query: 267 NAAAVALYITQ-----NHFAK 282
            A  +  Y  +        AK
Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167


>gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 364

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL LG E  G+         ++  + M G   +LNV++ A V +Y     
Sbjct: 307 VALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQ 357


>gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 153

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAAAVALYITQ 277
                     A + G E  G+  + + +     +  + M    + LN+SN+ AV  Y   
Sbjct: 88  YTNVSYRKGDAFLFGNETSGVPLEIKNSWDQERILKIPMEDSSRCLNLSNSVAVISYEAM 147

Query: 278 NHFA 281
               
Sbjct: 148 RQIK 151


>gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
 gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
          Length = 228

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L   +K++KIALI G E  GL  +    A  +  +        LN+S+A  + LY 
Sbjct: 91  FPWELPSVMKSEKIALIFGRESVGLTREEISKADFLLFIPANPNYPTLNLSHAVGIVLYE 150

Query: 276 TQN 278
              
Sbjct: 151 IWK 153


>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum]
          Length = 334

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 80/231 (34%), Gaps = 23/231 (9%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQ 99
             +YG + V  AL    R I++L A  + L R   D  +              +K +   
Sbjct: 77  EIVYGTYPVLEALKANRRSIYKLFAKASVLGRAKQDDIIAKKILRLANDSGVDIKALNAD 136

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157
            +D +   + +H GL ++ +PL    L         + + LD V DP NIGAI+RS   F
Sbjct: 137 QLDVLTEYQ-LHNGLCIDASPLSYEVLCDEDIVNAKIFLYLDKVLDPGNIGAIIRSCFYF 195

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL----- 212
             DG+I  +   P         AS        +       + +K                
Sbjct: 196 RIDGVILARDQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRKRLRNVGFKFIATSDEN 255

Query: 213 ------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                      +  +    NDK+ +ILG EG+G+          +  +   
Sbjct: 256 SAITKGYQSPIRLPDFRPINDKVVIILGDEGRGIATDILSQCDYIVQIPTS 306


>gi|281211833|gb|EFA85995.1| TAR RNA loop binding protein [Polysphondylium pallidum PN500]
          Length = 1614

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 2/168 (1%)

Query: 114  LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               +        + A    QL++V   V+   N+  + R++  F+ + ++ +K+   ++ 
Sbjct: 1441 PWNDVEDETRYNIMARTRQQLIIVATFVDKIPNLAGLARTSEIFNVESLVVSKKKVANDP 1500

Query: 174  AVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
                 S S                   L K            + +   L +    +K  L
Sbjct: 1501 MFQQISVSAERWLPMTEVEEHQLREYLLSKKQEGYTLLGVEQTSTSSQLNEYKFPEKAVL 1560

Query: 232  ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +LG E +G+  +          +   GII++LNV  + ++ ++     
Sbjct: 1561 LLGKEKEGIPTEYINLLDKCIEIPQLGIIRSLNVHVSGSILMWEYTKQ 1608


>gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 152

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N+GA +R +  F     +      P +   L ++A          R  + 
Sbjct: 3   IALFQPGIPQNVGAAIRLSACFGVGLDVIEPCSFPLDDKSLKRAALDYGPLAHLKRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+       + +  ++    P  +        L+ G E +G   +          + 
Sbjct: 63  GAFLKAPERVDGRLLLFTTRGATPFHRFEFAPGDTLLFGNESRGAPEEVHAAVHGRIIIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    +++N++  AA+AL      
Sbjct: 123 IRPETRSMNLATTAAMALGEALRQ 146


>gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 154

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+         +        +   L +S     + +     
Sbjct: 1   MLHVVLFQPEIPQNTGNIGRTCAITESRLHLIHPLGFVIKDKHLKRSGMDYWKSLDVHHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +               +  +    +P       +   L+ G EG G      +      
Sbjct: 61  ESWEAFKASDVGPKRLFLFTTKS-SQPYWDVQYEEGDGLLFGNEGHGAPDWLHDEVGEDR 119

Query: 251 MAHLHMPGII-KALNVSNAAAVALYITQNHF 280
             ++       ++LN++ AA VA +      
Sbjct: 120 RLNIPQYNSSLRSLNLATAAGVATFEVMRQL 150


>gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
          Length = 156

 Score = 69.9 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII 260
            +    +    ++ S KP  Q        L  G+E KGL  +  E        + M    
Sbjct: 68  HNCNLSRAFFATTKSSKPYFQVQYQPGDFLFFGSETKGLPMELMEKHWEHAVTIPMTKEG 127

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LN++ +  V +Y       K
Sbjct: 128 RSLNLAVSVGVIVYEGIRQNFK 149


>gi|29027480|gb|AAO61955.1| rRNA methylase [Aster yellows phytoplasma]
          Length = 78

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYI 275
                     +  A ILG+E KG+         +   L  +   + +LNVS A    LY 
Sbjct: 11  DYICYNINYRNPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYE 70

Query: 276 TQNHF 280
                
Sbjct: 71  AIRQR 75


>gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus
           succinogenes 130Z]
          Length = 158

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       +        L+ G E +G+     +      
Sbjct: 59  RHKTFERFIESEKPKRLFALTTKGGPAHSEVRFESGDFLMFGPETRGIPMSILDNMPMER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AVA+Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVAVYEAWRQL 148


>gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC
           35896]
          Length = 156

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL     P N G I+R+         +        E   L ++    L+ +    
Sbjct: 1   MAINIVLIEPEIPSNTGNIIRTCACTGSRLHLIRPLGFSMEEKKLRRAGLDYLDLVEICY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +  +  +K  +  F      S+           D+  L+ G E KG+     +  A  
Sbjct: 61  YDSFEELEEKYPNAEFFMYSTKSNRNHTD--VRYEDECFLVFGKETKGISDSILDRYADC 118

Query: 251 MAHLHMPG--IIKALNVSNAAAVALYITQNHF 280
           M  + M     ++ LN+SN+ A+ +Y      
Sbjct: 119 MVRIPMLNEERMRCLNLSNSVAIGIYEVIRQL 150


>gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 291

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 87/251 (34%), Gaps = 13/251 (5%)

Query: 38  QKSRHTS---QPENLFLYGVHTVSAALNNPSRKI---FQLLATKNALARLDWDANL-PHP 90
            + R      +     + G   V+  L    R       +L        L  D    P P
Sbjct: 20  TRMRERDLVGRAGRFIVEGE--VTLRLLLGRRSRFRAESILLAPERWPGLAADVAACPEP 77

Query: 91  FPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            P+ +     +  + G      V            +  +       L++ L  + +  N+
Sbjct: 78  PPIYSASKAVMSAVTGFPIHRGVLAVGLRGPGLDAAALVPPPPAPALVVGLAGLTNHDNV 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA  R+A AF  D ++              + ++GA    P+ R+ +  D L+   +   
Sbjct: 138 GAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQPFARLPDGQDWLRLAETLDL 197

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +  S  + + L+      +  LILG EG GL   T   A     + M     +LNV+ 
Sbjct: 198 RPLAFSPGASETLDARAAPPRALLILGTEGPGLDAATLARA-RPIRIPMAAGFDSLNVAT 256

Query: 268 AAAVALYITQN 278
           AA +ALY    
Sbjct: 257 AAGIALYTIAR 267


>gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
 gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
          Length = 160

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL     P N G I R+ V  +    +        +   + ++      ++
Sbjct: 1   MSDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFNIDDKSVKRAGLDYWPYL 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                 +  D ++K        +  + ++K   ++    + + ++ G E  GL    ++ 
Sbjct: 61  KLEIHESFDDMIRKY-PDANIYLSTTKEAKYHHDEVNYKEGVFIVFGRESSGLPDYIRDR 119

Query: 247 TATSMAHLHMPGII-KALNVSNAAAVALYITQNHF 280
              +   + M     ++LN+SN  ++  Y      
Sbjct: 120 YIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQL 154


>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 178

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 70/159 (44%), Gaps = 3/159 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + ++++LD+V   +NIG++ RSA AF    I      +      + K+A GA +
Sbjct: 19  FKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATD 78

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRP 242
            + +  + N    ++K+ + G +   +       +  +   +K    A++ G E KG++ 
Sbjct: 79  TVTWEYVENTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGNEVKGVQQ 138

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    + ++  +   G   +LN+S +  V L+   +   
Sbjct: 139 EVVSASDAVIEIPQLGSKHSLNISVSTGVVLWDLFSKLK 177


>gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 154

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R      CD  +      P +S+ + ++      H      
Sbjct: 1   MFTVVLYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDY--HEFSQLT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + +         G +   L++      +Q         + G E +GL      +  +  
Sbjct: 59  VHESWQDCWAALQGKRIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPTDILASLPSEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
                M    +++N+SN  A+ ++     
Sbjct: 119 KIRFPMMPDNRSMNLSNTVAITVFEAWRQ 147


>gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 149

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G             T    +           S   K    +   + +  LI G E  GL 
Sbjct: 47  GMDYWKHLDFTFYPTFEEARAVFDQNDIFLFSPSGKNIYTKGRYSKESILIFGKESMGLD 106

Query: 242 PKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQNHF 280
               +      + + M    ++LN++N+ A+ LY      
Sbjct: 107 KNILQEFEEKTYFIPMKKEARSLNLANSVAIVLYEALRQI 146


>gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
 gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
          Length = 218

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 1/154 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L  VL+ +  P N  A +R+        +    + +   +     +   +     
Sbjct: 30  CRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRNKC-TLNPDVTLGSSQWINL 88

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +      +              +    LE    N+K+A+  G E  GL  +  E A
Sbjct: 89  NRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEAA 148

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G  ++ N+S A A+ +Y       K
Sbjct: 149 DLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 249

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  + L    K   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 89  WPMVEPRECGQMLVDGAKKGPVALVFGRENSGLSNEELQMCHYHVCIPANPEYSSLNLAM 148

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 149 AVQTLTYEVR 158


>gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           GB-1]
          Length = 251

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48]
 gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1
           [Pseudomonas entomophila L48]
          Length = 251

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           KT2440]
          Length = 251

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 176

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               +     +++LD++   +N+G++ R+A AF  + I      S    A + K+A GA 
Sbjct: 17  EFKEIDKVPFIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAE 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLR 241
           E + +  I +    + ++   G+    +       +  E    KN KIA+++G E KG++
Sbjct: 77  ESVDWEYIEDTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +    +     +   G   ++NVS    + ++   N   
Sbjct: 137 QEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLFNKII 176


>gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           enterocolitica W22703]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
 gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
 gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
          Length = 151

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PK 243
                  I   +     + +     + LSS  K         + + L+ G E  GL  P 
Sbjct: 52  YWQHLEVIYYNSIDDFFLKNKDSIMVFLSSQGKVSHWDINYTENMFLVFGKESVGLPKPL 111

Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
            ++    +  + +    I++LN++NA ++ +Y      
Sbjct: 112 IEKHKDQLFKIPLYSKDIRSLNLANAVSIIVYEGLRQL 149


>gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
 gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
          Length = 256

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
 gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua]
 gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516]
 gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F]
 gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1]
 gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92]
 gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516]
 gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua]
 gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92]
 gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F]
 gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis
           Angola]
 gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004]
 gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038]
 gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 133

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPK--TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                      AL+ G E  GL  +       T+   + M    +++N+SN+AAVA Y  
Sbjct: 64  WFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEA 123

Query: 277 QNHF 280
               
Sbjct: 124 WRQL 127


>gi|290988988|ref|XP_002677151.1| predicted protein [Naegleria gruberi]
 gi|284090757|gb|EFC44407.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 20/292 (6%)

Query: 3   LISKKKSEKIFSLKD--SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +IS K +  I       + Y+K  +    + + Q F  +     +   + + G   +  A
Sbjct: 12  IISSKVNPIIKECIKIRTKYSKNFKKCFTFDQPQVFKGEEGIQYKSLPMLMNGSKIIREA 71

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETA 119
             +   KI       ++           +           I+ I G    + G   +   
Sbjct: 72  --SEKYKIEPKWLFYSS--EQSEIKFKSNDIQYYQTNDNLINHICGDIVSNDGYCAVYDN 127

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                  +  +   + +    V+DP+N+G+I+R +  F    I  ++      +    +S
Sbjct: 128 YNPFKLFENKKKRNVYIYCYKVSDPNNLGSIIRMSFGFDIKAIFLSEDCVSPFTERSIRS 187

Query: 180 ASGAL-----EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           +   +      H+P      +     K              +      +     + LI+G
Sbjct: 188 SRNYILNIPVFHLPLKDYKTIIYDQLKCKKSLIADASTDRKTPIQNLNDSNEGDVCLIIG 247

Query: 235 AEGKGLRPK--------TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  G              E      ++ M   + +++VS+AA++ ++    
Sbjct: 248 NEHHGFCDDDFKSILLPQLENQYEGIYIPMKNNLDSISVSHAASILMFELTK 299


>gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7425]
          Length = 262

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     ALI G E +GL       A  +  +    I  +LN++ A AV  Y     
Sbjct: 109 PWLLGHPAALIFGREDRGLTNTELNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQ 166


>gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 261

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            V   L +    +      K      +   +         V  Q+I +      VHQG  
Sbjct: 36  AVR-LLLSNFEVVSVFCTEKYWQKHKNLIDSKLKDEEKCYVADQSIFEETIGFHVHQGFM 94

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                  +   D    +  +++++ + D  NIG+ILR+A AF    I+   + +      
Sbjct: 95  AVGKQKWAKEED---LTFPILIINAIVDSENIGSILRNAAAFGIKSILFDSKSASPYLRR 151

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQ--------TIGLSSDSKKPLEQEIKND 227
             + + GA+  +   + +NL D++Q++                       K +++  K +
Sbjct: 152 SVRVSMGAIFQLQLAKTTNLPDSIQRLKERPTNLVALALPKENSHHLSKTKTIQEIGKLE 211

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + LI+G E  G+     + +  + ++ M   I +LNVS+A AVAL   
Sbjct: 212 NLVLIVGNEANGIEEGVLDASDVIGYIPMQNNIDSLNVSHALAVALSHL 260


>gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 168

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 L+ G E  GL P   +    T    L M    ++LN++NAA++A Y      
Sbjct: 105 YQPGDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRSLNLTNAASIATYEAWRQL 162


>gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
 gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
          Length = 155

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G+I R          I        +   + ++     + +  +  
Sbjct: 1   MFHIVLVEPRIPQNTGSIGRMCFNAGFTLHIINP-LFSIDEKAVKRAGLDYWKKLNPMLW 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
           +NL D L+K   +  +    ++ + +        +   L  G+E  GL  +  +    + 
Sbjct: 60  NNLEDFLKKYEKFQDRFFFATTKTTQAYFDVKFQEGDFLFFGSESFGLPEQLMQKNWKNA 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 120 ITIPMKDCGRSLNLATSVGIVSYEALRQ 147


>gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 181

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               V+ + +++VLD+V   +N+G+  R+  AF  + I      +      + K+A GA 
Sbjct: 16  EFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLR 241
           E + +    N  DA+ K+   G++ + +         ++       K A I G E  G+ 
Sbjct: 76  ETVEWEHFENTLDAVAKLKQDGYKIMSVEQAENSLSLEKFAPKADEKYAFIFGNEVYGVE 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + +     +   G   +LN+S +  V L+ 
Sbjct: 136 QEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLWH 169


>gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
 gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
          Length = 159

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P N G I+R          +        +   L ++     E       
Sbjct: 1   MFHIALYQPEIPPNTGNIIRLCANTGFQLHLIHPLGFELDDKRLRRAGLDYHEFASVREH 60

Query: 193 SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA- 248
            +     +     G     L    +  ++        +    + G E +GL     +   
Sbjct: 61  ESWEAFCRDFVQGGDANHRLFALSTRGRQRYSDVAFREGDVFLFGPETRGLPQDILDDLP 120

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L M    ++LN+SN  AV  Y     
Sbjct: 121 EAQRLRLPMRASGRSLNLSNTVAVLGYEAWRQ 152


>gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
 gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 152

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQ 277
                    K   + G+E KGL  +         + + M    ++LN++    + LY   
Sbjct: 84  YYAHASLPLKGTFVFGSESKGLPQEVLNAYHEQCYFVPMLQGTRSLNLATTVGIVLYEVI 143

Query: 278 NH 279
             
Sbjct: 144 RQ 145


>gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 157

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR A        I            L ++    +      R  + 
Sbjct: 10  IALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSW 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               +   + G + +  S+ +  P  +        L+ G E  G+     E A     + 
Sbjct: 70  DRFEEWRATTGRRLVLASTKAALPYTKIAYRHDDILLFGRESAGVPDHVHEKAQERIIIP 129

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M    +++NV+ +AA+        
Sbjct: 130 MVEGQRSINVAMSAAMITGEALRQ 153


>gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 177

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 6/156 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +    +++VLD++   HN+GA+ R+A AF  + +      +      + K+A GA E 
Sbjct: 18  KNIEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGATES 77

Query: 187 IPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + +    N  + ++K+    +       + +    P  +   + K A+++G E  G++ +
Sbjct: 78  VDWEYEENALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIVMGNEVDGVQQE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL---YIT 276
             +       +   G   +LNVS    + L   Y  
Sbjct: 138 IIDKTDVCLEIPQSGTKHSLNVSVCTGIVLWKWYEA 173


>gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM]
 gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 176

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T      + L++VLD++   HN+GA+ R+A AF  + I+            + K+A GA 
Sbjct: 17  TFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGAT 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241
           E + ++   ++++A++++ + G+  IG+   +        +   N K AL+LG E +GL 
Sbjct: 77  ESVDWVYQKDISEAIKELKTQGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNEVEGLS 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      +   +   G   +LNVS    + ++
Sbjct: 137 DEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIW 169


>gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 175

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL+LG E  G+          + ++ M G   ++NVS AAA+A Y   N+
Sbjct: 118 KKIALVLGHERYGICEDVLNILDHITYIPMRGKNSSMNVSQAAAIAAYQLINN 170


>gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 267

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +AL+ G E  GL  +  +   +  H+       +LN++ A  V  Y  +
Sbjct: 121 GPVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELR 171


>gi|241690481|ref|XP_002411769.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215504608|gb|EEC14102.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 227

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T---SMAHLHMPGIIKAL 263
               +                  L++G E +GL  +  + A     S  H+     +++L
Sbjct: 133 CRQVVLPCHDYTAVTYPARRPSVLVVGGEAQGLSTQAHKLAVDCGGSRVHVPSDNEVESL 192

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 193 NTAVAASIILFEMRRQI 209


>gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 155

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V  +    +        +  +L +S     + +  +  
Sbjct: 1   MLNIVLLEPEKPSNTGNIGRTCVLTNSRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            ++ D   +      +   + + +     +    D    + G E  G+      +     
Sbjct: 61  DDM-DEFLEYIKGNDRVFYVETFATNYYHELEYQDGDFFVFGKESSGIDKDLVDKHKDHS 119

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNHF 280
             + M   I  +LN++N+  + L+      
Sbjct: 120 IKIPMNMTIDRSLNLANSCNIVLFEALRQI 149


>gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 156

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            SQL +V D+   P N G  +R+A        +        +   L ++      H    
Sbjct: 1   MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
              +           G +    ++ + K        +   L+ G E  GL  +       
Sbjct: 59  VQIHKDFQACMDALPGARVFAFTTHTDKWFTDIEYQEGDVLLFGTEPTGLPEEHINHPRV 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T    + M    +++N+SN+A+ A++      
Sbjct: 119 TDRVRIPMVPARRSMNLSNSASTAVFEAWRQL 150


>gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 257

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 2/148 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D+    +  +V+ ++    N+G I+RS VAF+   I    +     +          +  
Sbjct: 46  DSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEINFFGNMGTYDYI-T 104

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I Y             H        +S ++        ++   A + G EG G+     +
Sbjct: 105 IEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLK 164

Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVAL 273
               + ++   G    +LNVS + A+ L
Sbjct: 165 ICDKIIYIPQYGKGTASLNVSVSCAIIL 192


>gi|326384122|ref|ZP_08205805.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197282|gb|EGD54473.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 231

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
              +  L+ G EG G+  +TQ+ A     +   G  +++N   AA + ++     H
Sbjct: 169 LPRRALLVFGQEGPGVSDETQDRADLTVSIAQFGSTRSINAGVAAGIVMHSWIARH 224


>gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
 gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 249

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 25/71 (35%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE +   +A++ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRSIQEAQRAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILSYEVR 157


>gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 259

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K    AL+ G+E  GL  +  E   ++ ++       +LN++ A  V  Y  +
Sbjct: 116 KKKPCALVFGSERYGLPNEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECR 168


>gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 242

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
              K  L+ G+E  GL  +       +  +   G  +++NV +AAA+ ++     
Sbjct: 182 LPAKACLVFGSEALGLSEEMLAACDVVVAVTQRGSTRSMNVGHAAAIVMWAHATR 236


>gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493]
          Length = 240

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              L +  +   +       IA++ G E  GL  +          +       +LN++ A
Sbjct: 87  PWPLKTPRECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146

Query: 269 AAVALYITQ 277
             +  Y  +
Sbjct: 147 VQILTYEIR 155


>gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
 gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
          Length = 218

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           N+K+A+  G E  GL  +  E A     + M G  ++ N+S A A+ +Y       K
Sbjct: 126 NNKMAVFFGTELTGLSAEAFEAADLYLKIPMYGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
           [Meleagris gallopavo]
          Length = 375

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273
           +   +       A+++G E  GL P     A         + +   + +LN + AAA+ L
Sbjct: 291 QYYYENWMRSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVL 350

Query: 274 YITQNHFAK 282
           +  +    +
Sbjct: 351 FEGKRQLQR 359



 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 2/176 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K     R   K+ +  +      +   + L G   +  AL   +     L  +     
Sbjct: 42  YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGQRLIRDALEAGAVP-RALFFSTALHL 100

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           R    A L     +  V  + I       A    + + + P  +          L+++ D
Sbjct: 101 RELPSAPL-KGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPAAQLPLVLICD 159

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ DP N+G ILRSA    C+ ++ TK         + ++  GA   +P +   + 
Sbjct: 160 NIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVANLDW 215


>gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 169

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +  +    ++   L ++       +      +L
Sbjct: 6   IVLFEPQIPANTGNIARTCAATNSPLHLVGQLGFSTDDKHLKRAGLDYWNDVDITYHDSL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
              ++ + +     I   ++         K+++   I G E  GL  +  +E   S   L
Sbjct: 66  EAFMEYLGNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGLPEEFMREHEESCLRL 125

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LN+SN AA+ +Y     
Sbjct: 126 PMNDTHVRSLNLSNTAAIVVYEALRQ 151


>gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 174

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L+++LD++   +NIG++ R+A AF  + I      +      + K+A GA 
Sbjct: 16  DFKQADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
           E++ +    N  + +QK+H        +    K       +  K    A ILG E +G+ 
Sbjct: 76  ENVAWEYAENTLEVVQKLHKENVSVWAIEQTEKAIFLDSFQPKKNTRHAFILGNEVRGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +       +   G   +LN+S A  V ++
Sbjct: 136 QEAVDACGQALEIPQFGTKHSLNISVATGVVVW 168


>gi|326329782|ref|ZP_08196102.1| TsnR [Nocardioidaceae bacterium Broad-1]
 gi|325952368|gb|EGD44388.1| TsnR [Nocardioidaceae bacterium Broad-1]
          Length = 172

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 44/147 (29%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L++    V    N+G +LR+  A      +   ++      +            
Sbjct: 20  HSCWDHLVVAPLWVAYEANLGTLLRTCDAIGACLAVPRTKHYLDALQIGDTLRGRRPCIH 79

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                     A Q+        + L+  +          +   L+LG E +G+       
Sbjct: 80  WVTPSKEGWIAAQREAGKRIVAVELADGATPLTRLAPAREPTVLLLGHEHQGVPDDVLAE 139

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + M G   +LNV+ A ++  Y
Sbjct: 140 VEECVEIPMVGWGASLNVAVAGSLVAY 166


>gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 158

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       +        L+ G E +G+      T     
Sbjct: 59  KHKTFEAFLQSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIPMSILNTMPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
 gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
          Length = 254

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +       +       N ++AL+LG E  GL            ++       +LNV+
Sbjct: 96  PWPLVHPRQMAEQALALPDNTRVALVLGRERSGLTNDELARCHCHVNIPANPDYSSLNVA 155

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 156 AAVQVLCYELR 166


>gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
 gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
          Length = 154

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L     P N G I+R      CD  +      P +S+ + ++      H     +
Sbjct: 1   MFTIILYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDY--HEFANIV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +       +   G +   L++  K   ++         + GAE +GL  +   +     
Sbjct: 59  VHENWDNCMVALAGRRIFALTTKGKTRPDKVAFLPHDVFLFGAETRGLPAEILASLPDNQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                M    +++N+SN  A+ ++       
Sbjct: 119 KIRFPMMPDNRSMNLSNTVAITVFEAWRQQN 149


>gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 181

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+I+G E KG++    + + +   +   G   +LNVS  A + ++    
Sbjct: 126 AIIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWEFAK 174


>gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
 gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
          Length = 274

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEA 109
           G   V   L    + +  +L  +                     + VP   +D++     
Sbjct: 34  GRKPVRELLAERPKSVDDVLLRQGLRGPDIDAIVASCREAGVRFRFVPTGDLDRL--YPG 91

Query: 110 VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+          +LD            + + LD V DP N+GA+ R+  A    GII
Sbjct: 92  NHQGVLARLIAGELASLDDVLEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGII 151

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +          AK+++G L  +P  +++NL+ AL++    GF  +G + +        
Sbjct: 152 LPRHEGARLGPGAAKASAGTLSRLPVAKVANLSRALEEAAEAGFAVVGAAGEDGAENALA 211

Query: 224 IKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + +  + L+LG E +G+R   ++   ++  +     + +LNV+ A A+ L
Sbjct: 212 ARPEFPLVLVLGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262


>gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 248

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE ++  +A++ G E  GL  +  +       +       +LN++
Sbjct: 87  PWPMLEPRECGVLSIQEAQHAPVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILSYEVR 157


>gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii
           yoelii]
          Length = 777

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 1/154 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALE 185
              + + L+++   ++   N+  + R+   F+   ++ +              S +    
Sbjct: 622 QFRKKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQFQKISSTANKWM 681

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +I  ++ +++   L K            ++  K L   I  +   LILG E +GL     
Sbjct: 682 NIQELKKNDIIKYLIKKKKKYSIIGLEQTNDSKQLNDFIFPENCILILGDEKEGLPSSIL 741

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +   GII++LNV  +AA+ +Y     
Sbjct: 742 LLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 775


>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
 gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
          Length = 178

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               +    + +VLD+V    N+GA  R+A AF+ + I      +   +  + K+A GA 
Sbjct: 16  EFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLR 241
             + +   +  TD +  + + G+    +       +  E +       AL+ G E  G+ 
Sbjct: 76  LTVAWDYFAATTDCIAALRAQGYLIYVVEQVEGAVMLDEFRPRPGQKYALVFGNEVDGVA 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  + A     +   G   ++NVS A  V L+
Sbjct: 136 QEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLW 168


>gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris]
          Length = 167

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60

Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +          +        G +   L++            D   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158


>gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris]
          Length = 166

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60

Query: 193 SNLT--------DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +          +        G +   L++            D   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158


>gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
 gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
          Length = 153

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G + R      C+  +        +   L ++       +     
Sbjct: 1   MFHIVLVEPEIPPNTGNVARLCAGTGCELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N    L+K        +                     + G E KGL  +         
Sbjct: 61  DNWAAFLEKHGQANLLLLSTKGKKAYHE--FAYRPGDFFVFGKETKGLSEEILSEWPERV 118

Query: 253 -HLHMPGIIKALNVSNAAAVALYITQNH 279
             + +    ++LN+SNA AV ++     
Sbjct: 119 ARIPLVADARSLNLSNAVAVVVFEGLRQ 146


>gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 206

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 9/170 (5%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                     +   L +VL     P N G+I R+  A      +        + + L  +
Sbjct: 11  NWEDVAQKDQQQKLLQVVLVSPQIPGNSGSIARTCAATGVGLHLVEPLGYKIDGSKLKST 70

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237
                 ++      +  D          +      + + +             L+ G+E 
Sbjct: 71  GLEYWPYVVVKVHKSWNDFFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEV 130

Query: 238 KGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
            GL     E +T+         L M    +++LN+S +A + +Y      
Sbjct: 131 DGLPAAALEQSTTGQYAGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQL 180


>gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 153

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G ++R A        +        +   L ++      H      
Sbjct: 1   MFHIVLVEPEIPPNTGNVIRLAANTGAHLHLVHPLGFRLDDTRLRRAGLDY--HEWARVA 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            + +           +   LS+       Q       AL+ G E  GLR +    +    
Sbjct: 59  EHPSLVDCLRQVRPRRAWALSTHGSVGYHQVRYAPGDALVFGCETGGLRRELTRFSPGRR 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+ N+ +V LY     
Sbjct: 119 LRLPMRPESRSMNLGNSVSVVLYEALRQ 146


>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
 gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
          Length = 787

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             I L+LG+E KG+     + +T    +   G+I++LNVS A+++ L     
Sbjct: 636 KPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQASSIILGECWR 687


>gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC
            50581]
          Length = 1676

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%)

Query: 176  LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            ++ +A   L+         +    +K            S     L+      K  L+LG 
Sbjct: 1560 MSMTADMWLKIEEVQPHRLIQWIAEKKKDGYSIVCLEQSSRSVYLQDAELPQKAVLVLGN 1619

Query: 236  EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  G   +          +   G  ++LNV  + A+ ++
Sbjct: 1620 ERNGCPEEILSLCDMTVEIQQIGNTRSLNVHVSCAIFIW 1658


>gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-K 243
                              +   + + LSS   K        D + L+ G E KGL    
Sbjct: 52  YWQHLNLHYYDNIEDFLEKNKTKKMVFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPKSL 111

Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           T +    +  + +    I++LN++NA ++ +Y       
Sbjct: 112 TSKHQDKLFKIPLYSEHIRSLNLANAVSIVVYEGLKQIN 150


>gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4]
 gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4]
          Length = 169

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               + L     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETAT 249
             NL   ++   +     I                +     + G E  GL  +  +E   
Sbjct: 61  HKNLAAFMEVAQNGQLHLITKFGHRVYSDVDYATTEGDHYFLFGKETTGLPEEFMREHEE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
               + M    +++LN+SN AA+ +Y     
Sbjct: 121 DCLRIPMNDEHVRSLNLSNTAAILIYEALRQ 151


>gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 176

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           N   A +LG E  G+  +  + A  +  +   G   +LN++  A +  +    
Sbjct: 122 NKPYAFVLGNEVTGVCDEVIQAADLVLEIPQFGTKHSLNIAVTAGIICWDFLQ 174


>gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
 gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
          Length = 242

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 11/235 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            G  +  A L   SR   +L   K       R            V     + I+++    
Sbjct: 6   EGAISCKALLEAGSRNCKKLYIDKKKNTKDTRYLAKIAKSRGCEVVFCSREEINELAT-G 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             H G+ L       P L        L  +D V DP+N+G+I R+  A  CD +I  KR 
Sbjct: 65  KTHGGVLLIAEEKQIPQLIETYVHGFLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRD 124

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + K+++GA E +P   +    + +          +         L        
Sbjct: 125 WSFAEQTILKASAGAYEKLPIYFVDADEELVNYCKKNNLPILCAHRKDAVGLYDYTFESD 184

Query: 229 IALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALYITQNH 279
             L LG   +GL       +     +         + +   ++AAAV  +     
Sbjct: 185 FCLCLGGALRGLSSTITAASKQNIVVEYGRDFRNALDS---ASAAAVFSFEILRQ 236


>gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 239

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A + G E +GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 107 TAFVFGREDRGLTNEELQRCHYHVHIPSVEAFSSLNLATAVQVIAYELR 155


>gi|209880764|ref|XP_002141821.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
            RN66]
 gi|209557427|gb|EEA07472.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
            RN66]
          Length = 1629

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 2/163 (1%)

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +        + S L+++   ++   N+  + R+   F    ++   R   ++      S 
Sbjct: 1464 MKRENYKKNKRSDLIVIGTLIDKIPNLAGLTRTCEVFKVGKLLLKTRKVLNDPIFRQISV 1523

Query: 181  SGALE--HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            +             +                    + S   L   I   K  LILG E +
Sbjct: 1524 TAEKWLPIDELRESNICKYIHSMRLQGYIIIAVEQTASSILLPDFIFPKKSILILGKEKE 1583

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            G+             +   G+I++LNV  +A++ +Y   N   
Sbjct: 1584 GIPCDIISMVDKCLEIPQYGLIRSLNVHVSASICIYAYSNQHN 1626


>gi|290994023|ref|XP_002679632.1| predicted protein [Naegleria gruberi]
 gi|284093249|gb|EFC46888.1| predicted protein [Naegleria gruberi]
          Length = 209

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 56/155 (36%), Gaps = 2/155 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHI 187
           +   ++++   ++   N+  + R+   FS + +           E   ++ SA   +   
Sbjct: 53  KRQSIIVIASLIDKIPNLAGLARTCEIFSAEKLVLPHMNVVEMEEFKSISVSAEHWIPVE 112

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                       QK            + +   L      ++  + LG E +G+ P+    
Sbjct: 113 ACPPTELAQYLSQKRQEGYTIVGLEQTSTSVMLPDYEFPERCCICLGNEKEGMPPELLSL 172

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +   +   G++++LNV  +A++ +Y     F +
Sbjct: 173 MDTCVEIPQLGVLRSLNVHVSASIMIYRYTEQFLR 207


>gi|300742572|ref|ZP_07072593.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381757|gb|EFJ78319.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 226

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+ G EG GL  +    A     +   G  +++N + AA +A++     
Sbjct: 163 YDLPKNCVLVFGQEGPGLSEEIHAAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRR 219


>gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 153

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N GAI+R       +  +        E   L ++             
Sbjct: 1   MLNLVLFEPEIPNNTGAIIRLCANMGANLRLIKPYGFEMEDKKLRRAGLDY--KELMCVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                              +SS  K            +L+LG E +GL            
Sbjct: 59  EYDNFDDYLEKEKPKNLFVVSSKVKTIYTDVKYQAGDSLLLGPETRGLPQDILNQYKG-I 117

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            L M    ++LN+SN A++  Y      
Sbjct: 118 TLPMQDKSRSLNLSNCASIVAYEAWRQI 145


>gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 257

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 257

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
 gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
          Length = 258

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A++ G E +GL     +      ++      ++LN++ A  +  Y  +  
Sbjct: 109 VAMLFGREDRGLTNDELKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQ 159


>gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 257

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 257

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 153

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G ILR A        I            L ++    L  +   
Sbjct: 1   MTSLRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYLSAVALA 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  N         + G + +  S+ + +        +   L+ G E  G+     ETA  
Sbjct: 61  RHVNWERFETWRAATGRRLVLASTKAAERYTDFAFREDDILLFGRESAGVPDHVHETADG 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N++ + A+        
Sbjct: 121 RILIPMLEGQRSINLAMSVAMISGEALRQ 149


>gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter
           concisus 13826]
          Length = 159

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N GAI R  V  +    I            + ++     + +     
Sbjct: 1   MFNIVLVHPQIPQNTGAIGRMCVNANLKLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            +L + L+   S   +    ++ + +            +  G E  GL  +  +    + 
Sbjct: 61  ESLDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDFIFFGGESTGLPREFMDINFKNA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +A +  Y     
Sbjct: 121 ITIPMGKEGRSLNLAMSAGIIAYEAIRQ 148


>gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava]
          Length = 255

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 257

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 154

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +   L+ G E  GL  +            + M    ++LN++NAA +A+Y   
Sbjct: 86  HSDIAYQEGDVLLFGPEPTGLPEEVARHPRVAERLRIPMLAGRRSLNLANAATLAVYEAW 145

Query: 278 NH 279
             
Sbjct: 146 RQ 147


>gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 119

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + L+LGAEG+GL  +          + MPG +++LNV  A  + +Y+ + 
Sbjct: 71  VCLVLGAEGRGLSAEALGGC-QPVKVPMPGEMESLNVGIAGGILMYVMRK 119


>gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 160

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
 gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
          Length = 276

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                     +      E  + +IAL+ G E  GL  +  E  +++AH+       +LN+
Sbjct: 106 YGPPQWTPRAAAAAAHAEALHGEIALVFGNERTGLSNEDVERCSAIAHIPANPAYSSLNL 165

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 166 AQAVQVLAYELR 177


>gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
 gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
          Length = 167

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 45/158 (28%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60

Query: 193 SNLTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +    L+                    ++            D   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLNPDNAQSPSGARVFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158


>gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
 gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
          Length = 252

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E K+  +A+I G E  GL  +  +      ++       +LN++ 
Sbjct: 98  WPMLAPRECGERCVMEAKHKPVAIIFGRERTGLTNEELQKCDFHLYVPTNPEYGSLNLAM 157

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 158 AVQLVSYEIR 167


>gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund
           17B]
 gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           B str. Eklund 17B]
 gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 153

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V       +        +   + ++     +++    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTDSKLHLIKPLGFDIDEKHVRRAGLDYWKYLDLEI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    ++K  +         +       +        ++ G E  G+     E  T M
Sbjct: 61  HESYEAFMEKYKNERIFLSSTHA--GDYYSEISFQKGDFIMFGRESSGVPESIHEVITGM 118

Query: 252 AHLHM-PGIIKALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  ++  Y     F
Sbjct: 119 -RIPMIQSSTRSLNLSNTVSIVAYEALRQF 147


>gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 165

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           DK+ALI+GAE  G+  +T E   ++AH+ M GI  ++NV+ A  +ALY    
Sbjct: 113 DKVALIIGAENIGITDETLEQCNNIAHITMYGINSSMNVAQATGIALYELTR 164


>gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
          Length = 160

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y      +
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQLS 149


>gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC
           BAA-381]
          Length = 161

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N GAI R  +  +    I        +   + ++     + +     
Sbjct: 1   MFNIVLVHPQIPQNTGAIGRLCINANLKLHIVKPTIFSLDEKSVRRAGLDYWKKLNPTIW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            +L D +        +    ++ SK+            +  G E  GL     +      
Sbjct: 61  DSLDDFMAANGDKISRFWFSTTKSKRLYFTADFKKDDFIFFGGESTGLPMNFMQKNWQNA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ +  +  Y     
Sbjct: 121 ITIPMGNEGRSLNLAMSVGIVAYEAIRQ 148


>gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum]
          Length = 382

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           N+KIA++ G E  G+  + +  +     L M G++++ NVS +  + L
Sbjct: 255 NEKIAIVFGNEHNGVSDEMKSLSDRRIFLPMSGLVESFNVSVSVGMLL 302


>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 184

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K ALI G E KG++ +  + +     +   G   + N+S    + L+  
Sbjct: 124 QKYALIFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQI 173


>gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi]
 gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi]
          Length = 218

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 1/153 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L  VL+ +  P N  A +R+        +    + +   +     +   +      
Sbjct: 31  RTNYLTFVLEDIFQPQNASATIRTGEILGFSDVHIISKRNKC-TLNPDVTLGSSQWINLN 89

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +              +    LE    N+K+A+  G E  GL  +  E A 
Sbjct: 90  RYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEAAD 149

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + M G  ++ N+S A A+ +Y       K
Sbjct: 150 LYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 159

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAHIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T  +        +   L++       +        L+ G E +G+     ++     
Sbjct: 59  KHKTFEVFLESEKPKRLFALTTKGGPAHSEVKFELGDYLMFGPETRGIPMAILDSMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTENSRSMNLSNSVAVTVYEAWRQL 148


>gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1292

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               K  ++LG+E  G+ P+          +   G+ ++LNV  A  +ALY    
Sbjct: 1233 LPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALYEWWR 1286


>gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
 gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
          Length = 166

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + + + +          L++G E +G           +  + + G+  + NV+ A  +A
Sbjct: 96  QTTNSQDIHHFSFVRNTVLVIGNERQGTPDDVLRLLDDVVEIPVYGMPYSFNVATATCMA 155

Query: 273 LYITQNHF 280
           LY     F
Sbjct: 156 LYEFCRQF 163


>gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 181

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 1/155 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +    +++ +     +    +       +   II    +   +  +   SA+      
Sbjct: 1   MNKRKINIVLYEPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                       +  +   F             +    ND + L+ G E  G+      E
Sbjct: 61  CIRYDDWNDFITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   + M    ++LN++N   +A Y     + 
Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQWN 155


>gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 148

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 46/149 (30%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + L   + P N  AI+R    F  +  I        +   L +     L        
Sbjct: 1   MINIALYQPDIPQNTAAIIRICACFDINLEIIKPCGYFFDKKKLDRIYLDYL--DICNLR 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              +           + I L++ S     + +      L+ G E  G+  +   +  +  
Sbjct: 59  FYESYDDFFSKKKDTRLILLTTKSDSNYTKFLYKKNDTLVFGKESAGVPEEIHNSIQNKL 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M    ++ N++++ A+          
Sbjct: 119 TIKMNKKTRSFNIASSVAIVASEALRQIN 147


>gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 244

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL  +  +       +       +LN++ A  +  Y T+
Sbjct: 106 TGPVALVFGRENSGLSNEELQMCHYHVCIPANPEYSSLNLAQAVQLLSYETR 157


>gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 241

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A     Y T+
Sbjct: 107 NGPVALVFGRENSGLSNDELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETR 158


>gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
 gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
          Length = 245

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +   QE ++  +A++ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGQRAAQESEHAPVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLA 146

Query: 267 NAAAVALYITQ-----NHFAK 282
            A  +  Y  +        AK
Sbjct: 147 MAVQILSYEIRVAHLDRQAAK 167


>gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 174

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 4/153 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+   +VL     P N G I+R      C   +      P +S+ + ++      H    
Sbjct: 19  NNMFTVVLYQPEIPPNTGNIIRLCANTGCSLHLVKPLGFPLDSSKMKRAGLDY--HEFAR 76

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248
              +           G +   L++      ++         + G E +GL  +  +T   
Sbjct: 77  LTVHENWEECMQALAGRRIFALTTKGTARPDKAAFQAGDVFVFGPETRGLPAEILDTLPE 136

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  M    +++N+SN  AV ++       
Sbjct: 137 NQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQQN 169


>gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
 gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
          Length = 175

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL       N G I+RS  A +    I        E   L + A+G L       I
Sbjct: 1   MIHIVLYQPEISPNTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQ-E 246
            +  D   K +            ++   + + K     N+ I L+ G E  G+      +
Sbjct: 61  HSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSK 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   + M    ++LN++N+  + +Y       
Sbjct: 121 NLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLN 155


>gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
 gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
          Length = 275

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL+ G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 134 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 185


>gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 256

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL+ G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 115 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166


>gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas
           maltophilia R551-3]
          Length = 256

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL+ G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 115 VALVFGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166


>gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20]
 gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
           Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
           Methyltransferase (Spou)
 gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
           Methyltransferase With A Cofactor Bound At A Site Formed
           By A Knot
 gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 160

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
 gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
          Length = 243

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A     Y  +
Sbjct: 106 QHPVAIVFGRERTGLTNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157


>gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus
           Ueda107]
          Length = 286

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E +GL  +     T   H+       +LN++ A  V  Y  +
Sbjct: 116 VAVVFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIR 164


>gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
 gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
          Length = 242

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +      H+       +LN++ A  V  Y  +
Sbjct: 110 VAIVFGREHSGLSNIELDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVR 158


>gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis MCLD]
          Length = 175

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL       N G I+RS  A +    I        E   L + A+G L       I
Sbjct: 1   MIHIVLYQPEISPNTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQ-E 246
            +  D   K +            ++   + + K     N+ I L+ G E  G+      +
Sbjct: 61  HSNYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSK 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   + M    ++LN++N+  + +Y       
Sbjct: 121 NLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQLN 155


>gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas
           fluorescens Pf-5]
          Length = 257

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL     +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREDSGLTNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVR 158


>gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 175

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +     +        + + L   + P N G ILR A   +    I            L 
Sbjct: 6   VSMAQFSSTIHGDPLLMRVALYQPDIPQNTGTILRMAACLNVAVDIIEPCGFDLSDRALR 65

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A    + +   R ++    L  +++ G + + +++    P    +  ++  ++ G E 
Sbjct: 66  RAALDYYDKVRVQRHASFELFLNNINASGARLVLMTTKGATPYHDVLYRNEDVILAGRES 125

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+  K  E+A     + M   +++LNV+ + A+ L      
Sbjct: 126 AGVPDKVHESAHLRVRIPMQQSLRSLNVAVSMAMVLGEALGQ 167


>gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis]
          Length = 167

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +                   G +   L++            D   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLSPDNVQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158


>gi|115699928|ref|XP_782457.2| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
 gi|115978414|ref|XP_001188472.1| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
          Length = 1252

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +  L+LG E +G+  +  +       +   G I++LNV  + A+ ++     
Sbjct: 1189 FKFPQRTMLLLGKEREGIPVELIQFLDVCVEIPQLGFIRSLNVHVSGALMIWEYTRQ 1245


>gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8]
 gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8]
          Length = 187

 Score = 69.1 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 2/167 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             E        +  +    + +V+ +V   HN+G++ R++ A   + I  T      E  
Sbjct: 6   WDEIERPAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHK 65

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALI 232
            L K+A GA + + + +       L+ +   G+    L              D   IAL+
Sbjct: 66  DLHKTALGAQDAVEWSQHDEPRPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAFPIALV 125

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +G E +G+ P   +       +   G   +LNV  A  +A+Y     
Sbjct: 126 VGNEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRR 172


>gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 221

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + L +GAE  G  P     A ++ ++   G + +LNV+ A A+AL   +  
Sbjct: 148 HAAPLEPDVCLAVGAEDHGCSPALLAGADAVTYVPQIGRVGSLNVAVATAIALSEARRR 206


>gi|255070677|ref|XP_002507420.1| RNA methyltransferase [Micromonas sp. RCC299]
 gi|226522695|gb|ACO68678.1| RNA methyltransferase [Micromonas sp. RCC299]
          Length = 2006

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 K AL+LG E +G+         +   +   G+I++LNV  +A+VA+     
Sbjct: 1949 YRFPRKTALVLGREREGIDADVLNVLDACVVIPQKGMIRSLNVHVSASVAMAAYAR 2004


>gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
 gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
          Length = 170

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +     +          +           ++   E         L+ G+E KGLR  
Sbjct: 65  CVRVHPSWEAFYAYWRGVETTEKRLVGFSKLGARPHAETGAYRRGDWLLFGSEDKGLRED 124

Query: 244 TQETATS---MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
             E       +  + +    +++LN+S +A + +Y      
Sbjct: 125 AMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQL 165


>gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
 gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
          Length = 647

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH---MPG-IIKALNVSNAAAVAL 273
           K +   L++G EG+GL     + A    ++    MPG  + +LNVS A  +  
Sbjct: 563 KREPCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGLLC 615


>gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
 gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
          Length = 292

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 125 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1001]
          Length = 277

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 125 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
 gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
          Length = 378

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 212 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 264


>gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG]
 gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittGG]
          Length = 160

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
          Length = 353

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 201 LHGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 253


>gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7]
 gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 227

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            K+ALI G E  GL  +    +  +  +        LN+S+A  + LY       +
Sbjct: 102 KKVALIFGRESVGLTREEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKSRGE 157


>gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218]
          Length = 243

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A     Y  +
Sbjct: 106 QHPVAIVFGRERTGLTNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157


>gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 171

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+ LI+G+E KG+  +  +      H+ M G   ++NV+ A  +AL+    
Sbjct: 114 NKLILIIGSERKGVSEQLLKHCDFATHITMFGKNSSMNVAQATGIALFQITK 165


>gi|325186501|emb|CCA21041.1| hypothetical protein VOLCADRAFT_116506 [Albugo laibachii Nc14]
          Length = 314

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 3/152 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R S++++VL+   D  N  A+LR+A       +   +           + A  + + I
Sbjct: 81  QQRTSRIVLVLEASCDMFNQQAVLRTAECLGVQHVWIVEPAFYKAVKSDRRIARQSSQWI 140

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKT 244
              R       L  + + G++        +    Q       D++A+++G E  G+    
Sbjct: 141 SVRRFKTSEACLVALFAEGYEVWATDLSQRSVSLQSGTLSVPDRLAIVMGRETDGVSETM 200

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + A    +L + G   +LN++ A  + L+  
Sbjct: 201 LQAAQHRVYLPIYGFTDSLNLNVATGMVLFQI 232


>gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320]
 gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis]
 gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis]
          Length = 167

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 10/158 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E     + 
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQH 60

Query: 193 SNLTDA--------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +                   G +   L++            D   L+ G E +GL P  
Sbjct: 61  HDYYAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDYLLFGPETRGLPPYV 120

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN  AV ++      
Sbjct: 121 LDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQL 158


>gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 340

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 37/271 (13%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +S                +  A           L +   L  L  D    
Sbjct: 59  DYTQLTDVALRSVREPAEGLFIAESSKIIRRAHAAGMVP-RSYLTSPKWLFDLA-DLIAA 116

Query: 89  HPFPVKTVPPQTIDKIVGKE--------------------------------AVHQGLAL 116
           +  P+       ++ + G                                   V      
Sbjct: 117 YDAPIFIGTDAAVEALTGFHLHRGALAAMHRPAMDDVSQLVAKARRIVVIEDVVDHTNVC 176

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                        R    + VL+ + D  N+G+  R+A A   D ++ +   +       
Sbjct: 177 GPKLAHPEPAAEPRRRSRIAVLEGLVDHTNVGSAFRNAAALGLDAVLVSPTCADPLYRRA 236

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALIL 233
            + + G +  +P+ RI      +  + + G+                     ++ +AL+ 
Sbjct: 237 VRVSMGTVFQVPWTRIPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDHENLALVF 296

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G EG G+ P+T         + M G + +LN
Sbjct: 297 GTEGHGITPETDALLDRRVTIPMMGGVDSLN 327


>gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
 gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
          Length = 338

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 169 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
          Length = 160

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T A         + + L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFAAFLESEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 309

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
 gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
          Length = 309

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 303

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei DM98]
          Length = 192

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 23  TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 74


>gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 309

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 14]
 gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 112]
 gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
 gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
          Length = 301

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
 gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
          Length = 303

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei B7210]
 gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
 gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106a]
 gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
          Length = 311

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
 gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 7894]
 gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei BCC215]
 gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           SAVP1]
 gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10229]
 gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10247]
 gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
          Length = 303

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
 gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710b]
 gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
          Length = 346

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 169 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
 gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 23344]
 gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
          Length = 306

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 137 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei 91]
 gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
 gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
          Length = 303

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 169

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 3/134 (2%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
                 A   +  G           +    K     L++   + I+   D          
Sbjct: 15  QNSGNIARTCAVTGARLHMVGPMGFAIDDKKLKRAGLDYWHQLDITYYKDLADFFSKNKG 74

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQETATSMAHLHMPGIIKALNV 265
                +S   +        D   L+ G E  GL  +   +  A     + M    + LN+
Sbjct: 75  PFFYFTSKGPRRHVDVQYPDGAYLVFGREDAGLPEELLVRHEAD-CVRMPMRRGERCLNL 133

Query: 266 SNAAAVALYITQNH 279
           SNA AV +Y     
Sbjct: 134 SNAVAVGVYEVLRQ 147


>gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 173

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 6/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + ++L       N   I+R+  A +    I            L + A+G         I
Sbjct: 1   MINVILYQPEISPNTANIIRTCFATNAKLHIIKPTAFDLHPHWLKRKAAGHFLSEIEHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQE- 246
               +   K +                 + + KN      +I ++ G E  G+  K  + 
Sbjct: 61  HANYEQFFKKYGDKNIYYITRYGLSNYSQIDWKNELDNNKEIWVMFGTESTGIPKKIMQT 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N+ A+ LY     
Sbjct: 121 KIANCLRIPMFAQCRSLNLANSVAIVLYEIMRQ 153


>gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1]
          Length = 279

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 138 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 186


>gi|328769754|gb|EGF79797.1| hypothetical protein BATDEDRAFT_11794 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 158

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K  ++LG E +G+          +  +   G+I++LNV  + A+ ++     
Sbjct: 95  FEFPRKTVVLLGKEREGIPTHLMAHLDHVLEIPQFGVIRSLNVHVSGALIVWEYTKQ 151


>gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii
           C-113]
          Length = 246

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++A++ G E  GL     +      H+       +LN++ A  V  Y  +
Sbjct: 106 LKGEVAIVFGRENSGLSNFELDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIR 158


>gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 247

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           LP     +   P+ + +  G                       R   L + +++  +  N
Sbjct: 53  LPEGPEAEKYDPELLAE--GDRRNVVDAYRYWTREAIREDIDKRRHALHIAIENFENDSN 110

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A AF+ D +    R   +    +       L H   +       A Q +    
Sbjct: 111 IGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVA 170

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                     +         ++  L+ G EG G+ P+ Q+ A     +   G  +++N  
Sbjct: 171 IDNTPGCVPLET----AELPERCLLLFGQEGPGVSPEAQDAAVMTCSIAQFGSTRSINAG 226

Query: 267 NAAAVALYITQNH 279
            AA +A++     
Sbjct: 227 VAAGIAMHAWIRQ 239


>gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 239

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++    HNIG ++R+A AF+ + +    +   +    +       L H   
Sbjct: 86  RRFPFHVAIENFTSDHNIGTVVRTANAFAAEAVHIVGKKRWNRRGAMVTDRYQHLYHHST 145

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +           +       +  S   +         ++  L+ G EG G+  + Q  A 
Sbjct: 146 VNDVLQWAHEHDLTVIAVDNVPGSVPVET----AELPERCLLLFGQEGPGVSEEAQRGAV 201

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 202 QTVSIAQFGSTRSINAGVAAGIAMHAWVRQ 231


>gi|257057786|ref|YP_003135618.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587658|gb|ACU98791.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 238

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++    HNIG ++R+A AF+   +    +   +    +       L H P 
Sbjct: 75  RRHPFHVAIENFQHDHNIGTVVRTANAFAAAAVHIVGKRRWNRRGAMVTDRYQHLHHHPQ 134

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +          +   +          +  L+ G EG GL    Q+ A 
Sbjct: 135 VSGLVDYATERGLTIVAVDNTPGAQPVET----VRLPRECVLLFGQEGPGLSEDAQQAAE 190

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +   G  +++N   AA + ++     
Sbjct: 191 LVVSIAQFGSTRSINAGVAAGIVMHTWVRQ 220


>gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE]
 gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittEE]
          Length = 160

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
 gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
          Length = 154

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 4/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+      D  +                    L++   + +  L
Sbjct: 4   VVLYQPQIPQNTGNIVRTCSVTGSDLYLVAP---LGFQITDRWLKRAGLDYWEGVNMQVL 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  + + S        SS +K+P  +        L+ G+E  GL     E        L
Sbjct: 61  ENLEEVLESQQTPFYFFSSHAKRPYSKISFTTDDWLVFGSETHGLPKTFVEKWPEKFISL 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    + LN++ +  +A+Y     
Sbjct: 121 PMIEGKRCLNLATSVGIAVYEAYRQ 145


>gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 168

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  L+          N+G +LR+  A      +   R      A+   +       
Sbjct: 17  SHGCWDHLVAAPLWPLHGANLGTLLRTCDAAGA--CLAVPRLPWVPEALARGNTLRRPAC 74

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           + +          Q+        + L+ +S +  +  +   +  ++LG E  G+ P+  +
Sbjct: 75  VHWTGSPVRWLERQRERGSAVVGVELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALD 134

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  + M G   +LNV+ A ++ LY
Sbjct: 135 LLDVVVEIPMVGTGASLNVAVAGSLVLY 162


>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
 gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
          Length = 243

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KN+K AL+ G E  GL+ +  +    +A++       +LN+S A  V  Y  + +F K
Sbjct: 110 KNNKFALLFGNETSGLKNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNK 167


>gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis]
          Length = 164

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K AL++G E  GL  +  +       + + G+  + NV+ A A+A+Y     
Sbjct: 102 HDFAFPRKTALVIGNERTGLDDEELKLVDDCTEIPVWGMPHSYNVATATAMAMYEYCKQ 160


>gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 262

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +          EQ     ++AL+ G E  GL  +  +      H+       +LN+
Sbjct: 90  PWPLLDPRECGVTSCEQAAAGGEVALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNL 149

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 150 AAAVQVLAYEVR 161


>gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 224

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           LP     +   P+ + +  G                       R   L + +++  +  N
Sbjct: 30  LPEGPEAEKYDPELLAE--GDRRNVVDAYRYWTREAIREDIDKRRHALHIAIENFENDSN 87

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A AF+ D +    R   +    +       L H   +       A Q +    
Sbjct: 88  IGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVA 147

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                     +         ++  L+ G EG G+ P+ Q+ A     +   G  +++N  
Sbjct: 148 IDNTPGCVPLET----AELPERCLLLFGQEGPGVSPEAQDAAVMTCSIAQFGSTRSINAG 203

Query: 267 NAAAVALYITQNH 279
            AA +A++     
Sbjct: 204 VAAGIAMHAWIRQ 216


>gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 136

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 31/97 (31%), Gaps = 1/97 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 + +    +   + ++        ++ + KP  +    +   +  G+E  G+   
Sbjct: 31  YWDKLDLHVWESIEEFFEKNTITDNAHFATTKTDKPYFEAEFKEGDFIFFGSETAGIPEN 90

Query: 244 TQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      + M    ++LN++ +  + LY     
Sbjct: 91  ILNAHKEQNITIPMTKEGRSLNLAISTGIVLYDAIRQ 127


>gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus]
          Length = 407

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273
           +   +       A+++G E  GL P     A         + +   + +LN + AAA+ L
Sbjct: 322 QYYYENWIQSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVL 381

Query: 274 YITQNHF 280
           +  +   
Sbjct: 382 FEGKRQL 388



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 2/167 (1%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K     R   K+ +  +      +   + L G+  +  AL   +       +T   L 
Sbjct: 73  YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGLRLIRDALQAGAAPRALFFSTAEHLR 132

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L           +  V  + I       A    + + + P  +          ++++ D
Sbjct: 133 ELPP--APLKGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPTAQLPIVLICD 190

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           ++ DP N+G ILRSA    C+ ++ TK         + ++  GA   
Sbjct: 191 NIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFR 237


>gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 156

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII--KAL 263
            +    ++  K    +    D+  ++ G E  GL    +E        + M  +   ++L
Sbjct: 74  CKYYLATTKGKHFYHEVKYEDESYILFGKESAGLPQWLREKYEDDCIRIPMNEVKAERSL 133

Query: 264 NVSNAAAVALYITQNHF 280
           N+SN+ A+ +Y      
Sbjct: 134 NLSNSVAIVVYEALKQL 150


>gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 152

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + + G E +GL  +  +       L M    ++LN+SN  ++  Y      
Sbjct: 91  YQSGDSFLFGPETRGLPREILDQ-YQGITLPMQAESRSLNLSNCVSIVAYEAWRQL 145


>gi|213026633|ref|ZP_03341080.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 105

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +  + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 1   MTQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 41


>gi|66824597|ref|XP_645653.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
 gi|60473876|gb|EAL71815.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
          Length = 310

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++KIAL+ G E  G+    +  +    +L M G +++ N+S + A+ L
Sbjct: 211 DEKIALVFGNESNGISELMRSLSDRRFYLPMVGFVESFNISVSVAMTL 258


>gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 156

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGII--KALNVSNAAAVALY 274
               +    D   ++ G E  GL    +E        + M  +   ++LN+SN+ A+ +Y
Sbjct: 85  HFYHEVKYEDDSYILFGKESAGLPQWLREMYEDDCIRIPMNEVKAERSLNLSNSVAILVY 144

Query: 275 ITQNHF 280
                 
Sbjct: 145 EALKQL 150


>gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas sp. SN2]
          Length = 255

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +    +  + L QE+ N  +AL+ G E  GL  +  +       +       +LN+
Sbjct: 86  HSWPMLGPRECGEKLVQEVSNFPVALVFGRENSGLSNEELQQCHFHMCIPANPEYSSLNL 145

Query: 266 SNAAAVALYITQ 277
           + A     Y  +
Sbjct: 146 AAAVQTLCYEIR 157


>gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 181

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +    +++       +    +       +   II    +   +  +   SA+      
Sbjct: 1   MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                       +  +   F             +    ND + L+ G E  G+      E
Sbjct: 61  CIRYDDWNDFITKHPNVTLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N   +A Y     
Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 283

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 142 IALVFGREHAGLTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 190


>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 189

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R + ++++LD++   +NIG++ R+A AF  + +      +      + K+A GA 
Sbjct: 18  EFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGAT 77

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLR 241
           E + +  + +  D ++K+     +   +       +    K +   KIA+I G E KG++
Sbjct: 78  ETVVWEHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIAVIFGNEVKGVQ 137

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            K    +  +  +   G   +LN+S +  V L+   +   
Sbjct: 138 QKVVSASDGVIEIPQAGSKHSLNISVSTGVILWDLYSKLK 177


>gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 166

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       IA+++G E  G+     +   ++ H+ M G   ++NV  A  VALY  
Sbjct: 102 PIHTFNVPTKKPIAIVIGDENFGISNTALKQTDAIIHIDMFGQNSSMNVVQATTVALYEI 161

Query: 277 QNHF 280
               
Sbjct: 162 TKQL 165


>gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810]
          Length = 160

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 255

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE     +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVKSIQEAAQAPVALLFGRERVGLTNDELQKCHFHVQIPANHEYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYEVR 157


>gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
 gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
          Length = 240

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            K A++ G E  GL  K  +  +   ++       +LN+S+A  +  Y     F+
Sbjct: 111 GKAAIVFGNERTGLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFRKFS 165


>gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 257

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 257

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
 gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
          Length = 163

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R+  A      +        +   + ++       +     
Sbjct: 1   MMHIVLHEPEIPQNTGNIARTCAATGATLHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  + L+K +          S            ++  ++ G E  G+  +   +   + 
Sbjct: 61  KDYEEFLEKNNYPKVYMATTKSRQTYTD--VSYEEECYIMFGKETAGIPEEILLDNKETC 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SN+ A+ +Y     
Sbjct: 119 IRVPMISEARSLNLSNSVAIVIYEALRQ 146


>gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 257

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
 gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
          Length = 247

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++AL+ G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 109 QGRVALVFGREDSGLTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECR 160


>gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus
           oremlandii OhILAs]
          Length = 156

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 4/152 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +        +   + ++     E +     
Sbjct: 1   MLHVVLLEPEIPQNTGNIARTCAATGSVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  + L K            ++           +   ++ G E  G+      E   + 
Sbjct: 61  DSYEEFLSKNPEATIYYATTKAEKAHSE-MVYPEENCYIMFGKETAGIPKNILNENKETC 119

Query: 252 AHLHMP--GIIKALNVSNAAAVALYITQNHFA 281
             + M      ++LN+SN+ A+ +Y     + 
Sbjct: 120 IRIPMVDLEKARSLNLSNSVAIVVYEVLRQYN 151


>gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
 gi|89517831|gb|EAS20487.1| tRNA/rRNA  methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
          Length = 175

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L++VLD+V   +NIG++ RSA A+  + I      +      + K+A GA E + +
Sbjct: 21  DKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTALGATETVAW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247
               +  D +++++  G  T  +         +  K    K+A+++G E KG++ +  ++
Sbjct: 81  EYRDHTIDIIKELNEQGVTTCAIEQAEDSVSLRGFKPSTKKVAVVMGNEVKGVQQEVVDS 140

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++  L   G   +LN+S    + +Y  
Sbjct: 141 CDTVIELEQYGTKHSLNISVCTGIVIYDL 169


>gi|195053324|ref|XP_001993576.1| GH20351 [Drosophila grimshawi]
 gi|193895446|gb|EDV94312.1| GH20351 [Drosophila grimshawi]
          Length = 1157

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +K  L+LG E  G+             +   G++++LNV    ++ ++      +K
Sbjct: 1097 FKFPEKCILLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1156


>gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei]
          Length = 494

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 73/225 (32%), Gaps = 8/225 (3%)

Query: 60  ALNNPSRKIFQ----LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           A  N   K  +    ++  +    +   + +    F       +       K+       
Sbjct: 271 ASENGQEKKKKTTSQIINGEACFNKSSENIDYDKNFENFLKQTKK---NYQKKFDPIDNI 327

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESA 174
           +E            + + L+++   ++   N+  + R+   F+   ++ +          
Sbjct: 328 IEINNEFRKKYQLRKKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQF 387

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
               S +    +I  ++  ++   L K            ++  K L   I  +   LILG
Sbjct: 388 QKISSTANKWMNIQELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPENCILILG 447

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +GL             +   GII++LNV  +AA+ +Y     
Sbjct: 448 DEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 492


>gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866]
 gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846]
 gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 160

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
 gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
          Length = 154

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 1/151 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N+G I R A A +C   +         +    + A         +  
Sbjct: 1   MFNIVLLEPRIPGNVGTIGRLAFAMNCRLHLIKPYGFGEITEKEVRRAGLDYWFDLDVTE 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
               +     +    +    ++ +K+               G E  GL      +     
Sbjct: 61  YENIEDFWSKNPLNDRHFFATTKTKQVYFDAKYEVGDYFYFGREDAGLPEDLLVKNEKGC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M    ++LN++N+ ++  Y       K
Sbjct: 121 ITIPMTNDARSLNMANSVSIVAYEALRQNFK 151


>gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 181

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +    +++       +    +       +   II    +   +  +   SA+      
Sbjct: 1   MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                       +  +   F             +    ND + L+ G E  G+      E
Sbjct: 61  CIRYDDWNDFITKHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N   +A Y     
Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19]
          Length = 234

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +KIA++ G E +GLR    E   +  H+      +++N+S++ AV LY  + 
Sbjct: 103 EKIAVVFGPEDRGLRTWEVELCDATLHIPTSEEYRSMNLSHSVAVVLYELKK 154


>gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 185

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     + M   I+A N+SN+AA+ ++     
Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 185

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     + M   I+A N+SN+AA+ ++     
Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 199

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 36  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDIRFYDHL 95

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + L +           +       +   +      + G E  GL     ++ A     +
Sbjct: 96  DEFLAQCDGSLHVISKFADQVYSDKDYNDRQSH-YFLFGREDTGLPELFMRQYADRALRI 154

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSNA  + +Y     
Sbjct: 155 PMNDEHVRSLNVSNAVCMIVYEALRQ 180


>gi|195056077|ref|XP_001994939.1| GH13300 [Drosophila grimshawi]
 gi|193892702|gb|EDV91568.1| GH13300 [Drosophila grimshawi]
          Length = 1158

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +K  L+LG E  G+             +   G++++LNV    ++ ++      +K
Sbjct: 1098 FKFPEKCILLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1157


>gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 240

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL     +       +       +LN++ A     Y  +
Sbjct: 106 KHPVALVFGRERTGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVR 157


>gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 174

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I+R+  A S    I            L +SA+G L       +
Sbjct: 1   MINIVLYQPEIPPNTGNIIRTCFATSSKLHIIKPIAFDLNPRFLKRSAAGHLLSEIQHEV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQ- 245
            +  +     +             K   + + K         I  + G E  G+  K   
Sbjct: 61  HDSYNDFLAKYQNENIFYITRYSQKSYSDIDFKLETFDGKKDIFFVFGTESTGIPKKILS 120

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       + M    ++LN++N+  V +Y      
Sbjct: 121 QNIDKTLRIPMAPENRSLNLANSVVVIIYECLRQL 155


>gi|237739099|ref|ZP_04569580.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423699|gb|EEO38746.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 113

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           P  +    +K A+I G EG+G+  +    +     + +    ++LNV+ A+A+ LY  +
Sbjct: 49  PYNKIKLKEKNAVIFGNEGRGICDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFR 107


>gi|315501742|ref|YP_004080629.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315408361|gb|ADU06478.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 207

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 55  RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPT 114

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I         +++   G   +  S   +      +   +  L+ G EG GL    +    
Sbjct: 115 IEEFVAWARDERLPVVGIDNLPGSRPMET----AVLPRRCVLLFGQEGPGLSAVARSACD 170

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  +   G  +++N   A+ +A++    
Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIR 199


>gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 244

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL  +  E    +  +       +LN++ A  V  Y   +H
Sbjct: 109 VALVFGNETFGLSIEEVEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSH 159


>gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001]
          Length = 588

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVAL 273
            +   LILG EG GL    ++ A+    +    M   + +LNVS A A+  
Sbjct: 507 KEPTILILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATALLC 557



 Score = 40.6 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--- 77
            +   +    K+   F    ++T+       +G   V AAL N  RK+++L   + +   
Sbjct: 246 RRSEDDDSYAKRSSDFPVSVQYTTAASQFL-FGRSVVKAALKNSKRKLYRLYVYQGSNKN 304

Query: 78  ---LARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
                     +       V  +    Q +   + K   H GL +E +PL    L
Sbjct: 305 TTKDDDWILASAEKKNIKVTRIYENDQKLLDKMSKGRPHNGLVIEASPLPQLPL 358


>gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3]
 gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae
           A3]
          Length = 246

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E  GLR +  E    +  +        +N+S+A +V LY   
Sbjct: 111 LKGNLAIVFGREDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELY 163


>gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88]
 gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88]
          Length = 162

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM-PGIIKALNVS 266
               ++ S K        +   ++ G E  GL    +E    +   + M     ++LN+S
Sbjct: 83  FYFSTTHSTKTYSDVEFEEGDFIVFGRETSGLPDYVREDNRDTCIKVPMIKSSTRSLNLS 142

Query: 267 NAAAVALYITQNHFA 281
           N  A+  Y       
Sbjct: 143 NTVAIVTYEALRQMN 157


>gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 185

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     + M   I+A N+SN+AA+ ++     
Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 241

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +AL+ G E  GL     +       +       +LN++ A     Y  + H
Sbjct: 106 QHPVALVFGRERTGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMH 159


>gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
 gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
          Length = 160

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
 gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
          Length = 278

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 126 HGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxidans DMS010]
 gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxydans DMS010]
          Length = 253

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  IA++ G E  GL  +  +    + ++       +LN++ A  V  Y  +
Sbjct: 119 NTHIAIVFGREHSGLSNEELDRCQYLINIPANPDYSSLNLAAAVQVLAYELK 170


>gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
 gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
          Length = 278

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 126 HGEIALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|145593291|ref|YP_001157588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145302628|gb|ABP53210.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 207

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG GL    +     +  +   G  +++N   A+ +A++    
Sbjct: 146 LPRQCVLLFGQEGPGLSDPARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 199


>gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
 gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
          Length = 148

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +  L+LG E  G+             + M G+ ++LN   + A+A++     
Sbjct: 92  FTFPQRCLLLLGNEQSGVPQHLIAMLDKCVEIPMLGVTRSLNAHVSGAMAVWQYVQQ 148


>gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G E  GL  +  +   ++ ++       +LN+S A  V  Y  +
Sbjct: 119 NAALLFGNERFGLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECR 168


>gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 177

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +K A+++G E KG++ +    +     +   G   +LN+S    V ++  
Sbjct: 119 LAEKYAIVMGNEVKGVQQEVINASDFCIEIPQLGTKHSLNISVTTGVVIWDL 170


>gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
 gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
          Length = 165

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+ VA      +        +   + ++     E +  +   
Sbjct: 11  LHVVLLEPEIPQNTGNIARTCVATGATLHLIGPMGFSIDEKQVKRAGLDYWE-LLDLNYY 69

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           +      + +         +   K   E     D   ++ G E  G+  +  +    +  
Sbjct: 70  DRYADFLEKNKHPKVYCATTKAQKNHSEVAYPQDDTYIMFGKETAGIPKEILKDHEETCI 129

Query: 253 HLHMP--GIIKALNVSNAAAVALYITQNH 279
            + M      ++LN+SNA ++ +Y     
Sbjct: 130 RIPMVDIERARSLNLSNAVSIVVYEVLRQ 158


>gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 216

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL     +       +       +LN++ A     Y  +
Sbjct: 82  QHPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSSLNLAMAVQTLCYEVR 133


>gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 276

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + G E +GL  +          +       +LN++ A A+  Y   
Sbjct: 122 VFGPEDRGLSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELY 167


>gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 154

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +         L+ G E  GL  +       +  A + M    ++LN++NAA +A+Y   
Sbjct: 86  HDNIAYQAGDVLLFGPEPTGLPAEVAHHPRVSDRARIPMLAGRRSLNLANAATIAVYEAW 145

Query: 278 NH 279
             
Sbjct: 146 RQ 147


>gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21]
          Length = 160

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMKQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina
           ymp]
          Length = 262

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 113 VALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVR 161


>gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 193

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  I L+ G E  G+ P   E   ++  L M GI  +LNV+ A  +ALY
Sbjct: 137 SRPILLVAGNEVTGIDPDIFELCDTVTFLPMFGIKNSLNVAVATGIALY 185


>gi|196016798|ref|XP_002118249.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
 gi|190579150|gb|EDV19252.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
          Length = 187

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +  L+LG E +G+     +       +   G I++ NV    AV ++     
Sbjct: 130 YDFAKRSILLLGNEREGIPVPLLKMVDECVAIPQLGTIRSFNVHVTGAVLIWEYSKQ 186


>gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
 gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
          Length = 176

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    +++VLD++   HN+G+  R++ AF  + I      +      + K+A GA 
Sbjct: 16  DFKETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLR 241
           E + +  ++   +AL  +   G+  + +    K           + K A + G E  G+ 
Sbjct: 76  ESVAWQHVATTEEALATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGNEVFGVD 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  + A     +   G   +LN+S +  V ++
Sbjct: 136 EEVVKQADVCIEIPQFGTKHSLNISVSMGVVIW 168


>gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280
           +++AL+ G E +GL  +       +  +       +LN++ A  + LY       + 
Sbjct: 112 ERVALVFGPEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNR 168


>gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G+E  GL  +       +  +   G   ++N+  A A+ LY    
Sbjct: 123 PVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELAR 173


>gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
 gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
          Length = 246

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  +  + +      +K+A++ G E  GL+    +    +  +       +LN++ 
Sbjct: 88  WPEMTPRECAEKVLINEPGNKVAIVFGRENSGLKNHELDLCHFLLRIPCNSEYSSLNIAA 147

Query: 268 AAAVALYIT 276
           AA V  Y  
Sbjct: 148 AAQVVCYEL 156


>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
          Length = 454

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYI 275
             +       AL++G E  GL  +  + A         + +   + +LN + AA++ L+ 
Sbjct: 377 YHERWAQSNTALVIGGETHGLSLEALQLAEKTLGQRLFIPVVPWVDSLNSAMAASILLFE 436

Query: 276 TQNHF 280
            +   
Sbjct: 437 GRRQL 441



 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 2/180 (1%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             + K     +   ++ S  +   +      + L G   +  AL   +       ++   
Sbjct: 113 LRFEKASPGDKRLARLVSVARSRTYRELQGKILLEGRRLICDALAAGANPQMVFFSSVEK 172

Query: 78  LARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLL 135
           L+ L  D         VK    +    +V  + V    +      L    D + ++  L 
Sbjct: 173 LSELPLDKLKRATLVKVKFEDIKIWSDLVAPQGVIAIFSRPDPSRLVFPRDQMGQSVPLS 232

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D+V DP N+G ILR A A  C  ++ TK    +    + +SA GA   +P     + 
Sbjct: 233 LICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLPIFPSLDW 292


>gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
 gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
          Length = 225

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     +VLD + D  N+ A+LR+  +     +                +         
Sbjct: 36  HRTRNFTVVLDRLEDSFNMAAVLRTCESMGVQEVHIIINPEAPFVPNSRVAQGCDKWLDV 95

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  +                     +    L     + K+AL+ G E +G+        
Sbjct: 96  KLYRTFAECREHLKSRGFSLYASAIQEGATSLYTLRFDGKMALVFGNERRGVSEDVLAGV 155

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S AA+  +
Sbjct: 156 DGTFWVPMKGFSQSLNISAAASACI 180


>gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 241

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A     Y T+
Sbjct: 107 NGPVALVFGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETR 158


>gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 257

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G+E  GL  +  E   ++ ++       +LN++ A  +  Y  +
Sbjct: 119 NCALVFGSERYGLSNEDVEQCHALINIPANPDYSSLNLAQAIQILAYECR 168


>gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 255

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis
           mellifera]
          Length = 417

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 90/335 (26%), Gaps = 57/335 (17%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVH--------- 55
             K  E   + K + + KL+ N +    + +  +  +   +   + L G           
Sbjct: 78  ETKNKETEITAKKNKFMKLKENDKIITSLMTKLKSRKKREKDNEIILEGQRLITDALKSG 137

Query: 56  -----------TVSAALNNPSRKIFQ---------------------LLATKNALARLDW 83
                      ++ A L  P                           +  T +    +  
Sbjct: 138 VIPSVIIYNDPSIIATLKLPEEVKLYKVPYKTIQLWSALTTSPGLLGIFKTPDVNNNIPV 197

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--------NSQLL 135
           +  LP       +        + + A   G            L   +        + QL 
Sbjct: 198 NNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRSAAGTHFQLP 257

Query: 136 MVLDHVNDPH----NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++     D         + +    +   D  ++       +S++     +       +  
Sbjct: 258 ILAFPTWDEIPSVITEDSNIFITDSNFGDEFLSYYSSDILQSSLQIFDINPEEFKSKFSL 317

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR----PKTQET 247
             N  D +   +    +   L          +    K  +IL  E +GL        +E 
Sbjct: 318 NDNKEDEIIPKNKNMMRQFMLKFPIIPYYSIDYTKKKSVIILSGETEGLNFNSYKFLKER 377

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   ++ +   + +LNV  A ++ ++  +  F K
Sbjct: 378 NSIRINIPLIKGVDSLNVGVALSIVIFEIKRQFFK 412


>gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 171

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 27  VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 75


>gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
 gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
          Length = 257

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
          Length = 244

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +  +   +   +  +A++ G E  GL  +  +      ++       +LN++
Sbjct: 87  PWPMVEPRECGERCVKASNHSPVAIVFGRERVGLTNEELQKCHYHLYIPTNPEYGSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQLVSYEIR 157


>gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 266

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           D++A++ G E +GL     E    +  +       +LN++ A  V LY 
Sbjct: 114 DRVAVVFGPEDRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYE 162


>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
 gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
          Length = 701

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 +AL+LG+EG GL    +    +   + M G +++LNV  A  V ++  
Sbjct: 602 APWAGGVALVLGSEGGGLSADVRRVC-APISVPMEGAMESLNVGVAGGVLMFAI 654


>gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
          Length = 156

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N G+I R  V   C   I            + ++       +     
Sbjct: 1   MFNIVLVHPQIPQNTGSIGRMCVNADCSLHIVKPTMFEISDKTVKRAGLDYWHLLDVHVY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            +L D L+       +    ++ +KKP  +        L  G E  GL  +  +      
Sbjct: 61  ESLEDFLKMHADKVERFFFATTKTKKPYFEASFQAGDFLFFGGESTGLPMELMQLKWENA 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN + +A + LY     
Sbjct: 121 ITIPMGKNGRSLNQATSAGIILYDAIRQ 148


>gi|145485115|ref|XP_001428566.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395653|emb|CAK61168.1| unnamed protein product [Paramecium tetraurelia]
          Length = 231

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 8/159 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  +  ++L ++  P NIG I+R+A AF+   +    +   ++             + 
Sbjct: 1   MQQQFEGYLLLHNIAKPKNIGTIIRNAAAFNLTKVFMIGKQGQTKKKFQIAEGFSFFGNH 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS-------KKPLEQEIKNDKIALILGAEGKGL 240
                 N         +  +  +              + +            LG EG GL
Sbjct: 61  GTYDQMNFHLFNNLKEAKEYFVLNNIFVCGVEIGEGSQNIITNPFKGNTVFFLGNEGTGL 120

Query: 241 RPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQN 278
            P+ +       ++        +LNV  A+ +  +    
Sbjct: 121 IPEHKALCDHFVYIPQYTQKTASLNVGVASGIIFHHFAQ 159


>gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 254

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 VALVFGREHSGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
          Length = 154

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T    + M    ++LN+SNAA VA+Y     
Sbjct: 91  YRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAATVAVYEAWRQ 147


>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
 gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
          Length = 243

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 17/227 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +  +  +  V        +         N   +     +    F       +  DK+  
Sbjct: 27  NSFIIESIKIVEQI----PKDFECEFVFVNEDMK-----DYETNFKKIVFSNKLFDKLSL 77

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E          +  L        +S  +++LDH+ DP N+G I+RSA AFS   II   
Sbjct: 78  LENP-----EGVSACLKIKNQKEISSDKILLLDHIQDPGNLGTIIRSAEAFSFKDIILLN 132

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                 +    +++ G++  + +I +        K        + L+  + K ++     
Sbjct: 133 SCVDIYNEKTIRASMGSIFRLNFIEVEIN---DLKDLLDKNYKLVLADMNGKSVDYYKSC 189

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           DKI L +G E  G+    +  +     + M G I++LN + AA++ +
Sbjct: 190 DKIILAIGNEANGISKSLKGLSNDFVSIKMDGRIESLNAAIAASILM 236


>gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 176

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSAS 181
                  + +++VLD++   +NIG++ R++ AF  + I            +    A  ++
Sbjct: 16  DFKQASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGST 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            A+          + + L+             + +        KN   AL+ G E KG+ 
Sbjct: 76  DAVSWEYAKTTMEVIEKLKIKDVKICSIEQAENATMLNDFTVEKNTTYALVFGNEVKGVD 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + S+  +   G   +LN+S +  V ++   +   
Sbjct: 136 QNIVNASDSVIEIPQFGTKHSLNISVSCGVVVWDLFSKLK 175


>gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis]
          Length = 542

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 43/292 (14%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K      + S++  +     + G   V   L         L+  + A   L    
Sbjct: 243 SNDAVKHCVKLRESSKYRREVGAALVSGADLVVE-LAPYCAPYRALVGLEEAQ--LPDGI 299

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        Q I  +    A          P       A    + ++ LD V DP 
Sbjct: 300 AAERYVTATAPVMQKIAGLGSVGAGALAAEAALPPTADLLGGAPGQLRRVLALDGVQDPG 359

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N+G +LR+A+A      +         +    +++ GA+  +P  + S            
Sbjct: 360 NLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKLPLAQYSLGQWQQLVEEQR 419

Query: 203 ---------------------------------HSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                                                             L+Q +    +
Sbjct: 420 LVPLAADPSRAAAAAAADARGTAGRDGSGSAAARQQQHGQAAAPEGDVGALQQRLAQLPV 479

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278
            L LGAEG+GL    +E       +   G    +++LNVS A A+ ++    
Sbjct: 480 CLCLGAEGQGLSAGVRERC-VAVSIPQSGGGELMESLNVSAAGAILMFALSQ 530


>gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 263

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +A++ G E  GL  +  +    +  +      ++LN++ A  +  Y  
Sbjct: 124 PVAILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYEL 172


>gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1]
 gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           DX-1]
          Length = 151

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G  LR     + +  I      P+      +S    L+ +  +R  + 
Sbjct: 3   IALFQPDIPQNTGTTLRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   + G + I L++  ++P  ++       L+LG E  G+       A +   + 
Sbjct: 63  LKFEQWRENAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LNV+ AAA+        
Sbjct: 123 MQPGLRSLNVAMAAAMVTGEALRQ 146


>gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 178

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    + +VLD+V    N+GA  R+  AF+ + I      +   +  + K+A GA   +P
Sbjct: 20  MAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTALGAELTVP 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQ 245
           +         + ++H+ G++ + +       +    +       AL+ G E  G+     
Sbjct: 80  WSYYETTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAPGVKYALVFGNEVMGVGQSAV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       +   G   ++NV+ +  V L+      
Sbjct: 140 DRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFRRI 174


>gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
          Length = 213

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 10/211 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + Q      +A+++GAEG G+R  T+ET  
Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCD 212


>gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 147

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            ++ A++ G EG GLR  T     S   + M G + +LNV
Sbjct: 94  PERTAIVFGTEGDGLRRSTIAACDSTVMIPMSGGVDSLNV 133


>gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 159

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +    +        L+ G E +G+     +    + 
Sbjct: 59  KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMTILDNLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN  AV +Y     F
Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148


>gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 153

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       +             +    ++ + +        D  AL+ G E  GL  + 
Sbjct: 50  YHDLADVQIHEDIESCFASLIDARIFAFTTHTTRHYTDVEYRDTDALLFGTEPTGLPEEH 109

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 T    + M    +++N++N+AAVA Y      
Sbjct: 110 SHHPRVTDQLRIPMLPGRRSMNLANSAAVASYEAWRQL 147


>gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 186

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    L+ G E  GL          T    + M   +++LN++N+A++A+Y     
Sbjct: 123 YSPTDLLVFGPEPTGLDDAVLNHPRITGEVRIPMLPGLRSLNLTNSASIAVYEAWRQ 179


>gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739]
 gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739]
          Length = 246

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + +I L+ G E +GL  +  +       +        +N+S+A AV LY       K
Sbjct: 105 YDGEIGLVFGRESRGLDNEELKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLK 162


>gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 181

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +    +++       +    +       +   II    +   +  +   SA+      
Sbjct: 1   MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                       +  +   F             +    ND + L+ G E  G+      E
Sbjct: 61  CIRYDDWNDFITKHQNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N   +A Y     
Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 159

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFEWDDKKLRRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +    +        L+ G E +G+     ++   + 
Sbjct: 59  KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAILDSLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN  AV +Y     F
Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148


>gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
 gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           331]
 gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
          Length = 240

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              L +  +   +       IA++ G E  GL  +          +       +LN++ A
Sbjct: 87  PWPLKTARECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146

Query: 269 AAVALYITQ 277
             +  Y  +
Sbjct: 147 VQILTYEMR 155


>gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 159

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDY--HEFVDIQ 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                      +   +   L++  +    +        L+ G E +G+     ++   + 
Sbjct: 59  KYKNFEDFLERAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIPMAILDSLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN  AV +Y     F
Sbjct: 119 KIRVPMCKDSRSMNLSNTVAVVVYEAWRQF 148


>gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +A++ G E  GL          + H+        LN+S+A A+ LY   N  
Sbjct: 115 VAVVFGRESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELYNTR 166


>gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
          Length = 160

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L +S      H      
Sbjct: 1   MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDY--HEFAEIK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + T           +   L++       Q        L+ G E +G+            
Sbjct: 59  RHKTFEAFLESEKPKRLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMKQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SN+ AV +Y      
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQL 148


>gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328]
 gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328]
          Length = 234

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+  +       
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKEYVIGVFRK 83

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                   +        ++LD +++  N+G I+RS +AF    +          +  + +
Sbjct: 84  EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL +  +K          L  ++   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPDNKIYSFLLDENSNELGDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +      +   ++    + +LN+  A ++A+Y ++
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232


>gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis EO147]
 gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis C6786]
          Length = 291

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  +  +++AH+       +LN++ A  V  Y  +
Sbjct: 137 TGDIALVFGNERTGLSNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 177

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           N K ALI G E KG+       +  +  +   G   +LN+S +A V ++   +  
Sbjct: 120 NQKYALIFGNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWDLWSKL 174


>gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 242

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +       +    E +   +A++ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLDPRQCGEQFAIEGQTHPVAVVFGRERTGLTNEELQLCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLCYEIR 157


>gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277
            K+AL+ G E  GL  +      ++  + M  +I++L+V++AA +AL   +  +
Sbjct: 170 GKLALVFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAR 223


>gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
 gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
          Length = 247

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +      H+       +LN++ A  V  Y  +
Sbjct: 111 VAIVFGRENSGLSNLELDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVR 159


>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
          Length = 430

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 229 IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + L++G E +G+        +E   +  ++ +   + +LNV  AA +  +  +  F 
Sbjct: 367 MVLVIGGETEGISLQSCKLLRERNCTRINIPLTNGVDSLNVGVAAGIVTFEMKRQFI 423



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 9/185 (4%)

Query: 7   KKSEKIFSLKDS-----HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           K+++K   +K+S      Y  L+ + +    +    +  +   +   + L G   +  A+
Sbjct: 71  KENQKENEIKESTAIEQKYIALKADDKMISSLMIDVKTKKRREKNSQMLLEGSRLIEDAI 130

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                         + +  L     LP    +  +P +TI            + +   P 
Sbjct: 131 QAGVVPKVIFFNRLSDVLPLS----LPKEVKLYKIPYRTIQLWSNLTTSPGIIGIFEIPD 186

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S    A     L ++ D++ +P N+G+ILR+A A  C+ ++  K         + +SA+
Sbjct: 187 VSNKKPANDAIPLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSAT 246

Query: 182 GALEH 186
           GA   
Sbjct: 247 GAHFR 251


>gi|159036337|ref|YP_001535590.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157915172|gb|ABV96599.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 207

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG GL    +     +  +   G  +++N   A+ +A++    
Sbjct: 146 LPRRCVLLFGQEGPGLSAPARAACDQLFSIAQYGSTRSINAGVASGIAMHAWIR 199


>gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
 gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
          Length = 241

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
           A + G E +GL  +  +      H+       +LN+  A  V  Y  +  H A
Sbjct: 107 AFVFGREDRGLTNEELQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLA 159


>gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 185

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     + M   I+A N+SN+AA+ ++     
Sbjct: 102 FVFGRETTGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|219126900|ref|XP_002183685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404922|gb|EEC44867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 38/108 (35%)

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +    +++A    +     +    +     T           Q + L  D  +       
Sbjct: 201 QHRLFAQNATEWITLREFTDTASCLHELRATGHQIWATDLSQQAVPLEKDDLQEAGHWPL 260

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++A++ G E  G   +    A    +L + G   +LN+S A A+ +
Sbjct: 261 PNQLAIVFGTEAVGCSQEMLRHADLRVYLPLRGFADSLNLSVATALVI 308


>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 247

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K  L+LG EG+GL             + M G +++LNV+ A  +  Y
Sbjct: 197 KACLVLGTEGQGLSDDALRAC-KPVAVPMSGEMESLNVAIAGGILCY 242


>gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 235

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            A      + + +L  T+  + +        +      + V    + K+      H+G+ 
Sbjct: 2   QAVFKARPQALRKLYLTEARIPQFKALLAWCVAQRIGYRVVEDADLSKLAA-STHHEGVV 60

Query: 116 LETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            E   +    L        +   L + LD V +PHN GAILRS+  F   G++     + 
Sbjct: 61  AEVLRVSPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTL 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             S   A+ A G  E +P +++     A+ ++   GF       +  + +       ++ 
Sbjct: 121 GLSGAAARVAEGGAEAVPLVQLPEAPLAMTQLRQTGFAVAATLVEGGQDVFAAALPQRLV 180

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++GAE +G+  +          +   G++++LNV++A AV 
Sbjct: 181 YVMGAESEGMDRQFARDCDLQLSIRGSGLVESLNVASATAVF 222


>gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 306

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 137 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|195112288|ref|XP_002000706.1| GI22376 [Drosophila mojavensis]
 gi|193917300|gb|EDW16167.1| GI22376 [Drosophila mojavensis]
          Length = 1157

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 23/67 (34%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                       +K  L+LG E  G+             +   G++++LNV    ++ ++ 
Sbjct: 1090 HSTNFTDFKFPEKCVLLLGHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWE 1149

Query: 276  TQNHFAK 282
                  K
Sbjct: 1150 YCKQHLK 1156


>gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 174

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 5   TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 56


>gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis TXDOH]
          Length = 306

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 137 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis E264]
          Length = 338

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 169 TGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 176

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + ++L       N   I+R+  A +    I            + + A+G         +
Sbjct: 1   MINIILYQPEISPNTSNIIRTCFAGNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQE- 246
               +   K +             K  ++ + K     N ++ ++ G E  G+  +  + 
Sbjct: 61  HENYEEFFKKYGDKNIYYVTRYGLKNYVDVDYKQELQTNGELWIMFGTESTGIPKRIMQT 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N+ A+ L+     
Sbjct: 121 NIPNCLRIPMFDECRSLNLANSVAIVLFEVLRQ 153


>gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
 gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
          Length = 591

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + L+ G+E KG+  K  + +T    +   G+I++LNV+ +A+V L     
Sbjct: 489 KPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVILAECWR 540


>gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
 gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
          Length = 171

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              T    R   + +V D V++  NIG++ R   AF  + II      P     + K++ 
Sbjct: 6   HYTTNFEKRIFPITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDNIPVFGRRMTKTSR 65

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGK 238
              + +P+   +++   + K+   G+         +          K +KIAL++G E  
Sbjct: 66  ATEKVVPFEITTDIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENF 125

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+ P+T   +  + H+ M G   ++NV  A  + LY     
Sbjct: 126 GVNPETIYESDVVMHIDMFGQNSSMNVVQATNIVLYEITRQ 166


>gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 232

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 59  AALNNPS-RKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           AA           +L  +N L+ +       P   PV       +D IVG   +H+G+  
Sbjct: 4   AAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFH-LHRGILA 62

Query: 117 ETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               +    L+ +      S L++V   +++  N+GA+ R+A AF  D ++  +      
Sbjct: 63  LGRRVRDDGLEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPL 122

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
                + + G++  +PY R     + L+++   GF   GLS D K  +    +++++AL+
Sbjct: 123 YRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALV 182

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +G EG+GL           A +     + +LN   A+ +ALY   
Sbjct: 183 IGTEGEGLPQSVLSRF-QTARIAQSPQVDSLNAGTASGLALYQMA 226


>gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 235

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +A + G E  GLR       +   H+       +LN+S+A  +  Y       
Sbjct: 108 VAAVFGREADGLRDDELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRT 160


>gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
 gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
          Length = 168

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D L  +       +   +            +    + G E  GL     +E    
Sbjct: 61  HKDLADFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LN+SN AA+ +Y       
Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152


>gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly]
 gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1]
 gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly]
 gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1]
          Length = 218

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K+A+  G E  GL     + A     + M G  ++ N+S A A+  Y   N  
Sbjct: 128 KMAVFFGTELTGLSHTILQNADLHLKIPMYGFTQSYNLSVAVAIVFYSLINRL 180


>gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 668]
          Length = 303

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++A +       +LN++ A  V  Y  +
Sbjct: 134 TGDIALVFGNERTGLSNEHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELR 185


>gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 171

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + IK+ K ALILG E  G+  +    A  +  +   G   + NVS +A + L+
Sbjct: 108 QNFRPIKDQKYALILGNEVFGVNEELIAEADEVIEIPQFGTKHSFNVSVSAGMFLW 163


>gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 234

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+  +       
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKEYVIGVFRK 83

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                   +        ++LD +++  N+G I+RS +AF    +          +    +
Sbjct: 84  EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL +  +K          L  +S   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPNNKIYSFLLDESSNELGDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +      +   ++    + +LN+  A ++A+Y ++
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232


>gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 165

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 2/147 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++++      +   A        +   +I    +S  E  V              +    
Sbjct: 5   VVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLGEREVRRAGLDYWEHVDVRVWPDW 64

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253
            T   Q             +          + D I LI G E  GL    +   A  M  
Sbjct: 65  DTFEAQLPTLGEPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAGLPEPVRTRWAHRMVA 124

Query: 254 LHM-PGIIKALNVSNAAAVALYITQNH 279
           + +    +++LN+S + AVA+Y     
Sbjct: 125 MPITSPHVRSLNLSTSVAVAIYERLRQ 151


>gi|159486240|ref|XP_001701150.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii]
 gi|158271953|gb|EDO97762.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii]
          Length = 113

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + ++ L+LG E  G+         +   + M G+ ++LN   + A+A++       +
Sbjct: 50  WPSHGRVVLLLGNEQSGVPQPLLPLLDACVEIPMLGVTRSLNAHVSGAMAVWQYVQQRGR 109


>gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis
           SB2B]
          Length = 240

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A++ G E  GL  +  +       +       +LN++ A  +  Y T+
Sbjct: 106 SGPVAIVFGRENHGLYNEELQACNYHVFIPANPEYMSLNLAQAVQIICYETR 157


>gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 245

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               LI G E +GL  +    A  +  +       +LN++ A ++  Y      
Sbjct: 113 KPAGLIFGREDRGLTNQEINYAQKLVSIPTSPEYTSLNLATAVSICCYELSQSL 166


>gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 156

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            SQL +V D+   P N G  +R+A        +        +   L ++      H    
Sbjct: 1   MSQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDY--HDLAD 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
              +           G +    ++ + K        D   L+ G E  GL  +       
Sbjct: 59  VQIHKDFDACMEALPGARVFAFTTHTDKWFTDVEYQDGDVLLFGTEPTGLPDEHVNHPRI 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T    + M    +++N+SN+A+ A++      
Sbjct: 119 TDQVRIPMVPARRSMNLSNSASTAVFEAWRQL 150


>gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 144

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   +LG E  G+ P+  +   S+  + M G   +LNV+ A ++ LY
Sbjct: 90  RGRTIAVLGHEQTGIPPEVLDLLDSVVEIPMVGTGASLNVAVAGSLVLY 138


>gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 162

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                        A   + +   +    ++ +K+     +      ++ G E  G+  + 
Sbjct: 50  YWDKLNIKRYCNFAEFLVQNDFPKIYMATTKAKQKYSDVLYEADAWIMFGKESGGIPEEI 109

Query: 245 QETATSM---AHLHMPGIIKALNVSNAAAVALYITQNH 279
                       + M   I++LN++N+ AV LY     
Sbjct: 110 LR--DHKETAIRVPMLKDIRSLNLANSVAVILYEALRQ 145


>gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 169

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      ++
Sbjct: 6   IVLFEPQIPANTGNIARTCAATNSPLHLIEPLGFSTDDKHLKRAGLDYWHDVDITYHKSM 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
              L  +       I   ++         ++++   + G E  GL  +  +E       L
Sbjct: 66  EAFLDYLGERPLYLITKFANHTYDEVDLARDEEQFFMFGKETTGLPEEFMRENEEKCLRL 125

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LN+SN AA+ +Y     
Sbjct: 126 PMNDTHVRSLNLSNTAAIVVYEALRQ 151


>gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 239

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 56/139 (40%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R + L +VL +++DPHN+ AI RS  AF    +      +P  +     SAS       
Sbjct: 62  HRQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPTLGRKTSASARKWVES 121

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++                   S++ +PL         A+I+G E  G+  +    A
Sbjct: 122 ERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVIMGNEHSGVEEELLSLA 181

Query: 249 TSMAHLHMPGIIKALNVSN 267
               ++ M G+I++ NVS 
Sbjct: 182 DGQLYIPMYGMIQSFNVSV 200


>gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 247

 Score = 67.9 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++  L+ GAEG GL  K    A  + ++   G +++LN   AAAV+++     
Sbjct: 189 YRFPERCVLLFGAEGPGLTRKALGIADDVVYITQYGSVRSLNAGAAAAVSMHAWMMQ 245


>gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
 gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
          Length = 228

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 10/228 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q S    +   ++L G H  SAAL    R    + +          
Sbjct: 11  SRDNAFVKDLRRLAQDSTAYRKQGRVWLEGDHLCSAALQRGVRPAIAVFSESFWPQAPAM 70

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A       V  +       I G E+           + +     +R     +VLD V D
Sbjct: 71  YAQAAS--KVIVLADGLFADISGLESPAPMG----FVVDAAPSQGLRPGVATVVLDRVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    +   K  +   +  + ++  GA     +        AL+++ 
Sbjct: 125 AGNVGSILRSASAFGFRQVAALKGGAALWAPKVLRAGMGA----HFALDLVEGLALEELG 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                 +  SS     L +       A +LG EG+G+ P  +  A+  
Sbjct: 181 VLDVPLLVTSSHEGDLLHRASLPWPCAWVLGHEGQGVSPALEAQASRR 228


>gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 181

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++SQ  +VL     P N G I R+  A +    I      P +   + ++     + +  
Sbjct: 13  KDSQNHVVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDI 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
               +L + L +           +       +   +      + G E  GL     ++ A
Sbjct: 73  RFYDHLDEFLAQCDGSLHVISKFADQVYSDKDYNDRQSH-YFLFGREDTGLPEPFMRQYA 131

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                + M    +++LNVSNA  + +Y     
Sbjct: 132 DRALRIPMNDEHVRSLNVSNAVCMIVYEALRQ 163


>gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii
           PG50]
 gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           leachii PG50]
          Length = 181

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 42/153 (27%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +    +++       +    +       +   II    +   +  +   SA+      
Sbjct: 1   MNKRKINIVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                       +  +   F             +    ND + L+ G E  G+      E
Sbjct: 61  CIRYDDWNDFITKHKNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   + M    ++LN++N   +A Y     
Sbjct: 121 HYNTTFRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|195330985|ref|XP_002032183.1| GM26423 [Drosophila sechellia]
 gi|194121126|gb|EDW43169.1| GM26423 [Drosophila sechellia]
          Length = 618

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                       K  L+LG E  G+             +   G++++LNV  A ++ ++ 
Sbjct: 550 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 609

Query: 276 TQNH 279
               
Sbjct: 610 YCKQ 613


>gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
 gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
          Length = 155

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V  +    +        +  +L +S     + +  +  
Sbjct: 1   MLNIVLLEPEKPSNTGNIGRTCVLTNTRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            ++ D   +      +   + + +     +    D   L+ G E  G+      +     
Sbjct: 61  DDI-DEFLEYIKGNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGIDKDLVSKHKEHS 119

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
             + M   I  +LN++N+  + L+       
Sbjct: 120 IKIPMNMEIDRSLNLANSCNIVLFEALRQIN 150


>gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 215

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 4/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++    HNIG ++R+A AF+   +    R   +    +       + H P 
Sbjct: 62  RRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHVHHHPD 121

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +           +          S   ++        ++  L+ G EG GLR +++E A 
Sbjct: 122 LESLRAYAREHSLAVVAVDNTQGSRPIER----TALPERCVLLFGQEGPGLRDESREGAD 177

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +   G  +++N   AA + ++
Sbjct: 178 LVVSIAQFGSTRSINAGVAAGIVMH 202


>gi|296138241|ref|YP_003645484.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026375|gb|ADG77145.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 232

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 5/190 (2%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-MVLDHVNDPHNIG 148
             P+   P    D +   +  +   A       +   D         + ++++    NIG
Sbjct: 38  GVPLPVDPRYDPDLLAQGDRRNVVDAYRYWTREAIVADLDSRRHPFEVAIENLGHDANIG 97

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R+A AF    +    R   +    +       ++H P         A   +      
Sbjct: 98  TVVRTANAFGARTVHIVGRRRWNRRGAMVTDRYQHVQHHPDAESFAAWCAEHDLPIVAVD 157

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               S   ++         +  L+ G EG G+    +  A +   +   G  +++NV  A
Sbjct: 158 NQPGSVPLERGS----LPRRCVLLFGQEGPGVSGDARRVAGTTVSIAQFGSTRSINVGVA 213

Query: 269 AAVALYITQN 278
           A +A++    
Sbjct: 214 AGIAMHAWVR 223


>gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
 gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
          Length = 244

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +++A++ G E +GL  +  +      H+       +LN++ A  +  Y  +
Sbjct: 107 TERVAILFGREDRGLTNEELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELR 158


>gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
 gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +      ++ K+  +A++ G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMVEPRECGVKSVEQAKDAPVAIVFGRERVGLTNEELQRCNYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVSYEIR 157


>gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 270

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG   V  ALN+P+  + +++   NA    LD           PV+      +  + G 
Sbjct: 37  IYGRKPVLEALNDPALSVAKVVVADNAGGGSLDEILAAARRLGTPVERASSTRVKWLAGN 96

Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
               QG+  +        L        R    + +LD V +P N+G ILR+A     DG+
Sbjct: 97  GKQDQGVVADVDAPRMTPLPNFLRQRGRRPTKVFLLDGVTNPGNVGMILRTATGAGFDGV 156

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +P    ++ K+++G     P +       A+  + + G++  GLS+ S++ L +
Sbjct: 157 ILPRAGTPHVGPLVIKASAGVAFQAPIVNAPTAKGAVDALRAAGYEIYGLSARSQRSLFR 216

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                +   +LG E  G+   T     +   + +   +++LNV
Sbjct: 217 TELAPRAVFVLGGETHGISVTT----DTDLRIPLHNGVESLNV 255


>gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 154

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R  V       I        +   + ++      H      
Sbjct: 1   MFNIVLFEPEIPPNTGNIIRLCVNTKSSLHIIKPMGFTLDEKPVRRAGLDY--HDMANVK 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATS 250
                          +   +++ S               I G E +GL  +    +   +
Sbjct: 59  VYDNYEECYAQLKNHRHFAVTTKSDSHYHHFKYEAGDVFIFGPETRGLPLERLNDKRNQA 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN  A+ ++       
Sbjct: 119 NIRVPMVASNRSMNLSNTVAIVIFEAWRQIN 149


>gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 167

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     L+ G+E  GL  +     +     + M    ++LN+S +  +A Y     
Sbjct: 94  YAARFEAGDHLVFGSEVTGLPAEVMAGGSGQSVTIPMLEERRSLNLSTSVGIATYEALRQ 153


>gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
 gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
          Length = 151

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR     + +  I      P+      +S    L+ +  +R  + 
Sbjct: 3   IALFQPDIPQNTGTILRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   + G + I L++  ++P  ++       L+LG E  G+       A +   + 
Sbjct: 63  LKFEQWRKTAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           M   +++LN++ AAAV        
Sbjct: 123 MQPGLRSLNIAMAAAVVTGEALRQ 146


>gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 150

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 3/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL +   P N G I R          +            L +S       +     
Sbjct: 1   MLHIVLFNPEIPQNTGNIGRLCAITESRLHLIHPLGFTITDKHLKRSGMDYWHSLDVHHH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            N        H+     +  +            ++   L+ G EG G       E     
Sbjct: 61  DNWDAFKASPHAPKRLWLFTTKA-DHSYWDVEYSNDDGLLFGNEGHGAPDWLHHELEGQR 119

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             +       ++LN+S +  +A Y      
Sbjct: 120 LTIPHKNDSLRSLNLSTSVGIAAYEALRQL 149


>gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
          Length = 168

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +    L  +       +   +            +    + G E  GL     +E    
Sbjct: 61  HKDSAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LN+SN AA+ +Y       
Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152


>gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis]
          Length = 215

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
                  A+++G EG G+  K         ++        +LNV+ AA++ ++  
Sbjct: 99  HPFRGNTAIMMGNEGSGMNEKQLGMCDHFVYIPQFSQGTASLNVNVAASIVMHHF 153


>gi|221115884|ref|XP_002157148.1| PREDICTED: similar to TAR RNA binding protein 1 [Hydra
           magnipapillata]
          Length = 937

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I   K  LILG E  G+     +       +   GII++LNV  + A+ ++     
Sbjct: 878 FIFPKKSVLILGNERTGIPVDLIQVLDECVEIPQVGIIRSLNVHISGAIMVWEYCKQ 934


>gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895]
 gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895]
          Length = 397

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 51/268 (19%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG +++  AL +  R+ F  L     L              V++     ++ +      
Sbjct: 119 IYGRNSILLALQSNRREYFVRLLHSGNLDPQIAKLAGQLGIKVQSAQRHQLNMMTNNAVH 178

Query: 111 H-------------------------------QGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +                               Q     TA  +     A +   + + LD
Sbjct: 179 NGLVLEAKPLYPQEINALGAVDHEAGTFELIDQWSNNGTAQKVPFLQSAKKRYPVGLYLD 238

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---------------L 184
            V DPHN+GAILRSA     D +  + R S   SA ++K++SGA                
Sbjct: 239 EVVDPHNVGAILRSAYFLGADFVAVSHRNSAPLSAAVSKTSSGALEVLPIYSVDKPLQFF 298

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E            +           +       + +    ++  + L++G EG G+R   
Sbjct: 299 ERSRDEHDWVFVASHLTQGPGISSHVKNRVLPIEDMADLAQSSPVMLVVGNEGTGIRSNL 358

Query: 245 QETATSMAHLHMPGI-----IKALNVSN 267
           Q+ +     +          + +LNVS 
Sbjct: 359 QQRSDFFVQVPFGRADEPQLVDSLNVSV 386


>gi|330840305|ref|XP_003292158.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
 gi|325077613|gb|EGC31314.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
          Length = 310

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N+KIAL+ G E  G+  + +  A    +L M G++++ NVS + A+ L   +  
Sbjct: 207 NEKIALVFGNETVGVSEEMKSLADRRFYLPMIGMVQSFNVSVSVAMTLAYLKMQ 260


>gi|319948186|ref|ZP_08022346.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319438170|gb|EFV93130.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 133

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A I G E  G+       A     + + G  ++LN+  AA++ L+ +  
Sbjct: 78  PTAWIFGNEAHGVPADLAAAADLRVRIPIRGRAESLNIVTAASICLHTSSR 128


>gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 302

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 4/143 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V++   + HN  AILR+A A     +         ++         A E +      
Sbjct: 5   LVIVVERCTNDHNYSAILRTAEALGVQHVYIIS----PKTINSTLVDEAATEWLTVHEFD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  + ++ + S   +              E    K+A++ G E  G   +    A    +
Sbjct: 61  DTKECIETLRSENREIWVTDLSQVASCLTEEGIQKVAIVFGTEAVGCTAEMLNAADLRVY 120

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           L + G   +LN+S A A+ ++  
Sbjct: 121 LPLRGFADSLNLSVATALVVHQM 143


>gi|124808939|ref|XP_001348447.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
 gi|23497341|gb|AAN36886.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
          Length = 2779

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 1/190 (0%)

Query: 91   FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              ++ +  +  +    K      +           L+  + + L+++   ++   N+  +
Sbjct: 2588 IILENILEKNKNNYQKKFDPISNIIEIHNEFRKNYLNNKKKNDLIVIASLIDKLPNLAGL 2647

Query: 151  LRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
             R+   F+   + I               S +    +I  ++ SN+ + + K        
Sbjct: 2648 CRTCEIFNVKKLLIDNINIIKDYQFQKISSTANKWMNIKELKKSNIINYIIKKKKKYSII 2707

Query: 210  IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                + + + L   +   K  LILG E +GL             +   GII++LNV  +A
Sbjct: 2708 GLEQTHNSQKLNHFVFPKKCILILGDEKEGLPSSILMFLHHCIEIPGQGIIRSLNVHVSA 2767

Query: 270  AVALYITQNH 279
            A+ +Y     
Sbjct: 2768 AITIYEYFKQ 2777


>gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 153

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    +        +   + ++       +    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTNSTLHLIKPMGFKIDDKQVKRAGLDYWSELKLEM 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  + ++K                   ++    +   ++ G E  G+  +    +   
Sbjct: 61  HESYEEFMKKYGDKRIFLATTHG--GVHYDEVSFKEGDFIMFGRESSGVPEEVH-NSHEG 117

Query: 252 AHLHMPGI-IKALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 118 IRVPMIKTSTRSLNLSNTVAIVAYEALRQI 147


>gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65]
 gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65]
          Length = 253

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +  +     + K +E   +  K+AL+LG E  GL            H+       +L
Sbjct: 89  HLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRERTGLTNDELAMCQVHIHIPANPDYASL 148

Query: 264 NVSNAAAVALYITQ 277
           NV+ AA V  Y  +
Sbjct: 149 NVAAAAQVLCYEVR 162


>gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
 gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
          Length = 256

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+I G E +GL       A     +       +LN++ A A+  Y  + 
Sbjct: 113 AIIFGPEDRGLSNSELNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQ 161


>gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40]
 gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40]
          Length = 267

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E    ++A++ G E +GL  +  +      H+       +LN++
Sbjct: 92  PWPLLTPRECGDKAWAEAGKGEVAIVFGREDRGLTNEELQKCHYHVHIPSNPDYSSLNIA 151

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 152 AAIQVLCYEIR 162


>gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio
           bacteriovorus HD100]
          Length = 297

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 10/265 (3%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVH 55
           M   + + S +  S +     + +             +   H  +   +      + G H
Sbjct: 1   MKKNNSRPSGRNNSQRPQQGGRPQHGRPQGAGRPQGGRPQAHAPRENQIPRDWRVVIGTH 60

Query: 56  TVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
            ++  L    +++      +        R   +  L +   V+      ++K    +   
Sbjct: 61  AINEVLKVRPKQVKGFWLRQGFENSGDLRDMNELALKNHIKVELKAEAALEKFGPSQQGA 120

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                        +L+ +  S  +++LD + DPHN+GAILR++      G++  +  +  
Sbjct: 121 AIFVDGAPEFDMASLEGLDKSM-VLILDGIEDPHNLGAILRTSWLVGAQGVLIPEDRAVG 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + K A G +EH+P    +N  +  +++   G+   GLS   K+ + +    DK+  
Sbjct: 180 LTPTVHKVACGGVEHVPVEETTNFANYAEELKKQGYWIYGLSPRGKRSIFELELPDKVVW 239

Query: 232 ILGAEGKGLRPKTQETATSMAHLHM 256
            +G+E KG+R  T+     +  +  
Sbjct: 240 AIGSEDKGMRVTTERLCDELVFIPQ 264


>gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 269

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 5/245 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N    +   S  ++           + G  T+   L     ++  L   +  LA L    
Sbjct: 11  NDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGIL 70

Query: 86  -NLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +P   PV       +D + G      V        A      L     S  L++ +  
Sbjct: 71  SEVPEGVPVYVAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELS 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           N  +       +A   +   ++      P     +  S+  AL        +        
Sbjct: 131 NHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQGGTGADLIAAA 190

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +              PL      +++AL++GAEG GL  +    A     + M     
Sbjct: 191 EAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARA-RPVRIAMTEGFD 249

Query: 262 ALNVS 266
           ++NV+
Sbjct: 250 SVNVA 254


>gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
 gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
          Length = 240

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              L +  +   +       IA++ G E  GL  +          +       +LN++ A
Sbjct: 87  PWLLKTARECAEQSVQHQGNIAIVFGRERSGLTNEELAQCQYHVTIPTEAAFSSLNLAQA 146

Query: 269 AAVALYITQ 277
             +  Y  +
Sbjct: 147 VQILTYEMR 155


>gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
 gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
          Length = 253

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K ALI G E +GL  +    A     +       +LN++ A AV +Y    
Sbjct: 111 KGALIFGPEDRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQ 161


>gi|195502550|ref|XP_002098273.1| GE10291 [Drosophila yakuba]
 gi|194184374|gb|EDW97985.1| GE10291 [Drosophila yakuba]
          Length = 1138

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV  A ++ ++ 
Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129

Query: 276  TQNH 279
                
Sbjct: 1130 YCKQ 1133


>gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 172

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+          N+G +LR+  A      +    + P   A        +  H 
Sbjct: 21  HSCWDHLIAAPLWPKYGVNLGTLLRTCDAVGACLAVPRLPWVPEALAQGNTLRRPSCVHW 80

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               +    D  +   S            +          +  ++LG E  G+ P+  + 
Sbjct: 81  VGRDVGAWLDGHRATGSMVVAVELTDESVRLADLPV-ARQRTVMLLGHEQSGVPPEGLDR 139

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G   +LNV+ A ++ LY
Sbjct: 140 ADLAVEIPMVGTGHSLNVAVAGSLVLY 166


>gi|70936152|ref|XP_739062.1| RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56515769|emb|CAH86833.1| RNA methyltransferase, putative [Plasmodium chabaudi chabaudi]
          Length = 224

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 2/179 (1%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +D +   +  +                  +  + L+ LD +   +N+G IL  A + + D
Sbjct: 45  LDSLKFMKDKNYDSVAIVKMPNIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNID 104

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKP 219
            I          +  +    SG    IPY   S          +         +  + + 
Sbjct: 105 FIFYIHNTVDPYNHQVMDITSGKHLFIPYSVGSYNELNQFCEQNNLVPIVAHTNGMTPQS 164

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + + I N  + LILG E  G        A     L M  +  +LNVS AA + ++  +N
Sbjct: 165 ILKNITNQGVCLILGNESTGPHKDIFSFA-KPVCLPMHEMTNSLNVSVAAGILIHYLKN 222


>gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 202

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 78/203 (38%), Gaps = 7/203 (3%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           + + +        V  V  + ++K+   ++  + +A+  +       D + + +L++ L+
Sbjct: 7   KNNVEKYQKVNVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFLDSKRLVI-LE 65

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ +P N+G I+R+  +F  D + +       ++   +K A        Y   +      
Sbjct: 66  NIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAI--FMANIYFLKNISDFFK 123

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                    +            + I      +I G EGKG+  K  + A    ++ +   
Sbjct: 124 FGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--N 181

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
            ++LN+++A A+  +       K
Sbjct: 182 FESLNIASANAIFCHFF--QLKK 202


>gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
 gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2137]
 gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4000]
 gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0017]
 gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0027]
 gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2141]
 gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4244]
 gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0012]
 gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0031]
 gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0043]
 gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0312]
 gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0645]
 gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1302]
 gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1341]
 gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1346]
 gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309B]
 gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309A]
 gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62]
 gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1467]
          Length = 168

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L   L  +       +   +            +    + G E  GL     +E    
Sbjct: 61  HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LN+SN AA+ +Y       
Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152


>gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)]
          Length = 163

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    DP N G I RS V F+    +              ++     +H+   + ++ 
Sbjct: 7   VVLYRPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-----PLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
            D +++        +     +         E    + +I L+ G E  GL  +   +   
Sbjct: 67  DDFIKQNQIDENLFLFTKKANNYLSNIDFKEYLDHDQRIYLVFGQETNGLPDQLLNKYQD 126

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++  + M   I++ N++N+   ALY     
Sbjct: 127 NLVKIPMHNAIRSFNLANSVICALYELSRQ 156


>gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
 gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
          Length = 254

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL     E    +  +       +LN++ A  V  Y   +H
Sbjct: 118 VALVFGNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSH 168


>gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299]
 gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299]
          Length = 411

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYIT 276
            +K+A++ G E  G   +  E+A +  +L + G   +LN+S AAA+    L+  
Sbjct: 181 PEKLAIVFGTESVGCTREALESADARVYLPLRGFADSLNLSVAAALCIQTLFHL 234


>gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine
           microorganism HF4000_APKG7N23]
          Length = 209

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +K ALI G E  GL             +        LN+S+A  + LY    
Sbjct: 82  REKPALIFGRENYGLYRGELALCEVTITIPTNPKFPILNLSHAVGIVLYEIYR 134


>gi|118376426|ref|XP_001021395.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89303162|gb|EAS01150.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 252

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQ 277
                    ++G EG GL    ++      ++        +LNVS AA++  +   
Sbjct: 128 HPFQGDTVFLMGNEGAGLIEAHKKICDHFVYIPQYTNKTASLNVSCAASIIFHHFA 183


>gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 274

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%)

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H         +   + P E   +N + AL+ G E  G+     +   +  H+       +
Sbjct: 101 HLPWPMLTPRALGERLPRECAPENARAALVFGREDSGMTNGELQRCHAHVHIPTNPDFSS 160

Query: 263 LNVSNAAAVALYITQ 277
           LN++ A  V  Y  +
Sbjct: 161 LNLAAAVQVLAYECR 175


>gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 154

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++        N GA +R A        +     +  +     K     L++     +
Sbjct: 1   MLHVIFFEPRIAGNTGAAIRLAACTGATLHVVEP--TVFDLDNDTKLKRAGLDYHDLAHL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
               D    +          +  +   L Q    D   L+ G E  GL  +  +    TS
Sbjct: 59  ERHPDLDDCLAHVPGNIYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTS 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+S +AA+ LY      
Sbjct: 119 RVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148


>gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
 gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
          Length = 318

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL     E    +AH+       +LN++ A  V  Y  +
Sbjct: 180 IALVFGNERTGLSNADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELR 228


>gi|241123159|ref|XP_002403800.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
 gi|215493536|gb|EEC03177.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
          Length = 316

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E +GL  +  +       +   G+I++LNV  + A  ++     
Sbjct: 255 HDYRFPKKTLLLLGNEKEGLPVELIQLLDVCVEIPQRGVIRSLNVHVSGASWIWEYAKQ 313


>gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 257

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +     +   LE    N ++AL+ G E  GL  +  +      H+       +LN+
Sbjct: 87  PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 146

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 147 AAAVQVLTYEVR 158


>gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
 gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
          Length = 257

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +     +   LE    N ++AL+ G E  GL  +  +      H+       +LN+
Sbjct: 87  PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 146

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 147 AAAVQVLTYEVR 158


>gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2]
          Length = 251

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +     +   LE    N ++AL+ G E  GL  +  +      H+       +LN+
Sbjct: 81  PWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 140

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 141 AAAVQVLTYEVR 152


>gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 251

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E  GL  +         H+       +LN++ A  +  Y  +
Sbjct: 110 IAIVFGREHAGLTNEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELR 158


>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior]
          Length = 438

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 229 IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + L++G E +G+        +    +  ++ +   I +LNV  A  +  +  +  F
Sbjct: 375 VVLVIGGETEGISLESCKLLRSRNCTRVNIPLTNGIDSLNVGVAVGIVTFEMKRQF 430



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 8/227 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S     Y  L  + +    +    +  +   +   + L G   +  A+           +
Sbjct: 93  STTKPKYIALDADDKLISSLMIDIKTKKKREKNRQMLLEGFRLIEDAIQAGIVAKVIFFS 152

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
             + +  L     LP    +  +P +TI            + +   P +     A     
Sbjct: 153 RLSDVLPLS----LPKEVKLYKIPYRTIQLWSNLITSPGIIGIFEIPDVDTKEPAENAIP 208

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D++ +P N+G I+R+A A  C+ ++  K         + +SA GA   +P     
Sbjct: 209 LTIICDNIREPGNLGTIVRAAAAVGCEKLLLMKGCVDLWEPKVLRSAIGAHFRLPIFTSI 268

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +  +    +       +  ++ + + +  + K +        EG  +
Sbjct: 269 SWDEIPTLISDESAIFLADNNIAYENVLTDFKMNPDI----NEGSSI 311


>gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 184

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 21  IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 80

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K        +   +D     E          + G E  GL  +  +E A     +
Sbjct: 81  ADFMSKNQQGRLHLVTKFADKTYSDEVYDDGKDHYFMFGREDTGLPEEFMREHAEKAIRI 140

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 141 PMNDEHVRSLNVSNTVCMIVYEALRQ 166


>gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica]
          Length = 259

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   Q  ++  +A++ G E  GL  +  +      ++       +LN++ 
Sbjct: 106 WPMVEPRECGERSVQAAEHVPVAIVFGRERVGLTNEELQKCHFHLNIPTNPEYSSLNLAM 165

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 166 AVQLVSYEIR 175


>gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group]
 gi|113533740|dbj|BAF06123.1| Os01g0742000 [Oryza sativa Japonica Group]
          Length = 163

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 30/81 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP----------------------GI----- 259
           +   L+LG+EG GLRP  + + T +  +                         G      
Sbjct: 67  EPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSGNQDMKS 126

Query: 260 ---IKALNVSNAAAVALYITQ 277
              +++LNVS AA V LY   
Sbjct: 127 FLAVESLNVSVAAGVLLYHLA 147


>gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
 gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
          Length = 258

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V +Y  +
Sbjct: 111 VALVFGREYAGLTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 159


>gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii]
          Length = 257

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V +Y  +
Sbjct: 110 VALVFGREYAGLTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 158


>gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++AL+LG E  GL  +  E    + ++       +LN+  A  V  Y  +
Sbjct: 119 RVALVLGNERFGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECR 168


>gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
 gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
          Length = 620

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 92/303 (30%), Gaps = 71/303 (23%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---------LARLDWDANLPHPFPV 93
               +   LYGV  V AAL    RK+ +     +          L R            V
Sbjct: 237 RDTLQGEALYGVFPVLAALRAKRRKVHRAFILSSMDLSKRKDAGLVRQVEALCSEAGVEV 296

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVND 143
                  ++ +            E  P                       + + LD V D
Sbjct: 297 VRTGRHELNLMSYDRPHQLAEMDEFPPADEVIAAAAGAVHGGAAGTAAPPVWLALDEVVD 356

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQK 201
           P N+GA++RSA      G++   R     SAV++K+++GALE   +   R    T    +
Sbjct: 357 PQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCRNLPRTLMDAR 416

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----- 256
                      +    + + + + +    L+LG+EG GLR   +   + +  + M     
Sbjct: 417 DRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGLVRVDMAPPTT 476

Query: 257 ---------------------------------------------PGIIKALNVSNAAAV 271
                                                         G++ +LNVS A  +
Sbjct: 477 ARAGRGISIPSSADDADAAVATNLRQPLPPSPPLPRQQQPQHAVLRGLVDSLNVSVATGI 536

Query: 272 ALY 274
            L+
Sbjct: 537 LLH 539


>gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 10/238 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVP 97
           H      + L G H +  A+   +  +  +     A       L  D        +  VP
Sbjct: 12  HRQSGTAVLLDGFHALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALLTEVP 71

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             T   +V +       AL   P  +  L+ +  +     +  ++ P N+G         
Sbjct: 72  HATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAVIRLA 131

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G          +         GA  H                       +       
Sbjct: 132 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTAGELPPGPVFALDPEG 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +      D   L  G+E  GL P+ +  A  +  L M  ++ + N++ + A+ LY 
Sbjct: 186 EDIRGTKLPDDALLAFGSERSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYH 243


>gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 267

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102
           + L G H +  AL    +   +   T +  A L     L           +  V P+T+ 
Sbjct: 26  VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 83

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +++ +    +  AL   P     LD   A      +++LD+  +  N+GA++R A  F  
Sbjct: 84  ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 143

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+ITT    P     +   A                             + +       
Sbjct: 144 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 194

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +      D   L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L+ 
Sbjct: 195 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 250


>gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 249

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 10/238 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVP 97
           H      + L G H +  A+   +  +  +     A       L  D        +  VP
Sbjct: 9   HRQSGTAVLLDGFHALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALLTEVP 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             T   +V +       AL   P  +  L+ +  +     +  ++ P N+G         
Sbjct: 69  HATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAVIRLA 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G          +         GA  H                       +       
Sbjct: 129 AGFGATGVVTTGTLDPWHPTVVRGGAGLHFATAVER------LTAGELPPGPVFALDPEG 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +      D   L  G+E  GL P+ +  A  +  L M  ++ + N++ + A+ LY 
Sbjct: 183 EDIRGTKLPDDALLAFGSERSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYH 240


>gi|163791249|ref|ZP_02185664.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
 gi|159873453|gb|EDP67542.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
          Length = 132

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI   K+E++ + K  H                     +   +     + G H +  A
Sbjct: 1   MELILSTKNERVKNWKKLH-------------------SKKGRQKAGTYLIEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           L N +  I +++ ++          +      + T   + + 
Sbjct: 42  LKNHAD-ILEMMISEEIAFEDIPQFDEEKQVEISTEIAKVLS 82


>gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 268

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102
           + L G H +  AL    +   +   T +  A L     L           +  V P+T+ 
Sbjct: 27  VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 84

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +++ +    +  AL   P     LD   A      +++LD+  +  N+GA++R A  F  
Sbjct: 85  ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 144

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+ITT    P     +   A                             + +       
Sbjct: 145 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 195

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +      D   L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L+ 
Sbjct: 196 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 251


>gi|195145142|ref|XP_002013555.1| GL24204 [Drosophila persimilis]
 gi|194102498|gb|EDW24541.1| GL24204 [Drosophila persimilis]
          Length = 883

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                       K  L+LG E  G+             +   G++++LNV    ++ ++ 
Sbjct: 817 HSVSFANFKFPKKCVLLLGHEKHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWE 876

Query: 276 TQNH 279
               
Sbjct: 877 YCKQ 880


>gi|194911129|ref|XP_001982293.1| GG11125 [Drosophila erecta]
 gi|190656931|gb|EDV54163.1| GG11125 [Drosophila erecta]
          Length = 1138

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV  A ++ ++ 
Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129

Query: 276  TQNH 279
                
Sbjct: 1130 YCKQ 1133


>gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 246

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 14/220 (6%)

Query: 58  SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
              L N    + ++       +N   ++  +    +   +        + I         
Sbjct: 22  IELLENKPELVMRVYLKSNSYQNKGVKIIENLCQQNKIELIESD----NTINKLAKKDNC 77

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            A+      +  L+   +  L+    +  D  N+G I+R+ + F+   +   +       
Sbjct: 78  FAIAIIKKYTMDLEDANHVVLV----NPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFD 133

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +++ GAL +I +   ++  + L K        + L             N    L+ 
Sbjct: 134 PRVIRASMGALFNINFEYFNSFDEYLTKYPEREVYPLMLKGAKNIHQITAANNKHS-LVF 192

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G E  GL     +       +     I +LN+S A  + L
Sbjct: 193 GNESSGLPDDYLKYG-QSVFIPHSDKIDSLNLSMALGITL 231


>gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 227

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            P+ +D   G                       R   L + +++  +  NIG ++R+A A
Sbjct: 43  DPELLD--AGDTRNVVDAYRYWKQSAIIADIDTRRHALHIAIENFENDSNIGTVVRTANA 100

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D +    R   +    +       L+H   +       A + +              
Sbjct: 101 FAVDTVHIVGRRRWNRRGAMVTDRYQHLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPL 160

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +         ++  L+ G EG G+  + Q+ A     +   G  +++N   AA +A++  
Sbjct: 161 ET----AELPERCLLLFGQEGPGVTQEAQDAARMTVSIAQFGSTRSINAGVAAGIAMHAW 216

Query: 277 QNH 279
              
Sbjct: 217 IRQ 219


>gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTVPPQTID 102
           + L G H +  AL    +   +   T +  A L     L           +  V P+T+ 
Sbjct: 23  VLLDGFHALKHALR--FQADIRCAITSDRAAVLALADALAPDVRERIAELLTEVAPETLR 80

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +++ +    +  AL   P     LD   A      +++LD+  +  N+GA++R A  F  
Sbjct: 81  ELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRLAAGFGA 140

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+ITT    P     +   A                             + +       
Sbjct: 141 TGVITTGDLDPWHPNAVRAGAGLHYATAVAR---------LDPDDLPGGPLLVLDPEGDD 191

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +      D   L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L+ 
Sbjct: 192 IRTVALPDDALLVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFH 247


>gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 316

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 94/291 (32%), Gaps = 43/291 (14%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            + D    +L   +RD K      Q+         + + G   V+  L         LL 
Sbjct: 19  RIDDPDDDRLEP-YRDLKGGNGLRQRRGARD----VIVEGRVAVTTLLGTGLTVHSVLLD 73

Query: 74  TKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDA 128
               ALA    D  +    P+     + I + VG  A+H+G+               LD 
Sbjct: 74  DHQVALATEVVDRAVARRVPILVASRRVIAETVGF-ALHRGVVAHAERPPVQALEDFLDL 132

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----- 183
               +  +V + V D  N+GA+ R+A AF    ++     +   +    + ++G      
Sbjct: 133 WAPGETALVAEGVVDQENLGALGRNAAAFGACALVLDPTSADPRNRRSVRVSAGHLLTLP 192

Query: 184 ---------------------------LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                                                              + IG    +
Sbjct: 193 LVRATPWPSALALLARSQVRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHA 252

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + P E ++   ++AL++G+EG GL P     A  +  + +   + ++N++ 
Sbjct: 253 RAPGEHDLPRPRVALLVGSEGHGLSPSALAYADVLVTIPIANGVDSVNLAT 303


>gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum]
          Length = 352

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  I ++ G E  GL  +  +    +  L M G  ++LN+S A  +  Y
Sbjct: 279 HSPICVVFGNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSY 327


>gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 154

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R       D  +      P +SA + ++      H      
Sbjct: 1   MFTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDY--HEFARVS 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + + A       G +   L++  +   +Q         + G E +GL  +  +      
Sbjct: 59  VHESYAECLAALAGRRIFALTTKGRTRPDQVSFQAGDVFLFGPETRGLPAEILDGLPQER 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    +++N+SN  AV ++     
Sbjct: 119 KIRLPMKSGSRSMNLSNTVAVIVFEAWRQ 147


>gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 154

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL   T      T+   + +    ++LN+SNAAAVA+Y     
Sbjct: 91  YRPGDVLMFGPEPTGLDAATLADPHITAQVRIPLLAGRRSLNLSNAAAVAVYEAWRQ 147


>gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
 gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
          Length = 239

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 KIA++ G E  GL  K  +       +       +LN++ A  +  Y  +N F
Sbjct: 102 MNHCQQKIAILFGQERCGLTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYELRNAF 160


>gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 257

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 178

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               +++VLD++   +NIG++ R+A AF    I      +      + K+A GA E + +
Sbjct: 21  PKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATESVEW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQE 246
             + ++T  ++ +     + I +         +     K    ALI G E +G++     
Sbjct: 81  EYVQDITTLVESLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFGNEVEGVQQSVVS 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   G   +LN++ +A + L+
Sbjct: 141 LCQRAIEIPQYGTKHSLNIAVSAGILLW 168


>gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 234

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+  +       
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKGKKIPYTISSKQINKISLKDKEYVIGVFRK 83

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                   +        ++LD +++  N+G I+RS +AF    +          +  + +
Sbjct: 84  EKSNFQEKNH-------IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL +  +K          L  +S   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNL-EDYKKNFPNNKIYSFLLDESSNELRDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +      +   ++    + +LN+  A ++A+Y ++
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYESK 232


>gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi]
 gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi]
          Length = 307

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNH 279
              +  IA++ G E  G+     + A +   + + G  ++ NV  + A+  Y       +
Sbjct: 187 NDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGFTESFNVHVSTALTTYYLNEKFRN 246

Query: 280 FAK 282
           + K
Sbjct: 247 YLK 249


>gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 320

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 313

Query: 279 H 279
            
Sbjct: 314 Q 314


>gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1342]
 gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0630]
          Length = 168

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 2/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIVLFEPQIPANTGNIARTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L   L  +       +   +            +    + G E  GL     +E    
Sbjct: 61  HKDLAAFLAHVAGKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LN+SN AA+ +Y       
Sbjct: 121 CIRIPMNDEHVRSLNLSNTAALIVYEALRQQN 152


>gi|171742048|ref|ZP_02917855.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283456825|ref|YP_003361389.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|171277662|gb|EDT45323.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283103459|gb|ADB10565.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 320

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 313

Query: 279 H 279
            
Sbjct: 314 Q 314


>gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
 gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +     +     ALI G E +GL  +  + A     +       ALN++ A AV  Y 
Sbjct: 97  HPRHGLGWLLETPSALIFGPEDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYE 156

Query: 276 TQN 278
              
Sbjct: 157 LSQ 159


>gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 304

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 238 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 297

Query: 279 H 279
            
Sbjct: 298 Q 298


>gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 246

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G E  GL        T    +        LN++ A  +  Y  + 
Sbjct: 109 PVALVFGRERFGLTNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRR 159


>gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 220

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 6/186 (3%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +   P  +D   G                       R   L + +++  +  NIG ++R+
Sbjct: 33  EEYDPDLLDD--GDRRNVVDAYRWWRTEAIIADIDTRRHALHIAIENFENDSNIGTVVRT 90

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF+ D +    R   +    +       LEH P         A   +          S
Sbjct: 91  ANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPDTGSVMAYAAAHDLTVVAVDNTPGS 150

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +         ++  L+ G EG G+  + Q  A+    +   G  +++N   AA +A+
Sbjct: 151 VPLET----AELPERCLLLFGQEGPGVTAEAQAGASMTVSIAQFGSTRSINAGVAAGIAM 206

Query: 274 YITQNH 279
           +     
Sbjct: 207 HAWIRQ 212


>gi|167644668|ref|YP_001682331.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167347098|gb|ABZ69833.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 156

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N+GA +R          +      P     L ++A         I  ++ 
Sbjct: 3   LALFQPGIPQNVGAAIRLGACLGVGLDVIEPCSFPLNDKSLKRAALDYGPLTHMILHASW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L        + +  ++ +  P  +        L+ G E +G  P+  + A S   + 
Sbjct: 63  AAFLAAPQRREGRLLLFTTKATTPFHKFDFQAGDTLLFGNESRGAPPEVHDAAFSRLMIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +    +++N++  AA+AL      
Sbjct: 123 LRPEARSMNLATTAAMALGEALRQ 146


>gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 254

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++AL+LG E +GL     E  T +  +       +LNV+ A+ + LY 
Sbjct: 109 ERVALLLGPEDRGLNNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYE 157


>gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 249

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G E +GL  +  + A  +  LH      +LN+S+A A+ L+  Q 
Sbjct: 114 PVALVFGREDRGLTNEELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQR 164


>gi|21355819|ref|NP_651031.1| CG18596 [Drosophila melanogaster]
 gi|17862774|gb|AAL39864.1| LP02352p [Drosophila melanogaster]
 gi|23176042|gb|AAF55981.2| CG18596 [Drosophila melanogaster]
 gi|220960120|gb|ACL92596.1| CG18596-PA [synthetic construct]
          Length = 1136

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV  A ++ ++ 
Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129

Query: 276  TQNH 279
                
Sbjct: 1130 YCKQ 1133


>gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB]
 gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB]
          Length = 263

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +AL+ G E  GL         ++  +      ++LN+S+A  +  Y  
Sbjct: 126 VALLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYEI 173


>gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
 gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 257

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++A++ G E  GL     +    +  +      ++LN++ AA V  Y   
Sbjct: 112 TQRVAILFGPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYELW 163


>gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
 gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens ATCC 13124]
 gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
          Length = 153

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    I        +   L ++       +    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  D ++K            +  +   ++    +   ++ G E  G+       A   
Sbjct: 61  HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPEDVH-NAHHG 117

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147


>gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 249

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-- 276
            +    K + +A+I G E +GL       A    ++       +LN+S+A ++ LY    
Sbjct: 106 WILSFEKINNLAIIFGREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNK 165

Query: 277 --QNHFAK 282
             + +F K
Sbjct: 166 SSKRNFNK 173


>gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 227

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            P+ +D   G                       R   L + +++  +  NIG ++R+A A
Sbjct: 43  DPELLD--AGDRRNVVDAYRYWKQSAIIADIDTRRHALHIAIENFENDSNIGTVVRTANA 100

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D +    R   +    +       L+H   +       A + +              
Sbjct: 101 FAVDTVHIVGRRRWNRRGAMVTDRYQHLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPL 160

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +         ++  L+ G EG G+  + Q+ A     +   G  +++N   AA +A++  
Sbjct: 161 ET----AELPERCLLLFGQEGPGVTQEAQDAARMTVSIAQFGSTRSINAGVAAGIAMHAW 216

Query: 277 QNH 279
              
Sbjct: 217 IRQ 219


>gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
          Length = 243

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           GV      L +    + +++      +N       +    H  P+          I    
Sbjct: 15  GVFPTIELLEHKPDIVKRVVVHSSIEENRGYPKIKELCALHHIPIDVHD----ATINKLS 70

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                 A+         L    +  L+    +  D  N+G I+R+ + F    +   +  
Sbjct: 71  PKSNCYAIGVFKTFYEPLQKGNHIVLV----NPMDMGNMGTIMRTMLGFGYQDLAIIRPA 126

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
               +  + +S+ GAL  +      ++ + L++          L     K + Q      
Sbjct: 127 VDIFNPHVVRSSMGALFSLRIHYYESIDEYLKEFGDHQCYPFMLKG--AKNIHQVKPVTP 184

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +LI G E  GL             +     I +LN++ +  + L+    
Sbjct: 185 HSLIFGNESSGLDDIYMTYG-QSVFIPHTNAIDSLNLAQSVGIGLFHFSQ 233


>gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 155

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHM--PGIIKALNVSNAAAV 271
              +     +  +   ++ G E  GL              + M      ++LN++N+  +
Sbjct: 81  HGNQNYADIVFKNDDYIMFGRETAGLPKAIHARYPNKRFRIPMKNHPHARSLNLANSVNI 140

Query: 272 ALYITQNH 279
            LY     
Sbjct: 141 VLYEALRQ 148


>gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 271

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 5/233 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +       G   +S+ L++       LL     L  +        P  P+  VP + +D 
Sbjct: 30  RQHQFVAEGKTILSSLLHSKEFSTLSLLVVAARLLSIMPILKETKPTCPIYCVPQKIMDD 89

Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I G       L +     L      L  +    L+ VL  +++  ++GAI R+A AF+  
Sbjct: 90  IAGFHVHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFAST 149

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K           ++++GA   +PY R  ++   +  +    F+   LS  +   L
Sbjct: 150 GIILDKTCCDPLYRKSIRASAGAALSVPYTRGDDIESIITALSDANFELYTLSPSATCYL 209

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +        ALI G EG  L     + +     + M     ++N++  + + L
Sbjct: 210 KDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYGFDSINLATVSGLTL 261


>gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 182

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++SQ  +VL     P N G I R+  A +    I      P +   + ++     + +  
Sbjct: 13  KDSQNHVVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDI 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
               +L + L +           +           +      + G E  GL     ++ A
Sbjct: 73  RFYDHLDEFLAQCDGSLHVISKFADRVYSDEAYNDRQSH-YFLFGREDTGLPEPFMRQYA 131

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                + M    +++LNVSNA  + +Y     
Sbjct: 132 DRALRIPMNDEHVRSLNVSNAVCMIVYEALRQ 163


>gi|195572842|ref|XP_002104404.1| GD20941 [Drosophila simulans]
 gi|194200331|gb|EDX13907.1| GD20941 [Drosophila simulans]
          Length = 1138

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV  A ++ ++ 
Sbjct: 1070 HSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129

Query: 276  TQNH 279
                
Sbjct: 1130 YCKQ 1133


>gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102]
          Length = 556

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
                L+LG EG GL  + +  A     +        + +LNVS AA +  +
Sbjct: 470 QHPCVLVLGNEGHGLPRQVKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 521



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 19/116 (16%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTS----------QPENLFLYGVHTVSAALNNPSR 66
           +    + R  +R+   +Q    + R  +                 YG   V AAL    R
Sbjct: 189 NPQKQRSRIENREDDSIQDAVARPRRRAMLPMTIKYTTAASQFL-YGRSVVKAALQQGRR 247

Query: 67  KIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQ--TIDKIVGKEAVHQGL 114
           ++++L        R         +       PV  VP +   +   +     H G 
Sbjct: 248 QLYKLYVYGGENRRGFDDNDAIINLAKARGVPVTIVPNEDQRLMDKMSMGRPHNGF 303


>gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
 gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
          Length = 268

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 74/267 (27%), Gaps = 22/267 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANL 87
           K+     K R     +   L        AL N     F     +     A  ++     L
Sbjct: 6   KLSDLPAKQRDRKILK--ILE---LAEQALQNKQELPFDEFYLQGLFKIAKEKISISPAL 60

Query: 88  PHPFPVKTVPPQT-----IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLD 139
                 +TV  +      I+ +  +     G       L+ P L         +      
Sbjct: 61  LKDLQKETVLSKERVLFLINSLRHELYSITGSLPSEWDLIFPQLKNNSQRDCAVRPFFSG 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
                 NI A       F        ++   SE  V  +    A+            +  
Sbjct: 121 TAVYVENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQ-PRAIRSAMGTIELVPWEHC 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPG 258
              +      +        P+      +K  +++G+E  GL P+    AT+    + M G
Sbjct: 180 DLENLPKDLPVFALETGGTPIHSFRFPEKGIVMIGSEELGLSPQALRRATAGTVSIPMYG 239

Query: 259 IIKALNVSNAAAVALY---ITQNHFAK 282
              ++NV  A  + ++       H  +
Sbjct: 240 SKASINVGVAFGILMHAWIEAVRHTNE 266


>gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 262

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ALI G E +GL       A     +       +LN++ A AV  Y    
Sbjct: 110 ALIFGPEDRGLSNDELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQ 158


>gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 548

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
                L+LG EG GL  + +  A     +        + +LNVS AA +  +
Sbjct: 462 QHPCVLVLGNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 513



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 19/122 (15%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT----------SQPENLFLYGVHTVSAA 60
           +  S ++    + R  +R+   ++    + R            +       YG   V AA
Sbjct: 175 RPQSPQNPQKRRPRIENREDGTIEDAIARPRRRGMLPMTITYTTAASQFL-YGRSVVKAA 233

Query: 61  LNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQ--TIDKIVGKEAVHQ 112
           L    R++++L        R      +  +       PV  VP +   +   +     H 
Sbjct: 234 LQQGRRQLYKLYVYGGENRRGVDDNDVIINLAKARGVPVTIVPNEDQRLMDKMSMGRPHN 293

Query: 113 GL 114
           G 
Sbjct: 294 GF 295


>gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
 gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
          Length = 243

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A + G E  GL  +  +       +       +LN++ A     Y  +
Sbjct: 106 QHPVAFVFGRERTGLTNEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEAR 157


>gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator]
          Length = 1333

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  L+LG E  G+         +   +   G+I++LNV  AAA+ ++   + 
Sbjct: 1275 FEKKTILVLGNEKDGIPANFIPLFNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329


>gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b]
          Length = 257

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
 gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
          Length = 257

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 177

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +K ALI G E  G+  +  E       +   G   + N+  +A + L+   +   
Sbjct: 121 EKYALIFGNEVNGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILWDFFSKLN 175


>gi|194744594|ref|XP_001954778.1| GF18440 [Drosophila ananassae]
 gi|190627815|gb|EDV43339.1| GF18440 [Drosophila ananassae]
          Length = 1141

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                  +     K  L+LG E  G+             +   G +++LNV    ++ ++ 
Sbjct: 1072 HSTNFTEFKFPKKSILLLGHEKHGIPADLIGFLDYAVEIPQFGTVRSLNVHVTGSLFIWE 1131

Query: 276  T-QNHFAK 282
              + H AK
Sbjct: 1132 YCKQHLAK 1139


>gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 52/139 (37%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L +VL +++DPHN+ AI RS  AF    +      +         SAS       
Sbjct: 10  WRQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPVLGRKSSASARKWVDT 69

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +                 + + KPL         A+I+G E  G+ P+  E  
Sbjct: 70  VRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSGVAPELVELV 129

Query: 249 TSMAHLHMPGIIKALNVSN 267
               ++ M G+I++ NVS 
Sbjct: 130 DGEVYIPMYGMIQSFNVSV 148


>gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 237

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 17/232 (7%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + +    ++L T+  L +    +       +  V  + +   +       G+A     
Sbjct: 2   LKSGNSP-SKILVTEKWLIKNQNLSKQFDESLLTLVSEEVLASAIS-TVNPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---------- 170
              P          ++VLD + DP N+G + R+A+A   D I       P          
Sbjct: 60  SSIPNYQFNSKDDFILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLNQKVLRAST 119

Query: 171 ---SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                        +        ++  +                  S  + KP  +     
Sbjct: 120 GAVFNLPFKRYEGTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTK 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
              LILG EG+G+  K QE       +    ++++LNV+  A  + L   + 
Sbjct: 180 STVLILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL-ERKR 230


>gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
 gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
          Length = 257

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 110 VAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora]
          Length = 593

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH-MPGI--IKALNVSNAAAVA 272
            +   L+LG+EG+GL  + +  A    ++  M G   I +LNVS AA + 
Sbjct: 518 TNPCILLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLL 567



 Score = 44.4 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 9/117 (7%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
               E+  + +       R N R+    +S      +T+       YG   V AAL    
Sbjct: 239 SSTRERRETDRTPRRELFRDNDREETTPKSL--SIPYTTAASQFL-YGTSVVEAALQAAR 295

Query: 66  RKIFQLLATKNA-LARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           RK+++L     A   +L  DA +          +  V    +  +            
Sbjct: 296 RKLYKLYIYAGANREKLAKDAAIQKLAQRNKVEIVFVNEDGLKMMDKMSGSRPHNGY 352


>gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 240

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A + G E +GL  +  +      H+       +LN+  A  V  Y  +
Sbjct: 107 TAFVFGREDRGLTNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELR 155


>gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
 gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
          Length = 168

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            + G E  GL     ++       +      +++LN+SN+ A+ LY       
Sbjct: 100 FLFGNEAYGLPEVFMRKNPEKAIRIPQNDQHVRSLNLSNSVAIVLYEAMRQQN 152


>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 179

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K ++ A++ G E KG++ +    + ++  +   G   +LN+S +A V ++   +  
Sbjct: 121 KGERYAVVFGNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWDIFSKL 176


>gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
 gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
          Length = 241

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +      QE +   +AL+ G E  GL     +       +       +LN++
Sbjct: 87  PWPMLEPRECGVRAVQEGEQAPVALVFGRERVGLTNDELQKCHYHVAIPANPDYSSLNLA 146

Query: 267 NAAAVALYITQ 277
            A  +  Y  +
Sbjct: 147 MAVQILAYDVR 157


>gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
 gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
          Length = 249

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 223 EIKNDKIALILGAE------GKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYI 275
                  A ++G E      G GL  + +       ++   G    +LNVS AA++ ++ 
Sbjct: 120 HPFTGNTAFVMGNEARLDAQGHGLTEQQKAICDGFVYIRQYGPGTASLNVSVAASIVMHQ 179

Query: 276 TQ 277
             
Sbjct: 180 FA 181


>gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus GG]
 gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus Lc 705]
 gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 169

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189
               +VL     P N G I R+  A +    +       ++   L ++         I Y
Sbjct: 1   MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIVY 60

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
               +   A  K     +     +  +    +    +     + G E  GL     +E  
Sbjct: 61  HDSLDDFMATVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHE 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   ++ALN+SN AA+ +Y     
Sbjct: 121 DQCLRIPMTANVRALNLSNCAALVVYEALRQ 151


>gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
 gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
          Length = 247

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 27/72 (37%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +         ++      + +++ ++ G E +GL  +  E      H+       +LN+
Sbjct: 88  PWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGLLNEELELCNLHCHIPTHESYPSLNL 147

Query: 266 SNAAAVALYITQ 277
           + A  +  Y  +
Sbjct: 148 AMAVQIVAYEIR 159


>gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
 gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
          Length = 201

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD++ DP N+G I+R + +F  D +I   +     S    +S  GA+ +   I ++N
Sbjct: 61  VVFLDNLQDPGNVGTIIRLSKSFDIDTLI--VKNFDIYSPKCLRSTQGAIFNQNIILVNN 118

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                +  HS       + +     L     N K  +I G EG G+  +    +    ++
Sbjct: 119 NDLLKELQHSGFEIVTTVLNQESIELNNFNFNKKTVVIFGNEGSGIEKEIINNSNKKIYI 178

Query: 255 HMPGIIKALNVSNAAAVAL 273
            +    ++LNV+  AA+ L
Sbjct: 179 PIS--FESLNVATCAAIVL 195


>gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879]
          Length = 160

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I R  VA +    +       ++   L ++     +H+     +
Sbjct: 5   FHIVLVEPQIPQNTGNIGRLCVAANAMLHLIHPLGFSTKEKDLKRAGLDYWQHLKVYEWA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMA 252
           NL    Q            +   K    +        L  G E  GL     E+    + 
Sbjct: 65  NLESFWQTYTPDATHFFFSTKAKKLYF-EADLKHGAFLYFGREDAGLPLHILESFKNQIY 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   ++++N++ +A   LY     
Sbjct: 124 KIPMQKGVRSINLATSAGAVLYEAVRQ 150


>gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
 gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
          Length = 256

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN+  A  V  Y  +
Sbjct: 110 IALVFGREDSGLTNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVR 158


>gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 154

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++        N GA +R A        +     +  +     K     L++     +
Sbjct: 1   MLHVIFFEPRIAGNTGAAIRLAACTGATLHVVEP--TVFDLDNDTKLKRAGLDYHDLAHL 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
               D    +     +    +  +   L Q    D   L+ G E  GL  +  +    TS
Sbjct: 59  ERHPDLDDCLAHVPGKLYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTS 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+S +AA+ LY      
Sbjct: 119 RVRIPMLDGRRSLNLSISAAIGLYYAWGQL 148


>gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
 gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
          Length = 253

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-----TQNH 279
           +K+A++ G E +GL     +    +  +       +LN++ +  + LY          
Sbjct: 110 EKVAIVFGPEDRGLDNDAIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAKAVRARQ 167


>gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
 gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
          Length = 169

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189
               +VL     P N G I R+  A +    +       ++   L ++         I Y
Sbjct: 1   MANHIVLFEPLIPANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIY 60

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
               +   A  K     +     +  +    +    +     + G E  GL     +E  
Sbjct: 61  HDSLDDFMATVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHE 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   ++ALN+SN AA+ +Y     
Sbjct: 121 DQCLRIPMTANVRALNLSNCAALVVYEALRQ 151


>gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
 gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
          Length = 304

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 238 PMETYHFPERCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 297

Query: 279 H 279
            
Sbjct: 298 Q 298


>gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 268

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++     
Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262


>gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 167

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L + + KM+   +      ++                + G E KGL  K  +E    
Sbjct: 61  YDSLDEFMGKMNGQLYLIS-KFAEKVYSDADFTTEGNHYFLFGREDKGLPEKFMREHPDK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
 gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
          Length = 235

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H          +  +     E K+   ALI G E  GL  +  E    +A++        
Sbjct: 84  HINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAGLPNEIVERCDIVAYIPTSKDYPI 143

Query: 263 LNVSNAAAVALYIT 276
           +N++ A ++ LY  
Sbjct: 144 MNLAQAVSIFLYEL 157


>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
          Length = 459

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 226 NDKIALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +I L++G E +G+                ++ +   +++LNV  AA +  +  +  F
Sbjct: 393 KKEIVLVIGGETEGVSLESCKLLHARNCVRVNIPLTNGVESLNVGVAAGIVTFEMKRQF 451



 Score = 43.7 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + R    +    +      +  N+ L G   +   +    +      +  + +  L    
Sbjct: 118 DDRLINSLMVNVKTRTKREKNNNMLLEGFRLIKDGIQAGIKPKAIFFSRLSDILPLS--- 174

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     +  VP +TI              +   P ++          L ++ D++ +P 
Sbjct: 175 -LSKEIKLYKVPYRTIQLWSNLTTSPGIFGIFEIPDVTAKQPVDDAIPLTIICDNIREPG 233

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           N+G ILR+A A  C+ ++  K  +    + + ++A GA   +P        
Sbjct: 234 NLGTILRAAAAVGCEKLLLMKGCTDLWDSKVLRTAVGAHFRVPIHTSVLWN 284


>gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
 gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
          Length = 161

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 2/145 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +   +VL     P N G I R          +            L ++       +    
Sbjct: 8   NPFSIVLFEPEIPPNTGNIARLCAGTDTQLHLIEPLGFSISDKHLKRAGLDYWPKVKLSV 67

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N  +  +   +   + +  S+     L +        L+LG E +GL     +     
Sbjct: 68  WKNWQEYKEN--AKPQRLVTTSAKRGTHLFEFKFLPGDHLVLGPETRGLPEWMFDEFKHA 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
            ++     +++LN+S +A + LY  
Sbjct: 126 VNIPTTDNVRSLNLSTSAGIILYQA 150


>gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198]
 gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198]
          Length = 154

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL     P N G I R  VA      +        +   L ++       +     
Sbjct: 1   MIHIVLIEPRIPQNTGNIGRLCVAAGARLHLIHPLGFSIDEKALKRAGMDYWRVLDLREW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            NL +  +    +  +   LS+ +KK   +     +  L  G E  G+     +  A  +
Sbjct: 61  KNLQEFWESH-PFDHKHFLLSTKAKKIYYEAPFCRECFLYFGREDAGIDSGILQTYAKQV 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+++N++ +  V LY     
Sbjct: 120 YKIPMQKNIRSINLATSVGVVLYEAIRQ 147


>gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
 gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
          Length = 180

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  VVLYQPQIPQNTGNIARTCAATNAPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            + ++         +   +D          N +   I G E KGL        A     +
Sbjct: 77  DEFMEATTGGKVHLVSKFADQTYSNVNYNDNLEHYFIFGREDKGLPEDFMRLHAEKAIRI 136

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162


>gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii ATCC 27126]
          Length = 254

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +    D  + L QE++   +AL+ G E  GL  +  +       +       +LN+
Sbjct: 86  HSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLTNEELQQCHFHMCIPANPEYSSLNL 145

Query: 266 SNAAAVALYITQ 277
           + A     Y  +
Sbjct: 146 AAAVQTLCYEIR 157


>gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 248

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 10/231 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKI 104
           + L G H +  A+   +     +   + A   L      D        +  VP      +
Sbjct: 18  VLLDGFHALKHAVRFGAEVPVAVAVDRGAALALAEELAPDVRDTLDALLTQVPESAYASL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           V +       AL   P  +  L+ + ++     +  +++P N+G         +  G   
Sbjct: 78  VPRPHPTGVAALAVRPSRAAHLEKLAHTPRTTPVVVLDNPRNLGNAGAVIRLAAGFGATG 137

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                  +         GA  H               +       +         +    
Sbjct: 138 VVTTGTLDPWHPTVVRGGAGLHFATAVER------LTVAELPPGPVFALDPEGDDIRGVK 191

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             D   L  G+E  GL P+ +  A  +  L M   + + N++ + A+ LY 
Sbjct: 192 LPDDAVLAFGSERSGLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLYH 242


>gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +AL+ G E  GL     +   ++ H+       +LN++ A  V  +   
Sbjct: 117 SRPVALLFGRERSGLTNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEVN 168


>gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1]
 gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1]
          Length = 179

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 1/152 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +     +++ +     +    I       +   II    +   +  +   SA        
Sbjct: 1   MERQVNIVLYEPEIAQNVAAIIRTCVATNAKLHIIEPLGFIFKKEEMNRASAGTFDLVEY 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
            +         +      F             +       + ++ G E  G+  +  +  
Sbjct: 61  QLYDDWEDFCEKNPSIDLFCISRYGEKPHSDFDFNSYQKPVFVMFGKESTGIPKQIIKDN 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   L M    +++NV+N   +  Y     
Sbjct: 121 YENTFRLPMSPQTRSINVANTVGIVTYEILRQ 152


>gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 261

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +    D  + L QE++   +AL+ G E  GL  +  +       +       +LN+
Sbjct: 86  HSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLTNEELQQCHFHMCIPANPEYSSLNL 145

Query: 266 SNAAAVALYITQ 277
           + A     Y  +
Sbjct: 146 AAAVQTLCYEIR 157


>gi|198452347|ref|XP_001358733.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
 gi|198131892|gb|EAL27876.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
          Length = 1165

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV    ++ ++ 
Sbjct: 1099 HSVSFANFKFPKKCVLLLGHEKHGIPADLIGFLDYAVEIPQFGVVRSLNVHVTGSLFIWE 1158

Query: 276  TQNH 279
                
Sbjct: 1159 YCKQ 1162


>gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia
           psychrerythraea 34H]
          Length = 273

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 23/71 (32%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +       + +  E     +AL+ G E  GL  +  +       +       +LN++
Sbjct: 103 PWPMLEPRGCGEKMIAEADEYPVALVFGRENSGLTNEELQLCHFHVQIPANPEYSSLNLA 162

Query: 267 NAAAVALYITQ 277
            A     Y  +
Sbjct: 163 MAVQTLSYEVR 173


>gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 174

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL       N G I+RS         I        +   L + A+G L       I
Sbjct: 1   MINIVLFQPEIGPNTGNIIRSCFVAGLKLHIIMPIAFDLDPKHLKRPAAGILLSEIEHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQET 247
                   + +             K   E +          I  + G E  G+  +  + 
Sbjct: 61  HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 120

Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M    ++LN++N   +  Y       
Sbjct: 121 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 155


>gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 244

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q     K+AL+ G E  GL  +         ++       +LN++ A  +A Y  +
Sbjct: 104 QHTLKGKVALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIR 159


>gi|330797178|ref|XP_003286639.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
 gi|325083387|gb|EGC36841.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
          Length = 1558

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +K  L+LG E  G+             +   G I++LNV  +A++ ++ 
Sbjct: 1495 FQFPEKCLLLLGQEQNGIPANYLTIVDYCVEIPQLGQIRSLNVHVSASIVIWE 1547


>gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 286

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 138 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 186


>gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12D]
 gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 294

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 145 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 193


>gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12J]
          Length = 282

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 133 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 181


>gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 174

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +VL       N G I+RS         I        E   L + A+G L       I
Sbjct: 1   MINIVLFQPEIGPNTGNIIRSCFVAGLKLHIIMPIAFDLEPKHLKRPAAGILLSEIEHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQET 247
                   + +             K   E +          I  + G E  G+  +  + 
Sbjct: 61  HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 120

Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M    ++LN++N   +  Y       
Sbjct: 121 NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 155


>gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
 gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
          Length = 150

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                        A     + G + + LSS  +K  ++    D++ L+ G E  GL  + 
Sbjct: 52  YWQHLEVHIYENTAEFYAKNAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSEEI 111

Query: 245 QETATSMA-HLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E        + M    I++LN++NA ++ +Y       
Sbjct: 112 VENNKEHLYTIPMFSEHIRSLNLANAVSIVVYEGIRRLK 150


>gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
          Length = 253

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + A++ G E  GL  +  E    + ++       +LN++ A  V  Y  +
Sbjct: 119 RAAVVFGNERFGLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEAR 168


>gi|70944707|ref|XP_742256.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521130|emb|CAH74309.1| hypothetical protein PC000031.00.0 [Plasmodium chabaudi chabaudi]
          Length = 867

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           + + L+++   ++   N+  + R+   F+   ++ +              S +    +I 
Sbjct: 720 KKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQFQKISSTANKWMNIQ 779

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            ++  ++   L K            ++  K L   I  +K  LILG E +GL        
Sbjct: 780 ELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPEKCILILGDEKEGLPSSILLLL 839

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI 275
                +   GII++LNV  +AA+ +Y 
Sbjct: 840 HHCVEIPGHGIIRSLNVHVSAAITIYE 866


>gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 238

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              N  IAL+ G EG GL  +  E    +  +        +N+++AAA+  Y    +
Sbjct: 102 MHVNGNIALLFGREGDGLNNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKN 158


>gi|241895125|ref|ZP_04782421.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871621|gb|EER75372.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 201

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +EH   I    + + L +     +          + L       K A + G E  GL 
Sbjct: 98  EHIEHHRIIDYPAIFEHLHQEGYTIYAVDNTPGYDPQSLYDMHFPAKSAFLFGEEKLGLA 157

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNH 279
                 A +M ++   G ++++NV  A  V    Y +Q+ 
Sbjct: 158 DDLINAADAMVYIPQYGSVRSINVGVAHGVIAAFYASQHQ 197


>gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     +VLD + D  N+ A+LR+  A     +                +         
Sbjct: 36  QRTRTFTVVLDRLEDSFNMAAVLRTCEAMGVQEVHVVINPEAPFLPNSRVAQGCDKWLDV 95

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  +                     +    L     + K+A++ G E  G+        
Sbjct: 96  KLYKTFAECREHLQERGFALYASAIREGATSLYSMRFDSKVAIVFGNERFGVSEDVLAGV 155

Query: 249 TSMAHLHMPGIIKALNVSNAAAVA 272
                + M G  +++N+S AA+  
Sbjct: 156 DGTFWIPMRGFSQSINISAAASAC 179


>gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 271

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 5/233 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +       G   +S+ L++       LL     L  +        P  P+  VP + +D 
Sbjct: 30  RQHQFIAEGKTILSSLLHSKEFSTLSLLVVAARLLSIMPILKETKPTCPIYCVPQKIMDD 89

Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I G       L +     L      L  +    L+ VL  +++  ++GAI R+A AF+  
Sbjct: 90  IAGFHVHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFAST 149

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K           +++SGA   +PY R  ++   +  + +  F+   LS  +   L
Sbjct: 150 GIILDKTSCDPLYRKSIRASSGAALSVPYTRGDDIESIITALSNANFKLYTLSPSATCYL 209

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +        ALI G EG  L     + +     + M     ++N++  + + L
Sbjct: 210 KDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYGFDSINLATVSGLTL 261


>gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 256

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  +      H+       +LN+  A  V  Y  +
Sbjct: 110 IALVFGREDSGLTNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVR 158


>gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + ++A++ G E +GL     E   ++  +       ++N++ + AV  Y    
Sbjct: 96  HGEVAVVFGQERRGLSDAELELCQAVCSIPTAPAYDSMNLAQSVAVLAYEIGR 148


>gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens
           Hrk 5]
          Length = 257

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++G E  GL  +       +  +       +LN S+AAA+  Y   N
Sbjct: 121 VVIGREDWGLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYELFN 168


>gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1]
 gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 250

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + E +  K+AL+ G E  GLR +  +      ++         N+S+A A+ LY+  
Sbjct: 104 FWKQMESQTGKVALVFGREDDGLRNEELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMY 163

Query: 278 N 278
            
Sbjct: 164 R 164


>gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 268

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++     
Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262


>gi|195391444|ref|XP_002054370.1| GJ24409 [Drosophila virilis]
 gi|194152456|gb|EDW67890.1| GJ24409 [Drosophila virilis]
          Length = 1161

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FA 281
                +K  L+LG E  G+             +   G++++LNV    ++ ++        
Sbjct: 1100 FKFPEKCILLLGHEKHGIPVDLIALLDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQYLN 1159

Query: 282  K 282
            K
Sbjct: 1160 K 1160


>gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
 gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
          Length = 232

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277
            K+AL+ G E  GL  +      ++  + M  ++++L+V++A  +AL   Y  +
Sbjct: 170 GKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERR 223


>gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 268

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++     
Sbjct: 203 MENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262


>gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 242

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECAEKFAVEGQKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501]
 gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501]
 gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 131 VALVFGREYAGLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVR 179


>gi|90023109|ref|YP_528936.1| tRNA/rRNA methyltransferase (SpoU) family protein [Saccharophagus
           degradans 2-40]
 gi|89952709|gb|ABD82724.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 161

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + ++++ +V    NIG ++R+A AF  + I    R   S           A        
Sbjct: 1   MKFVLLIFNVQSNTNIGQLIRTANAFGAEEICVIGRKKFSTYGNQ----KTASTTKFRHF 56

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                       +         ++  K + +         I+G EG G+     +     
Sbjct: 57  FQIDEAFEYYGQAGYDFVGVEITEQAKSINKMRFERDTLFIMGNEGDGIHENILKRCHYC 116

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
            ++   G   ++NV+ A  +  
Sbjct: 117 VYIPQYGTGASINVNTACGIIF 138


>gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrosomonas europaea ATCC 19718]
          Length = 246

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +AL+ G E  GL             +       +LN++ A  +  Y  +
Sbjct: 111 HHPVALLFGRESAGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELR 162


>gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115]
 gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti
           VCD115]
          Length = 148

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q        L+ G E +GL    ++       L  PG  ++LN++ AA VA +     
Sbjct: 86  YTQAGFQQGDYLLFGPESRGLPAWLRDAL-PKLKLPQPGGGRSLNLAVAAGVAAFEAGRQ 144

Query: 280 FA 281
             
Sbjct: 145 IK 146


>gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
 gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
          Length = 243

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +      ++ K   +A++ G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMVEPRECGVKSVEQSKESPVAIVFGRERVGLTNEELQKCQYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVSYEIR 157


>gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
 gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
          Length = 250

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E +GL     +      ++       +LN++ A  V  Y  +
Sbjct: 110 VAVLFGREDRGLTNDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELR 158


>gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 203

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  A +LGAE  GL P        +  + M     ++N+  A A+ LY  
Sbjct: 95  FRHPSCAAYVLGAERHGLSPAMLARCDHVVKIPMRF---SINLGMAGAIVLYDR 145


>gi|308234639|ref|ZP_07665376.1| RNA methyltransferase, TrmH family protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 268

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E      +  ++ GAEG GL  K  + A  + ++   G +++LN   AAAV+++     
Sbjct: 203 METYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 262


>gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 213

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 60  RRHPLHIAIENFENDMNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHDT 119

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I         Q +       I  S   +         ++  L+ G EG G+ P+ Q+ A 
Sbjct: 120 IADLISWANEQDLQVLAIDNIPGSVPLET----ATLPERCLLLFGQEGPGVTPEAQDAAV 175

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 176 MTLSIAQFGSTRSINAGVAAGIAMHTWIRQ 205


>gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
 gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
          Length = 243

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    + K   +A+I G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMVAPRECGEKSVMQAKTAPVAIIFGRERIGLTNEELQKCQYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVSYEIR 157


>gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102]
 gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 272

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
 gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
 gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha275]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha153]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 272

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
 gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
          Length = 153

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++        N GA +R A        +        E   L ++      +     +
Sbjct: 1   MLHVIFYQPRIAGNTGAAIRLAACTGATLHVVEPTVFDFEDTKLKRAGLD---YHDLAHL 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
               D      +   +    +  ++  L      D  AL+ G E  GL     +    TS
Sbjct: 58  QRHPDLDDCFAAIPGKIYAFTGHTEVMLPSVHFQDGDALMFGPEDTGLPVPVMDDPRVTS 117

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN++ +AAV LY      
Sbjct: 118 RVRIPMLEGRRSLNLAISAAVGLYFAWGQL 147


>gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4]
 gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 156

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGII--KALNVSNAAAVALYI 275
              +    D+  LI G E  GL      E       + M   I  ++LN+SN+ A+ +Y 
Sbjct: 86  YYHEVKYEDEAFLIFGKETTGLPQWLIDEYYEDCIRIPMHEKILWRSLNLSNSVAIIVYE 145

Query: 276 TQNHF 280
                
Sbjct: 146 ALKQL 150


>gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis
           alpha710]
 gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Neisseria meningitidis H44/76]
 gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           N1568]
 gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           OX99.30304]
 gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M6190]
 gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M13399]
 gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M0579]
 gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           ES14902]
 gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           CU385]
 gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           961-5945]
 gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240013]
 gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           G2136]
 gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           H44/76]
 gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240149]
 gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M04-240196]
 gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           NZ-05/33]
          Length = 271

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 292

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 159 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 211


>gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 289

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
                A  +      I     +   +         I        PL +        L++G
Sbjct: 156 PRHPRAQRSAMGCVDIVPWCRSSFEEMQTHTTSNKIVALETGGCPLHEFHFPAGGILVIG 215

Query: 235 AEGKGLRPKTQETATSM---AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +E  G+ P   E A+       +   G   +LNVS A  + L+   + F
Sbjct: 216 SEELGVSPALMEQASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQF 264


>gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 171

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274
               +    +     + G E  GL     +E       +      I++LN+SN AA+ +Y
Sbjct: 89  YHQADYTNTDHDYYFLFGKETTGLPEPFMKEHPDQALRIPQNDEHIRSLNLSNTAAIIIY 148

Query: 275 ITQNH 279
                
Sbjct: 149 EVLRQ 153


>gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 241

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVR 157


>gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
          Length = 155

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHM--PGIIKALNVSNAAAVALYI 275
                   +    + GAE KGL      +  ++   + M      + LN+SN+ AV LY 
Sbjct: 85  NYTDFKFEENDYFMFGAETKGLPDYIHQKYPSTRLRIPMIPKENARCLNLSNSVAVLLYE 144

Query: 276 TQNHFA 281
                 
Sbjct: 145 ALRQHN 150


>gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC
           73102]
          Length = 246

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P   E      ALI G E +GL  +    A     +       ALN++ A A+  Y    
Sbjct: 100 PWLLEEPEKPTALIFGREDRGLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQ 159


>gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 242

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157


>gi|224012188|ref|XP_002294747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969767|gb|EED88107.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 156

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274
           E      A+++G EG G+  K          +    G   +LNVS AA + L+
Sbjct: 89  EPFFTSAAIMMGNEGSGMSSKQMSLCDGFVRISQFGGGTASLNVSVAAGLVLH 141


>gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
          Length = 182

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164


>gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli EPECa14]
          Length = 245

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ AA V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVR 157


>gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101]
 gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens SM101]
          Length = 153

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    I        +   L ++       +    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  D ++K            +  +   ++    ++  ++ G E  G+       A   
Sbjct: 61  HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEEAFIMFGRESAGVPEDVH-NAHHG 117

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147


>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
 gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase
 gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
          Length = 531

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VLD + DP N+GAI+R+   F+ DG++ + + S   +   +KS+SGA E  
Sbjct: 368 NNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESF 427

Query: 188 PYIRISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
              R  ++   L+     G+            +     + Q   +    LILG EG GL+
Sbjct: 428 VINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLK 487

Query: 242 PKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274
           P   E       +      I +LNVS  + + ++
Sbjct: 488 PSVLEICNKTIKIVGGNYKIDSLNVSVTSGILIH 521


>gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155]
 gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155]
          Length = 233

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + +VL+++   HN  AILR+A AF    I   +  +   +      ++     I  
Sbjct: 39  RTEHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKA 98

Query: 190 IRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              S + + ++                       L++   ++ IAL  G E  GL     
Sbjct: 99  WNESKIDNTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTELTGLSEVAH 158

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E A  M ++ M G I++ NVS A+A++L   +N   +
Sbjct: 159 EMADYMTYIPMNGFIQSFNVSVASALSLSHLRNKMKR 195


>gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7002]
          Length = 250

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +   ALI G E  GL       A  +  +       +LN++ A AV  Y  +
Sbjct: 101 PWFLEDDQPSALIFGREDHGLSNSELNQAQRLVCIPTGDAYTSLNLAQAVAVCSYELR 158


>gi|91070320|gb|ABE11237.1| tRNA/rRNA methyltransferase [uncultured Prochlorococcus marinus
           clone HF10-88F10]
          Length = 90

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M G++++LNVS AA++ L+       
Sbjct: 1   MVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQRK 35


>gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 272

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 8/235 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +       G   V   L +P    R    LLA +     +   A      PV   P   +
Sbjct: 29  RQGRFVAEGE-VVLRVLLSPRARFRPESILLAPERLPGLMPLLAASGTAAPVYVAPRPVM 87

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             + G   +H+G+         P  D        LL+ L  + +  N+G + R+A AF  
Sbjct: 88  SALAGFP-IHRGVLAIGRGGPDPDPDALVPEGPALLLGLVGLANHDNVGGLFRNAAAFGA 146

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I              + ++G    +P+ R+ +    L   H  G   + L+   ++ 
Sbjct: 147 DAVILDAATCDPLYRKAIRVSAGTALTMPFGRVPDGEALLALCHRHGLVPVALTPAGEED 206

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +  L+LG EG GL       +     + M   + +LNV+ A AVAL+
Sbjct: 207 IAALPPLPRALLLLGTEGTGLPEALMARS-RRVRIAMAPGVDSLNVAAAGAVALH 260


>gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 290

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
 gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
          Length = 244

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 102 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 153


>gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
 gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
          Length = 289

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303]
 gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 249

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G E +GL  +  + A  +  LH      +LN+S+A A+ L+  Q 
Sbjct: 114 PVALVFGREDRGLTNEELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQR 164


>gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
 gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
          Length = 289

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia HI2424]
          Length = 289

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 TGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 269

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E     ++  L+ GAEG GL  K  E A  + ++   G ++++N   AAAV ++    
Sbjct: 204 PMETYRFPERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMHAWIA 263

Query: 279 H 279
            
Sbjct: 264 Q 264


>gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
 gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
          Length = 153

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    I        +   L ++       +    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  D ++K            +  +   ++    +   ++ G E  G+       A   
Sbjct: 61  HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPENVH-NAHHG 117

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 118 IKVPMINTTTRSLNLSNTVAIIAYEALRQI 147


>gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299]
 gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299]
          Length = 369

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                   + K   ++     K+AL+ G E  GL  +      +   +    +I++L+VS
Sbjct: 263 HGWKRRVYNPKNRNQKNRGRGKLALVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVS 322

Query: 267 NAAAVALYITQNHFA 281
           +AA + L     H A
Sbjct: 323 HAAVIILSQYYQHRA 337


>gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
 gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
          Length = 243

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A+I G E  GL  +  +      ++       +LN++ A  +  Y  +
Sbjct: 108 PVAIIFGRERVGLTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIR 157


>gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240355]
          Length = 271

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 259

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 110 VAFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 158


>gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa
           M23]
 gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 263

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 281

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 141 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 189


>gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
          Length = 252

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 112 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 160


>gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 287

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 138 VAFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 186


>gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
          Length = 263

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 263

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 123 VALLFGRERTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
 gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
          Length = 254

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +A++ G E  GL  +          +       +LN++ A  +  Y  
Sbjct: 110 VAILFGREDNGLSNEELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYEL 157


>gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 271

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11]
 gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 271

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 157

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + + ++ +VL     P+N GAI R+ VA   + I+        +   + ++     +H+ 
Sbjct: 1   MSDPRMKLVLVTPEIPYNTGAIGRTCVALELELILIKPYGFSLDEKAVRRAGQDYWKHVQ 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                     +   +              + +          L+ G E KGL        
Sbjct: 61  LCEYDTWQGFMDDRNPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLNGM 120

Query: 249 TSMA-HLHMPGI-IKALNVS-NAAAVALYITQN 278
                HL M    +++LN++  A AV  Y    
Sbjct: 121 DDRVFHLPMRNPLVRSLNLANVATAVI-YQAMR 152


>gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02]
 gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18]
 gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140]
 gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19]
 gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18]
 gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1]
 gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1]
 gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332]
 gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2]
 gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 271

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 138 EKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
 gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
          Length = 244

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 27/70 (38%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   +   +  +A++ G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMVEPRECGERCIKAAGHSPVAVVFGRERVGLTNEELQKCNYHLYIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +A Y  +
Sbjct: 148 AVQLASYEIR 157


>gi|302531148|ref|ZP_07283490.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302440043|gb|EFL11859.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 219

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG GL    Q  +  +  +   G  +++N   AA + ++     
Sbjct: 157 LPRNCLLLFGQEGPGLSEAAQTDSAKVVSIAQFGTTRSINAGVAAGIVMHAWIRQ 211


>gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 166

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D    ++L + L     P N G I R+ +AF  D  +         +  L ++     +
Sbjct: 1   MDKKIINKLSIALYEPRIPQNTGNIGRTCLAFDFDLHLILPLGFEINNKRLKRAGLDYWK 60

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +I      +     + ++                          +L+ G E  GL    +
Sbjct: 61  YINLELHESFAHYSKFINPSRIIGFSKEGGIPLSK--IEFQSNDSLLFGREDLGLPSHVK 118

Query: 246 ETATSMAHLHMPGI--------IKALNVSNAAAVALY 274
                MA + MPG         +++LN+S A  +A +
Sbjct: 119 NKCDFMATIPMPGKSNSKNDNGVRSLNLSVACGIASF 155


>gi|311113957|ref|YP_003985178.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
 gi|310945451|gb|ADP38155.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
          Length = 99

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E      +  ++ GAEG GL  K  + A  + ++   G +++LN   AAAV+++     
Sbjct: 34  METYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQ 93


>gi|296167821|ref|ZP_06850006.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897019|gb|EFG76640.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 218

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 156 LPRECLLVFGQEGPGITDDVRSGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 210


>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 248

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
           K+A++ G E KGL  +  +    +  +     + +LN+S A  V LY   +   AK
Sbjct: 110 KVAIVFGPEDKGLTNEETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAK 165


>gi|111022496|ref|YP_705468.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110822026|gb|ABG97310.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 230

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+  + ++ A     +   G  +++N   AA +A++     
Sbjct: 168 LPRDCVLLFGQEGPGVTDQAKKVAAMTVSIAQFGSTRSINAGVAAGIAMHAWVRQ 222


>gi|328791993|ref|XP_001123107.2| PREDICTED: hypothetical protein LOC727398 [Apis mellifera]
          Length = 1348

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L+LG E  G+         +   +   G+I++LNV  + A+ ++     
Sbjct: 1287 NMKFEKKTILVLGNEKNGIPANLIPLFDTCIEIPQAGVIRSLNVHVSGAICIWQYAKQ 1344


>gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 257

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++A++ G E +GL     E    +  +   G   +LN++ A  +  Y    
Sbjct: 118 RVAIVFGCEDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMK 168


>gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 247

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 169

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274
              A ++G EG+G+  K  ++  +   +    G   +LNV  AA++ L+
Sbjct: 105 KDTAFLMGNEGQGINEKHMKSCDAFVTIPQYGGGTASLNVYVAASIVLH 153


>gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 242

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  +  +    +  N  +A+I G E  GL  +  +      H+       +LN++ 
Sbjct: 88  WPQVTPRECGEKTIHQAINSPVAIIFGRERVGLTNEELQKCQYHLHIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLISYEIR 157


>gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena
           XCL-2]
 gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira
           crunogena XCL-2]
          Length = 268

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +A++ G E  GL     +    +AH+       +LN++ A  V +Y  
Sbjct: 122 VAILFGREDSGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYEL 169


>gi|184199838|ref|YP_001854045.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580068|dbj|BAG28539.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 239

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++  L+ G EG G+  +    A ++  +   G  +++N   AAAV ++     
Sbjct: 164 FDLPERCVLVFGQEGPGVSGELVAQADAVLAIEQFGSTRSINAGAAAAVTMHAWIRR 220


>gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans]
          Length = 584

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275
              +      L++GAE  GL+      A     +          + +LNVS AA++  Y 
Sbjct: 507 HCPVVEHPTILMMGAESSGLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYE 566

Query: 276 TQNH 279
               
Sbjct: 567 MLQR 570


>gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 265

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 121 VALLFGNETAGLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELR 169


>gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7]
 gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 308

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +     +   LE    N + AL+ G E  GL  +  +      H+       +LN+
Sbjct: 138 PWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNL 197

Query: 266 SNAAAVALYITQ 277
           + A  V  Y  +
Sbjct: 198 AAAVQVLTYEVR 209


>gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 154

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H       + +      H    + I  ++ + +   +    D   L+ G E  GL    
Sbjct: 52  YHDLAHVTVHASLTDLWNHLGERRVIAFTTHTDQSFAEVDYRDGDVLLFGQESTGLPDSV 111

Query: 245 QETATSMA--HLHMPGIIKALNVSNAAAVALYITQNH 279
            +         + M    ++LN++N+A++A+Y     
Sbjct: 112 VDDDHVDLSVRIPMLPSRRSLNLANSASIAIYEAWRQ 148


>gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
 gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
          Length = 175

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +  + G+E  GL     +    +  + M GI  +  V+ AA + L       
Sbjct: 105 WEAPFPRGLVFLFGSEDDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164


>gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 229

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +AL+ G E +GL  +    +  +  LH      +LN+S+A A+ L+  Q    
Sbjct: 94  VALVFGREDRGLSNEELLLSHRVVRLHTVDHYPSLNLSHAVAIVLHDLQRSRI 146


>gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
 gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 171 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 223


>gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
 gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
          Length = 254

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +      +   +       +LN+ +A  V  Y  +
Sbjct: 115 VALVFGNETVGLTNEEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECR 163


>gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
 gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++ G E  GL  +  E    +  +    +   +N+S+A AV LY   
Sbjct: 105 GNVGIVFGREDDGLTNEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYEIY 155


>gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301
 gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 182

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164


>gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
          Length = 227

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 161 PMETYCFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 220

Query: 279 H 279
            
Sbjct: 221 Q 221


>gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 183

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 8/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L +VL     P N G I R+  A      +        + A L ++     + +  
Sbjct: 17  QRKDLHVVLVTPKIPGNTGCIARTCAASRVPLHLVAPLGFSLDDAQLKRAGLDYWKSVCV 76

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQ 245
               +           G +   L + SK                 L+ GAE  GL     
Sbjct: 77  KVHDDWDAFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAETTGLPDAAM 136

Query: 246 ETATSM--AH-LHMPG-IIKALNVSNAAAVALYITQNHF 280
           E   +      + +    +++LN+S +  + +Y      
Sbjct: 137 EACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQL 175


>gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 134

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +    + G E +GL  +  +T        L M    +++N+SN  AV L+     
Sbjct: 71  FVEGDVFLFGPETRGLPAEILDTLPEGQKLRLPMKLGSRSMNLSNTVAVILFEAWRQ 127


>gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia
            vitripennis]
          Length = 1450

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +  L+LG E  G+             +   G+I++LNV   +A+ ++     
Sbjct: 1391 YPKQTVLVLGNEKNGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQ 1445


>gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
 gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 244

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIR 157


>gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114]
 gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114]
          Length = 295

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 162 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 214


>gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 248

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +AL+ G E  GL       A  +  +       +LN+S+A A+ L   Q 
Sbjct: 108 PNHVALVFGREDHGLHSSELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQR 160


>gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
 gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
          Length = 239

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 242

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRECGQKFAVEGQKHPVALVFGRERTGLTNDELQKCHFHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
 gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
          Length = 242

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRECGQKFAVEGQKHPVALVFGRERTGLTNDELQKCHFHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 256

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             D   L  G+E  GL    +  A  +  L M   + + N++ + A+ LY 
Sbjct: 200 LPDDAVLAFGSERSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLYH 250


>gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae]
          Length = 172

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H P 
Sbjct: 19  RRHCLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLMHHPT 78

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                     Q +              +         ++  L+ G EG G+  + Q+ A 
Sbjct: 79  TADVVAWAKQQGLTIVAIDNTPGCVPLET----AELPERCLLLFGQEGPGVTQEAQDNAR 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 135 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 164


>gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 266

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVG 106
           + L G H +  AL   +     +   + A   L  +   +L        VP         
Sbjct: 39  VLLDGFHALKHALRFGADVPLAVAEDRAAALALADELAPDLAPRLAELLVPVPPALYRSL 98

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               H       A        A   +  L+VLD   +  N GA++R A  F   G++TT 
Sbjct: 99  VPRPHPTGVAALAGRPPAPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASGVVTTG 158

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                           A+             A + +       +       + L      
Sbjct: 159 DLDLWHP---------AVVRAGAGLHFATPVARRAVPELPAGPLWAFDAEGEDLRGVRVP 209

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           D   L  G+E  GL    +E A  +  L M   + + N++ +  +ALY 
Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYH 258


>gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
 gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
          Length = 239

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQRCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
          Length = 182

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D ++ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKLKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 129

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 130 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 164


>gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 156

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIK-ALNVSNAAAVALYITQNH 279
             D   LI G E +G+  K  E     +  + M   +  +LN++N+ A+ LY     
Sbjct: 91  YKDGDYLIFGREKEGIDKKIIEKFKDRVYTIPMTKNMDRSLNLANSVAIVLYEGLRQ 147


>gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773]
          Length = 170

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +        +   + ++     EH+  ++
Sbjct: 1   MTNHIVLFEPVMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVK 60

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
                      +     +     ++      +  + +     + G E  GL     ++  
Sbjct: 61  HDSLPDFLDTLRETDHLYLVSKFANYDYTQPDYSVTDGDHYFLFGKETTGLPEVFMRQNP 120

Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
                +      I++LN+SN  A+ LY     
Sbjct: 121 DKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152


>gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 291

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKS-EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D            +           +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRLK-------LFTDYNEAQLFHYYEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+  K       +    L  + +    FP+       +  + G   +  
Sbjct: 54  AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRHLPGYNLLRG 113

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +            +          + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQE 223
                   + + G +  +P+  +             Q++           +         
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            + D++A+ILG+EG GL P+T   +     + M   + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVD 271


>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
          Length = 476

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 231 LILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQN 278
           L++G E  GL     + A         + +   + +LN   A  +  Y  + 
Sbjct: 412 LVIGGETHGLSSAAHKLAHEYGGLKVFIPLENKVDSLNAGVAVGILAYEFRR 463



 Score = 43.7 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           + SR       + L G   ++ A+N  +       +    L  L           +  V 
Sbjct: 159 KSSRARKASGKILLEGERLIADAMNAGAYAETIFFSDTKLLTTLP--LKKYPSIQLYQVQ 216

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              I ++        G+            D   +  L ++ D++ DP N+G I+R A A 
Sbjct: 217 YGKI-QLWSDLTTSPGIMGIFDVTKPTNSDIPHHIPLTIICDNIRDPGNMGTIIRCAAAV 275

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEH 186
            C  +ITT        + + ++A+GA   
Sbjct: 276 GCKALITTPDCVDVWDSKVLRAAAGAHFR 304


>gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata]
          Length = 323

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVAL 273
           +   ++     +A+++G E  GL P     A         + +   + +LN + AA + L
Sbjct: 25  QHYYEDWARAPVAVVVGGETHGLSPAALGLAASTGGKRLLIPVVPGVDSLNSAIAAGIVL 84

Query: 274 YITQNHF 280
           +  +   
Sbjct: 85  FEGKRQL 91



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 2/174 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R    D +K+ +  +  +       + L G   +  AL   +       +T   L  L  
Sbjct: 94  RHKQEDGRKVVTIAKSKKFRDNHGKVLLEGHRLIKDALEAGAVPQTLFFSTVGHLKLLPE 153

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHV 141
            +        VK    +T   +V  + +    +      +  P      +  LL++ D++
Sbjct: 154 AEIKRASLVKVKFEDIKTWSDLVTPQGLLGIFSKPDPAKMSYPAAQLANSLPLLLICDNI 213

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            DP N+G ILRSA    C+ ++ TK         + ++  GA   +P I   + 
Sbjct: 214 RDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIIANLDW 267


>gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
 gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
          Length = 274

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 132 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183


>gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
 gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
          Length = 274

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 132 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183


>gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 246

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVR 157


>gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 276

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 134 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 SGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|331700240|ref|YP_004336479.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954929|gb|AEA28626.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 228

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG GL    + +A  +  +   G  +++N   AA + ++    
Sbjct: 166 LPRRCVLLFGQEGPGLTDTARASAARLVSIAQFGSTRSINAGVAAGIVMHAWVR 219


>gi|303277263|ref|XP_003057925.1| RNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226460582|gb|EEH57876.1| RNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 1938

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 K AL+LG E +G+             +   G+I++LNV  +A++A++     
Sbjct: 1880 FQFPKKTALVLGREREGVDADLLSLLDECVVIKQVGLIRSLNVHVSASIAIHAYAAQ 1936


>gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
 gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
          Length = 304

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 171 EKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 223


>gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
 gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
          Length = 273

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183


>gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           I L+LG E  G+ P+       +A + M GI  +LNVS A AVA Y    + 
Sbjct: 161 IVLVLGHEVSGVDPRILAHCERVARIPMAGIKGSLNVSVAFAVAAY-LLRYR 211


>gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 289

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 148 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 198


>gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 239

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 87/217 (40%), Gaps = 6/217 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G  +V AA+    RK+ +L   K+   +         +    P   +  + I+ +  
Sbjct: 2   LLEGNVSVKAAILGNHRKVEKLYYDKHKNDKDLNFILHRAMEKEIPCMPLEREEINAMAA 61

Query: 107 KEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               H GL  E +P +   L       +  L++L+ V DP N+G I+R+  +  CDG+I 
Sbjct: 62  -GRTHGGLVAEASPRIYQELSECMHGKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDGLIL 120

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +    S  + +AKS++GA E++  +   +L   ++ +   G +T            +  
Sbjct: 121 PRHDWASAESTIAKSSAGAFEYMNIVMSDDLPKLVKDIKKQGIKTYAAMRKDAITYLEAD 180

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                 L +G E +GL    +       ++      +
Sbjct: 181 YRQPCLLAIGGEMRGLSSAVRNEIERNIYIPYANDFR 217


>gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
 gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
          Length = 155

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 5/98 (5%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP----K 243
                +      Q  +        +  D      +        L+ GAE  GL P     
Sbjct: 57  HSSWDAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWLVFGAETSGLPPKAHSD 116

Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
              +   +  + +  + ++++N+S A  V L+      
Sbjct: 117 VLASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQL 154


>gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 251

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 110 IAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIITYELR 158


>gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 238

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 9/218 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLAL 116
              + +    +  +        R   +A       PV          I           +
Sbjct: 23  IEMIKSRPDIVKGVYIHSTFTDREHLEAICKENHIPVLQGDK----TIAKVSDKENVFVV 78

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                 S T+DA ++  +L+   + ++  N+G ILR+AV F    +   +  +   +  +
Sbjct: 79  GVFEKYSCTVDATKSQIVLV---NPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKV 135

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S+ GAL  + +    + ++  ++  +    T  L+      +    K    +L+ G E
Sbjct: 136 VRSSMGALFRLRHQYFESFSEYQKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFGNE 195

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL        TS+  +     + +LN++ A  +  Y
Sbjct: 196 ATGLDDSYLSVGTSII-IPQSEEVDSLNLTIAVGIGTY 232


>gi|209966676|ref|YP_002299591.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209960142|gb|ACJ00779.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 153

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              P      +    L+LG E  G  P+      +  H+ M    ++LNV+ AAA+ L  
Sbjct: 80  HGVPYTDFAFHPDDTLLLGRESAGTPPEVAAACHAAVHIPMHPGARSLNVAIAAAMVLGE 139

Query: 276 TQNH 279
               
Sbjct: 140 ALRQ 143


>gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 272

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A + G E  GL  +  E   ++ H+       +LN++ A  +  Y  +
Sbjct: 128 SGDVAFVFGNERYGLPNEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMR 179


>gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
 gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
          Length = 228

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + ++ G E  GLR +  +    +  +        +N+S+A AV LY   
Sbjct: 105 KGNVGIVFGREDDGLRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 156


>gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 181

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + +           +            +     + G E  GL     +E A     +
Sbjct: 79  EDFVAQCQGKLHLISKFADKIYSEETYAD-DQPHYFLFGREDTGLPEAFMREHAEKALRI 137

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 138 PMNDDHVRSLNVSNTVCMVVYEALRQ 163


>gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 272

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 140 TALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIYSQ 190


>gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 198

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 36  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 95

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + +           +            +     + G E  GL     +E A     +
Sbjct: 96  EDFVAQCQGKLHLISKFADKIYSEETYAD-DQPHYFLFGREDTGLPEAFMREHAEKALRI 154

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 155 PMNDDHVRSLNVSNTVCMVVYEALRQ 180


>gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 241

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A     Y T+
Sbjct: 107 NGPVALVFGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMAVQTLSYETR 158


>gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 270

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 8/199 (4%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
             L +L    +              +  I    A    +    +       +      + 
Sbjct: 70  EELKKLIEAEDFDERRVCNFARNSLLAIIGTFPAEWDLVIAPHSNESFCVQNRKFFKGVS 129

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +  + +  P NIG+I R+A A  C+ +  +   +           S AL        +  
Sbjct: 130 VYAEDIRSPFNIGSIFRTAEAMGCENVFISPNCTDPNQ-------SRALRSGMGCIETLG 182

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
                       + + +      P+ +     +  +I+G+E  G+ P+  + A      +
Sbjct: 183 YKRCSLEELPQDKPVFVLETGGTPITEFSFPKEGIVIIGSEELGVSPEALKRADYGRVSI 242

Query: 255 HMPGIIKALNVSNAAAVAL 273
            M G+  +LNV  A  + +
Sbjct: 243 PMTGLKASLNVGVAFGILM 261


>gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
 gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
          Length = 245

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +     +    +       +LN+  A  V  Y  +
Sbjct: 114 VALVFGNETSGLTNEEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELR 162


>gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 266

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ALI G E +GL       A     +       +LN++ A AV  Y      A
Sbjct: 119 ALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELY-QRA 169


>gi|328725718|ref|XP_003248590.1| PREDICTED: putative TrmH family tRNA/rRNA methyltransferase-like
           [Acyrthosiphon pisum]
          Length = 344

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G H V  A+ +    I ++L  +    +               V+TVP   ID +  
Sbjct: 5   IIVGRHAVKEAITSGHT-INKVLIQEGINKKQIGEILKIAKSEKIVVQTVPKSKIDYLTD 63

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+A + AP     L+          +   L++LD + DPHN+G+I+R+A A   
Sbjct: 64  --VPHQGIAAQIAPYPYKELEDFISETKDIDHVPCLLMLDGLEDPHNLGSIMRTADAIGI 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGII  KR S   +A +AK+++GA++H+P IR++NL   ++++    +   G  + +   
Sbjct: 122 DGIIIPKRRSVQLNATVAKASTGAIQHVPVIRVTNLPQTIERLQEVRYWVAGTDAKNATD 181

Query: 220 LEQEIKNDKIALILGAEGK 238
             Q      + +++G+EG+
Sbjct: 182 YRQMDAGMPLVIVIGSEGE 200


>gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
 gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
          Length = 228

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 86  VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 134


>gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 293

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 151 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 199


>gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 250

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|195450248|ref|XP_002072430.1| GK22831 [Drosophila willistoni]
 gi|194168515|gb|EDW83416.1| GK22831 [Drosophila willistoni]
          Length = 1132

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 216  SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        K  L+LG E  G+             +   G++++LNV    ++ ++ 
Sbjct: 1064 HSTSFSDFRFPKKCVLLLGHEKHGIPVDLIGFLDYAVEIPQFGMVRSLNVHVTGSLFIWE 1123

Query: 276  TQNH 279
                
Sbjct: 1124 FCKQ 1127


>gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 228

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 86  VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 134


>gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 304

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 162 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 210


>gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 254

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 256

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL     +      H+       +LN+  A  V  Y  +
Sbjct: 110 IALVFGREDSGLTNDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVR 158


>gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863]
 gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227]
 gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli STEC_7v]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
 gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
          Length = 245

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
 gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327]
 gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1180]
          Length = 245

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 239

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01]
 gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116]
 gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01]
 gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I]
 gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic
           archaeon RC-I]
          Length = 249

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +   S  +     E K   +AL+ G E  GL  +  E    +  +        +N+S
Sbjct: 93  HIRMPCFSPRELKTLLEDKQGTVALLFGKENHGLPNEILEKCGVVLSIPTSDDYPVMNLS 152

Query: 267 NAAAVALYITQ 277
           +A AV LY   
Sbjct: 153 HAVAVVLYELA 163


>gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +      ++       +LN++ A     Y  +
Sbjct: 106 QHPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVR 157


>gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1]
 gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 264

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL     +      H+       +LN+  A  V  Y  +
Sbjct: 118 IALVFGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVR 166


>gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 155-74]
          Length = 245

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536]
 gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli
           536]
 gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7
           EDL933]
 gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai]
 gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046]
 gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A]
 gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9]
 gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
 gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046]
 gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B]
 gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. G5101]
 gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. 493-89]
 gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. H 2687]
 gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella sonnei 53G]
 gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 5216-82]
 gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
          Length = 245

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073]
 gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227]
 gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89]
 gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401]
 gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS]
 gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88]
 gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989]
 gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026]
 gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972]
 gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50]
 gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101]
 gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736]
 gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           CFT073]
 gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227]
 gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89]
 gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401]
 gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
 gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989]
 gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88]
 gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026]
 gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           LF82]
 gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972]
 gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella
           flexneri 2002017]
 gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101]
 gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146]
 gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W]
 gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1]
 gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
 gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 3431]
 gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83]
 gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli LT-68]
 gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli RN587/1]
 gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
 gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263]
 gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
 gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167]
 gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86]
 gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 3594-74]
 gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88]
 gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 4343-70]
 gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-671]
 gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2747-71]
 gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71]
 gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri VA-6]
 gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-218]
 gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-272]
 gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-227]
 gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-304]
          Length = 246

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 153

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL  + ++    T +  L M    +++N++N A+V  +     
Sbjct: 91  YETSDILLFGRESVGLSSEEKKHPRVTDLVRLPMLPGRRSMNLANTASVVAFEAWRQ 147


>gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
 gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
          Length = 231

 Score = 65.6 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ G E  GL  K  E       +        +N+S+A ++ LY   
Sbjct: 110 IVFGREDDGLSNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELY 156


>gi|290954068|ref|ZP_06558689.1| hypothetical protein FtulhU_07312 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312534|ref|ZP_06803296.1| hypothetical protein FtulhU_07304 [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 67

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +A L M G + +LNVS A  +ALY T     
Sbjct: 31  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 64


>gi|89256903|ref|YP_514265.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|169656715|ref|YP_001429146.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|89144734|emb|CAJ80065.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|164551783|gb|ABU62190.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 63

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +A L M G + +LNVS A  +ALY T     
Sbjct: 27  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 60


>gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
 gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
          Length = 241

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   +E +N  +AL+ G E  GL     +T      +       +LN++ 
Sbjct: 88  WPMLEPRECGQKFVEEGQNAPVALVFGRERTGLTNDELQTCHFHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEIR 157


>gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
           From Neisseria Gonorrhoeae
          Length = 223

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 141 EKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQVVCYEIFSQ 193


>gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 153

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + RS  A      +        ++  L ++     +++     S  
Sbjct: 1   IVLVHPQIPQNTGNVARSCAATGTPLHLVGPLGFELDNKKLKRAGLDYWDNVAVALHSTW 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAH 253
                   +       ++       +           L+ GAE  GL P+ +      A 
Sbjct: 61  DHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDWLVFGAETSGLPPQVRPVTVRYAR 120

Query: 254 LHMPGI-IKALNVSNAAAVALYITQNHF 280
           + +    ++++N++ AA + L+      
Sbjct: 121 IPIRDTHVRSINLAVAAGIGLFEAVRQL 148


>gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 252

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           W          +++ +  E  +   AL+ G E KGL     E    +  +       +LN
Sbjct: 86  WRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKGLANHEIELCPRIISIPTTSQAWSLN 145

Query: 265 VSNAAAVALYITQNH 279
           +S A  + LY    H
Sbjct: 146 LSQAVLLVLYECFKH 160


>gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 179

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A+I G E KG++ K  + +  +  +   G   + N+S +  + L+   +   
Sbjct: 125 AIIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLWDLYSKII 176


>gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
 gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
          Length = 255

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160


>gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu]
          Length = 269

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IAL+ G E  GL  +  +  +++AH+       +LN++ A  V  Y  +
Sbjct: 129 TGDIALVFGNERTGLANEHVDQCSALAHIPANPAYSSLNLAQAVQVLAYELR 180


>gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 258

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +   +  H+       +LN+++A  V  Y  +
Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160


>gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 258

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +   +  H+       +LN+++A  V  Y  +
Sbjct: 112 VAIVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160


>gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 251

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q     K+AL+ G E  GL  +         ++       +LN++ A  +A Y  +
Sbjct: 111 QHTLKGKVALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVR 166


>gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 197

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +  +I G E  G+ P TQE    +  +   G  ++LNV +AAA++++    
Sbjct: 135 CELPRRCLMIFGEESSGITPATQEILDHLIQITQYGSTRSLNVGHAAAISMWAWVR 190


>gi|145220847|ref|YP_001131525.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|315442199|ref|YP_004075078.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|145213333|gb|ABP42737.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|315260502|gb|ADT97243.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 215

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  LI GAEG G+    +  A     +   G  +++N S AA + ++     
Sbjct: 153 LPRECLLIFGAEGPGITEDAKTGAALAVSIAQFGSTRSINASVAAGIVMHAWIRQ 207


>gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus
           SJ]
          Length = 268

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 2/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               + + +VLD++    N+G++ R+A A     +         E++  AKSA G  + I
Sbjct: 111 NDEPNPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTDKWI 170

Query: 188 PYIRISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            +    +                   +  + K LE+  +  + A++LG E  GL      
Sbjct: 171 KWSYWESSLDCIDALKERGASIYAFETEKNAKALEEVREIRECAIVLGNERYGLNESVLN 230

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN-HF 280
            +  +  + + G   +LNV    A+A+Y       
Sbjct: 231 RSDEILKIRLDGKKNSLNVGTCGAIAMYHMARVQR 265


>gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N K+A++ G E  GL  +          +       +LN++ A  +  Y  +
Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLIAYEVR 157


>gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
 gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
          Length = 261

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +    +       E     +A++ G E +GL  +         H+       ALN+S
Sbjct: 91  PWPLLTPRECGDRCWFEAAKHPVAVVFGREDRGLTNEELHKCNYHVHIPSNPEYSALNIS 150

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 151 AALQVICYEIR 161


>gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
 gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
          Length = 248

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             AL+ G E +GL  +  + A     +       +LN++ A AV  Y    
Sbjct: 111 NSALMFGTEDRGLNNEELKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQ 161


>gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
 gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
          Length = 154

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I+R      C+  +      P +SA + ++      H     I
Sbjct: 1   MFTVVLFEPEIPPNTGNIIRLCANTGCELRLIKPLGFPLDSAKMKRAGLDY--HEFSTLI 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +   A       G +   L++  K   +          + G E +GL     +T     
Sbjct: 59  VHENLAECLDTLQGKRIFALTTKGKNRPDSVAFQAGDVFLFGPETRGLPATVLDTLPENQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                M    +++N+SN  A+ ++      
Sbjct: 119 KIRFPMMPNNRSMNLSNTVAITVFEAWRQL 148


>gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 241

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVR 157


>gi|325287947|ref|YP_004263737.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324323401|gb|ADY30866.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 152

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D   N    + + +   P N+G + R+A       I T       ++     +      +
Sbjct: 3   DNFVNEYFGIGIQNGKTPENLGVLWRTAQNLGASFIFTIGNRYAKQACDTHNAVKSIPYY 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                     +        G +    + D +          +   +LGAE  GL  +  E
Sbjct: 63  HYNTFNDFKNNIPVGTRIVGVELDDTAVDLETFEH----PRRCVYLLGAEDHGLSKEAIE 118

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +          +LNV+ A ++ LY       K
Sbjct: 119 ESHFLVK---FKSTLSLNVAVAGSIVLYD--RQLGK 149


>gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
 gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
          Length = 239

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFAVEGQKHPVALVFGRERTGLTNDELQKCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|213965150|ref|ZP_03393348.1| spou rrna methylase family protein [Corynebacterium amycolatum
           SK46]
 gi|213952264|gb|EEB63648.1| spou rrna methylase family protein [Corynebacterium amycolatum
           SK46]
          Length = 223

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++  L+ G EG G+  + Q  A     +   G  +++N   AA +A++    
Sbjct: 161 LPERCLLLFGQEGPGVTEEAQRAADLTVSIAQFGSTRSINAGVAAGIAMHSWIR 214


>gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 241

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N K+A++ G E  GL  +          +       +LN++ A  +  Y  +
Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVR 157


>gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas
           ingrahamii 37]
          Length = 254

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL     +       +       +LN++ A     Y  +
Sbjct: 106 KHPVALVFGRENSGLTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVR 157


>gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
          Length = 215

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 64  WPMLEPRECGEKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAM 123

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 124 AVQTLSYEVR 133


>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
 gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
 gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
 gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 181

 Score = 65.6 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 17  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPK-TQETATSMAH 253
            + +      G   +      K   +++  +  I   + G E KGL     +E       
Sbjct: 77  AEFMDYASKQGRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPEKAIR 136

Query: 254 LHMP-GIIKALNVSNAAAVALYITQNH 279
           + M    +++LNVSN A + +Y     
Sbjct: 137 IPMNDEHVRSLNVSNTACMIVYEALRQ 163


>gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617]
          Length = 241

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157


>gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
 gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
          Length = 236

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 13/214 (6%)

Query: 58  SAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            AAL N  R++ ++        ++        +      V  V  Q + +I    + HQG
Sbjct: 1   MAALEND-RQLNRIWVTNKLRHDSRFSNLLRISKSKGAVVDEVSLQRLSQIT-NGSNHQG 58

Query: 114 LALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +A + +P    TLD          +  ++++ D + DP N+GAI+R++ A  C G+I  +
Sbjct: 59  IAAQVSPYSYYTLDRLITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLIIPQ 118

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R + S ++ +AK A+GALE  P  R+ NL  AL+ + + GF   G  ++  K L     +
Sbjct: 119 RRAASITSSVAKVAAGALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNFDFS 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             I L++G+EG GL   TQ     +  + + G  
Sbjct: 179 CAIGLVIGSEGNGLNLLTQRYCDELLSIPLEGKT 212


>gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157


>gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           A + G E +GL  +          +       +LN++ A  +  Y  
Sbjct: 107 AYVFGPEDRGLSNEELAHCQRTVQIPTGAAYPSLNLAQAVGICAYAL 153


>gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 151

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N G I R  V       +            L +S      H+     
Sbjct: 1   MLNVVLVEPEIPNNTGNIGRLCVGTESRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N+ + +Q++       +   S S+K   +    D   L+ G E  GL         +  
Sbjct: 61  QNVEEWIQQIPDHSRVFLMS-SHSEKSYLENEFQDGDWLVFGKESVGLSAAFMARFENHL 119

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M  +I++ N++N+ A  +   +   
Sbjct: 120 TIPMSPLIRSFNIANSVAFVVGEAKRQI 147


>gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 244

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A + G E KGL     +       +       ++N++ + ++ LY T  
Sbjct: 109 GRVAWVFGREDKGLETSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSR 160


>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 178

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +K A++ G E KG++ +    + ++  +   G   +LN+S +A V ++   +  
Sbjct: 122 EKYAVVFGNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWDLFSKL 175


>gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 243

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 6/183 (3%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            P+ +D   G                       R  +L + +++  +  NIG ++R+A A
Sbjct: 59  DPELLDN--GDRRNVVDAYRYWKMDAIVADIDSRRHELHIAIENFENDANIGTVVRTANA 116

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D +    R   +    +       LEH   +       A Q +          S   
Sbjct: 117 FAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHKTVAEVLDYAAEQDLAVVAVDNTPGSVPL 176

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +          +  L+ G EG G+  + Q  A     +   G  +++N   AA +A++  
Sbjct: 177 ET----AELPRRCLLLFGQEGPGVTEEAQRGARMTVSIAQFGSTRSINAGVAAGIAMHAW 232

Query: 277 QNH 279
              
Sbjct: 233 IRQ 235


>gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 250

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 244

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N K+A++ G E  GL  +          +       +LN++ A  +  Y  +
Sbjct: 106 NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIR 157


>gi|258655261|ref|YP_003204417.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258558486|gb|ACV81428.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 224

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL  + +  A +   +   G  +++NV  AA +A++     
Sbjct: 162 LPRDCLLLFGGESAGLSEQARAGAAATVSIAQFGSTRSINVGVAAGIAMHAWIRR 216


>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 582

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVALYITQN 278
              L+LG+EG GL    +  A +   +           P  + +LNVS A+A+       
Sbjct: 491 PCVLMLGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASALLCQEFLR 550


>gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905]
          Length = 245

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|294945420|ref|XP_002784671.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239897856|gb|EER16467.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 222

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 2/159 (1%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                 L   R  +  +++ +V    N G +LRSA AF    +         E A+    
Sbjct: 1   MASPVDLPPPRPWKSYLLICNVGKRQNWGQLLRSATAFGVTEVFVVGAKKMKELALFGNQ 60

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            +       +           K        + +   S+   +          +LG EG G
Sbjct: 61  GTTLHATFEFFDTIAEAKEELKRRGITLCGVEIHPSSEPIQDM-HWRGDTCFMLGNEGTG 119

Query: 240 LRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQ 277
           +  K         ++        +LNV+ A ++ L+   
Sbjct: 120 MTDKQIAACDQFTYIQQYTKATASLNVAVAGSIVLHHFA 158


>gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
 gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
          Length = 244

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 239

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS----------PSESAVLAKSA 180
            + ++++L    DP NIGA++R+ +   C  +                      VLA   
Sbjct: 1   MNDIIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDPCPFDPATISAVAHRPDPVLANLT 60

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
             A        I  L     + H        +   + +  ++      +A++ G+EG GL
Sbjct: 61  VHAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     +  L M      LN++ A  + LY  Q 
Sbjct: 121 SRDELVLCQEILGLPMASDYPVLNLAQAVLLVLYELQQ 158


>gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
 gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
          Length = 226

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +       + +  E+    +AL+ G E +GL  +  +      ++       +LN+ 
Sbjct: 63  PWPLVNPRVCAERVYPELTEHPVALVFGREDRGLTNEELQVCNLHVNIPASEDYTSLNLG 122

Query: 267 NAAAVALYITQ 277
            A  V  Y  +
Sbjct: 123 MAVQVVTYELR 133


>gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 299

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A + G E  GL  +  E   ++ H+       +LN++ A  +  Y  +
Sbjct: 155 SGGVAFVFGNERYGLPNEVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMR 206


>gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074]
 gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 261

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 74/235 (31%), Gaps = 15/235 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKI 104
           + L G H +  AL   +     L A + A  +L      D        +  V  +T+  +
Sbjct: 28  VLLEGFHALKHALRFGAVVPVALCADRAAALQLAAELAPDLEGALAGLLVEVDAETLRGL 87

Query: 105 VGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           V +       AL   P                ++VLD      N GA++R A  F   G+
Sbjct: 88  VARPHPTGVAALAERPAPLAVEAALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGASGV 147

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT    P    V+   A                    ++       +         +  
Sbjct: 148 VTTGPLDPWHPTVVRGGAGLHFATAVAP---------LEVPELPAGPLFALDPEGADIRG 198

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D   L  G+E  GL  + +  A  +  L M   + + N++ +  + L+   
Sbjct: 199 LTLPDDALLAFGSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLFHWA 253


>gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
 gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
          Length = 245

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               LI G E +GL  +    A  +  +       +LN++ A ++  Y      
Sbjct: 113 KPGGLIFGREDRGLTNQEINYAQKLVFIPTSPEYISLNLATAVSICCYELSQSL 166


>gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
 gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
          Length = 254

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++A++ G E  GL             +       +LN++ A  +  Y  
Sbjct: 107 QGEVAILFGREDNGLSNDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYEL 157


>gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira
           halophila SL1]
          Length = 249

 Score = 65.2 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A + G E  GL     +    +  +       +LNV+ +  +  +  +
Sbjct: 108 DGDLAWVFGRERTGLTNAELDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELR 159


>gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
 gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
          Length = 271

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 140 VALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301]
          Length = 257

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 122 SQPIALVFGTEMSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMR 173


>gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
 gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
          Length = 169

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K        +   +D     E          + G E  GL     +E       +
Sbjct: 66  ADFMSKNQDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLPEDFMREHPEKAIRI 125

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151


>gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 235

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            H        +   + +   +      +AL+ G E  GL  +       +  L +     
Sbjct: 82  PHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNGLSREELSRCHEIIGLPINPAYP 141

Query: 262 ALNVSNAAAVALYITQN 278
            LN++ A  + LY  Q 
Sbjct: 142 TLNLAQAVLLILYELQQ 158


>gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476
 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 230

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              I ++ G E  GLR +  +    +  +        +N+S+A AV LY   
Sbjct: 107 KGNIGIVFGREDDGLRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 158


>gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
          Length = 168

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
            S+L   L  +       I   +      E     ++   + G E  GL     +E    
Sbjct: 61  HSDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LN+SN AA+ +Y     
Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150


>gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 167

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    +   L+ G+E  GL P+  E  T     + M    ++LN+S +  +  Y     
Sbjct: 94  YEARFEEGDHLVFGSEVSGLAPEVMEGGTGTAVTIPMLEDRRSLNLSTSVGIGTYEALRQ 153


>gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
 gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
          Length = 170

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           IALI+G+E  G+     +   S+ H+ M G   ++NV  +  +ALY       
Sbjct: 117 IALIIGSEKHGISEDILQYLDSVYHITMFGNNSSMNVIQSTGIALYEITKKII 169


>gi|66808737|ref|XP_638091.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
 gi|60466535|gb|EAL64587.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
          Length = 1677

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281
                 K  L+LG E +G+  +          +   GII++LNV  + ++ ++   +    
Sbjct: 1617 FEFPQKSVLVLGKEKEGIPTEFINLLDKCIEIPQLGIIRSLNVHVSGSLMIWDYFRQQLN 1676

Query: 282  K 282
            K
Sbjct: 1677 K 1677


>gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803]
 gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803]
          Length = 240

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K AL+ G E  GL  +    A     + +     +LN+S A  V  Y    
Sbjct: 98  KSALVFGREDSGLTNEELNQAHRFVRIPVHPQYPSLNLSQAVMVCTYELYQ 148


>gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 246

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A++ G E  GL  +  +      ++       +LN++ A     Y  +
Sbjct: 107 HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157


>gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
          Length = 194

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 176


>gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
 gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             KI ++ G E  GLR +  +    +  +        +N+S+A AV LY   
Sbjct: 104 KGKIGIVFGREDDGLRNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIY 155


>gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 185

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     + M   I+A N+SN+AA+ ++     
Sbjct: 102 FVFGRETTGLLETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355]
          Length = 248

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 157

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    + +VL     P N GAI R+ VA   + I+        +   + ++ +   +H+ 
Sbjct: 1   MTKPNMKIVLVTPEIPWNTGAIGRTCVALGLELILIKPLGFSLDEKAVRRAGTDYWKHVD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
                +    L   +              + + +   +    LI G E  GL     +  
Sbjct: 61  LTLYDDWQSFLDAHNPAPESMYFFEEHGAQTIYEPEYDPNGYLIFGCESAGLPRAVLDGR 120

Query: 248 ATSMAHLHM-PGIIKALNVS-NAAAVALYITQN 278
              +  L M   ++++LN++  A AV  Y    
Sbjct: 121 DDQVFKLPMLSPLVRSLNLANVATAVV-YQAMR 152


>gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont]
          Length = 142

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 L+ G E +GL P+          L     I+++N+SNA +V +Y      
Sbjct: 87  YQPGDYLLFGPESRGLPPEILNA------LPAEQKIRSMNLSNAVSVVVYEAWRQL 136


>gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 266

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ALI G E +GL       A     +       +LN++ A AV  Y    
Sbjct: 119 ALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQ 167


>gi|313620923|gb|EFR92097.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
 gi|313625369|gb|EFR95160.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 43

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +E    + HL M G + +LN S AA++ LY      
Sbjct: 1   LVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKR 38


>gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 222

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +  +I G E  G+ P TQE    +  +   G  ++LNV +AAA++++    
Sbjct: 160 CELPRRCLMIFGEESSGITPATQEILDRLIQITQYGSTRSLNVGHAAAISMWAWVR 215


>gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
          Length = 158

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 2/149 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YI 190
            +  +VL       N G I R+ +    D  +        +S+ + ++     E +  + 
Sbjct: 1   MERHIVLVEPEIHWNTGNIGRTCLGAGADLHLIKPLGFSLDSSHVKRAGLDYWEKVRLHT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             S    + +  ++     +     ++   +      ++ L+LGAE +GL     +    
Sbjct: 61  WGSFDEFSAKMQNAPDETLLFSKLGARPFWDMPSHMTRLFLVLGAETRGLPQGVLDQYPG 120

Query: 251 MA-HLHMPGIIKALNVSNAAAVALYITQN 278
              H+ +   I++LN+S  A + LY +  
Sbjct: 121 NVYHVPITNEIRSLNLSTTAGIVLYESMR 149


>gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F]
          Length = 163

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    DP N G I RS V F+    +              ++     +H+   + ++ 
Sbjct: 7   VVLYQPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66

Query: 196 TDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT 249
            D +++           +       +    E    + +I L+ G E  GL  +   +   
Sbjct: 67  DDFIKQNQIDDNLFLFTKKANNYLSNINFKEYLDHDQRIYLVFGQETNGLPEQLLNKYQN 126

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++  + M   I++ N++N+   ALY     
Sbjct: 127 NLVKIPMHNAIRSFNLANSVICALYELSRQ 156


>gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
 gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
          Length = 248

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ALI G E +GL  +    A     +       +LN++ A AV  Y    
Sbjct: 111 NTALIFGPEDRGLNNEELSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQ 161


>gi|159472665|ref|XP_001694465.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276689|gb|EDP02460.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 233

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNAAAVALYIT 276
                ++A+++G E  G+  +  E A         L M G   + N+S A A+ L+  
Sbjct: 70  IQLPPRLAIVMGREADGVSAEMLEAANRCTGLRVCLPMYGYNDSFNLSVATAMVLHHL 127


>gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 166

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  K  L++GAE +GL     +       + + G+  + NV++A ++A+Y     
Sbjct: 104 HDFDFPHKCVLVVGAEREGLSQDCLDCLDYTVEIPVWGLPYSYNVASATSLAVYEYCRQ 162


>gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
 gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
          Length = 276

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+ G E  GL  +  E  +++AH+       +LN+  A  V  Y  +
Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELR 177


>gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
 gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
          Length = 169

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 3/153 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               + L     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MTNHIALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
             NL   ++   +     I    +     ++     +    + G E  GL  +  +E   
Sbjct: 61  HKNLAAFMEVAKNGQLHLITKFGNRVYSDVDYAAIEEDHYFLFGKETTGLPEEFMREHEE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
               + M    +++LN+SN AA+ ++       
Sbjct: 121 DCLRIPMNDEHVRSLNLSNTAAILIFEALRQQN 153


>gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue;
           AFUA_4G13450) [Aspergillus nidulans FGSC A4]
          Length = 617

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 115/348 (33%), Gaps = 85/348 (24%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN------ 62
            EK  S +  H+     N    K+         +T+      +YG   V AAL       
Sbjct: 155 EEKRRSRRIEHHKPTEENPERVKQHVWVPPTIPYTTSASEF-IYGTTAVEAALRCCKRQL 213

Query: 63  ---------------NPSRKIFQLLATKNALARLDW----------DANLPHPFPVKTVP 97
                             R + +L  +KN   +L +           A  PH   V  V 
Sbjct: 214 YKLYLYQTAGEEELSADKRVLRKLALSKNVKVKLAFGEWNRLLDKMSAGRPHNGCVLEVS 273

Query: 98  --------------------PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
                                  +     +EA   G         S T        ++++
Sbjct: 274 PLPRTPIQALRPVQLGDGEFKVELAPQTREEAKVNGTNDCIKINNSYT-QQQIRYPVVVL 332

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V D  N+G+I+RSA     D I+   R+S   S V  K+++GA E++  + + N  D
Sbjct: 333 LEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAGAAENMTLLDVQNEVD 392

Query: 198 ALQKMHSWGFQTIGLSSD--------------------SKKPLEQEIKNDKIALILGAEG 237
            +++  + G++                           ++   +  I      +++G EG
Sbjct: 393 FIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANEGHPDALIGQSPSVIMMGYEG 452

Query: 238 KGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
            GL    +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 453 SGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNVSVAAALLM 500


>gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
 gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
          Length = 152

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N GAI R+ VA   + I+        +   + ++     +H+      + 
Sbjct: 3   LVLVTPEIPYNTGAIGRTCVALELELILIRPYGFSLDEKAVRRAGQDYWKHVQLSEYDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HL 254
            D +                  + +          L+ G E KGL     +       HL
Sbjct: 63  QDFMDDRKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLDGMDDRVFHL 122

Query: 255 HMPGI-IKALNVS-NAAAVALYITQN 278
            M    +++LN++  A AV  Y    
Sbjct: 123 PMRNPLVRSLNLANVATAVI-YQAMR 147


>gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
          Length = 186

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 25/202 (12%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL---MVLDHVND 143
           LP       +    ++     ++   G+           +   +NS +L   ++ D + D
Sbjct: 3   LPDEVDKVRISTHRMNTWSLLDSPP-GIMAVAKKPTYEEISKSKNSHILPLTVICDGLKD 61

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++RS  A  C  I+            + +SASGA  +IP     +    L  + 
Sbjct: 62  PGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSASGAHFYIPVYEDISWNRMLDYLP 121

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGI 259
              F+                    I L++G+E  GL  +      + A    H+ M   
Sbjct: 122 HDFFRDTE-----------------IVLVVGSERTGLSEQALRFGEQHAGKRLHIPMTND 164

Query: 260 IKALNVSNAAAVALYITQNHFA 281
              LN + AA +  +  +   +
Sbjct: 165 KFCLNSAVAATLIAFEIRKQMS 186


>gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640]
 gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06]
          Length = 271

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 140 VALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 177

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           + K A + G E  G+  +  + +     +   G   + N+S    + L+    +N F 
Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177


>gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 177

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           + K A + G E  G+  +  + +     +   G   + N+S    + L+    +N F 
Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177


>gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 272

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 140 VALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
          Length = 241

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL     +T      +       +LN++ 
Sbjct: 88  WPMLEPRECGQKFVSEGQESPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEIR 157


>gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
 gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
          Length = 238

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL  +       +  ++      +LN++ A  V  Y   + 
Sbjct: 106 VALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 156


>gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1396

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + K  L+LG E  GL  +  E   +   +   G+I++LNV  +A + ++     
Sbjct: 1337 NFKFDKKTVLVLGREKTGLPIEYIELMDNCVEIPQYGVIRSLNVHISAVICVWQYVQQ 1394


>gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 168

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MKNHIVLFEPQIPANTGNIARTCAATNTALHLIEPLGFSTDDKHLKRAGLDYWSKVEITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
             NL   L ++       I   ++          + +   I G E  GL           
Sbjct: 61  YENLPSFLNELGDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGLPETFMRQNKEK 120

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNH 279
              + M    +++LN+SN AA+ +Y     
Sbjct: 121 CLRIPMNDQHVRSLNLSNTAALVIYEALRQ 150


>gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 243

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A++ G E  GL  +  +      ++       +LN++ A     Y  +
Sbjct: 107 HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157


>gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 287

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     E    + H+       +LN+S A  +  Y  +
Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186


>gi|281204193|gb|EFA78389.1| anaphase promoting complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1113

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 10/216 (4%)

Query: 67   KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123
             I +L        +               +  + +DK+                 +    
Sbjct: 842  IIDKLYLEDEIDNQDISRYRELSRIARPVLSDERLDKLDSVLRSRTDRVAIVCDNVKTTG 901

Query: 124  ------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                   + +A+    + ++ D    P N      +    +     T             
Sbjct: 902  NVAAIIRSCEAMGIQHIHVIDDQPYTPFN-DISKGTEKWVTVHRHHTPLDCVDYLKQQRY 960

Query: 178  KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            +  S  L        + +        +    T   S  S+   + +  N++IA++ G E 
Sbjct: 961  QIWSSDLCEGAIRFDNLVKTLPATTTTTSTTTTTTSIISQNDNDNDDNNNRIAIVFGNEK 1020

Query: 238  KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             G+    +  +     L M G++++ NVS +  + L
Sbjct: 1021 SGVTEDMKILSDKRIFLPMYGMVQSFNVSVSVGMTL 1056


>gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 287

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     E    + H+       +LN+S A  +  Y  +
Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186


>gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 287

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     E    + H+       +LN+S A  +  Y  +
Sbjct: 138 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 186


>gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
 gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
          Length = 283

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI 275
              +      L++GAEG GLR      A     +          + +LNVS AA++  Y 
Sbjct: 206 HCPVAEHPTILMMGAEGTGLRDSLLNLAHYKVGIKHGREVDEIGVDSLNVSVAASILSYE 265

Query: 276 TQN 278
              
Sbjct: 266 MLQ 268


>gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1]
 gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 243

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +A++ G E  GL        +  + +       +LN+SNAAA+ LY      
Sbjct: 104 PGTVAIVFGRESVGLTRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKAR 158


>gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 146

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 1/95 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +      QK   +  +             +      I  + G E  G+  +  + 
Sbjct: 33  HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 92

Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M    ++LN++N   +  Y       
Sbjct: 93  NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 127


>gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
          Length = 194

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQ 176


>gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
 gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
          Length = 326

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     E    + H+       +LN+S A  +  Y  +
Sbjct: 177 VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVR 225


>gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
 gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
          Length = 175

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  + L     P N G I R+  A +    +       ++  +L ++     EH+    
Sbjct: 1   MKNHIALYQPLMPANTGNISRTCAATNTPLHLIKPLGFSTDDKMLKRAGLDYWEHVEVHY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE--T 247
             +L D L  +       I   +          +N   +   + G E  GL     E   
Sbjct: 61  HESLEDFLAFVGERPLYLITKFAPRIYCQADLAQNSAGEQFFLFGKETTGLPADLMEERK 120

Query: 248 ATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
           A     + M    +++LN+SN A + +Y     
Sbjct: 121 AD-CLRIPMNDQHVRSLNLSNTANIVIYEALRQ 152


>gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211]
 gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 246

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            D IA+I G E +GL  +  + A  +  L       +LN+S+A A+ L+    +  K
Sbjct: 110 KDPIAIIFGREDRGLSNQELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQK 166


>gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 250

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  Q  +++ ++    N+G+I+RS   F  +G+  +      +   +  +A G  E IP 
Sbjct: 98  KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAARGCQEWIPI 157

Query: 190 IRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  +  D ++             + +    +      +K  ++LG E  G+ P+    A
Sbjct: 158 KRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEA 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           T    + M G   ++NV+ A A+  +  +++
Sbjct: 218 TMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 248


>gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 10  NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 61


>gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  Q  +++ ++    N+G+I+RS   F  +G+  +      +   +  +A G  E IP 
Sbjct: 89  KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAARGCQEWIPI 148

Query: 190 IRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  +  D ++             + +    +      +K  ++LG E  G+ P+    A
Sbjct: 149 KRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEA 208

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           T    + M G   ++NV+ A A+  +  +++
Sbjct: 209 TMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 239


>gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
 gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
          Length = 228

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +++ L+ G E  GL  +  +   ++ H+        +N+S+A AV L+     
Sbjct: 102 PERLTLVFGRESVGLTREELKECDALLHVPASPQYPVMNLSHAVAVVLWEVWKQ 155


>gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1118]
          Length = 186

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEVHM 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+        +     SS +   ++   KN     + G E  GL     +E  
Sbjct: 61  HDDLNAFLKTLGPDDEMYLISKFSSKNYSQVDYTDKNKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ]
          Length = 256

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 104/258 (40%), Gaps = 7/258 (2%)

Query: 23  LRRNHRDYKKMQS-FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           ++ ++   K +    + K +  +    + +     V   LN+   ++ +L    + + R 
Sbjct: 4   IKVDNISDKNISEFLSLKDKSLALSNTIIVETEKVVLKLLNSN-TEVIKLFVNPDFIDRH 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +      + T   + + +I+G   +H G+          +LD +++  L++  + +
Sbjct: 63  SELLSKLS-IDIYTADKEVMQEIIGH-NLHHGVMALARRPEYISLDELQDKVLIL--NGL 118

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIG I+R+  AF+ + II  KR          + + G +  +   + ++L   L+K
Sbjct: 119 TSPENIGTIVRNCAAFNINSIIIDKRTCSPYVRRCIRVSMGNIFRVKVYKSNDLKSDLKK 178

Query: 202 -MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                       + +    L +     K  +I+G+EG G+     E +  +  + +   +
Sbjct: 179 LQSLGHRVISTANQEGAIDLPKYSFPKKSCVIIGSEGHGIEKDILEVSDDIIRIPIDDTV 238

Query: 261 KALNVSNAAAVALYITQN 278
             LN + ++++ LY    
Sbjct: 239 AHLNAACSSSIFLYQLSQ 256


>gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 239

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + K+A++ G+E +GL  +       + H+       ++N+  A AV +Y    
Sbjct: 108 SGKVAVLFGSEKRGLSNEDLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIAR 160


>gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 246

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVR 157


>gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 27/91 (29%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +          +               + + +     +   AL+ G E  GL  +  +  
Sbjct: 81  HGCQYAFGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHTALVFGREDCGLLNEELDLC 140

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +     + ++N++ + ++ LY     
Sbjct: 141 QRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQ 171


>gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
 gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
          Length = 167

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 1   MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           S+L   L  +       I   +      E     ++   + G E  GL     +E     
Sbjct: 61  SDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 149


>gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 146

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 1/95 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +      QK   +  +             +      I  + G E  G+  +  + 
Sbjct: 33  HKNWQNFSEKYGQKNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKK 92

Query: 248 ATS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M    ++LN++N   +  Y       
Sbjct: 93  NKEKCLRIPMIAKARSLNLANTVVIIAYEFHRQLN 127


>gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K   +A++ G E  GL  +          +       +LN++ A  +  Y  +
Sbjct: 105 KQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELR 157


>gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 218

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A++ G E  GL  +  +      ++       +LN++ A     Y  +
Sbjct: 82  HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 132


>gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
 gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
          Length = 168

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE- 185
           +      + +V D +  P NIG   R + +F    I   +    +E+ ++ K+A   +  
Sbjct: 11  NEQTQFPITIVCDAIRTPENIGMCFRISESFGVSKIYFHEASPSTENKIVKKTARNTIHQ 70

Query: 186 --HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H  Y     L   L+   +                    KN+KI L+LG+E  G+  +
Sbjct: 71  TEHETYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERNGV--E 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +A     + M G   ++NV ++ A+ LY   +   K
Sbjct: 129 NINSADETIAIPMYGKNSSMNVIHSLAITLYEATSQLLK 167


>gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 240

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  ++ G EG GL  +       +  +        +N+++AAA+  Y      
Sbjct: 115 RTFILFGREGDGLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYEIFKKR 167


>gi|309810611|ref|ZP_07704422.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308435412|gb|EFP59233.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 263

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 8/189 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            P+ ++   G     +                       + +++     NIG+++R+A A
Sbjct: 47  DPELLEH--GDRRNVEDRFRYWRHDAIVEELDTARHAFHVAVENWEHDFNIGSVIRTANA 104

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+        R   +    +         H P +       A             L   +
Sbjct: 105 FNAKAFHIVGRRRWNRRGAMVTDRYQHEFHHPTVDDLLAWAATAGPVDAAGHPTRLPVIA 164

Query: 217 KKPL------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +      E     +   L+ G EG G+     E A ++  +   G  +++N   AAA
Sbjct: 165 IDNVAGSVPLEAFDLPEHCVLLFGQEGPGVSADALERADAVLDIAQFGSTRSINAGAAAA 224

Query: 271 VALYITQNH 279
           V ++     
Sbjct: 225 VTMHAWIRR 233


>gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +  +I G E  G+ P TQE    +  +   G  ++LNV +AAA++++    
Sbjct: 160 CELPRRCLMIFGEESSGITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMWAWVR 215


>gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1]
          Length = 695

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALYITQN 278
           +    L+LG EG GL    +  +     +        + +LNVS AA +  +    
Sbjct: 551 DHPCLLVLGNEGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGLLCHAFVK 606



 Score = 41.0 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 28/138 (20%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKS-------------------RHTSQPENLFLYGVHTV 57
           +S+ +  RR++    +  S ++ S                   ++T+       YG   V
Sbjct: 261 NSNRSAPRRDNTRNDRWNSPDEDSSDVYAVERAQRNGMMAMTIKYTTAASQFL-YGRSVV 319

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDA------NLPHPFPVKTVP--PQTIDKIVGKEA 109
            AAL    RK++ L          + D          H  P+ TVP   Q I   +    
Sbjct: 320 KAALEQNRRKLYNLYIYGGENRMDNKDNTIMTRMAEKHGVPITTVPTHEQRIMDKMSMGR 379

Query: 110 VHQGLALETAPLLSPTLD 127
            H G  LE +PL    + 
Sbjct: 380 PHNGFVLEASPLPQLPIK 397


>gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72]
          Length = 242

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL  +          +       +LN+  A  +  Y  +
Sbjct: 111 QGDVALVFGNETSGLSNEDVLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMR 162


>gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha
           C91]
          Length = 248

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +AL+ G E  GL             +       +LN++ A  V  Y  +
Sbjct: 111 HHPVALLFGRESAGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELR 162


>gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 241

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   +E ++  +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 88  WPMLEPRECGRKFVEEGESSPVALVFGRERTGLTNEELQKCHFHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|120401678|ref|YP_951507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119954496|gb|ABM11501.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 214

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 LI G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 152 LPRDCLLIFGQEGPGITDDAKAGAPLTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 206


>gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 180

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + ++         +   ++                + G E KGL              +
Sbjct: 77  EEFMEAARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQYEEKAIRI 136

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162


>gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2]
 gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis
           S2]
          Length = 234

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ G E  GL+ +  E    +  +        LN+S+A +V LY   
Sbjct: 110 IVFGREDDGLKNEDVELCDILVSVPTSNKYPILNLSHAVSVILYEIY 156


>gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
          Length = 168

 Score = 64.5 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
            SNL   L  + +     I   +      E     ++   + G E  GL     +E    
Sbjct: 61  HSNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LN+SN AA+ +Y     
Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150


>gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica]
 gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica]
          Length = 608

 Score = 64.5 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              R   L++ LD +ND HN+G+ILRS      D +I T +     S  +AK++SGALE+
Sbjct: 435 HRPRRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCAPLSPAVAKTSSGALEY 494

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSK---------------KPLEQEIKNDKIAL 231
           +P    S       +        I  ++                  +     + N    L
Sbjct: 495 MPVFENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPLSLRQCGSWLDNKPTVL 554

Query: 232 ILGAEGKGLRPKTQETATSMAHLHM------PGIIKALNVSNAAAVAL 273
           +LG E  G+R      A     +           + +LNV  AA + +
Sbjct: 555 VLGGEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLNVGVAAGILI 602



 Score = 44.1 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 12/104 (11%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRK-- 67
           K      +++++   K+   F  +  +              LYG H V A L +  R+  
Sbjct: 139 KPKKVYIVKKDNPREKEGAIFRNRQTYDKPKLDERFFGQDVLYGTHAVEACLTSHKRRNQ 198

Query: 68  IFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             +L   +  L     +   D       P + V   T++ I   
Sbjct: 199 CLKLFVGEGKLGEPVVKKIMDMARKLRIPTENVDRNTLNLITKH 242


>gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1]
 gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus
           marinus F1]
          Length = 231

 Score = 64.5 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++A++ G E  GL  K    A  +  +        LN+S A AV L+   N
Sbjct: 105 NRLAILFGRESTGLTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156


>gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
 gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
          Length = 231

 Score = 64.5 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++A++ G E  GL  K    A  +  +        LN+S A AV L+   N
Sbjct: 105 NRLAILFGRESTGLTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156


>gi|225352565|ref|ZP_03743588.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156759|gb|EEG70153.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 265

 Score = 64.5 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 199 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 258

Query: 279 H 279
            
Sbjct: 259 Q 259


>gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           MP688]
          Length = 254

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++ KIAL+ G E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 114 AHEDSKIALVFGTEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 168


>gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 153

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +  A + G E  G+  K + + +   +  + M    + LN+SN+ AV  Y   
Sbjct: 88  YTDVQYKEGDAFLFGNETSGVPTKMKNSWSEERILKIPMEDSSRCLNLSNSVAVISYEAM 147

Query: 278 NHF 280
              
Sbjct: 148 RQI 150


>gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum
           STM815]
          Length = 276

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IAL+ G E  GL     E  +++AH+       +LN+S A  V  Y  +
Sbjct: 134 HGDIALVFGNERTGLSNDDVERCSALAHIPANPAYSSLNLSQAIQVLSYELR 185


>gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
 gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NSPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157


>gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 11/165 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L+    +   ++LD      NIG++ R    F    +                 +SGA
Sbjct: 8   PPLERPDLTLPCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSGA 67

Query: 184 LEHIPYIRISNL-----------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
              +    I                   +              +        +  K  L+
Sbjct: 68  HWPLDNATIYETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGLL 127

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GAE  GL         S+  + +     +LN+S A  + LY  +
Sbjct: 128 FGAERAGLETSDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWR 172


>gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
 gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NSPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157


>gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 169

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G E  GL     +E       + M   I+ALN+SN AA+ ++     
Sbjct: 102 FMFGKETTGLPETFMRENEDQCLRIPMSDHIRALNLSNCAALVIFEALRQ 151


>gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein
           [Escherichia coli E128010]
          Length = 148

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 8   NTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 59


>gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 244

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis
           JLW8]
          Length = 247

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  IAL+ G E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 111 NQPIALVFGTEMSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIR 162


>gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 200

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 217

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 242

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
 gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 243

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
 gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
          Length = 246

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 106 NTPVALVFGRERVGLTNEELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As]
          Length = 260

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A + G+E  GL         ++  +       +LN++ A  V  +  + 
Sbjct: 127 RRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRK 178


>gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
 gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
          Length = 260

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A + G+E  GL         ++  +       +LN++ A  V  +  + 
Sbjct: 127 RRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRK 178


>gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 234

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 10/219 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+  +     + 
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILNDKKIPYTISSKQINKISLKDKEYVIGVFKK 83

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                   +        ++LD +++  N+G I+RS + F    +          +  + +
Sbjct: 84  QKSKLQEKNH-------IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   R  NL    +K          L  +S   L         +L  G EG 
Sbjct: 137 ASMGAFFKLNIQRFDNL-QDYKKNFPENKIYSFLLDESSDELGDVKFEQPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +      +   ++    + +LN+  A ++A+Y ++
Sbjct: 196 GLPQEYYNE--NKIFINQSKDVDSLNLPIACSIAMYQSR 232


>gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3]
 gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus
           Nankai-3]
          Length = 231

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + ++ L+ G E  GL     E       +        +N+S+A ++ LY   N
Sbjct: 105 DGRLGLVFGREDYGLYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYN 157


>gi|118616019|ref|YP_904351.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568129|gb|ABL02880.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 218

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+   T+  A     +   G  +++N   AA +A++     
Sbjct: 156 LPRDCLLVFGREGPGITDDTRVGAVVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 210


>gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 169

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 2/150 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R  V      I+  K     +   + ++     +++  +++
Sbjct: 1   MLNIVLYEPEIPQNTGNIGRFCVGTESRLILVGKLGFSLDDKHVKRAGLDYWQNVNLMQL 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKT-QETATS 250
            +L    ++  +       LS  + +   +   +ND + LI G E  GL     ++   S
Sbjct: 61  PSLEAFYEEFPNDKHPYAFLSKFASRVYTEIPHENDNLMLIFGRETSGLPESVEKDHPDS 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +   G +++ N+SN+ A+  +      
Sbjct: 121 LFRIPATGKVRSFNLSNSVALVGFDIIRRR 150


>gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
 gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
          Length = 251

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 114 PVAIVFGTEMSGLSNAELDHCQLLAMIPANPEYSSLNLAAAVQVISYELR 163


>gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
 gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
          Length = 229

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 76  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHAT 135

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + + +              +         ++  L+ G EG G+  + Q+ A 
Sbjct: 136 VAELLEWASDKGLTVVAIDNTPGCVPLET----AELPERCLLLFGQEGPGVTQEAQDAAM 191

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 192 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 221


>gi|226365015|ref|YP_002782798.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226243505|dbj|BAH53853.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 230

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 5/193 (2%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
            H  PV   P    + + G +  +   A       +   D   R   L + +++     N
Sbjct: 34  EHDTPVPADPRYDPELLAGGDRRNVVDAYRYWTREAIVADIDSRRHPLHVAIENFGHDAN 93

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A AF+   +    R   +    +       + H P +         + +    
Sbjct: 94  IGTVVRTANAFAAAAVHIVGRRRWNRRGAMVTDRYQHVLHHPDVDGLVDFARERDLTIVA 153

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                 S   +             L+ G EG G+  + +  A     +   G  +++N  
Sbjct: 154 VDNTPGSVPLET----ANLPRDCVLLFGQEGPGVTDQAKGVAAMTVSIAQFGSTRSINAG 209

Query: 267 NAAAVALYITQNH 279
            AA +A++     
Sbjct: 210 VAAGIAMHAWVRQ 222


>gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MPN_521
 gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae
           FH]
          Length = 166

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I+RS  AF  +  +            + ++     + +      + 
Sbjct: 8   IVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251
              ++         +   S +  P +  ++ D    +  + G E KGL     E  + + 
Sbjct: 68  EHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLMEQYSQNQ 127

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +   ++++N+SN  A  LY     
Sbjct: 128 VRIPIWNPVRSINLSNTVACVLYEYAKQ 155


>gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 194

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L   + + H         + ++          D    + G E  GL     +
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYAD-GDSHYFLFGREDTGLPEDFMR 141

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E A     + M    +++LNVSN   + +Y     
Sbjct: 142 EHAEKALRIPMNDEHVRSLNVSNTVCMVVYEALRQ 176


>gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           SIP3-4]
          Length = 258

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KIAL+ G E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 123 KIALVFGTEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 172


>gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 218

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 2/146 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     MVL+ + DPHNI A++R+A  F    +   +  +            G+ + +
Sbjct: 27  NRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSI--LKGSYKWM 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                      ++K+   G++    S+++   +     +  +A  LG+E  G  P T   
Sbjct: 85  SLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLAH 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     L   GI +++NVS A  V +
Sbjct: 145 ADYEFKLPQYGITESMNVSVAGGVLM 170


>gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 186

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEIHM 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLEAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N++N+ A+ L      
Sbjct: 121 DRNLRIPMSNNIRCYNLANSVAMVLLEALRQ 151


>gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
 gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
          Length = 156

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPG 258
             H    +    ++ +++            L+ G E  GL  +  +    T    L M  
Sbjct: 66  WDHLLPARVFAFTAQAERVYTDVRYRPGDVLLFGPEPTGLPGEVMDDPRVTDRLRLPMLP 125

Query: 259 IIKALNVSNAAAVALYITQNH 279
             +++N++N A+VA+Y     
Sbjct: 126 GRRSMNLANCASVAVYEAWRQ 146


>gi|226304893|ref|YP_002764851.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226184008|dbj|BAH32112.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 230

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG G+    +E A+    +   G  +++N   AA +A++    
Sbjct: 168 LPRECILLFGQEGPGVTEHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVR 221


>gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 171

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              KI L+LG E  G+  +T        H+ M G   +LNV+    +ALY  + 
Sbjct: 115 LKSKILLVLGNEKLGINSETLNRLDRSYHIKMFGTNSSLNVAQTLGIALYEIRR 168


>gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 246

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%)

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                 G   +  S ++ + L +    D IA+I G E +GL     + A  +  L     
Sbjct: 86  CGRIDHGDIPLHTSKNALQWLLETNPKDPIAIIFGREDRGLSNSELQIAQKIITLKTSEK 145

Query: 260 IKALNVSNAAAVALYITQ 277
             +LN+S+A A+ L+  +
Sbjct: 146 YPSLNLSHAVAIVLHEFK 163


>gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 267

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + K  L+ GAE  GL         ++  + +     +LN++ A  + LY  +
Sbjct: 120 HQKTGLLFGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWR 171


>gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
 gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
          Length = 258

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA + G E  GL  +  E  +++AH+       +LN+S A  V  Y  +
Sbjct: 124 IAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELR 172


>gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 178

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 6/154 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A      +       ++   L ++     + +    
Sbjct: 1   MTNHIVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFQTDDKHLKRAGLDYWDALDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPK-TQE 246
             +L   +  +       I   +         + + K    I L+ G E  GL      E
Sbjct: 61  HDDLKAFINYLDGRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPEAFMHE 120

Query: 247 TATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
                  L M    ++ LN+SN AA+ +Y     
Sbjct: 121 HEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQ 154


>gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae
           BGR1]
          Length = 284

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA + G E  GL  +  E  +++AH+       +LN+S A  V  Y  +
Sbjct: 149 IAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNLSQAIQVLAYELR 197


>gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC
           51142]
          Length = 247

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           N   AL+ G E +GL  +    A     +       +LN++ A AV  Y    
Sbjct: 109 NFNTALLFGPEDRGLNNEELNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQ 161


>gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
 gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
          Length = 167

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 1   MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           SNL   L  + +     I   +      E     ++   + G E  GL     +E     
Sbjct: 61  SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 149


>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 178

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 3/156 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + L+++LD++   +NIG++ R++ AF    I      +      + K+A GA 
Sbjct: 17  EFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGAT 76

Query: 185 EHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           + + +  + N       LQ+                       +N   AL+LG E KG++
Sbjct: 77  QTVDWAYVENTLEVVKDLQQQGVKVMSIEQAEDSISLKDFNPRQNQLYALVLGHEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  + +  +  +   G   +LN+S    + ++   
Sbjct: 137 QEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFM 172


>gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 205

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 2/146 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     MVL+ + DPHNI A++R+A  F    +   +  +            G+ + +
Sbjct: 14  NRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSI--LKGSYKWM 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                      ++K+   G++    S+++   +     +  +A  LG+E  G  P T   
Sbjct: 72  SLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLAH 131

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     L   GI +++NVS A  V +
Sbjct: 132 ADYEFKLPQYGITESMNVSVAGGVLM 157


>gi|218514243|ref|ZP_03511083.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli 8C-3]
          Length = 51

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           LG E  G+     E A +   + M    +++NV+ +AA+ +      
Sbjct: 1   LGRESAGVPDHVHERADARILIPMVEGQRSINVAVSAAMIVGEAMRQ 47


>gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 152

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYITQNH 279
             D    I G E +G+  +  +        + M   + ++LN++N+ A+ LY     
Sbjct: 91  YKDGDYFIFGREKEGIEKEILDKYKEKIYTIPMTNKLNRSLNLANSVAIVLYEGLRQ 147


>gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|294995137|ref|ZP_06800828.1| putative RNA methyltransferase [Mycobacterium tuberculosis 210]
          Length = 192

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175


>gi|289756447|ref|ZP_06515825.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289712011|gb|EFD76023.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|326902206|gb|EGE49139.1| RNA methyltransferase [Mycobacterium tuberculosis W-148]
          Length = 183

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175


>gi|289552629|ref|ZP_06441839.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|298523855|ref|ZP_07011264.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308231537|ref|ZP_07412811.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308369379|ref|ZP_07417558.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370389|ref|ZP_07421329.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371657|ref|ZP_07425698.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308372877|ref|ZP_07430230.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308373986|ref|ZP_07667687.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375143|ref|ZP_07442854.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376379|ref|ZP_07438642.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377409|ref|ZP_07479043.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308378621|ref|ZP_07483239.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379766|ref|ZP_07487475.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308395297|ref|ZP_07491976.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|289437261|gb|EFD19754.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|298493649|gb|EFI28943.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216979|gb|EFO76378.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308327821|gb|EFP16672.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308332174|gb|EFP21025.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335963|gb|EFP24814.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308339585|gb|EFP28436.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343439|gb|EFP32290.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308347331|gb|EFP36182.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308351275|gb|EFP40126.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355928|gb|EFP44779.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308359885|gb|EFP48736.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363786|gb|EFP52637.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308367456|gb|EFP56307.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323721233|gb|EGB30293.1| RNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|328457090|gb|AEB02513.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 216

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 154 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 208


>gi|302865196|ref|YP_003833833.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302568055|gb|ADL44257.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 207

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 55  RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPT 114

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I         +++   G   +  S   +      +   +  L+ G EG GL    +    
Sbjct: 115 IEEFVAWARDERLPVVGIDNLPGSRPMET----AVLPRRCVLLFGQEGPGLSAVARSACE 170

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  +   G  +++N   A+ +A++    
Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIR 199


>gi|260185247|ref|ZP_05762721.1| putative RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289445918|ref|ZP_06435662.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418876|gb|EFD16077.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 183

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175


>gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 244

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 168

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
            S+L   L  +       I   +      E     ++   + G E  GL     +E    
Sbjct: 61  HSDLEALLAFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LN+SN AA+ +Y     
Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYEALRQ 150


>gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
          Length = 263

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 130 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 179


>gi|219556197|ref|ZP_03535273.1| putative rna methyltransferase [Mycobacterium tuberculosis T17]
 gi|289568293|ref|ZP_06448520.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289542046|gb|EFD45695.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
          Length = 172

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 110 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 164


>gi|215444463|ref|ZP_03431215.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 199

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 137 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 191


>gi|215409889|ref|ZP_03418697.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|254549323|ref|ZP_05139770.1| RNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 199

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 137 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 191


>gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
 gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  +       +       +LN++ A     Y  +
Sbjct: 106 THPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157


>gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 244

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|254363345|ref|ZP_04979391.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|134148859|gb|EBA40904.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis str. Haarlem]
          Length = 220

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 212


>gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638]
 gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 244

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|15607521|ref|NP_214894.1| RNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15839764|ref|NP_334801.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31791557|ref|NP_854050.1| RNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636293|ref|YP_976516.1| putative rna methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|167968518|ref|ZP_02550795.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis H37Ra]
 gi|218752007|ref|ZP_03530803.1| putative rna methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|224988765|ref|YP_002643452.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289441759|ref|ZP_06431503.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289572965|ref|ZP_06453192.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289752409|ref|ZP_06511787.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289760491|ref|ZP_06519869.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
           GM 1503]
 gi|297632862|ref|ZP_06950642.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           4207]
 gi|297729837|ref|ZP_06958955.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           R506]
 gi|313657166|ref|ZP_07814046.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2909501|emb|CAA17386.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13879892|gb|AAK44615.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31617143|emb|CAD93250.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium bovis
           AF2122/97]
 gi|121491940|emb|CAL70403.1| Possible rna methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224771878|dbj|BAH24684.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289414678|gb|EFD11918.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289537396|gb|EFD41974.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289692996|gb|EFD60425.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289707997|gb|EFD72013.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
           GM 1503]
          Length = 183

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 121 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 175


>gi|148660146|ref|YP_001281669.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148821576|ref|YP_001286330.1| RNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215429200|ref|ZP_03427119.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|253797303|ref|YP_003030304.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|260199377|ref|ZP_05766868.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260203529|ref|ZP_05771020.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|148504298|gb|ABQ72107.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148720103|gb|ABR04728.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis F11]
 gi|253318806|gb|ACT23409.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
          Length = 220

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 212


>gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
 gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
          Length = 180

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + ++         +   ++                + G E KGL     ++       +
Sbjct: 77  EEFMEAASDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAIRI 136

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162


>gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 183

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 3/168 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +      +   + + + Q  +VL     P N G I R+  A +    I      P +   
Sbjct: 1   MWLFFYSNENQEKIMSQQNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRK 60

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     + +      +L D +++M    +      ++     E          + G 
Sbjct: 61  MKRAGLDYWDKLDISFYESLDDFMKQMDGRLYLIS-KFAEKVYSEENFSAEGPHYFMFGR 119

Query: 236 EGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           E  GL  +  ++       + M    +++LNVSN   + +Y       
Sbjct: 120 EDTGLPEEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 167


>gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 256

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +A++ G E +GL  +  +    +  +       +LN+S A  + LY 
Sbjct: 117 VAVVFGPEDRGLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYE 163


>gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
 gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
          Length = 246

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E +GL     +  + + ++       +LN+S A  + LY    +
Sbjct: 109 EKVAVVFGPEDRGLTNDETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKN 161


>gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114]
 gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +  +       +       +LN++ A     Y  +
Sbjct: 106 THPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157


>gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 28/70 (40%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   Q+ ++  +A++ G E  GL  +  +      ++       +LN++ 
Sbjct: 88  WPMVEPRECGERSVQQAEHASVAIVFGRERVGLTNEELQKCHYHLNIPTNPEYGSLNLAM 147

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 148 AVQLVSYEIR 157


>gi|229493085|ref|ZP_04386880.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121]
 gi|229320115|gb|EEN85941.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121]
          Length = 230

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG G+    +E A+    +   G  +++N   AA +A++    
Sbjct: 168 LPRECILLFGQEGPGVTDHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVR 221


>gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
 gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
          Length = 255

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + K+A++ G E  GL  +          +       +LN++ A  +  Y  +
Sbjct: 120 SGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIR 171


>gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 243

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A++ G E  GL     +      ++       +LN++ A     Y  +
Sbjct: 106 SHPVAILFGRERTGLTNDELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIR 157


>gi|229817083|ref|ZP_04447365.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
 gi|229784872|gb|EEP20986.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
          Length = 275

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++    
Sbjct: 209 PMETYRFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 268

Query: 279 H 279
            
Sbjct: 269 Q 269


>gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
 gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +N  +AL+ G E  GL     +T      +       +LN++ 
Sbjct: 88  WPMLEPRECGEKFVAEGQNSPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
 gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
          Length = 243

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ALI G E +GL  +    A     +       +LN++ + AV  Y    
Sbjct: 109 ALIFGPEDRGLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157


>gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
          Length = 167

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPDK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8801]
          Length = 243

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ALI G E +GL  +    A     +       +LN++ + AV  Y    
Sbjct: 109 ALIFGPEDRGLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157


>gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
 gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
          Length = 323

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           K   I +++G E  G+          +  L M G   +LNVS    +  YI  +HF 
Sbjct: 260 KYRPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSYILSHHFK 316


>gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
 gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
          Length = 180

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + ++         +   ++                + G E KGL     ++       +
Sbjct: 77  EEFMEAARDGQVHLVSKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAIRI 136

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 137 PMNDEHVRSLNVSNTVCMIVYEALRQ 162


>gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
           ND03]
          Length = 169

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 2/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S   +VL     P N G I R+  A +    I      P +   + ++     + +   
Sbjct: 1   MSCNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDIT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
              NL D + K H+     +   +D     E     +    + G E  GL     +E   
Sbjct: 61  YYDNLADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
               + M    +++LNVSN   + +Y     
Sbjct: 121 KAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 151


>gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
 gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
          Length = 182

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                           +  +VL     P N G I R+  A +    I      P     +
Sbjct: 1   MVVQPFIQENYHETQGRNHVVLFEPQIPANTGNIARTCAATNSPLHIIRPMGFPINDRKM 60

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++     + +      +L + L K           +  +   +      D    I G E
Sbjct: 61  KRAGLDYWDKLDIRFYDSLLEFLDKCQGQVHLVSKFAQKTYSEVNYADDQDH-YFIFGRE 119

Query: 237 GKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            KGL     +E  T    + M    +++LN+SN   + +Y     
Sbjct: 120 DKGLPEDFMREHVTKAIRIPMNDQHVRSLNLSNTVCMIVYEALRQ 164


>gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis
           DSM 16069]
          Length = 277

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A++ G E  GL  +  +      ++       +LN+++A  +  Y  +
Sbjct: 121 RPVAIMFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIR 171


>gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299]
 gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
                  A I G EG GL  + +       ++   G    +LNV+ A+A+ ++   
Sbjct: 87  HPFAQNTAFIAGNEGDGLTKQQKAICDGFVYIRQHGVGTASLNVAVASALVMHHFA 142


>gi|332292383|ref|YP_004430992.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170469|gb|AEE19724.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 153

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 7/155 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              D   N    + + +   P N+G + RSA       I T       +S+    +    
Sbjct: 1   MQPDNFTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQSSDTHNAVKAM 60

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +             + +   G +    +   +          +   +LGAE  GL  +
Sbjct: 61  PYYHYDTFDDFFKHLPKGVRIVGVELDDRAETLETFHH----PRRCVYLLGAEDHGLTNE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E +  +          +LNVS A ++ LY    
Sbjct: 117 AIEKSHFLIKFP---STLSLNVSVAGSIVLYDRTR 148


>gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum]
          Length = 1388

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     K  L+LG E  G+      T      +   GI+++LNV  A ++ ++     
Sbjct: 1323 HEMNLPFKCVLLLGNETSGIPHDLLSTMDICVEIKQLGIVRSLNVHVAGSLFIWEYTKQ 1381


>gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
 gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
          Length = 170

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 4   MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           S+L   L  +       I   +      E     ++   + G E  GL     +E     
Sbjct: 64  SDLEAFLAFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 123

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 124 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 152


>gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++A++ G E +GL  +  E  + +  +       +LN++ A  + LY 
Sbjct: 110 GRVAIVFGREDRGLTNEETEVCSRLVTIPTS-EASSLNLAQAVLILLYE 157


>gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
 gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
          Length = 186

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRM 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++          + G E  GL     +E  
Sbjct: 61  HDDLDAFLKTLGPNDEMYLISKFSSKNYAEVDYTDPKKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSNNIRCYNLSNSVAMVLLEALRQ 151


>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
 gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            ++ AL++G E  GL     E       +       ++N+S+A A+ LY  
Sbjct: 108 TNQCALVMGREDHGLYTSELELCQRFVTIPTENAYGSMNLSHATALLLYQA 158


>gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii]
          Length = 169

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +   + ++  L+V + + D  N+GAI+R A     DG++   R +        K++ G 
Sbjct: 7   WSEADLMSADRLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGT 66

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEG 237
           +  +P+ R+S+    L  +   GF    ++         E          K+AL++G EG
Sbjct: 67  VFALPWARLSDWCQGLGHLKEHGFTIAAMALSDDSVSLDEFAAQLRSRPRKVALLMGTEG 126

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNV 265
            GL       A  +  + M   + +LNV
Sbjct: 127 AGLSSHWVNQADVVVRIPMHHGVDSLNV 154


>gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR]
          Length = 240

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++AL+ G E  GL  +  + +    H+       +LN++ A     Y  +  
Sbjct: 106 QHQVALVFGRENSGLTNEELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQ 159


>gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 250

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +A++ G E  GL  +  +    + ++   G   +LN++ A  V  Y    
Sbjct: 109 GGVAVVFGPEDAGLSNQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFK 160


>gi|224369437|ref|YP_002603601.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
 gi|223692154|gb|ACN15437.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
          Length = 161

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
            +      +     IP        D    +            D+   L++     +   +
Sbjct: 49  YSRQPGDVTRTWTRIPLFHHDTFEDFYSHLPHDTRLIGVEMGDTAVALDRFDHPSRAVYL 108

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           LG E  GL P   E    +  L       +LNV+ A ++ +Y   +  +
Sbjct: 109 LGNEQLGLSPGVMEKCHRLVKLP---GAFSLNVAVAGSLVMYDRVSKIS 154


>gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine
           bacterium 580]
          Length = 248

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + KIAL+ G E  GL     +    + +++      +LN++ A  +  Y  +   ++
Sbjct: 112 SKKIALLFGNETNGLSNDEVKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSE 168


>gi|254777225|ref|ZP_05218741.1| spou rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+   T+  AT    +   G  +++N   AA +A++     
Sbjct: 156 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 210


>gi|118462459|ref|YP_883915.1| spou rRNA methylase family protein [Mycobacterium avium 104]
 gi|118163746|gb|ABK64643.1| spou rRNA methylase family protein [Mycobacterium avium 104]
          Length = 214

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+   T+  AT    +   G  +++N   AA +A++     
Sbjct: 152 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 206


>gi|41409957|ref|NP_962793.1| hypothetical protein MAP3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398790|gb|AAS06409.1| hypothetical protein MAP_3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+   T+  AT    +   G  +++N   AA +A++     
Sbjct: 157 LPRECLLVFGQEGPGITDDTRTGATLTVSIAQFGSTRSINAGVAAGIAMHAWIQQ 211


>gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 271

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +AL+ G E  GL     +    +  +       +LN++ A  V  Y   + 
Sbjct: 134 RQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYELFSQ 187


>gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
 gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
          Length = 241

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +      +E ++  +AL+ G E  GL     +T      +       +LN++ 
Sbjct: 88  WPMLEPRECGVKFVEEGQSAPVALVFGRERTGLTNDELQTCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|183980676|ref|YP_001848967.1| RNA methyltransferase [Mycobacterium marinum M]
 gi|183174002|gb|ACC39112.1| RNA methyltransferase [Mycobacterium marinum M]
          Length = 214

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+   T+  A     +   G  +++N   AA +A++     
Sbjct: 152 LPRDCLLVFGQEGPGITDDTRVGAVVTVSIAQFGSTRSINAGVAAGIAMHAWIRQ 206


>gi|326429925|gb|EGD75495.1| hypothetical protein PTSG_06570 [Salpingoeca sp. ATCC 50818]
          Length = 1687

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 28/100 (28%)

Query: 180  ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            +            +                    +     L Q    +   L+LG E KG
Sbjct: 1583 SERWQHFEFVEPANLTEWLRSMKQQGYTIVGVEQTADSVSLPQVKFPEYTVLLLGDEAKG 1642

Query: 240  LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +             +   G+ ++LNV  +A++ +Y     
Sbjct: 1643 IPADLLTETDVNVEIPQKGVTRSLNVHVSASLLIYKYAEQ 1682


>gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
 gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
          Length = 180

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L     +  +     +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      +L D + +M    +      ++          ++    + G E K
Sbjct: 61  AGLDYWDKLEIYFYESLEDFMSQMEGKLYLIS-KFAEKVYSEVDLSTDENHYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   QE +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTNDELQRCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 246

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L+LG E  GL  +       +A +       ALNV+NAAA+ LY  
Sbjct: 109 LVLGRESIGLTTEELSYCDIVATIPSSEDYPALNVANAAAIILYEF 154


>gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 167

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MANHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
              L + ++K+    +      ++                + G E KGL  +  +E    
Sbjct: 61  YDCLDEFMKKIDGQLYLIS-KFAEKVYSDADFTIEGNHYFLFGREDKGLPEEFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
           turicensis z3032]
 gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter
           turicensis z3032]
          Length = 246

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVR 157


>gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
 gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
          Length = 248

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +AL+ G E +GL          +  L       +LN+S+A AV L+    
Sbjct: 112 PVALVFGREDRGLSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELAR 162


>gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 242

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +   QE +   +AL+ G E  GL     +       +       +LN++ 
Sbjct: 88  WPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTNDELQRCHYHVCIPANPEYSSLNLAM 147

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 148 AVQTLSYEVR 157


>gi|15828342|ref|NP_302605.1| RNA methyltransferase [Mycobacterium leprae TN]
 gi|221230819|ref|YP_002504235.1| putative RNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13094035|emb|CAC32002.1| possible RNA methyltransferase [Mycobacterium leprae]
 gi|219933926|emb|CAR72584.1| possible RNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 182

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+  + +  A  +  +   G  +++N   AA +A++     
Sbjct: 120 LPRQCLLVFGQEGPGITDEARTGAAMIVSIAQFGSTRSINAGVAAGIAMHAWIRQ 174


>gi|319949900|ref|ZP_08023903.1| putative RNA methyltransferase [Dietzia cinnamea P4]
 gi|319436438|gb|EFV91555.1| putative RNA methyltransferase [Dietzia cinnamea P4]
          Length = 227

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++    
Sbjct: 169 LPRECVLLFGQEGPGVSDDARLRAARTVSIAQFGSTRSINAGVAAGIAMHAWIR 222


>gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
 gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
          Length = 169

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K H+     +   +D     E     +    + G E  GL     +E       +
Sbjct: 66  ADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 125

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151


>gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
 gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
          Length = 170

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 4   MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           SNL   L  + +     I   +      E     ++   + G E  GL     +E     
Sbjct: 64  SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 123

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 124 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 152


>gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 262

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E +GL       A  +  +       +LN+S+A A+ L+  + 
Sbjct: 125 ALVFGREDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRR 173


>gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 162

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVAL 273
             +   ++    +   ++ G E  G+  +          + M     ++LN+SN  A+  
Sbjct: 91  HGETHFDEISFKEGDFIMFGRESSGVPEEVHNR-HIGFRVPMIKSSTRSLNLSNTVAIVA 149

Query: 274 YITQNHF 280
           Y      
Sbjct: 150 YEALRQI 156


>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 463

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 91  FPVKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNS-------------QLLM 136
             ++TV    ++ + G     H G+ L+ + L    +D +                 + +
Sbjct: 242 VEIETVSKHDLNVLTGSPPRPHNGVVLDASALTPTPIDQLPRWVHGEGSSTVKGPAPVWL 301

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SN 194
            LD V DP N+GA+LRSA      G++   + S   S V++K+++GALE +    +   +
Sbjct: 302 ALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGALESMDVRSVGVMH 361

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                     W          +    + + +     L++G EG GLR   +   TSM  +
Sbjct: 362 RFLMRCVEDGWDVYGTAAEEGAADVADVDARGRPSVLVMGNEGAGLRTNVRRACTSMLRI 421

Query: 255 -------HMPGIIKALNVSNAAAVALYIT 276
                       + +LNVS A  V L+  
Sbjct: 422 AGGGGEGDDDDGVDSLNVSVATGVILHAM 450


>gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 171

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +   +  +   + +V D +  P NIG   R + +F  + I   +     E+  +  +A 
Sbjct: 6   HNDVENQQQKFPITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINTAR 65

Query: 182 GALE---HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             +    +  Y     L   L++  +                    K +KI L+LG+E  
Sbjct: 66  NTINQIEYQTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEKIVLLLGSERN 125

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+  +          + M G   ++NV ++ A+ LY   N   
Sbjct: 126 GI--ENINLVDETIAIPMYGRNSSMNVIHSLAITLYEITNQLK 166


>gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 251

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 92/252 (36%), Gaps = 14/252 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +++    +  +R   +     L G   +   L NP+ +I   +  ++  +    
Sbjct: 6   SKTNDHFRRWSDLS-SARGIKKHSEFILMGEKLIEEFLENPNFRIKGEIVHEDLKSVTMT 64

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              L     PV  +P    ++I   + V     L               ++ L V+  + 
Sbjct: 65  APKLKGQRIPVFKLPKALFNEI---DVVGTHYNLLVLEPKEIAPLTTAKAEGLEVISPLG 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA+ RS++AF    +I T+           K+++GAL  +P  +I    D +   
Sbjct: 122 DPSNLGALARSSLAFGASKMILTEESCSPYHPKAIKASAGALLKLPLFKIGKFADFVSNN 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                          + +        + + LG EG G     +        +     +++
Sbjct: 182 DQI-----YALDMKGESVANFKWPKNVRIALGEEGPGFS-GIKNL--QRLSVATQ-SVES 232

Query: 263 LNVSNAAAVALY 274
           LN + A ++ALY
Sbjct: 233 LNATVAGSIALY 244


>gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 181

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + +           +            +     + G E  GL     +E       +
Sbjct: 79  EDFITQCQGKLHLISKFADKVYSEETYAD-DQPHYFLFGREDTGLPEAFMREHTEKALRI 137

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 138 PMNDDHVRSLNVSNTVCMIVYEALRQ 163


>gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
 gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
          Length = 155

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 3/153 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ L+ L   + P N GAI+R          I            L ++    +E     
Sbjct: 1   MTKPLIALYQPDIPGNTGAIMRLGACMGIGIHIIGPAGFDLSDRALKRAGMDYIEMATLT 60

Query: 191 RISNLTDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           R     +      + G +       S+ S      +  + +  ++ G E  G   +  + 
Sbjct: 61  RHDGWEEFEAWRKAEGRRLVLMTTKSAVSYMDDTVQTLSAQDVVLFGRESVGAPERVHDA 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M    ++LN++ + A+        F
Sbjct: 121 ADLRLTIPMIEGRRSLNLAMSVAMVAGEINRRF 153


>gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 184

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 300

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 88/282 (31%), Gaps = 45/282 (15%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPV 93
            ++ +  ++YG+++V + L    RKI + +  KN                +        V
Sbjct: 17  QNKNDIDYIYGLNSVYSVLKKNERKIDKAIINKNIKRSKKIHKEAYDYILNTIKERNIQV 76

Query: 94  KTVPPQTIDKIVGKEAVHQG----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                  + ++VG    +                       N+ + + L +V D  N+G 
Sbjct: 77  VYKTKNEMCELVGGFPHNDIIIELYRYMKNYRHFINSKKTTNNNIYICLHNVYDNMNVGN 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVL----------------AKSASGALEHIPYIRIS 193
           I RS + F  + I   ++    E                      +         +I   
Sbjct: 137 ICRSVLFFGGESIFLKRKRKKGEHKNYIKINTPILHSSVGASEYLNFFHVNNMENFISSL 196

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                     S       +++  +    +  KN+K+ +ILG E KGL     + +    +
Sbjct: 197 KEKGFTILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKNSDICIY 256

Query: 254 L----------HMPGI------IKALNVSNAAAVALYITQNH 279
           +                     + +LNV+N  ++ L+   ++
Sbjct: 257 INNLFDEQNIQPNLKNTNDNIIVNSLNVNNVCSIILHHFHSN 298


>gi|331664149|ref|ZP_08365059.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
 gi|331059948|gb|EGI31925.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
          Length = 123

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              K+ L+LG E +GL    ++       +   G +  LN+S A  V L      
Sbjct: 66  LPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 120


>gi|117624802|ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
 gi|115513926|gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
          Length = 123

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              K+ L+LG E +GL    ++       +   G +  LN+S A  V L      
Sbjct: 66  LPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 120


>gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
 gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
          Length = 273

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++    IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 127 CMQVGTGDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183


>gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
 gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 242

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL     +       +       +LN++ A  V  Y  +
Sbjct: 108 PVALVFGRERVGLTNDELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|169631336|ref|YP_001704985.1| putative RNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169243303|emb|CAM64331.1| Putative RNA methyltransferase [Mycobacterium abscessus]
          Length = 224

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 5/195 (2%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDP 144
            L    P+   P    + +   +A +   A       +   D   R  +L + +++  + 
Sbjct: 26  ELERGLPLPEDPRYDPELLRDGDARNVVDAYRYWRREAIVADIDRRRHRLHIAIENFEND 85

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ++R+A AF+   +    R   +    +       L H               +  
Sbjct: 86  ANIGTVVRTANAFAVHTVHIVGRRRWNRRGAMVTDRYQHLMHHDSTDELLDYAKRAGLTV 145

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  S   +             L+ G EG G+   ++  A     +   G  +++N
Sbjct: 146 VAVDNVPGSVPLET----AELPVDCLLVFGQEGPGVTDASKSGAVMTVSIAQFGSTRSIN 201

Query: 265 VSNAAAVALYITQNH 279
              AA +A++     
Sbjct: 202 AGVAAGIAMHAWVRQ 216


>gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 158

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL       N+G + R+      +  +    +         + A         +   
Sbjct: 11  LHVVLFEPEKAGNVGNVARTCSVLGAELHLIRP-FGFHLHDREFRRAVMDYLQGVTLHEY 69

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                 Q       +    S+ + +   +        L+ G E +GL    ++       
Sbjct: 70  AGWSDFQAQLPDAARVFAFSTHATEYHTRAGFKRGDYLLFGPESRGLPVWLRDAL-PKLK 128

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L  PG  ++LN+S A   A +       +
Sbjct: 129 LPQPGRGRSLNLSVAVGAAAFEAGRQIER 157


>gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
 gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
          Length = 243

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +AL+ G E  GL          + H+        LN++ A  +  Y  
Sbjct: 109 PVALLFGREDSGLTNAQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYEL 157


>gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348]
 gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348]
          Length = 231

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                + + ++N K  L+ G E  GL  +       M H+        LN+S+A  + LY
Sbjct: 90  MPPWEIVKLMENRKTGLVFGRESVGLTREEILMTDIMVHIPANRSYPVLNLSHAVGIVLY 149

Query: 275 ITQN 278
               
Sbjct: 150 EIWK 153


>gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
 gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
          Length = 180

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L              +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNDKRKPVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      +L D + +M    +     +             +    + G E K
Sbjct: 61  AGLDYWDKLEIYFYDSLEDFMSQMKGQVYLISKFAEKVYSEANLAS-GEDQYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +AL+ G E  GL  +  +      H+       +LN++ A  V  Y
Sbjct: 110 VALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155


>gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 182

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +             +  +      +  ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGKLHLITKFADKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 139 PMNDQHVRSLNLSNTVCMIVYEALRQ 164


>gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 610

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHL---H-MPGIIKALNVSNAAAVAL 273
               L+LG EG+GL  K    A+    +         + +LNVS AAA+  
Sbjct: 528 KPCILVLGNEGEGLSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAALLC 578


>gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7]
 gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C7]
          Length = 234

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               N  + ++ G E  GL+ +  E    +  +        +N+S+A +V LY   
Sbjct: 101 HVELNGSLGIVFGREDDGLKNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYEIY 156


>gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 152

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGII-KALNVSNAAAVALYITQNH 279
             D    I G E +G+  +  +        + M   + ++LN++N+ A+ LY     
Sbjct: 91  YKDGDYFIFGREKEGIEKEILDKYKEKIYTIPMTKKLNRSLNLANSVAIVLYEGLRQ 147


>gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC
           5463]
          Length = 186

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +   R
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|269957913|ref|YP_003327702.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306594|gb|ACZ32144.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 283

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   L+LG E  GL    Q     + H+   G  ++LN   A A+A++     
Sbjct: 222 FALPASCVLVLGQESTGLTAPMQAACDVVLHITQHGSTRSLNAGAAGAIAMFAWALQ 278


>gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG
           18311]
 gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           CNRZ1066]
          Length = 184

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + S+  +VL     P N G I R+  A +    I      P +   + ++     + +  
Sbjct: 15  QMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDI 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
               NL D + K H+     +   +D     E     +    + G E  GL     +E  
Sbjct: 75  TYYDNLADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHP 134

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                + M    +++LNVSN   + +Y     
Sbjct: 135 EKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 166


>gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
 gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
          Length = 288

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ALI G E +GL       A     +        LN++ A  V  Y    +
Sbjct: 133 ALIFGPESRGLSNDELNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQY 182


>gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 216

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ + +    R   +    +       LEH   
Sbjct: 63  RRHSLHIAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLEHHDT 122

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +          ++          S   +         ++  L+ G EG G+  + QE+A 
Sbjct: 123 VTELMAWAREHEIAVVAIDNTPGSVPLET----AQLPERCLLLFGQEGPGVTAEAQESAE 178

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 179 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 208


>gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
 gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
          Length = 226

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              I L+ G E  GL  +  +    +  +        +N+S+A AV LY   
Sbjct: 104 RGNIGLVFGREDDGLYNEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYELY 155


>gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           crispatus ST1]
 gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus ST1]
 gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 186

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +   R
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLNAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 185

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLDTFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
 gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
          Length = 167

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MANHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D ++KM    +      ++                + G E KGL  +  +E    
Sbjct: 61  YDSLADFMEKMDGQLYLIS-KFAEKVYSDADFTTEGDHYFLFGREDKGLPEEFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 269

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++A++ G E +GL     E   ++  +       ++N++ A AV  Y  
Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEV 173


>gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
 gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
          Length = 710

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
               L+LG EG GL    +  A     +        I +LNVS AA +  +
Sbjct: 552 HPCLLVLGNEGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGLLCH 602



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK 94
           ++T+       YG   V AAL    RK++ L        R + D             P+ 
Sbjct: 304 KYTTAASQFL-YGRSVVKAALEQGRRKLYNLYIYGGENRRDNKDNTFLSRLAEKQGVPIT 362

Query: 95  TVPPQT--IDKIVGKEAVHQGL 114
            VP +   +   +     H G 
Sbjct: 363 IVPTEEQRLMDKMSMGRPHNGF 384


>gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 182

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +             ++ +      +  ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGKLHLITKFANKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 139 PMNDQHVRSLNLSNTVCMIVYEALRQ 164


>gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           helveticus H10]
          Length = 186

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +   R
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRR 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLNAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|254369775|ref|ZP_04985785.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122734|gb|EDO66863.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 365

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +A L M G + +LNVS A  +ALY T     
Sbjct: 329 CDFLAKLPMLGEVFSLNVSVATGIALYETVRQRT 362


>gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 262

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-IIK---ALNVSNAAAVALYITQ 277
           KIAL+ G+E  GL  +      ++  + M         ++N+  AAAV LY   
Sbjct: 123 KIALLFGSEKTGLSNEELSHCHALLTIPMNTLTADHHLSMNLGQAAAVCLYQLA 176


>gi|327405077|ref|YP_004345915.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327320585|gb|AEA45077.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 158

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
                   +     IPY     L D    +      T    ++  + L       +   +
Sbjct: 45  YKKQTSDVTRTWARIPYFHYDTLEDLCNNIPYDCCLTAIELTEGAEFLHDFEHPKRAIYL 104

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           LG+E +GL     E    +  L       +LNV+   ++ L+   
Sbjct: 105 LGSEDQGLPDSVLEKCRKVIKLPGN---SSLNVAVTGSIVLHDRA 146


>gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
 gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
          Length = 248

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL             +       +LN++ A     Y  +
Sbjct: 108 PVAIVFGRENSGLTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIR 157


>gi|328875258|gb|EGG23623.1| TAR RNA loop binding protein [Dictyostelium fasciculatum]
          Length = 1627

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 59/182 (32%), Gaps = 4/182 (2%)

Query: 96   VPPQTI--DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            V        +  G +      A          +D      +++V   V+   N+  I R+
Sbjct: 1442 VDADDFIESQPTGYQKKILPWADIEEETRHNLMDQRSRQSIIIVATFVDKIPNLAGIART 1501

Query: 154  AVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLTDALQKMHSWGFQTIG 211
               F+ + ++ + R    E      S S             +     + K          
Sbjct: 1502 GEIFNIESLVVSNRRIMKEVMFQQISVSAERWLPIEEVSEENLTDYLMSKKSEGYSLLGI 1561

Query: 212  LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              + +   + +    +K  L+LG E +G+  +          +   G++++LNV  + ++
Sbjct: 1562 EQTSTSNCITEFQFPNKCVLLLGKEKEGIPTEYINLLDKCIEIPQLGVLRSLNVHVSGSI 1621

Query: 272  AL 273
             +
Sbjct: 1622 MI 1623


>gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
 gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
          Length = 180

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L              +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNDKRKPIMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      NL D + +M    +      ++          ++    + G E K
Sbjct: 61  AGLDYWDKLEIHFYDNLADFMSQMKEKLYLIS-KFAEKVYSEADLSTDEDHYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 242

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             KIALI G E  GL  +         ++      ++LN++ A  +A Y  +
Sbjct: 108 QHKIALIFGRERIGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIR 159


>gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
 gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
          Length = 265

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +  +++G E  G+ P+    A S      + + G   +LNVS AA + L      
Sbjct: 201 YPFPPEGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRA 260

Query: 280 FAK 282
             +
Sbjct: 261 LTR 263


>gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 265

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++  +++G E  G+ P+    A S      + + G   +LNVS AA + L      
Sbjct: 201 YTFPEQGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWSRA 260

Query: 280 FAK 282
             +
Sbjct: 261 LTR 263


>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 253

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 73/247 (29%), Gaps = 30/247 (12%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N  R  F+  A   A + +   A       V  V    ++ + G    HQG  L    
Sbjct: 8   LANNKRT-FRSSAKNEASSEILTLAQKIESLDVVEVDKGVLNTLCG-NRPHQGFVLRCGG 65

Query: 121 LLSPTL-----------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           L    L                  + + LD V DP N+GA+LRSA        I     +
Sbjct: 66  LEFEPLRGSSSLPSASLAGKDGPLVWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKN 125

Query: 170 PSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            S       +AS        +             +   W                +    
Sbjct: 126 SSPLTTTVSAASAGALEFMTVYSTSNLPKMLNRAREDGWRVLGAAADIPDSGGAARSETG 185

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH--------------MPGIIKALNVSNAAAVA 272
               L+LG+EG+GLR     + +    +                   + +LNVS    + 
Sbjct: 186 KPTILVLGSEGRGLRTWVARSCSGFVKVPGGLNMAASDNDEDATQAGVDSLNVSVTGGIL 245

Query: 273 LYITQNH 279
           L+   ++
Sbjct: 246 LWHFLSN 252


>gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           LMD-9]
 gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus
           LMD-9]
          Length = 169

 Score = 63.3 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K H+     +   +D     E     +    + G E  GL     +E       +
Sbjct: 66  ADFMSKNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 125

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 126 PMNDEHVRSLNVSNTVCMIVYEALRQ 151


>gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 170

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        +   + ++     EH+  ++
Sbjct: 1   MTNHIVLFEPLMPANTGNIARTTAGTNAVLHLIEPLGFDLDDKHVKRAGLDYWEHVQLVK 60

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
                            +     ++                 + G E  GL     ++  
Sbjct: 61  HDSLPDFLDTLGEQDHLYLVSKFANMDYTQPNYGETEGDHYFLFGKETTGLPEVFMRQNP 120

Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
                +      I++LN+SN  A+ LY     
Sbjct: 121 EKAIRIPQNDTHIRSLNLSNTVAIVLYEALRQ 152


>gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 273

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++  ++ GAEG GL  K  + A  + ++   G ++++N   AAAV+++     
Sbjct: 208 YEFPERCLMLFGAEGPGLSSKALDLADDVVYISQFGSVRSINAGAAAAVSMHAWIAQ 264


>gi|323453231|gb|EGB09103.1| hypothetical protein AURANDRAFT_25148 [Aureococcus anophagefferens]
          Length = 155

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                 L+LG E +G+     +       +   G++++LNV  + A+
Sbjct: 95  LPSPAVLLLGREKEGVPGDLMDLCDVCVEIPQLGVVRSLNVHVSGAL 141


>gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 179

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + S+  +VL     P N G I R+  A +    I      P +   + ++     + +  
Sbjct: 10  QMSRNHIVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDI 69

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
               NL D + K H+     +   +D     E     +    + G E  GL     +E  
Sbjct: 70  TYYDNLADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHP 129

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                + M    +++LNVSN   + +Y     
Sbjct: 130 EKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 161


>gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 240

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++ G EG GL  +       +  +        +N+++AAA+  Y      
Sbjct: 116 TFILFGREGDGLSNEEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYELFRDR 167


>gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
 gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
          Length = 231

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +   + ++   +    N KIA + G E  G   +  +    +  +        +N+
Sbjct: 88  QHIRMPAYTPAEIRDKFRETNGKIAFLFGREDNGFTREELKRCDMIMTIPTSEKYPVMNI 147

Query: 266 SNAAAVALYITQN 278
           S+AA +A+Y   N
Sbjct: 148 SHAATIAMYEMSN 160


>gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 196

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                + L       N G I R+  A +    +            L ++     + +  +
Sbjct: 26  YHMNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIV 85

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQET 247
              NL D +  +   G   +          + +  +DK     + G E  GL  +   E 
Sbjct: 86  YHKNLQDFMNSIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEH 145

Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                 + M    +++LN+SN A + +Y     
Sbjct: 146 RDECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 178


>gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 223

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H P 
Sbjct: 70  RRHALHVAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHPD 129

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +        + +              +         +K  L+ G EG G+    Q+ A 
Sbjct: 130 TQSLVDWALSEGLTIVAIDNTPGCIPLET----AELPEKCILLFGQEGPGVTQAAQKGAL 185

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 186 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 215


>gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 304

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +++AL+ G E +GL  +       +  +       +LN++ A AV  Y  
Sbjct: 120 NRVALLFGPEDRGLTNEDLYLCHQLTTIPTA-DFSSLNLAQAVAVLCYEL 168


>gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 173

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK----SASGALEHIP 188
            + +VL     P N G I+R+  A      I        +   L +         +EH  
Sbjct: 1   MINIVLFQPEIPPNTGNIIRTCKATQAKLHIIKPIAFDLDPKYLKRSAAGWILEDIEHEV 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
           Y    +      +   +     G  + S    ++   ND + ++ G E  G+  K  +  
Sbjct: 61  YETYDDFLKKHSEKSIYYLTRYGKINYSDVNFKKYQNNDDLFVMFGTESTGIPKKILKNN 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +   + M   +++LN++N   +  Y  Q  + 
Sbjct: 121 LENCLRIPMDKDMRSLNLANTVFLIAYEIQRQWN 154


>gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 194

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + A +LG E   L P   E    +  + M   I   NV  A A+ +Y   
Sbjct: 91  FRHPSRAAYVLGPERDSLSPALLERCDHVVKIPMSFCI---NVGVAGALVMYDRM 142


>gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
 gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
          Length = 170

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     + G E  GL     +E       + M   I+A N++N+ A+ L+     
Sbjct: 93  YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
          Length = 187

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 21  MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 80

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           S+L   L  +       I   +      E     ++   + G E  GL     +E     
Sbjct: 81  SDLEAFLTFLGDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKC 140

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 141 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 169


>gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
 gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
          Length = 170

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     + G E  GL     +E       + M   I+A N++N+ A+ L+     
Sbjct: 93  YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 170

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAV 271
           +                 + G E  GL     ++       +      I++LN+SN  A+
Sbjct: 85  NMDYTQPNYMQMQGDQYFLFGKETTGLPEVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAI 144

Query: 272 ALYITQNH 279
            L+     
Sbjct: 145 VLFEALRQ 152


>gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 237

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 84  RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHES 143

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       A + +              +         ++  L+ G EG G+    Q+ A 
Sbjct: 144 VEKLIAWAAEEGLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVTQAAQDAAV 199

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 200 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 229


>gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
 gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
          Length = 245

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +AL+ G E  GL     +   +   +       +LN++ +  V  Y  +
Sbjct: 110 GPVALVFGREHSGLTNAELDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALR 160


>gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 198

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  A +LG E   L P   E  T +  +       +LN+S A A+ LY     
Sbjct: 102 FRHPANAAYVLGPERSSLSPALLERCTHVVRIPTRF---SLNLSVAGALVLYDRLLQ 155


>gi|111226655|ref|XP_641892.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            discoideum AX4]
 gi|90970700|gb|EAL67904.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            discoideum AX4]
          Length = 1680

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 2/144 (1%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIR 191
            +++    + +  NI  ++R+   F+ + +        S  +   ++ SA   +  I   +
Sbjct: 1524 IIVCGTLIENTPNIAGLIRTCEIFNVEEVAIPNNKLLSDPQFQRVSVSAEKWVPTIEVTK 1583

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             + L     K            +   K L      +K  L+LG E  G+  +        
Sbjct: 1584 PNLLDYLKLKKKQGYSILGVEQTSQSKRLSSFQFPNKCLLLLGQEQNGIPAEYLSIIDYA 1643

Query: 252  AHLHMPGIIKALNVSNAAAVALYI 275
              +   G I++LNV  + ++ ++ 
Sbjct: 1644 VEIEQLGQIRSLNVHVSGSIVIWE 1667


>gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       LEH P 
Sbjct: 77  RRHPLHVAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLEHHPD 136

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    +      +          S   +         ++  L+ G EG G+  + +  A 
Sbjct: 137 VHSLLVWALRNDLTVVAIDNTPGSVPLET----AQLPERCLLLFGQEGPGVTDEARAGAL 192

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 193 MTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 222


>gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 241

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 235

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +AL+ G E  GL  +  +    + H+       +LN++ A  +  Y    
Sbjct: 105 GPVALLFGRENFGLFNEELDRCHYVLHIPTAPDYASLNLAQAVLLVAYELFQ 156


>gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20]
 gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 241

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 239

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                +     +  + +I +  G E  GL+ +  E       +    I   +N+S A AV
Sbjct: 89  PMMPWELAEALQGYSGRIGIFFGRESIGLKNEELERMDLTVTIPTSEIYPVMNLSQAVAV 148

Query: 272 ALYITQNHFAK 282
            LY       K
Sbjct: 149 ILYELAKGRRK 159


>gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 242

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL     E  +    +       +LN+  A  +  Y  +
Sbjct: 111 KGDVALVFGTEMSGLTNDEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELR 162


>gi|328712534|ref|XP_003244835.1| PREDICTED: hypothetical protein LOC100569722 [Acyrthosiphon pisum]
          Length = 140

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAVA 272
                   K   + LI+G E  GL  +     +       ++ +   I++LN + A  + 
Sbjct: 56  PYYEIDYCKITPLILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGIL 115

Query: 273 LYITQNH 279
            +  +  
Sbjct: 116 CFEAKKQ 122


>gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 246

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A++ G E  GL  +  +      ++       +LN++ A     Y  +
Sbjct: 106 HHNVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVR 157


>gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
 gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
          Length = 168

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    +       ++   L ++       +    
Sbjct: 1   MMNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
            SNL   L  + +     I   +      E     ++   + G E  GL     +E    
Sbjct: 61  HSNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LN+SN AA+ +Y +   
Sbjct: 121 CLRIPMNDEHVRSLNLSNTAAMIVYESLRQ 150


>gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 241

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
 gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
          Length = 170

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     + G E  GL     +E       + M   I+A N++N+ A+ L+     
Sbjct: 93  YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
 gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
          Length = 506

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----------IIKALNVSNAAAVAL 273
                L+LG EG GL P+ +  A     +                + +LNVS AAA+ +
Sbjct: 412 TAPTVLMLGNEGTGLLPRIKAQADGFVSIPGARIRPDMGINDAARVDSLNVSVAAALLM 470



 Score = 42.1 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK--TVPPQ 99
           + F+YG+  V AAL    RK++ L   + A   L  +        L     VK       
Sbjct: 160 SEFIYGLSAVEAALRCTRRKLYMLYIYQAAGEELSPERIALRKLALARGIHVKMAFAGWD 219

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT 125
            I   +     H GL LE +P+    
Sbjct: 220 RIMDKMSTGRPHNGLILEASPMPQVP 245


>gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 241

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 256

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               AL+ G E  GL     +    + H+       +LN+  A  V  Y  
Sbjct: 110 TGDCALLFGRERTGLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYEL 160


>gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 185

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60

Query: 192 ISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +          +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLETFLNTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
 gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
          Length = 338

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQNHFAK 282
           IAL+ G E  GL  +     T    +       +LNVS+A A+AL      Y       K
Sbjct: 128 IALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLRRVHK 187


>gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
 gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380
 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae]
 gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3031]
 gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
          Length = 241

 Score = 62.9 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323]
 gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC
           33323]
          Length = 209

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 3/152 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I R+    +    +        ++  + ++     + +   
Sbjct: 24  FMTNHVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIR 83

Query: 191 RISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247
              +L   L+    +   +     SS +   ++    N     + G E  GL     +E 
Sbjct: 84  MHDDLDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREY 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   I+  N+SN+ A+ L      
Sbjct: 144 YDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 175


>gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
 gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
          Length = 330

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+ L+ G E  GL  +  +    +  ++      +LN++ A  V  Y   + 
Sbjct: 197 EKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 249


>gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum
           borinquense DSM 11551]
 gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum
           borinquense DSM 11551]
          Length = 249

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K AL+ G EG+GL          +  +        LN+  AA + +Y  +
Sbjct: 113 KTALVFGREGRGLNNDELARLDEICSIPASDDYPVLNLGQAATILMYELR 162


>gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6]
 gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6]
          Length = 180

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L        +     +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNGKRKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      +L D + +M    +      ++          N+    + G E K
Sbjct: 61  AGLDYWDKLEIYFYESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5]
 gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C5]
          Length = 254

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               N ++ ++ G E  GL+ +  E    +  +        +N+S+A +V LY   
Sbjct: 121 HVELNGRLGIVFGREDDGLKNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYEIY 176


>gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 150

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        E + L ++       +      + 
Sbjct: 1   VVLVSPQIPGNTGTIARTCAASRVPLHLVGPLGFTLEDSQLKRAGLDYCVCVRVHDDWDA 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS---MA 252
             A   +       +     ++   E+        L+ GAE  GL  +  +       + 
Sbjct: 61  FYAYWSVDLGAPGRLVAKFGARPHAEEGAYLPGDWLLFGAETTGLPDEAHDACARSGGIR 120

Query: 253 HLHMPGI-IKALNVSNAAAVALYITQNHF 280
            + +    +++LN++ +A V +Y      
Sbjct: 121 RIPIDEDHVRSLNLAVSAGVGVYEAIRQI 149


>gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4]
 gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
 gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LGAS_1346
 gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4]
 gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
          Length = 185

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+    +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLDAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 167

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             NL D + +M    +      ++          ++    + G E KGL     +E   +
Sbjct: 61  YDNLADFMSQMKGQVYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPET 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 242

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  IA + G E  GL  +  +       +       +LN++ A     Y  +
Sbjct: 106 SHPIAFVFGRERVGLTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEAR 157


>gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 217

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 24/70 (34%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  +    E +   +AL+ G E  GL  +  +       +       +LN++ 
Sbjct: 62  WPMIEPRECGEKFAIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNLAM 121

Query: 268 AAAVALYITQ 277
           A     Y  +
Sbjct: 122 AVQTLSYEVR 131


>gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 265

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L+ G E  GL     +    +  +       +LN++ A  V  Y   +   +
Sbjct: 138 LVFGNETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYELFSQVNQ 189


>gi|301096946|ref|XP_002897569.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107029|gb|EEY65081.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 719

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L LG E +G+  +  +       +   G++++LNV  +  + L+     
Sbjct: 658 MVLALGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGPLVLWEYTQQ 708


>gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 79  RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHHES 138

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       A + +              +         ++  L+ G EG G+    Q+ A 
Sbjct: 139 VEKLIAWAAEEGLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVTQAAQDAAV 194

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 195 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 224


>gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MC40-6]
          Length = 273

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183


>gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 152

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL H   P N GA+ R+ VA   + ++        +   + +S      HI  +  
Sbjct: 1   MTAIVLVHPEIPGNTGAVGRTCVALDMELVLIHPLGFAIDDKRVKRSGLDYWPHIRLVEC 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
           ++    L +      Q       + +   +        L+ G E KGL           M
Sbjct: 61  ASWDAFLAERAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQGIVAAHRAQM 120

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQN-HFA 281
             L M    +++LN++N  A A Y       +
Sbjct: 121 VSLPMRSDKVRSLNLANTVAAAAYQAMRGQLS 152


>gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           AMMD]
          Length = 273

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183


>gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           vietnamiensis G4]
          Length = 276

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 133 GDIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183


>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
 gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
          Length = 241

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL          + H+       +LN+++A  V  Y  +
Sbjct: 111 QHPVALLFGTETSGLTTAEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELR 162


>gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601]
 gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 250

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   K + +A+I G E +GL       A     +       +LN+S+A ++ LY  
Sbjct: 104 FDWTLSFNKLNNLAIIFGREDRGLTNSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYEL 163

Query: 277 QNHFAK 282
                K
Sbjct: 164 NKSSKK 169


>gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 279

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 90/237 (37%), Gaps = 13/237 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTI 101
              +   + G+  VSA   +   ++ +L   +     +     A      P + V    +
Sbjct: 31  ESRKLFRVAGLAAVSALFTHEPERVERLFFDERLKPAVGAFCKAMAAARKPYRMVEADEL 90

Query: 102 DKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            K+ G       +AL       L  T  A R ++ L++LD V +PHN+GAILR+A  F  
Sbjct: 91  AKVAGTVLHGGVVALMAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFFGL 150

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++ +     +  +  A   +        +  +    A+ K      +  G + D  +P
Sbjct: 151 PRVLVSDHPGQALPSEAAYRVAEGGFEWVALERAPALPAVLKRLRASHRLFGTALDQSRP 210

Query: 220 ---------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                       +      A++LG E  G+ P T     ++  +   G +++LNV+ 
Sbjct: 211 AVDAGALTGWRGKADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAA 267


>gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
 gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
          Length = 187

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 2/149 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A +    +       ++   L ++       +     
Sbjct: 21  MNHIVLFEPLIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYH 80

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
           SNL   L  + +     I   +      E     ++   + G E  GL     +E     
Sbjct: 81  SNLEAFLTFLGNRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKC 140

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 141 LRIPMNDEHVRSLNLSNTAAMIVYEALRQ 169


>gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 295

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 16/241 (6%)

Query: 47  ENLFLYGV--H---------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ G+  H          ++AA+ +  R             R+ ++      +    
Sbjct: 47  DSFYIEGLCTHLASIYPADTAITAAVES-YRVALHAGVLTAGDYRVLFNTLRHALYRQSG 105

Query: 96  VPPQTIDKIVGKEAVHQGLALE--TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           V P   D I   +    G      TAP  +  +     +             +I A    
Sbjct: 106 VQPSEWDLIAPGQRYGTGTPKHDTTAPNPNTAIPTPDAAVRPFYPGVYVYAEDIRAPFNL 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F        ++   SE  V  +    A             +            +   
Sbjct: 166 GSIFRTAEAFGAEKLLLSEGCVSPEQ-PRAQRSAMGCTRFLPWEYCPLGSMPAGLPVFAL 224

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVA 272
                P+       +  ++LG+E  GL  +  + A++ +  + M GI  +LNV+ A  + 
Sbjct: 225 ETGGTPITSFPFPKQGIVLLGSEELGLSAEALKRASAGIVSIPMKGIKASLNVAVAFGIL 284

Query: 273 L 273
           +
Sbjct: 285 M 285


>gi|240172151|ref|ZP_04750810.1| spou rRNA methylase family protein [Mycobacterium kansasii ATCC
           12478]
          Length = 218

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  L+ G EG G+    +  A+    +   G  +++N   AA +A++     
Sbjct: 156 LPRECLLLFGQEGPGITADARAGASVTLSIAQFGSTRSINAGVAAGIAMHAWIRQ 210


>gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
 gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
          Length = 338

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQNHFAK 282
           IAL+ G E  GL  +     T    +       +LNVS+A A+AL      Y       K
Sbjct: 128 IALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLRRVHK 187


>gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 241

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
 gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
          Length = 162

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 7/152 (4%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +          + + +  +  NIG + RSA       I T  +    +        +   
Sbjct: 5   SHKYKNQGFFGIGIMNNVNGLNIGTLWRSAYIMGASYIFTIDKKYKKQM----SDVTHTW 60

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + IP     N  D      +         ++    +      D+   +LG E  GL PK 
Sbjct: 61  KKIPLYHYKNFDDFYDNQPTATRIIAVELTEDAIDIADYEHPDQACYLLGNEQAGLAPKV 120

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +    +  L       +LNV+ A ++ +Y  
Sbjct: 121 LKRCHGIVKLPGYF---SLNVAVAGSILMYDR 149


>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 202

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 16  KDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           ++ H  K      +   K+ +    K +   +    F+ G H V  AL      + +L+ 
Sbjct: 7   RELHIMKNIDSVQNPRVKQWKKLQTK-KERDKKGLFFVEGFHLVEEALKAG--IVTELIV 63

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +       DW  N      +  VP   +  +   E      A+         L
Sbjct: 64  SDQTDLPKDWTVN---DVEMYIVPEAIVKILRETETTQGVFAVCEKHEKEVAL 113


>gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 172

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     +      I+ALN+SN+ A+ +Y     
Sbjct: 104 FLFGKETTGLPEAFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQ 154


>gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 170

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +        +   + ++     +H+  ++
Sbjct: 1   MTNHIVLFEPLMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVK 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRP-KTQETA 248
             +L D L  +       +     ++   +     +      + G E  GL     ++  
Sbjct: 61  HPSLPDFLDTLAETDNLYLVSKFANQDYTQPNYAQNDTDNYFLFGKETTGLPEVFMRQNP 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                +      +++LN+SN  A+ LY     
Sbjct: 121 EKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQ 152


>gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
 gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
          Length = 268

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E  GL     +    +  +       +LN++ A  V  Y   + 
Sbjct: 139 VALVFGNETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCYEIFSQ 189


>gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
           CGSP14]
          Length = 180

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L     +  +     +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      +L D + +M    +      ++          ++    + G E K
Sbjct: 61  AGLDYWDKLEIYFYESLEDFISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 238

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             +++VL     P NIG++ R    F  D +               + A  A   +    
Sbjct: 1   MTVVVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQAT 60

Query: 192 ISN--------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           I           +  +          I L +           +   AL+ G E +GL   
Sbjct: 61  IHPDLEAAIGDCSRVIATCGRLDHGGIPLQTPDTAINWLLAGDPPHALVFGREDRGLTND 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  LH      +LN+S+A AV L+    H
Sbjct: 121 ELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARH 156


>gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
 gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
          Length = 244

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL+ G E +GL  +    +  +  L       +LN+S+A AV L+  Q 
Sbjct: 109 VALVFGREDRGLSNEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQR 158


>gi|328541799|ref|YP_004301908.1| TRNA/rRNA methyltransferase (SpoU) [polymorphum gilvum SL003B-26A1]
 gi|326411551|gb|ADZ68614.1| TRNA/rRNA methyltransferase (SpoU) [Polymorphum gilvum SL003B-26A1]
          Length = 181

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   + A +LG E   L P        +  +     I   NV+ A A+ LY       +
Sbjct: 91  FMHPLRAAYVLGPERGSLSPAMLARCDHVVKIPTRFCI---NVATAGAIVLYDRHRALGR 147


>gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533]
 gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533]
 gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 185

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 46/151 (30%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +    
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRM 60

Query: 192 ISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +          +   +     SS +   ++    N     + G E  GL     +E  
Sbjct: 61  HDDLEAFLNTLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
          Length = 244

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 105 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELR 157


>gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 241

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 102 YKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
 gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
          Length = 170

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAV 271
           +      +          + G E  GL     ++       +      I++LN+SN  A+
Sbjct: 85  NMDYTQPDYAESQGDHYFLFGKETTGLPEVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAI 144

Query: 272 ALYITQNH 279
            LY     
Sbjct: 145 VLYEALRQ 152


>gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8]
 gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 244

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +          ++AL+ G E  GL  +  E A  + ++       +LN++ A  V  Y 
Sbjct: 98  WEVADRVAAFPGEVALVFGRETFGLTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYE 157

Query: 276 TQNHFAK 282
                 K
Sbjct: 158 LFKRQGK 164


>gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 170

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +        +   + ++     +H+  ++
Sbjct: 1   MTNHIVLFEPLMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVK 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRP-KTQETA 248
              L D L  +       +     ++   +     +      + G E  GL     ++  
Sbjct: 61  HPGLPDFLDTLAETDNLYLVSKFANQDYTQPNYAQNDTDNYFLFGKETTGLPEVFMRQNP 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                +      +++LN+SN  A+ LY     
Sbjct: 121 EKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQ 152


>gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
 gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
          Length = 179

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 5/154 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+++LD++   +NIG++ R+A AF  + I      +      + K+A GA E + +  +
Sbjct: 26  PLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAWEHV 85

Query: 193 SNLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            N  D +   +                     +  K+   A++ G E KG++      + 
Sbjct: 86  ENTEDLIVSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEVKGVQQTVVTESD 145

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN--HFA 281
            +  +   G   +LN+S +  V ++        +
Sbjct: 146 VVIEIPQYGTKHSLNISVSTGVVVWDFFKKMQLS 179


>gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07]
          Length = 243

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K  K  ++ G E  GL  +  +       +       +LN+S+A  +  +  + 
Sbjct: 111 KTTKTGIVFGREDNGLSNEELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRK 164


>gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 249

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   K + +A+I G E +GL       A    ++       +LN+S+A ++ LY  
Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163

Query: 277 QNHFAK 282
                K
Sbjct: 164 NKSSKK 169


>gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 180

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 3/165 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L     +  +     +VL     P N G I R+  A +    I      P +   + +
Sbjct: 1   MWLFFCNGERKQVMTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKR 60

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +     + +      +L D + +M    +      ++          ++    + G E K
Sbjct: 61  AGLDYWDKLEIYFYESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDK 119

Query: 239 GLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           GL     +E       + M    +++LNVSN   + +Y       
Sbjct: 120 GLPEDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 164


>gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894]
          Length = 347

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 12/262 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLLATK 75
           A    +     + +   ++   T +       G   V   L      +      ++L  +
Sbjct: 7   AIDSADDPRIAEFRDIRER-DLTGRDNRFVAEGT-VVLRMLADAHAQDRGFSAEKILLLR 64

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131
           N +  +                           ++                +  LDA+  
Sbjct: 65  NRVDGVLPILERLPGRCAGLCRRGRCFSTASSVSICIAAFSRSGRREDRGEAALLDALPE 124

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++V   +++  N G++ R+A AF  D ++  +           + + G++  +PY R
Sbjct: 125 RALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPYRR 184

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                D L  +   GF    LS   +  +     + ++AL++G EG+GL           
Sbjct: 185 GGKALDVLLALAERGFAIWTLSPHGETDIRAIPASARMALVVGTEGEGLPEALLARF-QS 243

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
           A +     + +LN + A  +A 
Sbjct: 244 ARIPQSEELDSLNAATATGIAF 265


>gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 178

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-----RYSPSESAVLAKSASGALEHI 187
            L +VL       N   I+RS  A      I             + A   +  S     +
Sbjct: 1   MLNIVLYQPEISPNTANIIRSCYALGAKLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               +            +  +    S D      +  K+  I  + G E  G+  +  + 
Sbjct: 61  HDSYLDFYNKYKNANVFYITRYGLKSYDKVDFKNEYSKDKNIFFMFGRESTGIDKEILKN 120

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M   ++++N++N   +  +       
Sbjct: 121 NIDKCLRIPMVSKMRSINLANTVCIVGFEFMRQMN 155


>gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 167

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D +++M    +     +           ++     + G E KGL  +  +     
Sbjct: 61  YDSLEDFMEQMDGRLYLISKFAEKVYSEENFAAESSH-YFMFGREDKGLPEEFMRRYPEK 119

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSNA  + +Y       
Sbjct: 120 ALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 151


>gi|148253796|ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146405969|gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 46/131 (35%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR          I              ++    L+H+ + R  + 
Sbjct: 3   IALYQPDIPQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLAWRRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +       + G + +  ++ +              L+LG E  G+     E A +   + 
Sbjct: 63  SAFEDWRAAQGHRLLLFTTKAATSYLDFSYKADDILLLGRESAGVPDTVAEVADARLRIP 122

Query: 256 MPGIIKALNVS 266
           +   +++LNV+
Sbjct: 123 LRPGLRSLNVA 133


>gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 268

 Score = 62.5 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL+ G E  GL  +       +  +       +LN++ A  V  Y   +  
Sbjct: 128 VALVFGNETFGLSIEEAGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELFSQL 179


>gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 247

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++K++L+ G E +GL  +       +  +       +LN++ A  + LY   N
Sbjct: 109 DEKVSLVFGPEDRGLNNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYECAN 161


>gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
          Length = 257

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 104 RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRHHES 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + + +              +         ++  L+ G EG G+    Q+ A 
Sbjct: 164 VDKLIAWASEEDLTVVAIDNTPGCVPLET----AELPERSLLLFGQEGPGVSAAAQDAAL 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 220 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 249


>gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
 gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
          Length = 184

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +        ++  + ++     + +   R
Sbjct: 1   MTNHVVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVKVHR 60

Query: 192 ISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETA 248
             +L   L+        +     SS +   ++          + G E  GL     +E  
Sbjct: 61  HDDLNAFLKSLGPDDEMYLISKFSSKNYVDVDYTDSKKNYYFVFGKETTGLPETFMREYY 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I+  N+SN+ A+ L      
Sbjct: 121 DRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 153

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L   + P N G ILR A        I            L ++    +  +   
Sbjct: 1   MNDLRIALYQPDIPGNTGTILRLAACLGLSVDIIEPAGFDLSDRNLKRAGMDYIAAVTMT 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +         S G + +  S+ +  P  +        L+ G E  G+     E A +
Sbjct: 61  RHDSWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPDDVLLFGRESAGVPDHVHERADA 120

Query: 251 MAHLHMPGIIKALN 264
              + M    ++LN
Sbjct: 121 RILIPMAPGQRSLN 134


>gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6]
 gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C6]
          Length = 234

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               N  + ++ G E  GL+ +  E    +  +        +N+S+A +V LY   
Sbjct: 101 HLDLNGSLGIVFGREDDGLKNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYEIY 156


>gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 290

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A++ G EG+GL  +       +  +        LN+  AA V LY  +
Sbjct: 145 PTAIVFGREGRGLNNEELSQLDEVCSIPADDDYPVLNLGQAATVLLYELR 194


>gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215]
 gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 250

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   K + +A+I G E +GL       A    ++       +LN+S+A ++ LY  
Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163

Query: 277 QNHFAK 282
                K
Sbjct: 164 NKSSKK 169


>gi|62391607|ref|YP_227009.1| SPOU rRNA methylase family protein [Corynebacterium glutamicum ATCC
           13032]
 gi|41326949|emb|CAF20793.1| SPOU RRNA METHYLASE FAMILY PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 222

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ + +    R   +    +       L H   
Sbjct: 69  RRHSLHVAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLMHHED 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         +++          S   +             L+ G EG G+    +  A 
Sbjct: 129 VDSLLAWAIAERLTIVAIDNTPGSVPLET----AELPKNCLLLFGQEGPGVTEAARAGAL 184

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 185 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 214


>gi|224002194|ref|XP_002290769.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974191|gb|EED92521.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1947

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 5/199 (2%)

Query: 81   LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMV 137
             +   +      ++    + +     K      L L    +    L      +  QL++ 
Sbjct: 1737 EELLIDAEQAINIEADTEEELVNFQRKIMPLDALNLSIKSMHEQKLFNAAGKKKQQLVVC 1796

Query: 138  LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-- 195
               V+   N+  + R++  F+   ++        +    + SAS                
Sbjct: 1797 ATLVDKVPNLAGLARTSEIFAAQTLVIPNLLVKKQDDFKSISASANDWIDMEECKEEDLL 1856

Query: 196  TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +K            + S K + +    +K  L+LG E +G+  +      +   + 
Sbjct: 1857 KWLYKKKAEGFTIVGLEQTSSSKCITKTKFPEKTVLLLGKEKEGIPVQYLSAVDTCIEIP 1916

Query: 256  MPGIIKALNVSNAAAVALY 274
              GII++LNV    A+A++
Sbjct: 1917 QLGIIRSLNVHVTGALAIW 1935


>gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 177

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                        K   +  +    +       ++   ND+I L+ G E  G+  +  + 
Sbjct: 61  HDSYSDFYNKYKDKNIYYITRYGLKTYSDVDFKKEYENNDEIWLMFGKESTGIDKQVLKD 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   + M   ++++N++N  A+  +      
Sbjct: 121 NIDNCLRIPMISKMRSINLANCVAIVGFEVMRQI 154


>gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537]
          Length = 170

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +        +   + ++     EH+  ++
Sbjct: 1   MTNHIVLFEPVMPANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVK 60

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
                      K     +     ++      + +  +     + G E  GL     ++  
Sbjct: 61  HPSLPDFLDTLKPTDHLYLVSKFANQDYSQPDYQATDGDHYFLFGKETTGLPEVFMRQNP 120

Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
                +      I++LN+SN  A+ LY     
Sbjct: 121 EKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152


>gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
 gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
          Length = 248

 Score = 62.5 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + K+A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 107 HGKVAIVFGRERIGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEVR 158


>gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 235

 Score = 62.2 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +  I ++ G E  GL  +  E   S+  +        +N+++AAA+ LY  
Sbjct: 102 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 155


>gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205]
 gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205]
          Length = 281

 Score = 62.2 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +  IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 115 ANLDQNIAIVFGREDRGLTNEELALANYHLTIPVNPSYGVLNVAQAIQVVCYELR 169


>gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
 gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
          Length = 304

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            AL+ G E +GL  +    A     +       ALN++ A  +  Y    
Sbjct: 126 TALLFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSR 175


>gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +  I ++ G E  GL  +  E   S+  +        +N+++AAA+ LY  
Sbjct: 110 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 163


>gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +  I ++ G E  GL  +  E   S+  +        +N+++AAA+ LY  
Sbjct: 110 WNFSGNIGIVFGRENYGLYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEI 163


>gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 177

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
                        K   +  +    +       ++   N++I L+ G E  G+  +  + 
Sbjct: 61  HNSYSDFYNKYKDKNIHYITRYGLKTYSDVDFKKEYENNEEIWLMFGKESTGIDKQVLKD 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   + M   ++++N++N  A+  +      
Sbjct: 121 NIDNCLRIPMINKMRSINLANCVAIVGFEVMRQI 154


>gi|254368173|ref|ZP_04984193.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
 gi|134253983|gb|EBA53077.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
          Length = 63

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +A L M G + +LNVS A  +ALY T     
Sbjct: 28  DFLAKLPMLGEVSSLNVSVATGIALYETVRQRT 60


>gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
 gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
          Length = 241

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 + +K+ ++A++ G E  GL  +          +       +LN++ A  +  Y 
Sbjct: 96  CAMKAVEAVKSGQVAIVFGRERIGLTNEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYE 155

Query: 276 TQ 277
            +
Sbjct: 156 LR 157


>gi|254822868|ref|ZP_05227869.1| hypothetical protein MintA_23264 [Mycobacterium intracellulare ATCC
           13950]
          Length = 219

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  L+ G EG G+   T+  AT    +   G  +++N   AA +A++
Sbjct: 157 LPRECLLVFGQEGPGITDDTRSGATLTVSIAQFGSTRSINAGVAAGIAMH 206


>gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
 gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
          Length = 245

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               AL+ G E  GL        T  A +       +LN++ AA +  Y  
Sbjct: 107 PGSAALVFGREDHGLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYEL 157


>gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 214

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
                 LI G EG G+ P+ Q  A     +   G  +++N   AA +A++     H
Sbjct: 152 LPRNCLLIFGQEGPGITPEAQAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWITRH 207


>gi|51244088|ref|YP_063972.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
 gi|50875125|emb|CAG34965.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
          Length = 160

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
               +   + A   IP        +    +            +S   +      D    +
Sbjct: 54  YKTQSSDITSAWTKIPLYHYKTFAEFKDNLPFATKIVGVEMGESSIAIGDFSHPDMAVYL 113

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           LG E +GL  K  +   S+  L   G   +LNV+ A ++ +Y   N
Sbjct: 114 LGNEQRGLSKKITDQCHSLIQLP--GEF-SLNVAVAGSIVMYDRLN 156


>gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205]
          Length = 239

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             AL+ G E +GL       A  +  L       ++N+S+A AV L+  + 
Sbjct: 110 PAALVFGREDRGLSNAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRR 160


>gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
 gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
          Length = 172

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     +      I+ALN+SN+ A+ +Y     
Sbjct: 104 FLFGKETTGLPETFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQ 154


>gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13]
 gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 153

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R+ V  +    I        +   L ++       +    
Sbjct: 1   MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  D ++K            +  +   ++    +   ++ G E  G+       A   
Sbjct: 61  HESYEDFMKKYGDKKIYLSTTHA--EDHYDEVKYEEGAFIMFGRESAGVPEDVH-NAHHG 117

Query: 252 AHLHMPGII-KALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 118 IKVQMINTTTRSLNLSNTVAIIAYEALRQI 147


>gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium
           erythraeum IMS101]
          Length = 248

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFAK 282
           ALI G E +GL       A     +       +LN++ A A+  Y        +
Sbjct: 111 ALIFGREDRGLTNVELNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQLNQ 164


>gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
 gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
          Length = 274

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+A++ G E  GL     +    + ++       +LN++ A  V  Y    
Sbjct: 133 GKVAVVFGPEDAGLSNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFK 184


>gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 239

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                ++A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 100 CAYQGQVAIVFGRERVGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMR 154


>gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus
           2336]
          Length = 246

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + K+A++ G E  GL             +       +LN++ A  +  Y  +
Sbjct: 106 SQKVAIVFGRERVGLTNDELLKCHYHLTIPANPEYSSLNLAMAVQLISYELR 157


>gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 169

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
             +L + +  +        +   +           +     + G E  GL  +  +    
Sbjct: 61  HDDLREFVSTVPDISKLYLVSKFASRDYTDVDYTADGDHYFLFGKETTGLPEEFMRRYPE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           +   +      I+ALN+SN+AA+ +Y     
Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQ 151


>gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 267

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    + ++ L+ G E  GL             L       ++N++ A  + L+    H
Sbjct: 115 QHTAAHKRVGLLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRH 173


>gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 241

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +  +T      +       +LN++ A     Y  +
Sbjct: 109 VALVFGRERTGLTNEELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVR 157


>gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
 gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
          Length = 266

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           IAL+ G E  GL     +    +  +       +LN++ A  V  Y   +H  
Sbjct: 136 IALVFGNETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCYELFSHVN 188


>gi|118592061|ref|ZP_01549455.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
 gi|118435357|gb|EAV42004.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
          Length = 233

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A +LG E   L P+  E    +  +     I   NV+ A A+ +Y       +
Sbjct: 150 AYVLGPERGSLSPQMLERCDHVVKIPTKFCI---NVAMAGAIVMYDRHRALGR 199


>gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+]
          Length = 680

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGI--IKALNVSNAAAVAL 273
           K     L+LG+EG+GL     + A    ++  M G   + +LNV+ A A+  
Sbjct: 597 KRTPCVLLLGSEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGALLC 648



 Score = 42.9 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------------ANLPHPFPVKTVP 97
           FLYG  +V AAL +  RK+++L   +    R   +                   PV+ V 
Sbjct: 351 FLYGSSSVEAALRSGRRKLYKLYIQQGDDVRESQNADDIKAEKVIRTLAKQKSVPVEVVS 410

Query: 98  PQ---TIDKIVGKEAVHQGLALETAPLLSPTL 126
            +    +   +     H G  LE + L  P +
Sbjct: 411 GKYGMRLMSKMSSSRPHNGFVLEASALPQPPI 442


>gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii
           SP-6]
          Length = 252

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 21/51 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +++A + G+E  G+  +          +       +LN++ A  +  Y  +
Sbjct: 111 ERVAFVFGSERYGMSNEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWR 161


>gi|146319351|ref|YP_001199063.1| rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145690157|gb|ABP90663.1| rRNA methyltransferase, TrmH family [Streptococcus suis 05ZYH33]
          Length = 125

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E KGL     +E       + M    +++LNVSN A + +Y     
Sbjct: 57  FLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQ 107


>gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
 gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 2603V/R]
 gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
          Length = 182

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +       L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDGL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +             +             D    + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164


>gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500]
          Length = 637

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + + ++ G+E  G+     + +T+   +   G+I  LNVS A ++ L     
Sbjct: 502 NPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVLAECWR 553


>gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 169

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
             +L   L  +        +   +                 + G E  GL     ++   
Sbjct: 61  HDDLPAFLATIPDMKKLYIVSKFASRDYTDVDYTGTGDHYFLFGKETTGLPEAFMRKYPE 120

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
           +   +      I+ALN+SN+AA+ +Y     
Sbjct: 121 NAVRIPQNDDNIRALNLSNSAAIVIYEALRQ 151


>gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 154

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+ V   C   +            + ++          + 
Sbjct: 1   MNFNIVLYQPEIPQNTGNIARTCVLTDCKLHLIKPLGFDINEKQVKRAGLDYWS-ELNLE 59

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           I    +   + +      +  + ++    ++        ++ G E  G+           
Sbjct: 60  IHESYEDFLEKYGNERIFLATTHETGTHYDEIEFKSGDFIMFGRETCGVPEDVHNR-HKG 118

Query: 252 AHLHM-PGIIKALNVSNAAAVALYITQNHF 280
             + M     ++LN+SN  A+  Y      
Sbjct: 119 LRVPMIKSSTRSLNLSNTVAIVAYEALRQI 148


>gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
 gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
          Length = 160

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D +      + + H   P N+G + RSA       + T  +    ++          
Sbjct: 1   MKIDQLEPGYFGIGIQHGKTPENLGVLWRSAQNLGASFVFTVGKRYSKQACDTHDIVKA- 59

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +PY       D    +            +    L++         +LGAE  GL  +
Sbjct: 60  ---MPYFHYDTFEDFYNHLPKGAMIIGVELDNRAIDLQEFRHPRNCVYLLGAEDHGLTNE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             E +  +     P    +LNV+ A ++ +Y  
Sbjct: 117 AIEKSHHLIKFDTPK---SLNVAVAGSIIMYDR 146


>gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 251

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              E   +  KIAL+ G E  GLR +  E      ++         N+S+A A+ LY+  
Sbjct: 104 FWEEMSDQGGKIALVFGREDDGLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF 163

Query: 278 NHFA 281
             F 
Sbjct: 164 TRFN 167


>gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
 gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
          Length = 182

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      I      P +   + ++     + +      +L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATXAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +             +             D    + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164


>gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 241

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   +    +   AL+ G E +GL       A  +  L       +LN+S+A A+ L+  
Sbjct: 97  RWLWQGSRGDAGAALVFGREDRGLSNAELLQAGRLVRLATSEAYASLNLSHAVAICLHEL 156

Query: 277 Q 277
           Q
Sbjct: 157 Q 157


>gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449]
 gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC
           51449]
          Length = 156

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I R  VA      +       +    L ++     +H+     +
Sbjct: 4   FQIVLVQPQIPQNTGNIGRLCVATDSVLHLIHPLGFSTTQKELKRAGLDYWQHLQVYEWA 63

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
           +L       +    +    S+ +++       +    L  G E  GL      T      
Sbjct: 64  DLNTFW-HSYPPSKRHFFFSTKAQQLYYDADFSQGGFLYFGREDAGLNEDILHTYQKQVY 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M   ++++N++ +   ALY     
Sbjct: 123 KLPMKAGVRSINLATSVGAALYEGVRQ 149


>gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score = 61.8 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 89  RRHSLHIAIENFENDGNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRHHES 148

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + + +              +         ++  L+ G EG G+    Q+ A 
Sbjct: 149 VDKLIAWASEEDLTVVAIDNTPGCVPLET----AELPERALLLFGQEGPGVSAAAQDAAL 204

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 205 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 234


>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 536

 Score = 61.8 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-----------IIKALNVSNAAAVAL 273
              L+LG EG GL P+ +  A     +                + +LNVS AAA+ +
Sbjct: 443 PTVLMLGNEGTGLLPRIKAQADGYVSIPGARIRPDLGINDAARVDSLNVSVAAALLM 499



 Score = 38.7 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVK--TVPPQ 99
           + F+YG+  V AA+    RK++ L   +     L  +        L     VK       
Sbjct: 189 SEFIYGLSAVDAAIRCTRRKLYMLYIYQAVGEELSPEKIALRKLALARGIQVKMAFAGWD 248

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPT 125
            +   +     H G+ LE +P+    
Sbjct: 249 KLLDKMSAGRPHNGVILEASPMPQIP 274


>gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 184

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E+         + G
Sbjct: 61  KMKRAGLDYWDKLNITYYESLGDFMEQMDGRLYLIS-KFAEKVYSEEKFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSNA  + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQN 168


>gi|146321556|ref|YP_001201267.1| rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|145692362|gb|ABP92867.1| rRNA methyltransferase, TrmH family [Streptococcus suis 98HAH33]
          Length = 125

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E KGL     +E       + M    +++LNVSN A + +Y     
Sbjct: 57  FLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQ 107


>gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
 gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
          Length = 167

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          N+    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 168

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D ++KM    +      ++     E   K  K   + G E KGL  +  ++       +
Sbjct: 66  EDFMEKMDGQLYLVS-KFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKALRI 124

Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281
            M    +++LNVSN   + +Y       
Sbjct: 125 PMNDQHVRSLNVSNTVCMIVYEALRQQN 152


>gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316]
 gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 182

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +             +             D    + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGKVHLISKFADKVYSDENYNDDQDH-YFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LNVSN   + +Y     
Sbjct: 139 PMNDEHVRSLNVSNTVCMIVYEALRQ 164


>gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 168

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D ++KM    +      ++     E   K  K   + G E KGL  +  ++       +
Sbjct: 66  EDFMEKMDGQLYLVS-KFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKALRI 124

Query: 255 HMPGI-IKALNVSNAAAVALYITQNHFA 281
            M    +++LNVSN   + +Y       
Sbjct: 125 PMNDQHVRSLNVSNTVCMIVYEALRQQN 152


>gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
 gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
          Length = 151

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278
                 D I L+ G E  GL  +  +    ++  + +    I+++N++NA +V +Y    
Sbjct: 88  WDIPFEDDIMLLFGKESSGLPAEILKKHPDNLYKIPLHSDHIRSINIANAVSVTVYEGLR 147

Query: 279 HFA 281
             +
Sbjct: 148 QLS 150


>gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 167

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|298710915|emb|CBJ49268.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 1681

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E  GL             +   G++++LN   + A+ L      
Sbjct: 1628 LVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 1676


>gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6]
 gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6]
          Length = 167

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          N+    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase llmg_1343
 gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 169

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I R+  A +    +            L ++     + +  +  
Sbjct: 1   MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETAT 249
            NL D +  +   G   +          + +  +DK     + G E  GL  +   E   
Sbjct: 61  KNLQDFMNSIADGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRD 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
               + M    +++LN+SN A + +Y     
Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151


>gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
          Length = 249

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 105/254 (41%), Gaps = 17/254 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLAP-YRDIREKDLVGRQQR-------FIAEG-KVVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L  ++   +   LL  +N L  L      LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 118 TAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P L  +        L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQET 247
           G EG+GL  +  E 
Sbjct: 231 GTEGEGLPSRLLER 244


>gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08]
          Length = 239

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +  + +++  K   E   + +K++++ G E  GL  +          +       +LN
Sbjct: 88  MPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNEDLGKCDFHLQIPTSED-SSLN 146

Query: 265 VSNAAAVALYITQN 278
           +S+A  +  +    
Sbjct: 147 LSHAVQIVAHEIYK 160


>gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
 gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
          Length = 167

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|114568580|ref|YP_755260.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339042|gb|ABI64322.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 178

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++     +  + ++ P N+GAILR+A AF      T            A +A  A     
Sbjct: 4   MKRGYFGVGAEGISKPMNMGAILRTAHAFGASFAFTLNASHQVRDVYRADTAKSA---DH 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                    +   + S         ++    L         A + G E   L  + Q+  
Sbjct: 61  VPYYEWPDLSAMALPSNCQLVGIELAEDAVDLPSFRHPLCAAYVFGRERGSLSQEVQDRC 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + +  +     +   NVS A A+ LY       
Sbjct: 121 SHIVKIPTKFCV---NVSVACAITLYD--RQIN 148


>gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
 gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
          Length = 237

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L+ G E  GL  +       +  +        LN+  AA + LY  +
Sbjct: 110 VCLVFGREDVGLSNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELR 158


>gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 167

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      +++         ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAENVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 170

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   Q  +VL     P N G I R+  A +    I      P +   + ++     + + 
Sbjct: 1   MTTFQNHIVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247
                NL + + KM    +     +                  + G E KGL     +  
Sbjct: 61  ITYYDNLEEFMSKMDGQLYLISKFAEKVYVEENFATA-GNHYFMFGREDKGLPEDFMRAH 119

Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           +     + M    +++LN+SN   + +Y       
Sbjct: 120 SEKALRIPMNDEHVRSLNLSNTVCMLVYEALRQQN 154


>gi|19553964|ref|NP_601966.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21325544|dbj|BAC00166.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 206

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ + +    R   +    +       L H   
Sbjct: 53  RRHSLHVAIENFENDANIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLMHHED 112

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         +++          S   +             L+ G EG G+    +  A 
Sbjct: 113 VDSLLAWAIAERLTIVAIDNTPGSVPLET----AELPKNCLLLFGQEGPGVTEAARAGAL 168

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 169 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 198


>gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 241

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A + G E +GL     E  + +  + +     +LN+++A  +ALY  +
Sbjct: 109 TAPVAFVFGREDRGLDNAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIR 160


>gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
 gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
          Length = 169

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
             +L   L  +        +   ++                + G E  GL     ++   
Sbjct: 61  HDDLPAFLATIPDMEKLYIVSKFANHDYTDVDYTGAGDHYFLFGKETTGLPEAFMRKYPE 120

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
           +   +      I+ALN+SN+AA+ +Y     
Sbjct: 121 NAIRIPQNDDNIRALNLSNSAAIVIYEALRQ 151


>gi|312141301|ref|YP_004008637.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311890640|emb|CBH49959.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 233

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+  +    A+    +   G  +++N   AA +A++     
Sbjct: 171 LPRDCLLLFGQEGPGVTEQGHAVASMTVSIAQFGSTRSINAGVAAGIAMHTWIRQ 225


>gi|325673864|ref|ZP_08153554.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325555129|gb|EGD24801.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 233

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+  +    A+    +   G  +++N   AA +A++     
Sbjct: 171 LPRDCLLLFGQEGPGVTEQGHAVASMTVSIAQFGSTRSINAGVAAGIAMHTWIRQ 225


>gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 269

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + AL+ G E  GL  +  ++   +  +       +LN++ A  V  Y   + 
Sbjct: 129 HTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAVQVVAYELYSQ 187


>gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum
 gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 172

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 1/129 (0%)

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
              +      I+  KR+            +    +        +           F T  
Sbjct: 28  NLHLVRPYGFILDKKRFHKDFIRASTNHLNALKLYEYDDFNEFINKNNISGDEIYFFTRY 87

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +        Q I    + L+ G E  G+     ++   +   +     +++LN++N+ A
Sbjct: 88  GTKTPCDYQYQNIIQHNVYLVFGKESTGIDHNILKKYPHNWIRIPTSINLRSLNIANSVA 147

Query: 271 VALYITQNH 279
           + +Y     
Sbjct: 148 MGIYEVVRQ 156


>gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 170

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 69/169 (40%), Gaps = 3/169 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                     +   + Q++++ +++  P N+G I+R + AF  + I     ++   +   
Sbjct: 1   MIQKEHEHIENTKHDLQIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKA 60

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALIL 233
            +++    + + Y  + ++     ++   G+                 +     K+ LI+
Sbjct: 61  KRASRNTYKTMDYEFVVDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVLII 120

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+E +G+  +  +   +  H+ M G   ++NV NA ++ L+    +  K
Sbjct: 121 GSERQGISEELLQFCQNHYHIPMFGGNSSINVVNALSIGLFKITENPNK 169


>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
          Length = 267

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL          + H+       +LN+++A  V  Y  +
Sbjct: 132 VALVFGTEMSGLTTLEVSKCQIIIHIPANPEYSSLNLASAVQVMAYELR 180


>gi|145296765|ref|YP_001139586.1| hypothetical protein cgR_2669 [Corynebacterium glutamicum R]
 gi|140846685|dbj|BAF55684.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 206

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G EG G+    +  A     +   G  +++N   AA +A++     
Sbjct: 144 LPKNCLLLFGQEGPGVTEAARAGALMTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 198


>gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 249

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+A++ G E  GL  +    A  +  L +     +LN++ A AV  Y 
Sbjct: 111 EKVAVMFGGEKSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYE 159


>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 200

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 7/192 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               +  +  + +   +     L                +   ++VLD + DP NIG IL
Sbjct: 15  KKYIITEKDFEALSQTQNPQGVL---ILAEKLKLEQLSFDDDFILVLDRIQDPGNIGTIL 71

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A+A     +I         +     +  GA   + +  I+NL +          +   
Sbjct: 72  RTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIAKLQQRKIWL 131

Query: 212 LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +         +        L+ G E  G+      +      +     I++LNV+ AA 
Sbjct: 132 TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESLNVAQAAT 188

Query: 271 VALYITQNHFAK 282
           + L+       +
Sbjct: 189 IYLFEGLRQRLR 200


>gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 223

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R     + +++  +  NIG ++R+A AF  + +    R   +    +       + H  
Sbjct: 69  QRRHPFHVAIENFENDMNIGTVVRTANAFMAEAVHIVGRKRWNRRGAMVTDRYQHIIHHE 128

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +         + +          S   +             L+ G EG G+  + Q+ A
Sbjct: 129 TVDDLLEWATARGVAVVAIDNTPGSVPLET----AELPRDCVLLFGQEGPGVTAEAQQAA 184

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   G  +++N   AA +A++     
Sbjct: 185 VMTCSIAQFGSTRSINAGVAAGIAMHTWIRQ 215


>gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 278

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 118 QQNIAIVFGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELR 169


>gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 205

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             KIA++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 103 KGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELR 154


>gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 167

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYI 275
            +A++ G E +GL  +     T +  +       +LN+S+A AV    LY 
Sbjct: 115 NLAIVFGREDRGLTNEELMYCTHVCSIPSIQSAGSLNLSHAVAVVLSRLYE 165


>gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
 gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
          Length = 256

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              IA++ G E +GL          +  LH      +LN+S++  + L+    
Sbjct: 111 PGPIAVVFGREDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLAR 163


>gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 261

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            ++ L+ G E  GL  +      ++  + +    ++LN++ A A+  Y  +
Sbjct: 113 QRVGLLFGGERAGLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWR 163


>gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
 gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
          Length = 243

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +A++ G E +GL          +  L       +LN+S+A AV L+    
Sbjct: 107 PMAMVFGREDRGLSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELAR 157


>gi|309808741|ref|ZP_07702627.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308167977|gb|EFO70109.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 94

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     + G E  GL     +E       + M   I+A N++N+ A+ L+     
Sbjct: 17  YTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQ 75


>gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 177

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +             K   +  +    +       ++  KN ++ ++ G E  G+  +
Sbjct: 57  QHEVHASYKDFYEKYKNKNIFYLTRYGLKTYTDVDFKKEYKKNKEVWIMFGKESTGIDKE 116

Query: 244 TQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    +   + M   ++++N++N  A+  +      
Sbjct: 117 ILQTHLENCLRIPMMSEMRSINLANTVAIVGFEIMRQL 154


>gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 278

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 118 QQNIAIVFGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELR 169


>gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 169

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I R+  A +    +            L ++     + +  +  
Sbjct: 1   MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETAT 249
            NL D +  ++  G   +          + +  +       + G E  GL  +   E   
Sbjct: 61  KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
               + M    +++LN+SN A + +Y     
Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151


>gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
 gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +N+++AL+ G E +GL         ++ ++   G   +LN++ A  +  Y  
Sbjct: 79  CENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLNLAQAVVIVCYEL 130


>gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 167

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
          Length = 253

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +   IA++ G E +GL          +  LH      +LN+S++  + L+    
Sbjct: 106 HQPGPIAVVFGREDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMAR 160


>gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
 gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
          Length = 170

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   Q  +VL     P N G I R+  A +    I      P +   + ++     + + 
Sbjct: 1   MTTFQNHIVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQET 247
                NL + + KM    +     +                  + G E KGL     +  
Sbjct: 61  ITYYDNLEEFMSKMDGQLYLISKFAEKVYAEENFATA-GNHYFMFGREDKGLPEDFMRAH 119

Query: 248 ATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           +     + M    +++LN+SN   + +Y     
Sbjct: 120 SEKALRIPMNDEHVRSLNLSNTVCMMVYEALRQ 152


>gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon]
          Length = 234

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ G E  GL     +    +  +        +N+S+A AV LY  
Sbjct: 111 ILFGREDVGLLNDELKLCDLVVSIPTSPEYPVMNLSHAVAVILYEL 156


>gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           DSM 20016]
 gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 169

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 3/153 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249
             +L   ++ +       I     +    + +   +     + G E  GL  +   +   
Sbjct: 61  HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           +   +      I+ALN+SN+AA+ +Y       
Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQQN 153


>gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 167

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A]
 gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           NATL2A]
          Length = 245

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           IAL+ G E +GL  +    A  +  L+      +LN+S+A A+ L+   N   
Sbjct: 112 IALVFGREDRGLSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQF-NQLN 163


>gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
 gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
          Length = 167

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +     +             D    + G E KGL     +E    
Sbjct: 61  YDSLEDFMSQMKGKLYLISKFAEKVYSEANLASSEDH-YFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 166

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQE-TATSMAHLHMP-GIIKALNVSNAAAVALYITQNHF 280
                 LI G E KGL  +     A    HL M    I++LN+SNAA   +Y     F
Sbjct: 107 YPSDAYLIFGKETKGLPSEVLNGRAHRTFHLPMRSPHIRSLNLSNAATAVIYQAMRSF 164


>gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
 gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
          Length = 169

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249
             +L   ++ +       I     +    + +   +     + G E  GL  +   +   
Sbjct: 61  HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           +   +      I+ALN+SN+AA+ +Y     
Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEALRQ 151


>gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
 gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
          Length = 314

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA + G E  GL     E   ++ H+    +  +LN++ A  +  Y  +
Sbjct: 159 IAFVFGNERYGLPNDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMR 207


>gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 169

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I R+  A +    +            L ++     + +  +  
Sbjct: 1   MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETAT 249
            NL D +  +   G   +          + +  +       + G E  GL  +   E   
Sbjct: 61  KNLQDFMDSIADGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRD 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
               + M    +++LN+SN A + +Y     
Sbjct: 121 ECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151


>gi|254501987|ref|ZP_05114138.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438058|gb|EEE44737.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 209

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A +LG E   L P+  E    +  +     I   NV+ A A+ +Y    
Sbjct: 126 AYVLGPERGSLSPQMLERCDHVVKIPTKFCI---NVAMAGAIVMYDRHR 171


>gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
 gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
          Length = 168

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++   + ++     + +  + 
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250
             +L   L  +       +   ++                + G E  GL     +     
Sbjct: 61  HDDLVAFLDSIDLDHLYIVSKFAERDYSEVDYTIAGDHYFLFGKETTGLPEGFMRRYPEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              +      I+ALN+SN AA+ +Y     
Sbjct: 121 AIRIPQDDNNIRALNLSNTAAIVIYEALRQ 150


>gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 289

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +AL+ G E  GL  +      S+  L +     +LN++ A AV  Y    
Sbjct: 121 EDVALVFGRERTGLYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSK 172


>gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301]
 gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 250

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   K + +A+I G E +GL       A    ++       +LN+S+A ++ LY  
Sbjct: 104 FDWTLSFKKINNLAIIFGREDRGLTNNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYEL 163

Query: 277 QNHFAK 282
                K
Sbjct: 164 NKSSKK 169


>gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
 gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
          Length = 168

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +       ++   + ++     + +  + 
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250
             +L   L  +           ++                + G E  GL     +     
Sbjct: 61  HDDLVAFLDSIDLDHLYIASKFAERDYSEVDYTIAGDHYFLFGKETTGLPEGFMRRYPEK 120

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              +      I+ALN+SN AA+ +Y     
Sbjct: 121 AIRIPQDDNNIRALNLSNTAAIVIYEALRQ 150


>gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 243

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++AL+ G E +G+  +     T +  +    +  ++N++ ++AV LY+    
Sbjct: 108 RGRVALVFGGEQRGMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQ 161


>gi|219125928|ref|XP_002183221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405496|gb|EEC45439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 119

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            E +  +    L+LG E +G+  +  +       +   GII++LNV  + A
Sbjct: 69  CEFQYPDAPTVLLLGKEKEGIPVEYLQLVDQCVEIPQLGIIRSLNVHVSGA 119


>gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 154

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +      + + +   P N+G + RSA       I T       ++         A+  
Sbjct: 4   DNLEQGFFGIGIQNGKTPENLGVLWRSAQNMGASFIYTIGNRYSKQACDTH----KAVGA 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY       D    +           ++S + LE      +   +LGAE  GL  +  +
Sbjct: 60  MPYFHYETFEDFYAHLPKGAMLVGVELNESAEHLEDFKHPRRCVYLLGAEDHGLSNQAID 119

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            A  +          +LNVS A ++ +Y  
Sbjct: 120 KAHYLVK---FKSTLSLNVSVAGSIVMYDR 146


>gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 7/178 (3%)

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +                    T  +      L+ LD + D  N+G+++R A AF    ++
Sbjct: 202 LACGFVPENRNFAWLMEYFRKTRMSGEGELRLLALDGICDTANLGSVVRCASAFGVHAVL 261

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK----- 218
            +K           + + G +  IP +R+ NL  AL  +    F     ++         
Sbjct: 262 LSKDCCDPWYRRAVRVSMGHIFRIPCVRVDNLVQALTALSQEPFAVTSYAAVIDPRADLL 321

Query: 219 --PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + Q         I+G+EGKG+     + AT+   + M   + +L+V  A  + L+
Sbjct: 322 LENIAQGAIPKSWCCIVGSEGKGISCDVIQAATTTLRIGMYDHVDSLSVPVATGILLH 379


>gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 266

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A + G+E  G+             +       +LN+  A  V  Y  +
Sbjct: 119 PTGVAFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWR 170


>gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
 gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
          Length = 232

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + K+A++ G E  G           + H+        +N+S++AAV  Y   N
Sbjct: 108 DGKVAILFGREDNGFTNDELRLCDMIVHIPANEEYPIMNISHSAAVIFYELSN 160


>gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM
           2160]
          Length = 264

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  + ++ G E  GL          +  +   G    LN++ AA + LY  +
Sbjct: 107 LDADVCIVFGRERVGLTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELR 159


>gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
 gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
          Length = 244

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +      ++       +LN++ A  +  Y  +
Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina
           MBIC11017]
          Length = 250

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             I   + ALI G E +GL  +    A +   +       ALN++ A  +  Y  + 
Sbjct: 103 PWILEGEAALIFGPEDRGLSNEELYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQ 159


>gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus
           capsulatus str. Bath]
          Length = 247

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + A++ G E  GL     E    + H+       +LN++ A  V  Y   
Sbjct: 108 RSAIVFGREHSGLTNGELEQCHFLLHIASNPEFSSLNLACAVQVVAYELY 157


>gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           maricopensis DSM 21211]
          Length = 261

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E  GL     +   +   +   G   +LN++ A  +  Y    
Sbjct: 106 ALVFGPEETGLSSDDLQLCQATVRIPT-GEYASLNLAQAVLLVCYEFLQ 153


>gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A]
 gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           NATL1A]
          Length = 245

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           IAL+ G E +GL  +    A  +  L+      +LN+S+A A+ L+   N   
Sbjct: 112 IALVFGREDRGLSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLHQF-NQLN 163


>gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 291

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              E   +  KIAL+ G E  GLR +  E      ++         N+S+A A+ LY+  
Sbjct: 144 FWEEMSDQGGKIALVFGREDDGLRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILYVMF 203

Query: 278 NHFA 281
             F 
Sbjct: 204 TRFN 207


>gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49]
          Length = 184

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLDDFMEQMDGHLYLIS-KFAEKVYSEENFAAKGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 184

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +     +             D    + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLDDFMEQMDGRLYLISKFAEKVYSEENYA-AEDSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN+  + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQN 168


>gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 167

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D ++++    +      ++     E          + G E KGL  +  +     
Sbjct: 61  YESLDDFMEQIDGHLYLIS-KFAEKVYSEENFAAKGSHYFMFGREDKGLPEEFMRRHPEK 119

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151


>gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 167

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + ++    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFMSQIKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae
           TIGR4]
 gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195]
 gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031]
 gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585]
 gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974]
 gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2]
 gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200]
 gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4]
 gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195]
 gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585]
 gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031]
 gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae
           AP200]
 gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA04375]
 gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17545]
 gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 167

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni]
 gi|238656876|emb|CAZ27959.1| rna methyltransferase-related [Schistosoma mansoni]
          Length = 407

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 4/182 (2%)

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            I  ++ +  G++      +   L     S+   + D  +    +       +       
Sbjct: 223 NIWNEKVIRAGMSGHFRIPVYQGLSWTDISRYFGICDSSSSHVIVFVADPEPLLTDKLIE 282

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
              K+   +  +        ++E      ++  +                 +        
Sbjct: 283 SAWKKDQTNHQSQYINKCKISVECEAVDFLTPESTDSAYRLPVQTIPHFSVNYIPSDYNS 342

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  N ++A+++G+E  G+ P+              +     I +LNV +AA+V L   Q 
Sbjct: 343 EEHNCRLAVVIGSEAHGVSPEAFHLVHLTGGSRLVIPSADRISSLNVLSAASVLLGEIQR 402

Query: 279 HF 280
            F
Sbjct: 403 QF 404


>gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 351

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 13/274 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           +L+++ Y  + +  R  K +    +K     +  + F+   +T+     N + +   +L 
Sbjct: 79  NLQNNEYLYISKKSRMMKYIIRLRKKKNFRKKNNSFFVKDSNTILHLSKNKNIQFEAVLG 138

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVR 130
           T   +     +        +  +    ++ I                    +    + + 
Sbjct: 139 TNKDILNNFKN---KQCTKLYYINKDILNYIFSDTLNVRRQDKNDAVAIIKIPCLSNKIN 195

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N + L+VLD +   +N+G IL  A +F+ D +  TK  +   +  + +   G   +IP+I
Sbjct: 196 NIKFLLVLDRIRYAYNLGKILNVAYSFNIDCLYYTKHTADPYNPKVMEITKGTHLNIPHI 255

Query: 191 RISN------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +         +          +   + +  KK   +    + I LILG+E  G     
Sbjct: 256 FGNYQELEQLCKEHKLIPIVAHTKGQNIDTFFKKNKIKNNNINGICLILGSESTGPHTDV 315

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A     L M  +  +LNV  AA++ ++  + 
Sbjct: 316 FKYA-HPIQLPMHEMTNSLNVFVAASILIHYIKK 348


>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 148

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYIT 276
           +AL+LG+EG+GL    +    S   + M PG +++LNV  A ++ ++  
Sbjct: 100 VALVLGSEGQGLSGAVRALC-SPVAVPMTPGAMESLNVGVAGSLLMFAL 147


>gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 177

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
                        K   +  +    +       ++   N++I L+ G E  G+  +    
Sbjct: 61  HDSYSDFYNKYKDKNIYYITRYGLKTYTDVNFKKEYEDNEEIWLMFGKESTGIDKQVLHN 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   + M   ++++N++N  A+  +      
Sbjct: 121 NIDNCLRIPMISKMRSINLANCVAIVGFEVMRQI 154


>gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 242

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 107 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELR 158


>gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 247

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ G E  GL        + +  +       +LN+S A  +  +
Sbjct: 116 IVFGRESDGLTDDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTF 159


>gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.]
          Length = 256

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N+KIA++ G+E +GL  +       + ++       +LNVS A  +  Y  
Sbjct: 111 NNKIAILFGSEDRGLVNEDIRLCHELINIP-SSDFSSLNVSQAVLLVCYEL 160


>gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 508

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++AL+LG E  G+RP           + M G  ++LNVS  AA+ L    N  
Sbjct: 148 PRLALVLGNERDGIRPDLAAACARAVRVPMRGFAESLNVSVTAAILLEHATNGR 201


>gi|307942542|ref|ZP_07657890.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
 gi|307774181|gb|EFO33394.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A +LG E   L P+  +    +  +     I   NV+ A A+ +Y       +
Sbjct: 98  AYVLGPERGSLSPQMLDRCDHVIKIPTKFCI---NVAMAGAIVMYDRHRALGR 147


>gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
 gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
          Length = 244

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280
            +AL+ G E  GL        +    +        LN+S A  V  Y         
Sbjct: 109 PVALVFGRERFGLTNDEIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRL 164


>gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
 gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
          Length = 228

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H     + +             + I  ++ ++    +        L+ G E   +    
Sbjct: 123 YHDMTHVVIHPNFTNLVESMPDSRIISFTAQARTLYTEVDYQPNDILLFGPEPGNIPDPM 182

Query: 245 ----QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +         M   +++LN++N AA+ALY     
Sbjct: 183 DIMSGDHIYKQVRFPMRPSLRSLNLANCAAIALYEAWRQ 221


>gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 231

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +D++A + G E  GL             +       +LN++ A  +  Y     
Sbjct: 99  DDRVAFVFGPERTGLANDDVYRCHVCLSIPTHPDYGSLNLAQAVQILAYD-WRQ 151


>gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA]
 gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA]
          Length = 167

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDFISQMKGKLYLIS-KFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|282851419|ref|ZP_06260784.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           gasseri 224-1]
 gi|282557387|gb|EFB62984.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           gasseri 224-1]
          Length = 141

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               N     + G E  GL     +E       + M   I+  N+SN+ A+ L      
Sbjct: 49  YTDPNKDYYFVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQ 107


>gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
 gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
          Length = 255

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G E  GL  +       +  +        LN+  AA + LY  +
Sbjct: 123 PTALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELR 172


>gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
 gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
          Length = 275

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K AL+ G EG GL  +       +  +        LN+  AA + +Y  + 
Sbjct: 137 KTALVFGREGTGLDNEELAMLDEVCCIPADDRYPVLNLGQAATLLMYELRR 187


>gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus
           oleovorans Hxd3]
          Length = 260

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + + +A++ G E +GL  +  +   ++ H+       +LN++ A  V  Y  
Sbjct: 114 CRENPVAVMFGPEDRGLENEDLQYCHNLVHIPTS-EFSSLNLAQAVLVICYEL 165


>gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 242

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 31/116 (26%)

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S         S+                   +K           +  + +    E K 
Sbjct: 54  HASYIFDNAEYFSSITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTANRISGTEKKG 113

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            K+A++ G E  GL             +       +LN+S+A  +  Y    +  K
Sbjct: 114 GKVAVVFGNERTGLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRYNEK 169


>gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 271

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 113 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 161


>gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1]
 gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1]
          Length = 279

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169


>gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024]
 gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024]
          Length = 279

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169


>gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 279

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELR 169


>gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus]
          Length = 220

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 223 EIKNDKIALILGAEGKGLR---PKTQETATSMAHLHMPGII-KALNVSNAAAVALYITQN 278
                 +AL+ G E  GL       +  A    +L M   + ++ N+SNA A+A+Y  + 
Sbjct: 136 ACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSYNLSNAVAMAVYEVER 195

Query: 279 HFAK 282
              +
Sbjct: 196 QRRE 199


>gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
 gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
          Length = 242

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 107 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELR 158


>gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 257

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++ G E  GL        + +  +       +LN++ A  +  Y
Sbjct: 115 GPVSIVFGREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAY 162


>gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
 gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
          Length = 1229

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   +   K  +++G E +G+             +   G  ++LNV   AA+ +
Sbjct: 1163 MMHNFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1217


>gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 181

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +    +   +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 10  EEPNKAMNHIVLFQPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRKMKRAGLDYWDK 69

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
           +      +L + ++K           ++                 + G E KGL  +  +
Sbjct: 70  LDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGREDKGLPEEFMR 128

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                   + M    +++LN+SN   + +Y     
Sbjct: 129 ANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|163793894|ref|ZP_02187868.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181005|gb|EDP65522.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 191

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 3/103 (2%)

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
                   +                              +D   PL       + A ++G
Sbjct: 43  HEWGRVDTSDATGSLPYYPFDDPDAVMFPKGCELVGVEITDEAVPLPSFHHPRRAAYVMG 102

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E   L P+       +  +       ++N++ A A+ +Y   
Sbjct: 103 RERGALSPELLSRCDHVVRIPSRF---SINLAIAGAMVMYDRM 142


>gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 167

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             NL D L +M    +     +             +    + G E KGL     +E    
Sbjct: 61  YDNLADFLSQMKGQVYLISKFAEKVYSEANLAS-GEDQYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LNVSN   + +Y     
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 149


>gi|54025941|ref|YP_120183.1| hypothetical protein nfa39710 [Nocardia farcinica IFM 10152]
 gi|54017449|dbj|BAD58819.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 155

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 5/142 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + + H     N+G + RSA+ +    + T            A     A   IP     ++
Sbjct: 8   VAVWHPKHEVNVGTLWRSAMTYQASMLATIGSRYK----PQASDTCRAHNAIPLHHYRDI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D +  +                 L +     +   +LGAE  GL     +    +  + 
Sbjct: 64  DDLIAHLPYGCPLVGVELDARAVSLNEFTHPVRALYLLGAEDHGLPAAVLDRCHHVVQIP 123

Query: 256 MPGIIKALNVSNAAAVALYITQ 277
                 +LNVS A ++ ++   
Sbjct: 124 -SPSPWSLNVSVAGSLVMHDRW 144


>gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 161

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                  L +++ V DP N G ILR+  A  CDG+I   R   S + V+ K+++GA E++
Sbjct: 5   CKSEQVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIPPRNWTSAAGVVTKASAGASEYL 64

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I  +++   LQ+M       +     +   L       ++ L +G E +GL    Q  
Sbjct: 65  NLIIANDMDALLQEMKQKDITLVCGQRSNAISLYAYTFPQRVCLAIGGEMRGLSKSVQGH 124

Query: 248 ATSMAHLHMPGIIKALN---VSNAAAVALYITQNH 279
           +    ++      +  N    + + A+  +     
Sbjct: 125 SDQNLYIPYRQDFR--NAMTAAASTAIFAFELVRQ 157


>gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 252

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            G E  GL  +  +   +  H+       +LN++ A  V  Y  +
Sbjct: 116 FGRERTGLTNEELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160


>gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB]
 gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           vannielii SB]
          Length = 234

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ G E  GL+ +  E    +  +        +N+S+A +V LY   
Sbjct: 110 IVFGREDDGLKNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIY 156


>gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
 gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
          Length = 249

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    K  K+  + G E  GL  +    A  +  + +     +LN+S    +  Y 
Sbjct: 104 MMYARALTQKGKKVGFMFGPESSGLSNEDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYE 163

Query: 276 TQNH 279
            Q  
Sbjct: 164 WQRQ 167


>gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 245

 Score = 60.6 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + +AL+ G E  GL  +  E    +  + M     +LN+  A  V  Y      +K
Sbjct: 114 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCY----QLSK 168


>gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 167

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YDSLEDFMSQMKGKLYLIS-KFAEKVYSEADLSTDEAHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNH 279
              + M    +++LNVSN   + +Y     
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 149


>gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 502

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
            + L++G+EG+G+R   +  +  M  +        ++ +LNV  A  V L
Sbjct: 449 PLLLVIGSEGRGVRTNLKNKSDFMVSIPKLRVNDDVVDSLNVGVATGVVL 498



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG H V A L    R I  L   K+    +   A   +    +TV  +    I+ K 
Sbjct: 167 EYVYGTHPVRAVLQARKRPILGLYNFKSDDRGIIKYAEKEYGVKCQTVRDKNALNILTKN 226

Query: 109 AVHQG 113
            VH G
Sbjct: 227 GVHNG 231


>gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
 gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
          Length = 350

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 17/243 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPP 98
            ++ ++     +YG +   +        I ++  T     ++    + L     V  V  
Sbjct: 107 KKNRAEEMK--VYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVD 164

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +   +V     H G+ +        TL    D  +    L+VL+ V +PHNIG I+R+ 
Sbjct: 165 NSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPQQKNCLLVLNGVRNPHNIGGIIRTC 224

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           V +    ++         +  +  +  G     P       T  ++   +        S+
Sbjct: 225 VCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSN 284

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270
              K ++Q   +DK+A +L +E         + A  + +L     +      LNVS A  
Sbjct: 285 KHAKTIKQLQLDDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATG 338

Query: 271 VAL 273
           + L
Sbjct: 339 ILL 341


>gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 220

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215


>gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 199

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 94  YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 153

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 154 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 194


>gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
 gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
          Length = 220

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215


>gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 223

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 118 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 177

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 178 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 218


>gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 169

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 64  YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 123

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 124 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164


>gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705]
          Length = 169

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 64  YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 123

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 124 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164


>gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium
           longum DJO10A]
 gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A]
 gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum
           DJO10A]
 gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum
           subsp. longum F8]
 gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 220

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 115 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 174

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E         L M   +++LN++N A++A+Y       
Sbjct: 175 DIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 215


>gi|198437016|ref|XP_002120809.1| PREDICTED: similar to RNA methyltransferase like 1 [Ciona
           intestinalis]
          Length = 413

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 99/347 (28%), Gaps = 67/347 (19%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
             ++  + E    L+   + K+    R  ++KM +  + S +        L G + +  A
Sbjct: 63  EKLANFREELPPPLEKLKFRKISNETRNLFRKMINNVKSSSYRENHNVCLLRGKNLIREA 122

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHP---FPV---KTVPPQTIDKIVGKEAVHQGL 114
           +           +    L +L  D          P+   + +  +  D +          
Sbjct: 123 MIAGGFIRTIYFSELKLLEKLPIDIVQKTNLVHVPIAAMREMSDERTDGLFALATQQDAK 182

Query: 115 ALETAPLLSPTLDAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
             +            + S +L   ++ + + DP  +G IL+ A    C+ +         
Sbjct: 183 TRQKIRTQRIESVKQKESTILPVTLICEGIKDPKIMGDILKVASCVGCEEVYVMDGCVSI 242

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------------- 217
            +  + K   GA   +P +      +  + + +     + LS + +              
Sbjct: 243 WNTSVLKRGGGAHFKLPILPNQQWENVEKLVSNSKPDAVFLSHNCEEGLTIIDFKQDPVV 302

Query: 218 ------------------------------------KPLEQEIKNDKIALILGAEGKGLR 241
                                                  +      +  L++G+   G  
Sbjct: 303 VAINKGSSVLDTLKRESTVKLDNKEDRIKNAHIPSINFDQANWPTKQSVLVVGSISFGAY 362

Query: 242 ------PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  +T E    + +L +    ++L+ S  A+V L+       K
Sbjct: 363 SFAVNLQETVEQC-HVINLPLSRKTESLSPSIEASVLLFDALRQIGK 408


>gi|298206902|ref|YP_003715081.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
 gi|83849536|gb|EAP87404.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
          Length = 153

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 7/156 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              +        + + +   P N+G + R+A       I T  +    +++    S    
Sbjct: 1   MQPNNFTTDFFGIGILNGKTPENLGVLWRTAQNLGASFIFTIGKRYAHQASDTHNSVKSM 60

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +             + +   G +    +   +          +   +LGAE  GL  +
Sbjct: 61  PYYHYKDFNDFFDHLPKGVRIVGVEKTETAIQLEDFEH----PRRCVYLLGAEDHGLTRE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +  +          +LNV+ A ++ LY    +
Sbjct: 117 AIDRSHFLI---QFKSEFSLNVAVAGSIVLYDRSRN 149


>gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
          Length = 167

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MTNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D + +M    +      ++          ++    + G E KGL     +E    
Sbjct: 61  YESLEDVISQMKGKLYLIS-KFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEK 119

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDEHVRSLNVSNTVCMIVYEALRQQN 151


>gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 171

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALY 274
               +    +     + G E  GL     ++       +      I++LN+SN AA+ +Y
Sbjct: 89  YHEADYTNPDHDYYFLFGKETTGLPEPFMKQHPEKALRIPQNDEHIRSLNLSNTAAIIIY 148

Query: 275 ITQNH 279
            T   
Sbjct: 149 ETLRQ 153


>gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 210

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 5/172 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           H       A +        R   L + ++++    NIG+I+R+A A     +    R   
Sbjct: 43  HFRYWKMEAIVAELNAVKERGKWLEVAIENLGHDFNIGSIVRTANAMGVRHVHIVGRRRW 102

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
                   +         +      +       +        + +   PLE+ +      
Sbjct: 103 ----NRRGAMVTDRYMQVHHHPDVESFQAAMQEAGMRIVGVDNIERSVPLEETVLPLNCV 158

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281
           +++G E  GL P+    +  + H+   G  +++NV +AAA++++     H A
Sbjct: 159 MVMGEESTGLSPEMAAISEEIVHITQYGSTRSMNVGHAAAISMWAWVLQHRA 210


>gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 181

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 5/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +    L          + +++       P N G I R+  A +    I      P +   
Sbjct: 1   MNIEELDYHEEPNKATNHIVLF--QPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRK 58

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     E +      +L + ++K           ++                 + G 
Sbjct: 59  MKRAGLDYWEKLDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGR 117

Query: 236 EGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E KGL  +  +        + M    +++LN+SN   + +Y     
Sbjct: 118 EDKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 270

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHM--PGIIK--ALNVSNAAAVALYITQN 278
             ++AL+ G+E  GL  +     + +  + M  P   +  ++N+  + AV LY    
Sbjct: 130 PQQVALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTR 186


>gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis ATCC 14018]
 gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 227

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +       P N G+ +R          +        +   L ++      H     + + 
Sbjct: 75  LCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDY--HDMAHVVMHP 132

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE--TATSM 251
                       + I  ++++ K            L+ G E   +               
Sbjct: 133 NFENLVESMPNSRIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAGPHVAEQ 192

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M   +++LN++N A++A+Y      
Sbjct: 193 VRLPMRPSLRSLNLTNCASIAIYEAWRQL 221


>gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus
           succinogenes 130Z]
          Length = 249

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  +IA++ G E  GL            ++       +LN++ A  +  Y  +
Sbjct: 106 KCGQIAIVFGRERVGLTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELR 158


>gi|295132643|ref|YP_003583319.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87]
 gi|294980658|gb|ADF51123.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87]
          Length = 150

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 7/153 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D +      + + +   P N+G + RSA       I T       ++         A
Sbjct: 1   MKVDNLEQGFFGIGIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTH----KA 56

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +PY    N  D    +            +  +PLE      +   +LGAE  GL  +
Sbjct: 57  VGAMPYFHYENFKDFYAHLPKGAMLVGVELDEGAEPLETFKHPRRCVYLLGAEDHGLSKQ 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             E +  +          +LNVS A ++ +Y  
Sbjct: 117 AIEKSHFLVK---FKSTLSLNVSVAGSIIMYDR 146


>gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 169

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    +    +       ++   + ++     + +  + 
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTVLHLIKPLGFSTDDKHMRRAGLDYWDKVKVVY 60

Query: 192 ISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETAT 249
             +  +             +   +          ++     + G E  GL     ++   
Sbjct: 61  HDDLPSFIQTVPDLKHLYIVSKFATRDYTDVDYTESGDHYFLFGKETTGLPEPFMRKYPE 120

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
               +      I+ALN+SN+AA+ +Y     
Sbjct: 121 LAIRIPQNDQNIRALNLSNSAAIIIYEALRQ 151


>gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
          Length = 167

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +L D +++M    +      ++     E          + G E KGL  +        
Sbjct: 61  YDSLEDFMEQMDGRLYLIS-KFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEFMRCHPEK 119

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151


>gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 190

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      ++
Sbjct: 28  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDSI 87

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + ++K           +                  + G E KGL     +E       +
Sbjct: 88  EEFMEKCDGQVHLISKFAEKVYSDENYND-GKYHYFLFGREDKGLPEAFMRENPEKALRI 146

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 147 PMNDEHVRSLNLSNTVCMIVYEALRQ 172


>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
          Length = 565

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL    ++ A     +              + +LNVS A+A+  
Sbjct: 471 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 525


>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
 gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
          Length = 623

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL    ++ A     +              + +LNVS A+A+  
Sbjct: 529 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 583



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 19/98 (19%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK---------------NALARLDWDANLPHPFP 92
           + F+YG   V AAL    RK+++L   +                 +        L     
Sbjct: 263 SEFIYGASAVLAALRCGRRKLYKLYIYETPDKVSLRLGRNPTREPMFDTIIKFGLAAGVC 322

Query: 93  VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           VK V    P+ +DK+ G    H G  LE + L    +D
Sbjct: 323 VKQVAGNWPKLLDKMSG-GRPHNGCILEASQLPKLPVD 359


>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 565

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL    ++ A     +              + +LNVS A+A+  
Sbjct: 471 PCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVASALLC 525


>gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36]
 gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36]
          Length = 184

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLDDFMEQMDGQLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|146301635|ref|YP_001196226.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156053|gb|ABQ06907.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 152

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +   +LGAE  GL  K  +    +         K+LNV+ A  V +Y    + +K
Sbjct: 95  FEHPRRCVYLLGAEDHGLSKKAMDKCHHLVK---FKSEKSLNVAVAGTVVMYD--RNLSK 149


>gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 167

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D +++M    +      ++     E          + G E KGL  +  +     
Sbjct: 61  YESLDDFMEQMEGRLYLIS-KFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEK 119

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151


>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
 gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
          Length = 237

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           IA++ G E  GL  +       + H+        LN+S+A A+ LY+      K
Sbjct: 110 IAVVFGRESVGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYKVLRK 163


>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
 gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
          Length = 230

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                       +E+   + A++ G E  GL  +  +    +  +        +NVS+AA
Sbjct: 85  YIRRPYYTPEELREMIKGETAILFGREDYGLYDEELKLCNVIVSVPTSEEYPVMNVSHAA 144

Query: 270 AVALYITQN 278
           AV LY    
Sbjct: 145 AVILYELSK 153


>gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 283

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++A++ G E  GL  +  + + ++  +       +LNV+ A  +ALY  
Sbjct: 110 QGRVAIMFGREDHGLPNEALDRSNAICTIPTTEHF-SLNVAQACLLALYEL 159


>gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 169

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQ-ETAT 249
             +L   ++ +       I     +    + +   +     + G E  GL  +   +   
Sbjct: 61  HEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPE 120

Query: 250 SMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           +   +      I+ALN+SN+AA+ +Y     
Sbjct: 121 NAIRIPQNDNNIRALNLSNSAAIVIYEVLRQ 151


>gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 230

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  ++ G E +GL P  Q     +  +   G  ++LNV +AAA++++  + 
Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 221


>gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 230

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  ++ G E +GL P  Q     +  +   G  ++LNV +AAA++++  + 
Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 221


>gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 72/226 (31%), Gaps = 6/226 (2%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLA 115
              L         +  T++ L R      L    PV    V    +  +   +     +A
Sbjct: 2   RELLRWQPELADDVFVTRDFLDRSPEFVELVAETPVHAHLVSDAVVRVVADADTPPGIVA 61

Query: 116 LETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +       L+  L  +       VL  V DP N+G ++R+A A     ++     S   +
Sbjct: 62  VARWQPADLADCLGRLGPQGFGAVLSEVRDPGNLGTVIRAADAAGAAFVVV-TDASVDVT 120

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
                 ++    H   +        L+       + +     +   L +   +     + 
Sbjct: 121 NPKVVRSTAGSLHHIDVVTGIAFPDLRAATGGTVRLVAADGYASTQLPEADLDGPHLWVF 180

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQN 278
           G E +GL         +   + + G  ++LN+  AAAV LY     
Sbjct: 181 GNEARGLPDDQVAACDAAVAVPLHGRAESLNLGTAAAVCLYASAMR 226


>gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 198

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  ++ G E +GL P  Q     +  +   G  ++LNV +AAA++++  + 
Sbjct: 136 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRR 189


>gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 262

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVAL 273
                K  +++G+E  G+ P+  + A      + M GI  ++NVS A  + +
Sbjct: 201 FDFPKKGIVVIGSEELGVSPEAVKKAQGRVITIPMYGIKASINVSVAFGICM 252


>gi|54027361|ref|YP_121603.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54018869|dbj|BAD60239.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 235

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  L+ G EG G+    ++ A     +   G  +++N   AA +A++    
Sbjct: 173 LPRECLLLFGQEGPGVTEPAKQAAAMTVSIAQFGSTRSINAGVAAGIAMHAWIR 226


>gi|213618929|ref|ZP_03372755.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 54

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 238 KGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +GL     +         + M    +++N+SNA +V +Y      
Sbjct: 1   RGLPASILDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 45


>gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
 gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
          Length = 246

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + KI+L+ G E  GL     +    ++ +       +LN++ A  +  +  +
Sbjct: 112 DQKISLVFGNETNGLSNDEIKHCQLLSFIDANKSYSSLNLAQAVQICCHELR 163


>gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT]
 gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta
           thermophila PT]
          Length = 243

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K+  +AL+LG E  GL          +  +        +N+S+AA V LY  
Sbjct: 109 KDGTVALLLGREDWGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYEL 160


>gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353]
          Length = 167

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     P N G I R+  A +    I      P +   + ++     + +    
Sbjct: 1   MKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLKITY 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
             +L D +++M    +      ++     E          + G E KGL  +  +     
Sbjct: 61  YESLDDFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFGREDKGLPEEFMRRHPEK 119

Query: 251 MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
              + M    +++LNVSN   + +Y       
Sbjct: 120 ALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 151


>gi|289668561|ref|ZP_06489636.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 108

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
              ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 48  LPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 102


>gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 197

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
              ++  ++GAE +G+             +   G +++LNV++A AV  A +  +
Sbjct: 137 LPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHAR 191


>gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
          Length = 181

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 5/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +    L          + +++       P N G I R+  A +    I      P +   
Sbjct: 1   MNIEELNYHEEPNKATNHIVLF--QPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRK 58

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     + +      +L + ++K           ++                 + G 
Sbjct: 59  MKRAGLDYWDKLDVTFYDSLDEFMEKCDGEVHLISKFANKVYSDENYND-GKHHYFLFGR 117

Query: 236 EGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           E KGL  +  +        + M    +++LN+SN   + +Y     
Sbjct: 118 EDKGLPEEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36]
 gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36]
          Length = 238

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  +AL+ G E  GL  +  +  T    +       +LN++ A  +  Y T+
Sbjct: 106 NYPVALVFGRERIGLTNEELQKCTYHVCVAANPEYSSLNLAMAVQILTYETR 157


>gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 269

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAV----AFSCDGIITTKRYSPSESAVLAKSASGA 183
             +   +L+  +H ++   +   +                     S   +A        A
Sbjct: 1   MRKFRVVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNA 60

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                +                 F +    +  +   +   ++  IAL+ G E  GL  +
Sbjct: 61  KVVHKFEDAIGDCSCAVAYSRRIFASSIKHTMVQNLSDMLPEDGTIALVFGRESCGLALE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                T    + +PG++ +LN+  A +++LY    
Sbjct: 121 EVNACTYQCEIPVPGLM-SLNLGQAVSISLYELCR 154


>gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
 gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
          Length = 181

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D L K+          +         +        I G E KGL  +  +E +     +
Sbjct: 79  DDFLGKVDGQIHLISKFAEKVYSDHNYDDGQAH-YFIFGREDKGLPEEFMREHSEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALKQ 163


>gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 239

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++A++ G E  GL  +         ++       +LN++ A  +  Y  +
Sbjct: 103 QGQVAIVFGRERVGLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMR 154


>gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 262

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVAL 273
                K  +++G+E  G+ P+  + A      + M GI  ++NVS A  + +
Sbjct: 201 FEFPKKGIVVIGSEELGVSPEAVKKAQGRVITIPMYGIKASINVSVAFGICM 252


>gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans
          Length = 1203

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   +   K  +++G E +G+             +   G  ++LNV   AA+ +
Sbjct: 1137 MMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1191


>gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.]
 gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus
           kodakarensis KOD1]
          Length = 235

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ +  G E  GL+ +  +       +        +N++ AAAV LY      
Sbjct: 101 YPGEVGIFFGRESIGLKNEELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYELSKKR 156


>gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299]
 gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299]
          Length = 247

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +     +        + + G         ++   E+        L+ GAE  GL   
Sbjct: 125 CVRVHDDWDAFHAYWRDALGAPGRLVAFSKFGARPHAEEGAYRSGDWLLFGAETTGLPGA 184

Query: 244 TQETATS---MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
             +       +  + +    +++LN++ +A V +Y      
Sbjct: 185 AHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQI 225


>gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367]
 gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC
           367]
          Length = 170

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            + G E  GL     ++ A     +      I+ALN+SN+AA+ +Y     
Sbjct: 102 FLFGKETTGLPEPFMRQHAEKCIRIPQDDTHIRALNLSNSAAIVIYEVLRQ 152


>gi|149371529|ref|ZP_01890945.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
 gi|149355156|gb|EDM43716.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
          Length = 153

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              D    +   + + +   P N+GA+ R+A       I T  +   ++++        A
Sbjct: 1   MQPDNFTTTYFGIGIMNGKTPANLGALWRTAQNMGASYIFTIGKRYANQASDTH----NA 56

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           ++ +PY    +  D  + +            D  + LE      +   +LGAE  GL  +
Sbjct: 57  VKSMPYFHYKSFDDFFEHLPKGVRIVGVEKDDRAENLEDFNHPRRCVYLLGAEDHGLTKE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +  +          +LNV+ A ++ LY    +
Sbjct: 117 AIDKSHFLV---QFKSEFSLNVAIAGSIVLYDRSRN 149


>gi|82538817|ref|XP_723834.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478269|gb|EAA15399.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 339

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 76/244 (31%), Gaps = 6/244 (2%)

Query: 7   KKSEKIFSLK----DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           K+ +KI  +K    ++ Y  + +  +  K +    +KS    +    F+ G  T+     
Sbjct: 90  KEQKKIDYIKKNGENNEYLSISKRSKLMKYIIRLRKKSNFRKKNNAFFVKGTQTIINLSK 149

Query: 63  NPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           + +  +  +L+      +   +  N  +      +    +D +   +  +          
Sbjct: 150 DHNLTMEVILSNSKPFLKYFQNKCNKLYYVNNDILNYIFLDSLKFMKDKNYDSVAIVKIP 209

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                   +  + L+ LD +   +N+G IL  A + + D I          +  +     
Sbjct: 210 NIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNVMDITK 269

Query: 182 GALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G    IPY   S          +         +    +   +   N  I  ILG E  G 
Sbjct: 270 GKHLFIPYNVGSYNELNKFCEQNNLVPIVAHTNGMDPQSFXKNXTNQGICFILGNESYGP 329

Query: 241 RPKT 244
               
Sbjct: 330 HKDI 333


>gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 184

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLDDFMEQMDGKLYLIS-KFAEKVYSEEYFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus
           fervidus DSM 2088]
 gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus
           fervidus DSM 2088]
          Length = 231

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               A++ G E  GL          +  +        +NVS+AAAV  Y    
Sbjct: 105 QKNTAILFGREDHGLYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFK 157


>gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
 gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
          Length = 255

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   AL+ G E +GL       A  +  L       ++N+S+A A+ LY  +    
Sbjct: 109 DGPSALVFGREDRGLSNNELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRN 164


>gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans]
 gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans]
          Length = 1225

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   +   K  +++G E +G+             +   G  ++LNV   AA+ +
Sbjct: 1159 MMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 1213


>gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
 gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
          Length = 243

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ L  G E  GL+ +  E    +  +        +N++ A AV LY      
Sbjct: 111 YTGEVGLFFGRESIGLKNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSKTR 166


>gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
 gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
          Length = 293

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ A++ GAE  GL  +    A ++  + +     +LN++ A  V  Y    
Sbjct: 143 ERTAILFGAEKAGLETEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQ 194


>gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
 gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
          Length = 232

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L+ G E  GL  +       M  +        LN+S+A ++ LY    
Sbjct: 106 LVFGRESVGLTREEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWK 153


>gi|218509319|ref|ZP_03507197.1| probable RNA methylase protein [Rhizobium etli Brasil 5]
          Length = 83

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++AL++G EG+GL           A +     + +LN + A  +AL+
Sbjct: 29  RMALVVGTEGEGLPEALLARF-QSARIPQSDELDSLNAATATGIALF 74


>gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 251

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E  GL  +     T    +       +LN+S+A  +  Y    
Sbjct: 113 FGNERTGLTDEELAECTVGVTIPSHESFASLNLSHAVQIICYTLFR 158


>gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 230

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  ++ G E +GL P  Q     +  +   G  ++LNV +AAA+ ++  + 
Sbjct: 168 LPSRTLMVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAIGIWAWRR 221


>gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 175

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 4/154 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  + L     P N G I R+  A +    +       ++  +L ++      ++  I 
Sbjct: 1   MKNHIALYQPLMPANTGNISRTCAASNAPLHLIHPLGFSTDDKMLKRAGLDYWHNVEIIE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLR-PKTQETA 248
             +    L  +       I   +          +N+      + G E  GL      E  
Sbjct: 61  HESFEAFLDYVGQRPMYLISKFAPRIYTEADLARNEADEQFFLFGKETTGLPLEFMLEHK 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
                + M    +++LN+SN   + L+       
Sbjct: 121 QDCLRIPMNDEHVRSLNLSNTVNIVLFEALRQQN 154


>gi|86134818|ref|ZP_01053400.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821681|gb|EAQ42828.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 152

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 9/150 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + + +   P N+G + RSA       I T       ++         A   +PY   
Sbjct: 9   FFGIGIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTH----KATGAMPYFHY 64

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N  D    +            +    LE      +   +LGAE  G+     E A  + 
Sbjct: 65  KNFDDFFDNLPKGAMLVGVELDEKSVQLETFTHPKRCVYLLGAEDHGIPKLAIEKAHHLV 124

Query: 253 HLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
                   + +LNV+ A ++ +Y  Q    
Sbjct: 125 K----FKSELSLNVAVAGSIVMYDRQAKLN 150


>gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
          Length = 201

 Score = 60.2 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 13/203 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGA 235
            +           +  +A+++G+
Sbjct: 179 DAKGSSDYRTMNVDMPLAIVIGS 201


>gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
 gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
          Length = 157

 Score = 60.2 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   +L MVL     P+N GAI RS VA   + I+        +   + ++ +   +H+ 
Sbjct: 1   MTKPRLKMVLVTPEIPYNTGAIGRSCVALGLELILIKPYGFSLDEKSVRRAGTDYWKHVD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
                +  D L+       Q      D  +       +    L+ G E  GL     +  
Sbjct: 61  LSEYDSWADFLETRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPASVLDGM 120

Query: 248 ATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278
              M HL M    +++LN++N A  A+Y    
Sbjct: 121 EDRMFHLPMLDTRVRSLNLANVATAAIYQAMR 152


>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
 gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 60.2 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +   IK  KIA++ G+E  GL  K  E   ++ ++       ++N++ A  +  Y T 
Sbjct: 91  PNINNHIKRGKIAVVFGSEKTGLSVKDIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETA 150

Query: 278 N 278
            
Sbjct: 151 K 151


>gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405]
 gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678]
 gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160]
 gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1]
          Length = 184

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLDDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 252

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           N+K+A++ G E KGL  +  E    +  +    +  +LN++ A  +  Y    
Sbjct: 112 NNKVAILFGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELMR 164


>gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
 gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
          Length = 263

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G E  GL  +       +  +        LN+  AA + LY  +
Sbjct: 130 PTALVFGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELR 179


>gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 358

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 22/262 (8%)

Query: 26  NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +    KK    + +      ++ ++     +YG +   A        I +L A      +
Sbjct: 99  DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGENACLALFEQRPASIVRLWAKVQMAHK 156

Query: 81  LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLL 135
           +    + L     V  +        V     H G+ +        TL    D       L
Sbjct: 157 IGDICSYLAANKKVYHIVESDELTKVSGTEHHGGICMLVKKSYPFTLQGYLDVPHQEDCL 216

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD VN+  NIG ILR+   F    ++  +  S + +  L  +  GA          + 
Sbjct: 217 VLLDGVNNAQNIGGILRTCAFFGVKNMVLEEAESLNSAVTLRVAEGGAEYVRVLETDDSR 276

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254
               Q  H+        +  +   L++    +K   +L    +G      E +     L 
Sbjct: 277 NALAQLRHAGYQIIHVSNDKNSTALDKVRLKNKTVFVL---SEGSTETLAEKSDEQVRLS 333

Query: 255 ---HMPGIIKALNVSNAAAVAL 273
               +      LNVS  A + L
Sbjct: 334 FGNPLKNG---LNVSVNAGILL 352


>gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 934

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 63/206 (30%), Gaps = 4/206 (1%)

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           +        L   +    + P+ + +         G       + +P      +   L+V
Sbjct: 727 IGETQDINKLRETYKRHIITPEQVVEQASPLQTKSGAWNSVMNIDNPRSAKDLSRSDLIV 786

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +  + D       +         G++T      ++       A  A + +P   +     
Sbjct: 787 VASLVDKPPNLGGICRLSDVLGVGLLTIHDMEVAKHPQFKNVAVTADQWMPMHEVKPEEI 846

Query: 198 ALQKMHSWGFQTI----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               +              +  S +  +      K  ++LG E +G+  +          
Sbjct: 847 KNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILLGKEKEGIPGELLAELDFCVE 906

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           +   GII+++N+  AAA+ ++   + 
Sbjct: 907 IKQVGIIRSMNIQTAAAIIVHAYSSQ 932


>gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans K601]
          Length = 270

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A + G+E  G+  +          +       +LN+  A  V  Y     
Sbjct: 138 VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYE-WRQ 187


>gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp.
           ND132]
 gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           desulfuricans ND132]
          Length = 252

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++A++ G E KGL  +     + +  +       +LN++ A  V LY 
Sbjct: 109 GRVAVVFGPEDKGLTNEETSVCSGLVTIPTSREDTSLNLAQAVVVVLYE 157


>gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 201

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 13/203 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD               ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGA 235
            +           +  +A+++G+
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGS 201


>gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
          Length = 271

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 113 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 161


>gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 279

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169


>gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 279

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169


>gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
 gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
          Length = 279

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169


>gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
          Length = 279

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169


>gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB900]
 gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB056]
 gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB058]
 gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB059]
 gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
 gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
          Length = 279

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 121 IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 169


>gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 244

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 86  IAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELR 134


>gi|323451439|gb|EGB07316.1| hypothetical protein AURANDRAFT_71849 [Aureococcus anophagefferens]
          Length = 3487

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  D+    LGAE  G+          +  L       + NV+ A A+ +Y   +   +
Sbjct: 808 FVHPDRAVYFLGAEDHGVPKDVLRACRHVVSLPAARSA-SYNVAVAGALVMYDRLSKRNR 866


>gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 276

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
            +++IAL+ G E  GL  +      ++  +      ++LN++ A  +  Y       
Sbjct: 126 YHNRIALLFGPENWGLTNEELAFCHALVTIPTA-AFRSLNLAQAVLLVAYEIFLARQ 181


>gi|269218069|ref|ZP_06161923.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213004|gb|EEZ79344.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 238

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             ++  L+ G E  G+ P+          +   G  +++NV+
Sbjct: 182 LPERCLLVFGQESSGISPELLAACDFAVRIEQYGSTRSMNVA 223


>gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
 gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
          Length = 253

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +AL+ G E  GL  +    A  + ++       +LN++ A  V  Y  
Sbjct: 114 VALLFGTEMSGLTNEEASRAQMLVNIPANPEFSSLNLAAAVQVISYEL 161


>gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 181

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +  I   ++
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVIFYDSI 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
              ++K           +            N     + G E KGL     +        +
Sbjct: 79  EKFMEKCDGKVHLISKFAEKVYSDENYNDGNHH-YFLFGREDKGLPEDFMRANPEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|86131592|ref|ZP_01050190.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818037|gb|EAQ39205.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 153

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 9/159 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              D   N    + + +   P N+G + RSA       I T       +++    + S  
Sbjct: 1   MQPDNFTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQASDTHNAVSAM 60

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +             +     G +    +   +          +   +LGAE  GL  +
Sbjct: 61  PYYHYDNFDDFFNHLPKGARIVGVELDERAQPLETFEH----PRRCVYLLGAEDHGLTRE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + +  +          +LNV+ A ++ LY      AK
Sbjct: 117 AIDRSHFLVK---FSSTLSLNVAVAGSIVLYD--RGLAK 150


>gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408]
          Length = 184

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPVDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLEDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 364

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 17/243 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPP 98
            ++ ++     +YG +   +        I ++  T     ++    + L     V  V  
Sbjct: 121 KKNRAEEMK--VYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVD 178

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +   +V     H G+ +        TL    D       L+VL+ V + HNIG I+R+ 
Sbjct: 179 NSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPHQKNCLLVLNGVRNAHNIGGIIRTC 238

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           V +    ++         +  +  +  G     P       T  ++   +        S+
Sbjct: 239 VCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSN 298

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270
              K ++Q   NDK+A +L +E         + A  + +L     +      LNVS A  
Sbjct: 299 KHAKTIKQLQLNDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATG 352

Query: 271 VAL 273
           + L
Sbjct: 353 ILL 355


>gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus
           denitrificans BC]
 gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans BC]
          Length = 270

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A + G+E  G+  +          +       +LN+  A  V  Y     
Sbjct: 138 VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYE-WRQ 187


>gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 184

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L + +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLNITYYESLDNFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 355

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           + S +  EKI   K      L        KK ++   K           +YG +   A  
Sbjct: 89  VKSSQFDEKIKEKK---TGPLSPRAPEKIKKNRAEEIK-----------VYGENACLALF 134

Query: 62  NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 I +L AT     ++    + L     V  +        V     H G+ +    
Sbjct: 135 EKRPGSIVRLWATVQMAHKIGDICSYLAANKKVYHIVDSEELTKVSGTEHHGGICMLVKK 194

Query: 121 LLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               TL    D   +   L++LD VN+  NIG ILR+   F    IIT    S +    L
Sbjct: 195 SHPFTLQGYLDVPHSEDCLVLLDGVNNAQNIGGILRTCAFFGVKHIITETPESLNSPITL 254

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +  GA                    +        +  +   L++    +K   +L   
Sbjct: 255 RVAEGGAEYIRVLETADTRHALAALRAADYQIVHIATGKNGTSLDKVRLKNKTVFVL--- 311

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
            +G              L     +K+ LNV+  A V L
Sbjct: 312 SEGSTEDLVNKEDEQVRLSFANPLKSNLNVAVNAGVLL 349


>gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
 gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
          Length = 184

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLDITYYESLEDFMEQMDGRLYLIS-KFAEKVYSEENFAAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
 gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 228

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 123 YHDMAHVVLHPDFDNLVQSMPNSRIIAFTAHATKLYTEIEYKPTDILLFGPEPGDIPDPM 182

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                        L M   +++LN++N A++A+Y       
Sbjct: 183 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 223


>gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 184

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +       L D +++M    +      ++     E          + G
Sbjct: 61  KMKRAGLDYWDKLNITYYERLDDFMEQMDGRLYLIS-KFAEKVYSEENFEAEGSHYFMFG 119

Query: 235 AEGKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +  +        + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745]
 gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC
           25745]
          Length = 172

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSM-AHLHMP-GIIKALNVSNAAAVALYITQNH 279
           ++   L+ G E  GL              +      I+ALN+SN+AA+ +Y     
Sbjct: 99  DEDNYLLFGKETTGLPEAFMRQYEECAIRIPQNDENIRALNLSNSAAIVIYEVLRQ 154


>gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
 gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
          Length = 241

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   A++ G E  GL     E    +  +        LN+  AA + LY  +
Sbjct: 107 LDADTAIVFGRERVGLTNDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELR 159


>gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus
           TPSY]
          Length = 264

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +A + G+E  G+  +          +       +LN+  A  V  Y  +   A
Sbjct: 128 VAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180


>gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42]
          Length = 264

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +A + G+E  G+  +          +       +LN+  A  V  Y  +   A
Sbjct: 128 VAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180


>gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 234

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              ++IAL+ G E  GL  +  E    +  + M     +LN+  A  V  Y  
Sbjct: 103 QWLNRIALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 155


>gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
 gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
          Length = 268

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + G E  GL     +    +  +       +LN++ A  V  Y   +   
Sbjct: 139 VFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCYELFSQVN 188


>gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
 gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
          Length = 253

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +A++ G E +GL         ++  +       +LN++ A  +  Y  
Sbjct: 115 VAILFGPEDRGLSNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYEL 161


>gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
 gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
          Length = 227

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K            L+ G E   +    
Sbjct: 122 YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 181

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                        L M   +++LN++N A++A+Y       
Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 222


>gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 244

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            K+ L+ G E  GL         ++  + +    ++LN++ A ++  Y  +
Sbjct: 119 RKVGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 169


>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 243

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++A + G E +GL  +     +  A +       +LN++ A  V LY     
Sbjct: 107 QSRVAFVFGREDRGLTTQEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRR 160


>gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 244

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri
           93-146]
          Length = 238

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 20/71 (28%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          E++      AL+ G E  GL          +  + M     +LN+
Sbjct: 85  FHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVFCYQL 155


>gi|308807789|ref|XP_003081205.1| unnamed protein product [Ostreococcus tauri]
 gi|116059667|emb|CAL55374.1| unnamed protein product [Ostreococcus tauri]
          Length = 308

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 7/144 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + + +  + +N+G + R++            R    ES      +  A  H      
Sbjct: 137 FFGIGIYNGKNENNLGTLWRTSYQLGAAYAFVVGRRFKKES------SDTANTHQHIPMY 190

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +       + ++     +       +PLE          +LG+E  GL            
Sbjct: 191 TYEDWNDFRRNTPYGAVLVAVEMGGEPLETFEHPKNCVYVLGSEDTGLNTSMLRACRHHV 250

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
            L       + NV+   A+ +Y  
Sbjct: 251 ALPATRTA-SYNVAVTGAILMYDR 273


>gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
 gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
          Length = 244

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 719

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278
             L++G+EG+GL    +  A     +        + +LNVS AA +       
Sbjct: 624 CLLVVGSEGEGLPRTVRRAADVEVAIANRSGSDVVDSLNVSVAAGLLCAAFLR 676



 Score = 38.3 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-----------LARLDWDANLPHPFPVKTVPP 98
           FLYG   V AAL +  R++++L   + A                    +     ++ V  
Sbjct: 385 FLYGRSVVEAALRSDRRQLYRLYVHRAAAEYGRHSRGRQQDDGIERLAVARGLSIQHVDA 444

Query: 99  --QTIDKIVGKEAVHQGL 114
             Q +   + K   H G 
Sbjct: 445 RGQRLMDKMSKGRPHNGY 462


>gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM
           1279]
 gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM
           1279]
          Length = 257

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++A++ G E  GL     + +  +  +       +LN++ A  +  Y  
Sbjct: 118 RGRVAVVFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYEI 168


>gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 228

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                     +    E++      A++ G E  GL  +    A  +  + M     +LN+
Sbjct: 85  YHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEELALADILTGVPMVADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVFCYQL 155


>gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MG346
 gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium
           G37]
 gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 166

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I+RS  AF  +  +            + ++     + I      + 
Sbjct: 8   IVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSW 67

Query: 196 TDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
              LQ                    +        +++  + G E KGL     +      
Sbjct: 68  EHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIMDNFKQNQ 127

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +   ++++N++NA    LY     
Sbjct: 128 IRIPIWNSVRSINLANAVVCILYEYSKQ 155


>gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 154

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN GAI R+ VA + + I+            + ++ +   +H+      + 
Sbjct: 7   IVLVAPEIPHNTGAIGRTCVALNLELILIKPYGFSLSEKTVIRAGTRYWKHVRLCEYEDW 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254
              L+                ++     +  D   L+ G E  GL  +        + H+
Sbjct: 67  QSFLEDRQPAQDDLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGLPSEVMLGREDRIFHV 126

Query: 255 HMPGI-IKALNVS-NAAAVALYITQN 278
            M    +K+LN+S  A AV  Y    
Sbjct: 127 PMRNPVVKSLNLSNVATAVI-YQAMR 151


>gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 157

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   ++ +VL     P N GAI R+ VA + + I+        +   + ++ +   +H+ 
Sbjct: 1   MPTPRMKIVLVTPEIPWNTGAIGRTCVALNLELILIKPLGFSLDEKSVRRAGTDYWKHVN 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
                +    ++       Q         + L +   +    L+ G E  GL     +  
Sbjct: 61  LTLYDDWVAFIEARKPTRDQLYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSLLDGL 120

Query: 248 ATSMAHLHM-PGIIKALNVS-NAAAVALYITQNHF 280
              + HL M    +++LN++  A AV     +   
Sbjct: 121 EDRVFHLPMLSDKVRSLNLANVATAVIFQAMKPQL 155


>gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 169

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K            L+ G E   +    
Sbjct: 64  YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYRPTDILLFGPEPGNIPDPM 123

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                        L M   +++LN++N A++A+Y       
Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLN 164


>gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 244

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
 gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
          Length = 252

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E  GL     E       +   G   +LN+S A  +  Y    
Sbjct: 106 ALVFGPEETGLINSDLEQCQVTVRIPT-GNYASLNLSQAVLLVCYEFLQ 153


>gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
 gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
          Length = 199

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 44/101 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKA--------------------- 262
             D   L+ G+E  G+  +    A      + M     +                     
Sbjct: 95  YRDGDYLVFGSESSGIPEELLAAAPERCERIPMLRDCDSLDNAEAWEAHEESLGHTEDDH 154

Query: 263 ----------------------LNVSNAAAVALYITQNHFA 281
                                 LN+SN+AA+ LY       
Sbjct: 155 EAILRQDICGNFVNPDDYRISALNLSNSAAIVLYEALRQTN 195


>gi|69249395|ref|ZP_00604960.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO]
 gi|68194182|gb|EAN08712.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO]
          Length = 34

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   ++ M G  ++LNV  AA + LY  
Sbjct: 1   MSLTDQNVYIPMKGNAESLNVGVAAGIVLYHF 32


>gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 244

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +  + L  E K   +A++ G E  GL     +       +       +LN++ 
Sbjct: 89  WPMLEPRECGEKLISEAKQHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAM 148

Query: 268 AAAVALYITQ 277
           A  +  Y  +
Sbjct: 149 AVQLLSYEVR 158


>gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 181

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     E +      NL
Sbjct: 19  IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDNL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D L K           +S        +    +   + G E KGL     ++       +
Sbjct: 79  EDFLDKCDGQLHLISKFASKVYSDEHFDD-GQRHYFLFGREDKGLPEAFMRKYPEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
          Length = 182

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +             ++ +      +  ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGKLHLITKFANKTYSDENYDD-SEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPGI-IKALNVSNAAAVALYITQNH 279
            +    +++LN+SN   + +Y     
Sbjct: 139 PVNDQHVRSLNLSNTVCMIVYEALRQ 164


>gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM
           6242]
 gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 231

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           IA+I G E  G   +  + +  +  +    I   +N+S+A  + LY    
Sbjct: 111 IAVIFGREDHGFTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEMSQ 160


>gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6]
 gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii
           GP-6]
          Length = 245

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K   +AL+LG E  GL          +  +        +N+S++AA+  Y  
Sbjct: 109 KEGMVALLLGREDCGLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYEL 160


>gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818]
 gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 156

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I R  VA      +        E   L ++     +++   
Sbjct: 1   MDTFHIVLVEPQIPQNTGNIGRLCVATDSILHLIHPLGFSVEQKELKRAGLDYWQNLQVY 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              NL +  +K           +   K    Q   +    L  G E +GL     E+A  
Sbjct: 61  EWQNLKEFWEKHPINERHFFFSTKAKKLYY-QADFSQGGFLYFGREDRGLDSSLAESA-R 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L M   I+++N++ +   ALY      
Sbjct: 119 AYRLPMVKGIRSVNLATSVGAALYEGLRQL 148


>gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 335

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 16/276 (5%)

Query: 10  EKIFSLKDSHYA-KLRRNHRDYKKMQ-SFNQKS--RHTSQPENLF-LYGVHTVSAALNNP 64
           E   S K+      ++  ++  K    + + ++  +  +   +   +YG H  SA     
Sbjct: 55  EANKSSKEGFVKVSVKDRNKPIKSKSGALSPRAPEKIRNNRASEMKVYGEHACSAIFQQR 114

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              I +L  T     +     +           V  + + ++ G E  H G+ L      
Sbjct: 115 PEAIVRLWITSECAKKTGALLSYLADHKKAYHLVDTEEMLRVTGTE-HHGGMCLLVKKST 173

Query: 123 SPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             +L+      R    L++LD VN+  NIG I+R+   +   GII       + S     
Sbjct: 174 PFSLEGYLQLERQHDCLILLDGVNNAQNIGGIIRTCAFYGIKGIIVENNDILNSSNAARV 233

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  G     P          +Q   +               L + + + KI  +L +E  
Sbjct: 234 AEGGLEFVYPLETKHKHIALMQLRKAGYQIVHLTRQRQAPHLSRIVLSKKIVFVL-SEV- 291

Query: 239 GLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
            +  + +    S+  L     + + LNV+  A + L
Sbjct: 292 -ISNEVEYPEDSIVQLSFANSLNSGLNVAVNAGILL 326


>gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
 gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score = 59.1 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +A++ G E +GL  +  +      ++       +LN++ +  V  Y  +
Sbjct: 109 MTWARRGPVAVVFGPEDRGLSHEQVDLCRLSINIPTS-QASSLNLAQSVIVLAYELR 164


>gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
          Length = 244

 Score = 59.1 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
 gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
          Length = 153

 Score = 59.1 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              ++  ++GAE +G+  +          +   G +++LNV++A AV 
Sbjct: 93  LPQRLVYVMGAESEGMDRQFARDCDLQLSIRGSGKVESLNVASATAVF 140


>gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 239

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++  + G+E  GL  +      S   +  P    +LN++ A  +  Y     
Sbjct: 109 RQRVGFVFGSERYGLSNEDVYRCHSCLSIPTPADYGSLNLAQAVQLIAYD-WRQ 161


>gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
 gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
          Length = 241

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              IAL+ G E  GL       +  +  LH      +LN+S+A AV L+    
Sbjct: 98  QQPIALVFGREDHGLTNAELLLSQRVITLHSSDTYPSLNLSHAVAVVLHDIAR 150


>gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           CC9311]
          Length = 243

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + AL+ G E +GL       +  +  LH   +  +LN+S+A AV L+  +   
Sbjct: 108 RSALVFGREDRGLSNDELLISHRVFKLHTGDVYPSLNLSHAVAVVLHELERER 160


>gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
 gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
          Length = 203

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGL 240
            + Q      +A+++GAEG G+
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGM 203


>gi|215402130|ref|ZP_03414311.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289744077|ref|ZP_06503455.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289684605|gb|EFD52093.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
          Length = 220

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +  L+ G EG G+    +  A     +   G  +++N   AA +A++ 
Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHA 208


>gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
 gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
          Length = 251

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
             ++AL+ G E  GL  +        + +       +LN++ A  +  Y   +  
Sbjct: 114 MHRVALVFGREDSGLTTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQ 168


>gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 172

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 1/134 (0%)

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G      +      I+   R+        A                 +       +   
Sbjct: 23  VGFNANLHLIRPYGFILDKARFDKDFVRASANHLDELKLFEYDDFYEFIAKNNIIENQIY 82

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSMAHLHMPGIIKALNV 265
           F T   +          +  + + L+ G E  G+     ++   +   +     +++LN+
Sbjct: 83  FFTRYGTKAPCDYKYANLNKEDVYLVFGKESTGIDHDILRKYPQNWIRIPTSINLRSLNI 142

Query: 266 SNAAAVALYITQNH 279
           +N+ A+ +Y     
Sbjct: 143 ANSVAMGIYEVLRQ 156


>gi|218459042|ref|ZP_03499133.1| probable RNA methylase protein [Rhizobium etli Kim 5]
          Length = 78

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++AL++G EG+GL           A +     + +LN + A  +AL+
Sbjct: 24  RMALVVGTEGEGLPAALLARF-QSARIPQSDELDSLNAATATGIALF 69


>gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 549

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              SS S + LE      +  L+LG E +G+    Q       H+ +   +++L+V+ AA
Sbjct: 474 HAPSSWSHRQLEDVAWPHRRVLVLGHETRGVPRDLQPFC-QPVHIAIHPGVESLSVAAAA 532

Query: 270 AVAL-----YITQNH 279
           A+       +     
Sbjct: 533 AILCDRVFAFECAKQ 547


>gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
 gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 244

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis]
          Length = 1397

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 3/182 (1%)

Query: 96   VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            V    + K    +                ++++V  S+L++V   V+   N+G I R   
Sbjct: 1209 VNSTELAKNSPLQTKSGAWEAVLDFDNQKSIESVARSELIVVASLVDKAPNLGGICRLCD 1268

Query: 156  AFSCDGIITTKRYSPSESAVLAKSASGALEH---IPYIRISNLTDALQKMHSWGFQTIGL 212
                  +                + +           +         +K+  +    +  
Sbjct: 1269 VLGVGTMTIHDIRVKQHPQFKNVAVTADRWMPIEEVPVDGIISYMNAKKLEGYTLIGLEQ 1328

Query: 213  SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  S +   +     K  ++LG E  G+     +       +   G+I+++N+  A AV 
Sbjct: 1329 TDSSIQLNSEFKFPSKSVILLGTEAHGIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVI 1388

Query: 273  LY 274
            ++
Sbjct: 1389 VH 1390


>gi|303274998|ref|XP_003056809.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461161|gb|EEH58454.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P     +                        PLE+    D+   +LG+E  GL   
Sbjct: 158 WTSLPAYAYEDWGAFASAQPHACSWVAVEMGTDATPLEEFEHPDRAIYVLGSEDNGLPSS 217

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVALYI--TQNHFAK 282
                     L    G   + NV+   +V +Y    +   A+
Sbjct: 218 VLRACAHRVALPAAEGRTASFNVAACGSVVMYDRVAKRRRAE 259


>gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 181

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D ++K           +         +   +    + G E KGL     ++       +
Sbjct: 79  DDFVEKCDGKLHLISKFAETVYSDERFDD-GENHYYLFGREDKGLPETFMRKHPEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
            M    +++LN+SN   + +Y     
Sbjct: 138 PMNDEHVRSLNLSNTVCMIVYEALRQ 163


>gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 233

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 +       P N G+ +R          +            L ++      H   
Sbjct: 75  ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 132

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246
             + +             + I  ++++ K   +        L+ G E   +         
Sbjct: 133 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKPNDILLFGPEPGDIPDPMDVMAG 192

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L M   +++LN++N A++A+Y      
Sbjct: 193 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 227


>gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
 gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
          Length = 229

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 +       P N G+ +R          +            L ++      H   
Sbjct: 71  ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246
             + +             + I  ++++ K   +        L+ G E   +         
Sbjct: 129 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKPNDILLFGPEPGDIPDPMDVMAG 188

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L M   +++LN++N A++A+Y      
Sbjct: 189 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223


>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
 gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
          Length = 434

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVAL 273
            + L++G+EG+G+R   +  +  +  +         + +LNV  A  V L
Sbjct: 379 PVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGVIL 428



 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 30/142 (21%)

Query: 2   NLISKKKSEKIFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPEN----------- 48
               +K        + +   K+  +R HR+ +       + +   + EN           
Sbjct: 61  EFFMRKYGNITPEQRKALDEKVARQRRHREMRIAHEKALRDKEREERENARQMARMSKKS 120

Query: 49  -----------------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
                             +++G H V AAL    R++ +L    N    +   A      
Sbjct: 121 SPSSGSAGLLERNDTFFDYIFGTHAVKAALTAGKRRVLELYTYNNVDPEITKLAENKFGI 180

Query: 92  PVKTVPPQTIDKIVGKEAVHQG 113
             + V  +    ++ K  VH G
Sbjct: 181 LPRMVRDKHALNVLCKNGVHNG 202


>gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
 gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
          Length = 248

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ AL+ G E  GL           A +       +LN++ A  +  Y  
Sbjct: 111 NRAALVFGREDSGLTTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYEL 160


>gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
          Length = 244

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +IA++ G E  GL            ++       +LN++ A  +  Y  +
Sbjct: 106 CGQIAIVFGREKFGLTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVSYELR 157


>gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
 gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
          Length = 244

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88]
          Length = 462

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A  +  +              + +LNVS A+A+  
Sbjct: 368 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422


>gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 280

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  +IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 118 KQQEIAIVFGREDRGLTNEELALANYHVTIPVNTDYGVLNVAQAIQVICYEMR 170


>gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143]
          Length = 419

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A  +  +              + +LNVS A+A+  
Sbjct: 325 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 379


>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 462

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A  +  +              + +LNVS A+A+  
Sbjct: 368 PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC 422


>gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus
           profundus DSM 14977]
 gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus
           profundus DSM 14977]
          Length = 240

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +AL+ G E  GL  +  + A ++  +   G   +LN++ A  +  Y  
Sbjct: 106 GPVALLFGRENFGLSNEEMDRAHAVWRIPT-GGYASLNLAQAVLLVAYEV 154


>gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 182

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 3/165 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                +  +     +S+  +VL     P N G I R+  A +    I      P +   +
Sbjct: 1   MMIVDIEHSQYREVDSKNHIVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKM 60

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++     E +      NL D L K +         +S        +    +   + G E
Sbjct: 61  RRAGLDYWEKLDVRFYDNLEDFLDKCNGQLHLISKFASKVYSDEHFDD-GQRHYFLFGRE 119

Query: 237 GKGLRPK-TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            KGL     ++       + M    +++LN+SN   + +Y     
Sbjct: 120 DKGLPEAFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEALRQ 164


>gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
 gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
          Length = 293

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               I G E  GL  +    A  +  L +     +LN++ A  V  Y  + 
Sbjct: 148 PTGYIFGRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRK 198


>gi|332519777|ref|ZP_08396241.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044336|gb|EGI80530.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 9/156 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D   N    + + +   P N+G + R+A       I T       ++         A++ 
Sbjct: 3   DNFENEYFGIGIQNGKTPENLGVLWRTAQNLGASYIFTIGNRYAKQACDTH----NAVKS 58

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY       D  + +            DS   LE      +   +LGAE  GL  +  E
Sbjct: 59  MPYFHYKTFEDFYKNIPKGARLVGVELDDSAVALETFHHPRRCVYLLGAEDHGLSKQAIE 118

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +          +LNV+ A ++ +Y       K
Sbjct: 119 KSHFLVK---FKSQLSLNVAVAGSIVMYD--RGINK 149


>gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34]
 gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus
           metallidurans CH34]
          Length = 289

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL        +++ H+    +  +LN++ A  +  Y  +
Sbjct: 142 VAFVFGNERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYEMR 190


>gi|255031038|ref|ZP_05302989.1| rRNA methylase [Listeria monocytogenes LO28]
          Length = 39

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 1   MSPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 39


>gi|221502243|gb|EEE27981.1| rRNA methylase, putative [Toxoplasma gondii VEG]
          Length = 440

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++A+++G E KG   +  +    +A +       +L+VS AAAV LY  Q 
Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416


>gi|237832273|ref|XP_002365434.1| rRNA methylase, putative [Toxoplasma gondii ME49]
 gi|211963098|gb|EEA98293.1| rRNA methylase, putative [Toxoplasma gondii ME49]
          Length = 440

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++A+++G E KG   +  +    +A +       +L+VS AAAV LY  Q 
Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416


>gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus
           petrolearius DSM 11571]
          Length = 247

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 26/73 (35%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +     S+     +    ++++I G E  GL  +       +  +        +N+
Sbjct: 87  HAMRMPYYEPSELRDMIKDIEGRVSIIFGRENWGLSNEEIMKCDIICTIPTSPEYPIVNI 146

Query: 266 SNAAAVALYITQN 278
           S+A  V +Y   N
Sbjct: 147 SHAVGVIVYELAN 159


>gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
 gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
          Length = 222

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            H     + +             + I  ++ + K   +        L+ G E   +   T
Sbjct: 117 YHDMAHVVLHPNFESLVESMPDSRIIAFTAHATKLYTEVEYRPNDILLFGPEPGNIPDPT 176

Query: 245 ----QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 177 DIMFGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 216


>gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 245

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +AL+ G E  GL  +  E    +  + M     +LN+  A  V  Y  
Sbjct: 114 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 166


>gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103]
 gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103]
          Length = 247

 Score = 58.7 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +AL+ G E  GL  +  E    +  + M     +LN+  A  V  Y  
Sbjct: 118 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 170


>gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
 gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
          Length = 234

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                +    + +  +     E K  +IA+  G E  GL  +  E    +  +       
Sbjct: 80  YSYERYIRKPIFTPEEFRNFLEGKKGEIAVAFGREDYGLFNEELELCHMLVSVPTNPEYP 139

Query: 262 ALNVSNAAAVALYITQN 278
            +NVS+A AV LY    
Sbjct: 140 VMNVSHAVAVILYELSK 156


>gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
 gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
          Length = 243

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 109 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 157


>gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
 gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
          Length = 170

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+    + +  +       ++   + ++     + +    
Sbjct: 1   MTNHIVLFEPLMPANTGNIARTCAGTNTELHLIKPLGFSTDDKYMKRAGLDYWDKVKITY 60

Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
             NL + L+ M      +     +  +   ++   ++     + G E  GL     ++  
Sbjct: 61  HENLPEFLESMDENDELYVVSKFAERTYADVDYTDESKNHYFLFGKETTGLPEIFMRKYE 120

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
                +      I+ALN+SN AA+ +Y     
Sbjct: 121 KKCIRIPQNDRNIRALNLSNTAAIVIYEALRQ 152


>gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
          Length = 184

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                 L   T   +   +  +VL     P N G I R+  A +    I      P +  
Sbjct: 1   MWLFFYLKKNTRKNILIMKNHIVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDR 60

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D +++M    +     +           ++     + G
Sbjct: 61  KMKRAGLDYWDKLDITYYDSLEDFMEQMDGRLYLISKFAEKVYSEENFAAESSH-YFMFG 119

Query: 235 AEGKGLRPKTQE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            E KGL  +           + M    +++LNVSN   + +Y       
Sbjct: 120 REDKGLPEEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQN 168


>gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355]
          Length = 234

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +AL+ G E  GL  +  E    +  + M     +LN+  A  V  Y  
Sbjct: 105 QWVNSMALVFGREDSGLTNEELEQVDLLTGIPMANDYPSLNLGQAVMVYCYQL 157


>gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
 gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
          Length = 210

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 3/107 (2%)

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
               A     H      +       ++           +D    L       + A +LG 
Sbjct: 45  NHAPADTTNSHDHMPWYTYSGIDTMQLPDDCRLVGVELTDDAIALPSFRHPLRAAYLLGP 104

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E   L P   E    +  +        LNV+ A AV +Y       +
Sbjct: 105 ENGSLSPDAMEKCEFIIKIPTAF---CLNVATAGAVIMYDRMQSLGR 148


>gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 167

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%)

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              S+D      Q   + ++AL+ G+E  G+     +T   M  +       +LN++ A 
Sbjct: 87  NNHSTDDTNDRHQHSNSIRLALVFGSEKTGMTESDMDTCHVMLGIPTNPQFGSLNLAAAV 146

Query: 270 AVALYITQ 277
            +  Y  +
Sbjct: 147 QLIAYDWR 154


>gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
          Length = 244

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1430

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 4/185 (2%)

Query: 94   KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            +T  P+ I+    +     G       + S   D       L+V+  + D       +  
Sbjct: 1239 QTKTPEEIESKTTQLQTKSGAWETVLDIDSEKSDRSVTRSDLIVVSSLVDKPPNLGGICR 1298

Query: 154  AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--- 210
                   G++T +             A  A   +P   +                     
Sbjct: 1299 LCDVLGVGLLTVQDIRVKNHPQFKNVAVTADRWMPMEEVPIDGIIEFMRAKKKEGYTLIG 1358

Query: 211  -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +  S +   +     K  ++LG E  G+             +   G+I+++N+  A 
Sbjct: 1359 LEQTDKSIQLNNKYTFPKKSLILLGTEAHGIPGHLLSELDLCLEIEQHGVIRSMNIQTAT 1418

Query: 270  AVALY 274
            AV +Y
Sbjct: 1419 AVIVY 1423


>gi|54023445|ref|YP_117687.1| hypothetical protein nfa14780 [Nocardia farcinica IFM 10152]
 gi|54014953|dbj|BAD56323.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 165

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + + H     N+G + RSA+ +    + T  R         A   + A   IP    
Sbjct: 4   FFGVAVWHPKHEVNVGTLWRSALTYEAAMLATVGRRYK----PQAGDTTKAPNSIPLHHF 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            ++ D +  +               + L       +   +LGAE  GL          + 
Sbjct: 60  EDVADLVDHLPHGCPLIGVELDPRAESLTTFAHPRRALYLLGAEDHGLPEAVLTLCHQVI 119

Query: 253 HLHMPGIIKALNVSNAAAVALY-----ITQN 278
            +       +LNVS A ++ L+      +Q 
Sbjct: 120 QIP-SPAPWSLNVSVAGSLVLHDRFVKESQR 149


>gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
 gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
          Length = 175

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                        K   +  +    +        +  K+ ++ L+ G E  G+     + 
Sbjct: 61  HDSYKDFYNKYKNKNIYYITRYGLRTYTENNFKNEYDKHKEVWLMFGRESTGIDKSILQN 120

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   + M   ++++N++N+  +  +      
Sbjct: 121 NLENCLRIPMVSEMRSINLANSVCILGFEVMRQL 154


>gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
 gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
          Length = 251

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +     +   S  +        +  I+++ G E  GL  +    A  +  +    +  
Sbjct: 82  YSACHPTRMPFYSPKEIRDLIRDLDGTISILFGRENWGLSNEEVRRADIICTIPTSPLYP 141

Query: 262 ALNVSNAAAVALYITQN 278
            +N+S+A  V  Y   N
Sbjct: 142 IINLSHAVGVICYELAN 158


>gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 107 QHSVAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 264

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +++ L+ G E  GL  +  +     + +   G   +LN++ A A+  Y   
Sbjct: 117 NRVGLMFGPEDSGLSNEDLDLCQFASTIPTAG-FSSLNLAQAVAIHCYELY 166


>gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 332

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            AL+ G EG GL      +   +  +        LN+  AA V LY  +
Sbjct: 115 TALVFGREGTGLTNDELTSLDEVCSIPANESYPVLNLGQAATVLLYELR 163


>gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
 gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
          Length = 241

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +AL+ G E  GL     +      ++        LNVS A  +  Y  
Sbjct: 110 VALVFGRETMGLHNHELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEI 157


>gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
 gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
          Length = 565

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A     +              + +LNVS A+A+  
Sbjct: 481 PCVLMLGGEGSGLQQKIKNRADMFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 535


>gi|291298242|ref|YP_003509520.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290567462|gb|ADD40427.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 205

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + +++     NIG ++R+A AF+   +    +   +    +       + H   
Sbjct: 54  HRHDFHVAIENWQHDFNIGTVVRNANAFAAKAVHIVGKRRWNRRGAMVTDRYQHVHHHDT 113

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I          ++   G   +  S   +             L  G EG GL    ++ + 
Sbjct: 114 IDGFVDWAQRHELPIIGIDNLPGSVPLET----TTLPSACVLFFGQEGPGLSRAARDASR 169

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  +++N   A+ +A++    
Sbjct: 170 LVCSIAQFGSTRSINAGVASGIAMHAWIR 198


>gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
 gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
          Length = 233

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +          ++ L  G E  GL+    E    +  +        +N++ A AV L
Sbjct: 90  YPWELRETLNGYTGEVGLFFGRESIGLKNDELERLDLIVTIPTSDAYPVMNLAQAVAVIL 149

Query: 274 YITQN 278
           Y    
Sbjct: 150 YELSK 154


>gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 257

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++ G E  GL  +       +  +       ++N++ A  +  Y   
Sbjct: 114 AILFGTESSGLTNEQLRFCDFLVTIPTADFA-SINLAQAVMIVAYELY 160


>gi|255023185|ref|ZP_05295171.1| hypothetical protein LmonocyFSL_06450 [Listeria monocytogenes FSL
          J1-208]
          Length = 63

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 19/72 (26%)

Query: 1  MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
          M  I   K++++ + K                        +   +     + G H V  A
Sbjct: 1  MEQIQSVKNDRVKTWKKLQT-------------------RKGRDKTGTYLVEGFHLVEEA 41

Query: 61 LNNPSRKIFQLL 72
          L      +  L+
Sbjct: 42 LRQDGLVLELLV 53


>gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
          Length = 229

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 6/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 +       P N G+ +R          +            L ++      H   
Sbjct: 71  ETHTPHLCFYSPRIPGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDY--HDMA 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP--KTQE- 246
             + +             + I  ++++ K   +        L+ G E   +         
Sbjct: 129 HVVLHPNFENLVESMPNSRIIAFTANATKLYTEIEYKSNDILLFGPEPGDIPDPMDVMAG 188

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L M   +++LN++N A++A+Y      
Sbjct: 189 PHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 223


>gi|254472132|ref|ZP_05085532.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
 gi|211958415|gb|EEA93615.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
          Length = 186

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +  + ++   N+G ++R+  AF      T   +     A +    S + +H+PY   
Sbjct: 4   YFAIGSEGLSKSMNVGTLMRTGHAFGASYFFTVDAHIKGLGAAMKADTSKSPDHLPYFAW 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +++ +                   + P          A ILG E   L  + QE    + 
Sbjct: 64  NSVDEMQFPRGCKLVGVELTDDAIELPSFGHPLQ--AAYILGPERGSLSKEMQERCDYIV 121

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
            +        LNV  AAA+ LY   
Sbjct: 122 KIPTKF---CLNVGVAAALVLYDRY 143


>gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
 gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
          Length = 1423

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%)

Query: 224  IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K  ++LG E +G+  +          +   GI++++N+  A AV ++   + 
Sbjct: 1366 QFPKKSLILLGREKEGIPGELLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQ 1421


>gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 238

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ +     +        L+ G E   +    
Sbjct: 133 YHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDIPDPM 192

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                          M   +++LN++N A++ALY     
Sbjct: 193 DIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 231


>gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 231

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ +     +        L+ G E   +    
Sbjct: 126 YHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDIPDPM 185

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                          M   +++LN++N A++ALY     
Sbjct: 186 DIMAGPHIYQQVRFPMRPSLRSLNLANCASIALYEAWRQ 224


>gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 251

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++AL+ G E +GL  +       + ++   G   +LN++ A  +  Y    
Sbjct: 112 NRVALVFGREDRGLSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFK 162


>gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 510

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A +   +              + +LNVS A+A+  
Sbjct: 427 PCVLMLGGEGSGLQQKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC 481


>gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
 gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
          Length = 244

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 110 VAMVFGRERTGLTNDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 221

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K            L+ G E   +    
Sbjct: 116 YHDMAHVVLHPNFENLVESMPNSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 175

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215


>gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
          Length = 221

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K            L+ G E   +    
Sbjct: 116 YHDMAHVVLHPNFENLVESMPNSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 175

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 215


>gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07]
          Length = 243

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +K A+I G E  GL  +  +       +       +LN+S+A  +  +  + 
Sbjct: 112 KNKTAVIFGREDNGLSNEELQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRK 164


>gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 242

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           AL+ G E +GL  +       +  + M     +LN++   +V LY 
Sbjct: 109 ALVFGREDRGLSNEELALCDLLTGIPMKVTYPSLNLAQ--SVMLYA 152


>gi|301155625|emb|CBW15093.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 357

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 16/257 (6%)

Query: 28  RDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
              KK  + + +      ++ ++     +YG +            I ++ AT     R+ 
Sbjct: 100 PKEKKTGALSPRAPEKIKKNRAEEMK--VYGENACLELFAERPESIVRVWATVQMAHRIG 157

Query: 83  WDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMV 137
              + L     V  V       +V     H G+ +      + +    LD  R    L+V
Sbjct: 158 EIFSYLAANKKVYHVVDSDELSLVSGTEHHGGICMLVKKQRTFSLQGYLDVPRQEDCLVV 217

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD VN+  N+G ++R+ V +    ++T +       A +  +  G          S    
Sbjct: 218 LDQVNNAQNLGGVVRTCVFYGIKNVVTNQVEQLYAPAAMRVAEGGMEHIRILETESTEIA 277

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                 +        ++     LEQ     K+AL+L    +G     +E       L + 
Sbjct: 278 LEALRKAGYQIIHVSTNKQGIALEQLKFAAKVALVL---SEGSTDDIREKEDVNVRLSLS 334

Query: 258 GIIKA-LNVSNAAAVAL 273
             +K  LN++    + L
Sbjct: 335 NPLKTGLNIAVNTGILL 351


>gi|242022188|ref|XP_002431523.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
 gi|212516817|gb|EEB18785.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
          Length = 1475

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               K  L+LG E +G+ P           +   GII++LNV     V L+
Sbjct: 1422 FPKKSLLLLGNEKEGIPPNLLPLLDICVEIPQVGIIRSLNVHVTGDVMLF 1471


>gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8]
 gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei
           6A8]
          Length = 261

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +   S  +      I   +++++ G E  GL     + +  +  +        +N
Sbjct: 85  CNPMRMPFYSPRELRERIGIAEGRVSILFGRENWGLNNDEVKRSDMICTIPTSDEYPIMN 144

Query: 265 VSNAAAVALYITQN 278
           +S+A  +  Y   N
Sbjct: 145 LSHAVGIVCYELAN 158


>gi|325117118|emb|CBZ52670.1| putative rRNA methylase [Neospora caninum Liverpool]
          Length = 545

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +A+++G E KG   +  +    +A +       +L+VS AAAV LY  Q 
Sbjct: 473 LAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 521


>gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
 gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
          Length = 252

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL+ G E  GL  +  + A  +  +       +LN++ A  V  Y    
Sbjct: 112 VALVFGRETFGLTNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQ 161


>gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 230

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYITQNHFAK 282
            KIAL+ G E  GL     E     +++ +     +LN++ A  V   AL    N   +
Sbjct: 106 KKIALLFGRESSGLSNSELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQ 164


>gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000]
 gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000]
          Length = 263

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+ G E  GL         ++  + +    ++LN++ A ++  Y  +
Sbjct: 119 LLFGGERAGLETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 165


>gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 251

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+ G E  GL         ++  + +    ++LN++ A ++  Y  +
Sbjct: 107 LLFGGERAGLETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWK 153


>gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 282

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 119 QQDVAVVFGREDRGLTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMR 170


>gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790]
 gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790]
          Length = 235

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +   ++AL+ G E  GL             +         N+S+A A+ LY  
Sbjct: 98  YFWDNYGLNGKRVALVFGREDNGLNNYELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEM 157

Query: 277 QNH 279
              
Sbjct: 158 IKR 160


>gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 369

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 21/283 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRN-----HRDYKKMQSFNQK-----SRHTSQPENLFLYGVHT 56
            +  KI   K  +   + +          KK  S + +      ++ ++     +YG   
Sbjct: 87  PQETKITETKLGNVKVVMKRSGVSEQPRVKKTGSLSPRAPEKIKKNRAEEMK--VYGESA 144

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
             A        I ++ AT     ++    + L     V  V  +   ++V     H G+ 
Sbjct: 145 CLALFAERPESIVRVWATVEMAHKIGDMFSYLAANKKVYHVVERAELELVSGTEHHGGIC 204

Query: 116 LETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +        TL    D  R    L++LD+V +P NIG I+R+   +   G+I       +
Sbjct: 205 MLVKKARPFTLTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCAFYGVKGVIVDNAELLN 264

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +A +  +  G          S      +   +        ++   K + +     K+  
Sbjct: 265 SAAAMRVAEGGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVF 324

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
           +L  E +   P   ++   + +L     +K  LNV+ AA V L
Sbjct: 325 VL-TESE--NPALVQSGDEVINLSFANPLKTGLNVAVAAGVLL 364


>gi|284044449|ref|YP_003394789.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283948670|gb|ADB51414.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 261

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  L  G E  GL       A     + M   + +LN++ A +  L+
Sbjct: 209 QLPPGAILAFGTERHGLSDALLTCAELRLRIEMRAGVSSLNLATAVSAVLF 259


>gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 269

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 15/245 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
            D++ +++ ++          + + GV  V   L +P R +  +L     LA LD    L
Sbjct: 17  ADFRDLKAGDRPPGTERGTGPVIVEGVPAVERLLTSPYR-VRAVLGVPGRLAALD----L 71

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHV 141
           P   P        + +++G     +G+           LD           + L VL+ +
Sbjct: 72  PEGVPAYEADKWVLSEVIGFRLT-RGVLASADRRPPADLDALLTGPDPAAPRRLAVLEAL 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ND  N+G+I RSAVA   DG++   R +        + + G +  +P+  + +    L +
Sbjct: 131 NDAENLGSIARSAVALGVDGLLLDPRCADPLYRRSVRVSMGHVLALPFAALPDWPGGLDR 190

Query: 202 MHSWGFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +H  G+ T+ L+               + + A++LGAEG GL P+ Q  A   A + M  
Sbjct: 191 LHDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARVRARIPMRT 250

Query: 259 IIKAL 263
            + +L
Sbjct: 251 GVDSL 255


>gi|312375375|gb|EFR22762.1| hypothetical protein AND_14238 [Anopheles darlingi]
          Length = 407

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 19/248 (7%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
              Y  L+ N   Y  ++      +   + + L L G   +        R    + +   
Sbjct: 161 KLRYTVLQSNDARYGDLKMLVSSRKRREREKMLVLEGRRLILDGCAAGLRLEAVVASDVK 220

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132
            L  L   +N P   P   V  QT+ +          + +  AP     + A  ++    
Sbjct: 221 LLGELGLKSN-PKDCPFFLVNRQTMMEWSSLTTSPGLIGVFAAPQNLAEVIARNSTAGGS 279

Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + +V D++ +P+N+G+++RS  A S   +I  K  +        +  +G+   IP 
Sbjct: 280 KRLPVTVVCDNIREPNNLGSVIRSCAAVSAQEVILLKGCAHPWDLKCLRGGAGSHFRIPI 339

Query: 190 IRISNLTDALQKMHSWGFQTI-----------GLSSDSKKPLEQEIKNDKIALILGAEGK 238
                L    +   +     I           G     +         D + L +G E  
Sbjct: 340 HGPMELYQLPELTRAGSIFVIADNKSAGDGLAGGFRWEQYDRIDYGSADHVVLFIGGETY 399

Query: 239 GLRPKTQE 246
           G+    + 
Sbjct: 400 GVSEDVRR 407


>gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 228

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                       +  E+    +  AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  FHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLTNEELELADVLTGVPMVADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVFCYQL 155


>gi|303326589|ref|ZP_07357032.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
 gi|302864505|gb|EFL87436.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
          Length = 108

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L+LG E KGLRP   +    M  + +     +LNV+
Sbjct: 50  PAVLVLGNEDKGLRPGVAKRCAHMLRIPLARPFDSLNVA 88


>gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895]
          Length = 228

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI---TQNHF 280
              +  AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y         
Sbjct: 103 QWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQL 162

Query: 281 AK 282
           AK
Sbjct: 163 AK 164


>gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 254

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ +AL+ G E  GL  +    A    ++       +LN++ A  V  Y   
Sbjct: 111 SNPVALLFGTEMSGLTNEEMGKAQLGVNIPANPDFSSLNIAAAVQVMAYELN 162


>gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 255

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E  GL     E       +   G   +LN++ A  +  Y    
Sbjct: 116 ALVFGPEETGLINSDLEQCQVTVRIPT-GDYASLNLAQAVLLVCYEFLQ 163


>gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
          Length = 173

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++LG E  GL     E    + H+       +LNV+ A  +A +  +
Sbjct: 121 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 169


>gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I]
 gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I]
 gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS]
          Length = 258

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++LG E  GL     E    + H+       +LNV+ A  +A +  +
Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822]
 gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis]
          Length = 258

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++LG E  GL     E    + H+       +LNV+ A  +A +  +
Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50]
 gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50]
          Length = 258

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++LG E  GL     E    + H+       +LNV+ A  +A +  +
Sbjct: 118 VAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|324501288|gb|ADY40576.1| Methyltransferase TARBP1 [Ascaris suum]
          Length = 1251

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  K  L+LG E +G+  +          +   G  ++LNV    A+ ++
Sbjct: 1190 MFRFPRKCVLLLGDEKEGIPVEYIRYVDHSVEIAQVGQTRSLNVHVTGALFIH 1242


>gi|300024766|ref|YP_003757377.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526587|gb|ADJ25056.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 168

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + A +LG E   L     E    +  +     I   NV+ A A+ +Y      A+
Sbjct: 101 FRHPLRAAYVLGPELGSLSEPLVERCDYVIKIPTRFCI---NVAMAGAIVMYDRVKSLAR 157


>gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 185

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 226 NDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N     + G E  GL     +E       + M   I+A N+SN+AA+ +      
Sbjct: 97  NKNYYFVFGKETTGLPETFMREYYDRNLRIPMSNHIRAYNLSNSAAMVIMEALRQ 151


>gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 169

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 64  YHDMAHVVLHPNFEDLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPM 123

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 163


>gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 223

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 118 YHDMAHVVLHPNFEDLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPM 177

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 178 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 217


>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
          Length = 572

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A S   +              + +LNVS A+A+  
Sbjct: 488 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542


>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
          Length = 572

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A S   +              + +LNVS A+A+  
Sbjct: 488 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 542


>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
 gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
          Length = 505

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A S   +              + +LNVS A+A+  
Sbjct: 421 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC 475


>gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 216

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 111 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 170

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 171 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 210


>gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
 gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
          Length = 215

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 110 YHDMAHVVLHPNFNNLVESMPDSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 169

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 170 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209


>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
 gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
          Length = 573

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A S   +              + +LNVS A+A+  
Sbjct: 489 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 543


>gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
 gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
          Length = 573

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
              L+LG EG GL+ K +  A S   +              + +LNVS A+A+  
Sbjct: 489 PCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC 543


>gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 215

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K   +        L+ G E   +    
Sbjct: 110 YHDMAHVVLHPNFDNLVESMPNSRIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPM 169

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                        L M   +++LN++N A++A+Y      
Sbjct: 170 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 209


>gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1]
 gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1]
          Length = 259

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           IAL+ G E  G      +    +  +    I   +N+S+A A+ LY  
Sbjct: 118 IALLFGREDNGFSNDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL 165


>gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 357

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 22/262 (8%)

Query: 28  RDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
              KK  + + +      ++ ++     +YG +            I ++ AT     R+ 
Sbjct: 100 PKEKKTGALSPRAPEKIKKNRAEEMK--VYGENACLELFAERPESIVRVWATVQMAHRIG 157

Query: 83  WDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMV 137
              + L     V  V       +V     H G+ +        +    LD  R    L+V
Sbjct: 158 EIFSYLATNKKVYHVVDSDELSLVSGTEHHGGICMLVKKQRIFSLQGYLDVPRQEDCLVV 217

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD VN+  N+G ++R+   +    ++T +       A +  +  G          S    
Sbjct: 218 LDQVNNAQNLGGVVRTCAFYGIKNVVTNQVEQLYAPAAMRVAEGGMEHIRILETESTEIA 277

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--- 254
                 +        ++     LEQ    +K+AL+L    +G     ++       L   
Sbjct: 278 LEALRKAGYQIIHVSTNKQGVALEQLKFAEKVALVL---SEGSTDDIRDKQDVNVRLSLS 334

Query: 255 -HMPGIIKALNVSNAAAVALYI 275
             +      LN++  A + L  
Sbjct: 335 NPLKAG---LNIAVNAGILLSH 353


>gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
 gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
          Length = 230

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +F 
Sbjct: 104 KVGIMFGRENNGLSNEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNFT 156


>gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 550

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAAAVALYI 275
               ++LG EG G+R         +  +   G            + +LNVS    V L+ 
Sbjct: 475 PPTIVVLGNEGYGVRTNVLRECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGGVVLFH 534

Query: 276 T 276
            
Sbjct: 535 L 535


>gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 267

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+ G+E  GL          +  + +    ++LN++ A A+  Y  +
Sbjct: 115 LLFGSERAGLETSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWR 161


>gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
 gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
          Length = 249

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                LI G E  GL  +       +  +       ALN+  AA V LY  +
Sbjct: 107 TTDTVLIFGREANGLTNEELSRIDEVCSIPASASYPALNLGQAATVTLYELR 158


>gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           IA + G+E  G++ +    A     +       +LN++ A  V  Y  +   +
Sbjct: 117 IAFLFGSERYGMKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQALS 169


>gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 257

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             I  ++       Q  ++ ++A++LG E  GL  +       + H+       +LNVS 
Sbjct: 97  CDIRKAAQVSCQHLQSTRHARVAIVLGTERSGLTNEDVALCQRICHIPANPEYSSLNVSQ 156

Query: 268 AAAVALYITQ 277
           A  +A +  +
Sbjct: 157 ALQLAAWELR 166


>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++AL+LG E +GL          +  +    +  ++N++ AA V LY
Sbjct: 108 RGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLY 156


>gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++AL+LG E +GL          +  +    +  ++N++ AA V LY
Sbjct: 82  RGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLY 130


>gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
 gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
          Length = 243

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|108797462|ref|YP_637659.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119866547|ref|YP_936499.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108767881|gb|ABG06603.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119692636|gb|ABL89709.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 214

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +  LI G EG G+    +  A     +   G  +++N + AA +A++
Sbjct: 149 HTDLPRECLLIFGQEGPGITEDAKTGARLTVSIAAFGSTRSINAAVAAGIAMH 201


>gi|255084469|ref|XP_002508809.1| predicted protein [Micromonas sp. RCC299]
 gi|226524086|gb|ACO70067.1| predicted protein [Micromonas sp. RCC299]
          Length = 312

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           +            S+         +              PL      D+   +LG+E  G
Sbjct: 175 SDTTKTWTNLPMYSHDNWNAFAASAPYDAAWVAVEMGGAPLATFHHPDRAVYVLGSEDNG 234

Query: 240 LRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYIT 276
           L          +  L    G   + NV+ A ++ +Y  
Sbjct: 235 LNSSVLRACAHVVELPAEVGRGASFNVAVAGSLVMYDR 272


>gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 596

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A     +              + +LNVS A+A+  
Sbjct: 503 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 557


>gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
 gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
          Length = 160

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R   A      +        +   L ++          ++  
Sbjct: 8   LHVVLYQPEIPANTGNIARLCGAAQLRLHLIHPLGFSVDDKHLKRAGLDYWP-DIDVQHH 66

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              DA         +    S  +     Q   N    L+ G E  GL  + +  A     
Sbjct: 67  ANFDAFLDGMHENARLFCFSRHASTVYPQAKVNRGDYLLFGRETLGLPLEIR-NAYPCYR 125

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           + + G +++LN+S    +  Y 
Sbjct: 126 VPIWGKVRSLNLSTTVGIVSYH 147


>gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 522

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A     +              + +LNVS A+A+  
Sbjct: 429 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483


>gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 522

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSNAAAVAL 273
              L+LG+E +GL+   ++ A     +              + +LNVS A+A+  
Sbjct: 429 PCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC 483


>gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1]
 gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus
           marisnigri JR1]
          Length = 232

 Score = 57.9 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +A++ G E  GL       A  +  +    I   LN+S+A  +  Y   N
Sbjct: 109 VAILFGRENWGLANTELARANLICTIPTSEIYPILNLSHAVGILCYELAN 158


>gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 276

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 3/173 (1%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
              P  +D       +       T   +   LD        + +++     NIG+I+R+A
Sbjct: 89  VFDPDLLDN-GDSRNIMDRYRYWTVDAIKADLDRRGRHSFEVAIENWTHDFNIGSIVRTA 147

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF+  G+     +  +    L      ++++   I         +   S     +    
Sbjct: 148 NAFTARGVHIIGPHKWNRKGSLMTELYQSVDYYASIDEFVHAVRTRDQESGQHTRLIALD 207

Query: 215 DSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                +  E         L+ GAEG GL  +  E A  + ++   G +++LN 
Sbjct: 208 IVPGAVPIESYQFPEQCILLFGAEGPGLTSRALEIADDVVYITQYGSVRSLNA 260


>gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
 gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
          Length = 278

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ++   A      +      +       L    +         +      +   +N ++A
Sbjct: 81  CDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAAHRNWQLA 140

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYI 275
           ++ G E +GL  +  + A     +        LNV+ A  V     Y 
Sbjct: 141 IVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYE 188


>gi|225469103|ref|XP_002269052.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 845

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +    + L+LG E +G+         +   +   G++++LNV  + 
Sbjct: 5   CGMVMFFTCLVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSG 54


>gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 242

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 242

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|126433083|ref|YP_001068774.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126232883|gb|ABN96283.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 214

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +  LI G EG G+    +  A     +   G  +++N + AA +A++
Sbjct: 149 HTDLPRECLLIFGQEGPGITDDAKTGARLTVSIAAFGSTRSINAAVAAGIAMH 201


>gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 147

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 6/144 (4%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G ++R+ + F    ++  +         + +++ GA+ H+      N     Q+
Sbjct: 1   MDMGNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIRASMGAIFHLNIQYYDNFESYYQE 60

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                F    L                  L+ G E  GL             +     I 
Sbjct: 61  YKYHEFYPFMLKGAKNIHQISTNNVHS--LVFGNESSGLDDTYLNYG-QSVFIPHSETID 117

Query: 262 ALNVSNAAAVALYITQN---HFAK 282
           +LN+S A  + L+          +
Sbjct: 118 SLNLSMALGLTLFHFSKEQFQRKE 141


>gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 266

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+ G E  GL         ++  + +    ++LN++ A ++  Y  +
Sbjct: 116 LLFGGERAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYEWK 162


>gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99]
 gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99]
          Length = 229

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV---ALYITQNHFA 281
            KIAL+ G E  GL     E     +++ +     +LN++ A  V   AL    N   
Sbjct: 106 KKIALLFGRESSGLSNSELELCDLFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLK 163


>gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 220

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 30/119 (25%), Gaps = 45/119 (37%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKAL-- 263
                L+  +KK   Q    D   LI G E  GL  +   + A     + M     +L  
Sbjct: 95  PHLHFLTKKAKKTYTQATYRDGDYLIFGKESLGLSEELLAKHADECERIPMLQDSVSLVN 154

Query: 264 ------------------------------------------NVSNAAAVALYITQNHF 280
                                                     NVSNAAA+ LY      
Sbjct: 155 REDWSQKHDALDGGGQYSHPVLLQQDICGNFIDPNEFSVSALNVSNAAAIVLYEALRQI 213


>gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
 gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
          Length = 517

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 8/195 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83
            +   K+++  +  S+   +     L G H +  A    +P   +      +    +L  
Sbjct: 6   QNPLVKEIRKLHA-SKGRREQGFFLLEGTHLLEEACAQKHPLATVCYTSEWQERHPQLWK 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     V+ V  + ++ I    A         A      + +V  + L + L+ V D
Sbjct: 65  KVCLQAR-RVELVSDRVLEAI----ATTVQPDGAIATAPRSEMQSVATASLGLALETVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A   DG+  +      +   + +S++GA   +P     +L   + +  
Sbjct: 120 PGNLGTIIRTAAAAGADGLWLSGDSVDLDHPKVLRSSAGAWFRLPMAVTYDLKAEISRCQ 179

Query: 204 SWGFQTIGLSSDSKK 218
             G Q     +  K 
Sbjct: 180 HQGMQNFRNFTRCKF 194


>gi|254709300|ref|ZP_05171111.1| putative SAM dependent methyltransferase [Brucella pinnipedialis
           B2/94]
 gi|256030823|ref|ZP_05444437.1| putative SAM dependent methyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|261316809|ref|ZP_05956006.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94]
 gi|261296032|gb|EEX99528.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94]
          Length = 433

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 4/87 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    +        +      
Sbjct: 348 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFDKSGKGNKTVEQVA 406

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAV 110
                    V  V  + I  I  ++  
Sbjct: 407 ARTFAKDGLVLEVTEKVISAITRRDNP 433


>gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 266

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALY 274
                K   ++G+E  G+ P       +      +   G   +LNV+ AA + ++
Sbjct: 207 FSFPPKGIAVIGSEELGVSPALLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMH 261


>gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens]
          Length = 178

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+LG E  G+         ++  +   G   ++NV+ AA   ++     
Sbjct: 126 VALVLGNEVTGVDGAVLPLVDAVVEIPTFGTKNSMNVACAATTVIFDVLRR 176


>gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + + AL+ G E  GL           A +       +LN+S A  +  Y  
Sbjct: 114 DCRGALVFGREDSGLTTDELSLCRWHATIPTSSEYGSLNLSQAVLLFCYEL 164


>gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 242

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 238

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 109 GKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIR 159


>gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 109 GKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIR 159


>gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
 gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
          Length = 244

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +AL+ G E  GL  +    A  +  +       +LN++ A  V  Y    
Sbjct: 115 VALVFGRETFGLTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELFK 164


>gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 252

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H      I  + +  + +  E K   +A++ G E  GL  +         ++        
Sbjct: 83  HRTFQLPIMNARECAETVIPEAKQHDVAIVFGRETTGLLNEEIAQCHRQVYIDANDEYPV 142

Query: 263 LNVSNAAAVALYITQ 277
           LN+S A  +  Y   
Sbjct: 143 LNISQAVQIVAYEIW 157


>gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
          Length = 237

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ- 277
               E KN  IA+++G E  GL   +      +  +       +LNV+ A  +  +  + 
Sbjct: 96  NHLIESKNHNIAIVMGNEQSGLDNNSLYNFNYIVSIPANPEYSSLNVAQALQITAWELRY 155

Query: 278 ---NHFA 281
              N   
Sbjct: 156 KYINQLN 162


>gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont]
          Length = 228

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              ++IAL+ G E  GL  +  E    +  + M     +LN+  A  V  Y  
Sbjct: 103 QWLNRIALVFGREDSGLTNEELEQVDLLTGIPMAQDYPSLNLGQAVMVYCYQL 155


>gi|167947103|ref|ZP_02534177.1| hypothetical protein Epers_11372 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   G +++LNV+ AA+V ++     
Sbjct: 25  CLSIPQFGQVESLNVAVAASVVMFEYVRQ 53


>gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 QGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|83945697|ref|ZP_00958042.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83850898|gb|EAP88758.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 173

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 3/102 (2%)

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
                   A            T     +           +D    L         A +LG
Sbjct: 43  REMFQTDTAKTTENLPYYDWETVDDMALPRGCQIVGVELTDDAVELPSFRHPRMAAYVLG 102

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E   L P+  E    +  +     +   N+S AAA+ALY  
Sbjct: 103 KERGDLSPEMLERCAHVVKIPTKFCV---NLSVAAAIALYDR 141


>gi|332299114|ref|YP_004441036.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332182217|gb|AEE17905.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 273

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS-MAHLHMPGIIKALNVSNAAAVAL 273
                +  +++G+E  G+ P+  +  T     + M G+  +LNV  A  + +
Sbjct: 212 FAFPREGIVVIGSEELGVSPEALKRGTYGRVSIPMKGLKASLNVGVAFGILM 263


>gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 185

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 226 NDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           N     + G E  GL     +E       + M   I+A N+SN+AA+ +      
Sbjct: 97  NKNYYFVFGKETTGLPETFMREYYDRNLRIPMSDHIRAYNLSNSAAMVIMEALRQ 151


>gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 231

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 1/102 (0%)

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                A  +          + L                S+        + K+ ++ G E 
Sbjct: 54  NIIDNAKVYDSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPLDYPNSAKVGIMFGREN 113

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 114 NGLSNEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRN 154


>gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           FL6-60]
          Length = 235

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 20/71 (28%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          E++      AL+ G E  GL          +  + M     +LN+
Sbjct: 85  FHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVFCYQL 155


>gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1]
          Length = 247

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
 gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  IA++ G E  G R    ++   +  +    I   +N+S+A AV LY  
Sbjct: 110 YSGTIAILFGREDTGFRNDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYEL 161


>gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661]
 gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661]
          Length = 233

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
                 AL+ G E  GL  +       +  + M     +LN+  A  V  Y       
Sbjct: 103 QWVQSAALVFGREDTGLTNEELALVDVLTGIPMAADYPSLNLGQAVMVYCYQLSALRQ 160


>gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|70914349|ref|XP_731810.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502066|emb|CAH84226.1| hypothetical protein PC300919.00.0 [Plasmodium chabaudi chabaudi]
          Length = 118

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            I  +K  LILG E +GL             +   GII++LNV  +AA
Sbjct: 71  FIFPEKCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAA 118


>gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 271

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IA++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 110 IAIVFGREDRGLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMR 158


>gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121]
 gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121]
          Length = 247

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N  IA++ G E  GL            ++        LN+S A  +  Y   
Sbjct: 106 NQPIAIVFGREKTGLLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIW 157


>gi|225022536|ref|ZP_03711728.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680279|ref|ZP_07403087.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944659|gb|EEG25868.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659810|gb|EFM49309.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 230

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 77  RRHALHIAIENFENDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLLHHDT 136

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                   A   +          S   +          +  L+ G EG G+    Q  A 
Sbjct: 137 TDSVVAWAAEHGLTVVAIDNTPGSVPLET----VELPKRCLLLFGQEGPGVTAAAQAAAV 192

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   G  +++N   AA +A++     
Sbjct: 193 MTCSIAQFGSTRSINAGVAAGIAMHAWIRQ 222


>gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
 gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
          Length = 249

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 23/73 (31%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +     S+        +  I+++ G E  GL       +  +  +        LN
Sbjct: 85  CNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNNGEVAASDLICTIPTSPEYPILN 144

Query: 265 VSNAAAVALYITQ 277
           +S+A  +  Y   
Sbjct: 145 LSHAVGLVCYELA 157


>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
 gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQN 278
             ++A++ G E  GL  +  E    +  +        +NVS+AAAV LY     + 
Sbjct: 96  KGRVAVLFGREDYGLYNEELEMCHVLVRVPTSEEYPVMNVSHAAAVILYFLREIER 151


>gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           sulfurreducens PCA]
 gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 255

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ AL+ G E  GL           A +       +LN++ A  V  Y  
Sbjct: 118 NRAALVFGREDNGLTTDELSLCRWHATIPSSEEYGSLNLAQAVMVFCYEL 167


>gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 243

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+A++ G E  GL  +         +        +LN++ A  +A Y  +
Sbjct: 108 KGKVAIVFGRERVGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVR 159


>gi|227496859|ref|ZP_03927124.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
           15434]
 gi|226833642|gb|EEH66025.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
           15434]
          Length = 225

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                ++  L+ G+EG+G+  + +   T +  +   G  +++NV
Sbjct: 161 HAQLPERCLLVFGSEGEGISEELRAGCTRLLRIGQYGSTRSINV 204


>gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 223

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 21/53 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++A++ G E  GL           + + +     +LN++ A  +  +  +  
Sbjct: 104 QRVAIVFGREASGLTGDELGLCDLASSIPLAQQQPSLNLAQAVMIYAWELRKQ 156


>gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
 gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
          Length = 220

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 25/106 (23%), Gaps = 45/106 (42%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKAL--------------- 263
             Q    D   LI G E  GL  +   + A     + M     +L               
Sbjct: 108 YTQATYRDGDYLIFGKESLGLSEELLAKYADECERIPMLQDSVSLVNREDWSQKHDALDG 167

Query: 264 -----------------------------NVSNAAAVALYITQNHF 280
                                        NVSNAAA+ LY      
Sbjct: 168 EDQYSHPVLLQQDICGNFIDPNEFSVSALNVSNAAAIVLYEALRQI 213


>gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
 gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
          Length = 247

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 170

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++       +      I+ALN+SN+AA+ +Y     
Sbjct: 102 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 152


>gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 175

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++       +      I+ALN+SN+AA+ +Y     
Sbjct: 107 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 157


>gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 249

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 170

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++       +      I+ALN+SN+AA+ +Y     
Sbjct: 102 FLFGKETTGLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQ 152


>gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
 gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
          Length = 247

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
          Length = 288

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               IA + G E  GL  +        A +       +LN+S A  +A Y  Q
Sbjct: 116 LEGSIAFVFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQ 168


>gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523]
          Length = 249

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+A++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKVAILFGRERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
 gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
          Length = 324

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A + G E  GL             +       +LN++ A  +  +  + 
Sbjct: 145 QRVAFVFGTERTGLGTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRR 196


>gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112]
 gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112]
 gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
          Length = 247

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
 gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 170

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 231 LILGAEGKGLRP-KTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
            + G E  GL     ++       +      I+ALN+SN AA+ +Y     
Sbjct: 102 FLFGKETTGLPEMFMRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQ 152


>gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic]
 gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic]
          Length = 230

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 230

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 228

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +  E A  +  + M     +LN+  A  V  Y   
Sbjct: 102 IQWMASAALVFGREDTGLTNEELELADVLTGVPMKADYPSLNLGQAVMVFCYQLA 156


>gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 237

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              N KIA + G+E  GL       A     +      K+LN+S++  +  +
Sbjct: 101 IDFNKKIAFLFGSEASGLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAH 152


>gi|76799750|ref|ZP_00781835.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 18RS21]
 gi|76584896|gb|EAO61569.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 18RS21]
          Length = 68

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 232 ILGAEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
           + G E KGL     +E A     + M    +++LNVSN   + +Y     
Sbjct: 1   MFGREDKGLPETFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQ 50


>gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515]
 gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 236

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +A++ G E +GL       A  + ++       +LN+S+A A+ LY    
Sbjct: 101 NNLAILFGREDRGLTNSELLFAHKIFNIKTSQDYPSLNLSHAVAIILYELNK 152


>gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
 gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
          Length = 255

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+ G E +GL       A  +  L       +LN+S+A A+AL+     
Sbjct: 110 VALVFGREDRGLSNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQ 160


>gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 237

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              N KIA + G+E  GL       A     +      K+LN+S++  +  +
Sbjct: 101 IDFNKKIAFLFGSEASGLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAH 152


>gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 358

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 83/262 (31%), Gaps = 22/262 (8%)

Query: 26  NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +    KK    + +      ++ ++     +YG     A        I +L AT     +
Sbjct: 99  DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGESACFALFEQRPASIVRLWATVQMAHK 156

Query: 81  LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLL 135
           +    + L     V  +        V     H G+ +        TL    D       L
Sbjct: 157 IGDICSYLAANKKVYHIVESDELTKVSGTEHHGGICMLVKKSHPFTLQGYLDVPHQEDCL 216

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD VN+  NIG ILR+   F    ++  +  S + +  L  +  GA            
Sbjct: 217 VLLDGVNNAQNIGGILRTCAFFGVKNMVVEEAESLNSAVTLRVAEGGAEYVRVLETDDTR 276

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254
               Q  H+        +  +   L++    +K   +L    +G      E +     L 
Sbjct: 277 NALAQLRHAGYQIIHVSNDKNATALDKVRLKNKTVFVL---SEGSTETLAEKSDEQVRLS 333

Query: 255 ---HMPGIIKALNVSNAAAVAL 273
               +      LNVS  A + L
Sbjct: 334 FGNPLKNG---LNVSVNAGILL 352


>gi|145350311|ref|XP_001419555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579787|gb|ABO97848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 311

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                             S              PLE          ILG+E  GL     
Sbjct: 185 WTQIPTFEYSDWDDFVRKSPVSAVWVGVEMGGTPLENFEHPRNAVYILGSEDTGLNTTML 244

Query: 246 ETATSMAHLHMPG-IIKALNVSNAAAVALYIT 276
                   L   G    + NV+   A+ +Y  
Sbjct: 245 RACQHHIALPTTGTRSPSFNVAVTGAIIMYDR 276


>gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 221

 Score = 57.2 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|326433369|gb|EGD78939.1| hypothetical protein PTSG_01913 [Salpingoeca sp. ATCC 50818]
          Length = 381

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQ----NH 279
           L++G E +G+     +  T+   +       + +LNV  AA + ++         
Sbjct: 325 LVVGNEHRGIHANVVDACTATLAVDQHRSHLVDSLNVGVAAGILIHAIALWLHRQ 379


>gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 247

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + + ++ G E +GL       A  + ++       +LN+S+A ++ LY    
Sbjct: 112 NNLGILFGREDRGLSNNELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNK 163


>gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus
           EPS]
 gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           EPS]
          Length = 247

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A + G+E  G+R +          +       +LN+  A  V  Y  +
Sbjct: 108 QHVAFLFGSERFGMRNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWR 158


>gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
 gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
          Length = 243

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +A + G+E  G+R +          +       +LN+  A  V  Y  +
Sbjct: 107 QHVAFLFGSERFGMRNEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWR 157


>gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299]
 gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299]
          Length = 506

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------------IIKALNVSNAA 269
           K  K+A++ G E  GL  +    A +   +   G                  +LN+S A 
Sbjct: 243 KRGKVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPTSLNLSQAV 302

Query: 270 AVALYIT 276
            V  Y  
Sbjct: 303 GVLAYEM 309


>gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa]
 gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa]
          Length = 230

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 102 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 265

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  K   +E   ++IA + G E  GL  +          +       +LN++ A  V  
Sbjct: 105 CEMVKTCLEENPQEEIAFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTA 164

Query: 274 YITQN 278
           Y  Q 
Sbjct: 165 YQAQQ 169


>gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 231

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++K+ ++ G E  GL  K    A  +  ++      +LN++ A  +  Y    +F 
Sbjct: 102 SEKVGIMFGRENNGLSNKEVALANKIITINTT-EFSSLNIAQAVIIICYELFRNFK 156


>gi|68491281|ref|XP_710551.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|68491304|ref|XP_710540.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|46431756|gb|EAK91286.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|46431768|gb|EAK91297.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
          Length = 1440

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 15/218 (6%)

Query: 76   NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-- 133
            +   +   +   P   P+K V    +           G         +   D    +   
Sbjct: 1222 DYDKKRKLNLKKPIVTPIKPVDSNEVSS-SSFLQTKSGAWNTIMDADAVVDDVNNTNNSV 1280

Query: 134  ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                     L++V   V+ P N+G I R         +        +       + +   
Sbjct: 1281 RGSEIPRSELIVVSSLVDKPPNLGGICRLCDVLGAGLLTLHDIEVKNHINFKTVAVTADQ 1340

Query: 185  EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241
                                    T+     + K            K  +++G E +G+ 
Sbjct: 1341 WMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIP 1400

Query: 242  PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                        +   GI++++N+  A A+ ++   + 
Sbjct: 1401 GDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1438


>gi|294899352|ref|XP_002776605.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
 gi|239883647|gb|EER08421.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
          Length = 211

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSN 267
                  S +P++          +LG EG G+  K         ++        +LNV+ 
Sbjct: 78  CGVEIHPSSEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTYIQQYTKATASLNVAI 137

Query: 268 AAAVALYITQ 277
           A ++  +   
Sbjct: 138 AGSIVSHHFA 147


>gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
 gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
          Length = 282

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L+ G E  GL  +    A  +  L +     +LN+  A AV  Y 
Sbjct: 121 ENVGLVFGRERTGLYTEEVSLADVILTLPVNPAFASLNLGMAVAVVAYE 169


>gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 464

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 19/71 (26%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP-----------------GIIK--ALNVSN 267
            K+A++ G E  GL  +    A     +                    G     +LN+S+
Sbjct: 220 GKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRGEKRYTGGAGPTSLNLSH 279

Query: 268 AAAVALYITQN 278
           A  V  Y    
Sbjct: 280 AVGVVAYELFR 290


>gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 344

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 23/87 (26%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-------------- 261
            +K  ++  +  K A++ G E  GL  +  E A     +     +               
Sbjct: 107 CEKMRDEIARGGKCAILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGA 166

Query: 262 ---------ALNVSNAAAVALYITQNH 279
                    +LN+  A  V  Y   + 
Sbjct: 167 GVDGSQTATSLNLGMAVGVVAYELFSQ 193


>gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 260

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           N +IA++ G E +GL             +        LNV++A  +  Y  +
Sbjct: 110 NTRIAVLFGREDRGLTNDELRRCNLHVSVPTNPEYGVLNVASAVQLISYELR 161


>gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 249

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + A++ G E  GL  +    A  +  + +     +LN++ A  +  Y    
Sbjct: 105 PGRHAILFGREASGLETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSR 157


>gi|238881479|gb|EEQ45117.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1443

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 15/218 (6%)

Query: 76   NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-- 133
            +   +   +   P   P+K V    +           G         +   D    +   
Sbjct: 1225 DYDKKRKLNLKKPIVTPIKPVDSNEVSS-SSFLQTKSGAWNTIMDADAVVDDVNNTNNSV 1283

Query: 134  ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                     L++V   V+ P N+G I R         +        +       + +   
Sbjct: 1284 RGSEIPRSELIVVSSLVDKPPNLGGICRLCDVLGAGLLTLHDIEVKNHINFKTVAVTADQ 1343

Query: 185  EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLR 241
                                    T+     + K            K  +++G E +G+ 
Sbjct: 1344 WMPMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIP 1403

Query: 242  PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                        +   GI++++N+  A A+ ++   + 
Sbjct: 1404 GDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1441


>gi|294659853|ref|XP_462280.2| DEHA2G17050p [Debaryomyces hansenii CBS767]
 gi|199434283|emb|CAG90782.2| DEHA2G17050p [Debaryomyces hansenii]
          Length = 1441

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  ++LG E +G+             +   G+I+++N+  A A+ ++   + 
Sbjct: 1385 FPQKSLILLGREKEGVPGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSSQ 1439


>gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
 gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
          Length = 213

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-- 242
            H     + +             + I  ++ + K            L+ G E   +    
Sbjct: 108 YHDMAHVVLHPNFEDLVESMPDSRIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPM 167

Query: 243 KTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                        L M   +++LN++N A++A+Y     
Sbjct: 168 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 206


>gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M]
 gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M]
          Length = 232

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           K+ + +G E  GL  +       +  +        LN ++A A+ LY    H
Sbjct: 108 KLGIFIGRESIGLTNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKH 159


>gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 241

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             I ++ G E  GL          +  +        LN+  AA + LY  +
Sbjct: 107 GDICVVFGRERVGLSNDELARLDVICSIPASASYPVLNLGQAATIVLYELR 157


>gi|296130802|ref|YP_003638052.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296022617|gb|ADG75853.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 219

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 49/167 (29%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + +     +  V       T   +   LD  R+   + + + V+D +    +  +    
Sbjct: 33  DRELLAHGDRRNVVDAYRYWTVEAIVADLDTRRHPFHVAIENWVHDLNIGSVVRTANAFN 92

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           S    +  +R      A++         H     ++                   +    
Sbjct: 93  SAGVHVVGRRRWNRRGAMVTDRYLHVHHHPDAAALATWAAGAGPDAGRLPVVGVDNVPGS 152

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            P+E         L+LG E  GL    Q     + H+   G  ++LN
Sbjct: 153 VPVETFAFPRACVLLLGQESTGLTEAAQAMCDVVVHITQHGSTRSLN 199


>gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 268

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 28  KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 85

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 86  SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 144

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S         
Sbjct: 145 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 204

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 205 NKQGDPLDKVRLKNKVVFVL-SESSTESLATSE--DTQVRLTLASPIKSGLNIAVNAGVL 261

Query: 273 L 273
           L
Sbjct: 262 L 262


>gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
 gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
          Length = 254

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L+ G E +GL       +  +  L+      +LN+S+A AV L+  +   
Sbjct: 124 LVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCR 173


>gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1]
 gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1]
          Length = 254

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++A++ G E  GL  +          +        LNVS A  V  Y  +   
Sbjct: 110 GRVAVLFGREDNGLTNEELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQLRQSL 163


>gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 233

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 105 SEKVGIMFGRENNGLSNEEIAFANKIITINTT-KFSSLNIAQAVIIICYELFRN 157


>gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 228

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + +AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   N
Sbjct: 104 WMNHVALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLAN 157


>gi|241954588|ref|XP_002420015.1| tRNA guanosine-2'-O-methyltransferase, putative; trna
            guanosine-2'-o-methyltransferase trm3 (ec 2.1.1.34) (trna
            [gm18 methyltransferase) (trna methylase 3) [Candida
            dubliniensis CD36]
 gi|223643356|emb|CAX42231.1| tRNA guanosine-2'-O-methyltransferase, putative [Candida dubliniensis
            CD36]
          Length = 1411

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 24/55 (43%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  +++G E +G+             +   GI++++N+  A A+ ++   + 
Sbjct: 1355 FPKKSLILIGKEREGIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1409


>gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105]
 gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105]
          Length = 269

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A + GAE  GL             +    +  +LN+S A  +  Y  +
Sbjct: 119 AFVFGAERTGLSNDELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALR 166


>gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis]
          Length = 302

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            K+AL+ G E  GL     +   +   + +  + +++++S+A +V L       A
Sbjct: 223 RKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQESMSLSHAVSVVLSRLFEQRA 277


>gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 168

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 44/155 (28%), Gaps = 5/155 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    +L+      +       +++        +     +   ++   A  A   ++H  
Sbjct: 1   MNPIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAK 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKT 244
                  +    +            +      +    +      + ++ G E  GL  + 
Sbjct: 61  IFDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNEE 120

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              AT +  ++      +LN++ A  +  Y    +
Sbjct: 121 IAFATKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           uraniireducens Rf4]
          Length = 245

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++AL+ G E  GL           + +       +LN++ A  +  Y    
Sbjct: 108 MHRVALVFGREDSGLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFK 160


>gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 174

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 6/154 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + ++L       N G I+R+  A      I            L +  +G +       I
Sbjct: 1   MINIILYQPEICPNTGNIIRTCFALGAKLHIIKPTSFDLHPKYLRRYGAGRILSDIQHEI 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQ-E 246
               D  +  +             K   EQ  K       ++ L+ G E  G+      +
Sbjct: 61  HASYDDFENKYKNKNIFYITRYGLKTYTEQNFKKAYDQSGEVWLMFGRESTGIDKNILHK 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   + M   ++++N++N   +  +      
Sbjct: 121 NINNCLRIPMVSEMRSINLANCVCIVGFEVMRQL 154


>gi|150864630|ref|XP_001383531.2| hypothetical protein PICST_82718 [Scheffersomyces stipitis CBS 6054]
 gi|149385886|gb|ABN65502.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 1408

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 224  IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                K  ++LG E +G+             +   G+I+++N+  A A+ ++     
Sbjct: 1351 QFPKKSLILLGREKEGVPGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVHAYSTQ 1406


>gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 248

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A++ G E  GL  +      ++    +     +LN++ A  V  +
Sbjct: 109 AVLFGGEKSGLPNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCH 153


>gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 269

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  L+ G E  GL          +  + +     +LN++ A A+  Y  +
Sbjct: 120 KTGLLFGGERAGLETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWR 169


>gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1]
          Length = 236

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+AL+ G E  GL  +          +         N+S+A A+ LY    
Sbjct: 109 QKVALVFGREDNGLNYEELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIK 160


>gi|328479696|gb|EGF48853.1| RNA methyltransferase, TrmH family [Lactobacillus rhamnosus MTCC
           5462]
          Length = 37

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +   +  ++ + G  ++LNV+ AAA+ ++  
Sbjct: 2   LLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 34


>gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
 gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
          Length = 238

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 20/71 (28%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                          E++      AL+ G E  GL          +  + M     +LN+
Sbjct: 85  FHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTNDELALVDLLTGVPMAADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVFCYQL 155


>gi|255721203|ref|XP_002545536.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
 gi|240136025|gb|EER35578.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
          Length = 1434

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 5/190 (2%)

Query: 95   TVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILR 152
             V P              G       + + +  +  V  S+L++V   V+ P N+G I R
Sbjct: 1243 IVTPIEPVVQSSPLQTKSGAWNTIMEVDNDSSRIAEVERSELIVVSSLVDKPPNLGGICR 1302

Query: 153  SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
                     +                + +                           T+  
Sbjct: 1303 LCDVLGAGLLTLHDIEVKKHPHFKTVAVTADHWMPMIEVKMENIRDYLLDKKREGYTLIG 1362

Query: 213  SSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               + K            K  +++G E +G+             +   GI++++N+  A 
Sbjct: 1363 LEQTDKSVELNNDLKFPKKSLILIGKEREGIPGDLLAELDFCVEIKQVGIVRSMNIQTAT 1422

Query: 270  AVALYITQNH 279
            A+ ++   + 
Sbjct: 1423 AIIVHAYSSQ 1432


>gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 126

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + G E  GL  +   +A  +  +      ++LN+S+A +V  Y
Sbjct: 1   MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAY 43


>gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 358

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 85/259 (32%), Gaps = 16/259 (6%)

Query: 26  NHRDYKKMQSFNQK-----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +    KK    + +      ++ ++     +YG +   A        I +L AT     +
Sbjct: 99  DKPREKKTGPLSPRAPEKIKKNRAEEMK--VYGENACLALFQQRPGSIVRLWATVQMAHK 156

Query: 81  LDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLL 135
           +    + L     V  +        V     H G+ +        T    LD       L
Sbjct: 157 IGDICSYLATNKKVYHIVDNDEMIKVSGTEHHGGICMLVKKAHPFTLQGYLDVPHQEDCL 216

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+VN+  NIG ILR+   F    I+     S + +  L  +  GA            
Sbjct: 217 VLLDNVNNAQNIGGILRTCAFFGVKNIVVENAESLNSAVTLRVAEGGAEYVRVLETNDTR 276

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   +        S ++   L++    +K   +L +E         E +     L 
Sbjct: 277 NALSQLRQAGYQILHVSSDENATALDKVQLKNKTVFVL-SEST--TKALSEKSDEQVRLA 333

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               +K  LNVS  A + L
Sbjct: 334 FASPVKNGLNVSVNAGILL 352


>gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator]
          Length = 436

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNA 268
                     +    ++ LI+G E +G+        ++      ++ +   I++LN ++A
Sbjct: 357 QFPIVPYHTLDFAKKEVVLIIGGETEGISLQSCDLLRDRNCIRVNISLTNGIESLNTASA 416

Query: 269 AAVALYITQNHFA 281
            +V  +  +  F 
Sbjct: 417 LSVITFEIRRQFI 429



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 4/176 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y  L  N +    +    +  +   +   + L G   +  A+                  
Sbjct: 100 YKPLDENDKFISSLMINIRTKKRREKNGQILLEGSRLIQDAIQAGVMPQIIFF----NRL 155

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                 +LP    +  +P +TI              +   P +     A     L ++ D
Sbjct: 156 ADVLQLSLPKEVQLYKIPYRTIQLWSTLTTSPGIFGIFDIPDVENNTPANDAIPLTIICD 215

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ +P N+G+I+R+A A  C+ ++  K         + + A GA   +   R  + 
Sbjct: 216 NIREPGNLGSIIRTAAAVGCEKLLLMKGCVDIWEPKVLRGAVGAHFRVSIHRSLSW 271


>gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct]
          Length = 282

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 137 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 190


>gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 248

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++A++ G E  GL        + +  +       +LN++ A  V LY 
Sbjct: 109 GRVAILFGPEDTGLTNDETSVCSGLMTIPTSREGTSLNLAQAVVVVLYE 157


>gi|224005541|ref|XP_002291731.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972250|gb|EED90582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 416

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254
             +  +  +       +      PL+  +       ILG+E  G+          +  L 
Sbjct: 319 WTSFAEWAAPRSAVWVVIEMGGTPLKDFVHPRNAIYILGSEDHGVPKSVVRACREVVSLE 378

Query: 255 -HMPGIIKALNVSNAAAVALYIT 276
             M G   + NV+ A ++ +Y  
Sbjct: 379 CEMYG---SYNVAVAGSIVMYDR 398


>gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z]
 gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum
           labreanum Z]
          Length = 248

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +   S ++     E  + +I+++ G E  GL  +       +  +        +N+
Sbjct: 86  NPMRMPYYSVAELREMIEGIDGRISILFGRENWGLNNEEIAKCDIVCTIPTSDEYPIMNI 145

Query: 266 SNAAAVALYITQN-HFAK 282
           S+A  +  Y   +    +
Sbjct: 146 SHAIGIVCYELAHLQRGE 163


>gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
 gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
          Length = 270

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  + G E  GL  +    A  +  L +     +LN++ A  V  Y  + 
Sbjct: 122 QHGVGYLFGRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRK 174


>gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 247

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164


>gi|163787679|ref|ZP_02182126.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium
           ALC-1]
 gi|159877567|gb|EDP71624.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium
           ALC-1]
          Length = 152

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 9/156 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D + N    + + +   P N+G + RSA       I T       ++         A++ 
Sbjct: 3   DNLTNEFFGIGIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQACDTH----NAVKS 58

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY       D    +           +   + LE      +   +LGAE  GL     +
Sbjct: 59  MPYFHYETFEDFFNNLPKGARLVGVELNKDAEDLETFHHPRRCVYLLGAEDHGLSKIAID 118

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  +          +LNVS A ++ +Y       K
Sbjct: 119 KSHFLVK---FKSQLSLNVSVAGSIVMYD--RGINK 149


>gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +AL+ G E  GL  +      ++  L +     +LN++   AV  Y 
Sbjct: 121 EDVALVFGRERTGLYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYE 169


>gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 201

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEG 237
           +       +I+GAEG
Sbjct: 187 QDLTGPTIIIMGAEG 201


>gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
 gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
          Length = 247

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164


>gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 251

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               ++ L+ G E  GL  +     +   ++       + N+S+A  +  Y
Sbjct: 109 FYGGRLGLVFGNERTGLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159


>gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 247

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164


>gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 247

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL  +    +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQ 164


>gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 251

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               ++ L+ G E  GL  +     +   ++       + N+S+A  +  Y
Sbjct: 109 FYGGRLGLVFGNERTGLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159


>gi|255716658|ref|XP_002554610.1| KLTH0F09350p [Lachancea thermotolerans]
 gi|238935993|emb|CAR24173.1| KLTH0F09350p [Lachancea thermotolerans]
          Length = 1396

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 54/204 (26%), Gaps = 8/204 (3%)

Query: 76   NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
                +  W      P     V  Q    +        G       + + +         L
Sbjct: 1191 GQDQKHLWLKKRTRPKQEAEVSLQKDSPL----QTKSGAWETVMDIDNQSSAVTVKRSPL 1246

Query: 136  MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            +V+  + D       +         G++T               A  A   +P   ++  
Sbjct: 1247 IVIASLVDKAPNLGGICRLCDVLGAGLLTVHDIRIKNHPQFKSVAVTADRWMPMEAVTTQ 1306

Query: 196  TDALQKMHSWGFQTI----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                                 +  S +   +     K  ++LG E +G+           
Sbjct: 1307 DITKFMRSKKQEGYTLIGLEQTDKSIQLDNKFQFPPKSLILLGTESEGIPGHLLSELDLC 1366

Query: 252  AHLHMPGIIKALNVSNAAAVALYI 275
              +   G+I+++N+  A AV ++ 
Sbjct: 1367 LEIKQSGVIRSMNIQTATAVIVHA 1390


>gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 267

 Score = 56.0 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A++LG E  GL  +       + H+       +LNV+ A  +A +  +
Sbjct: 115 DGCVAIVLGTERSGLTNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 170

 Score = 56.0 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 4/154 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R+         +        +   L ++     + +    
Sbjct: 1   MTNHIVLFEPLMPANTGNIARTCAGTDTVLDLIEPLGFSIDDKHLKRAGLDYWDKVQINY 60

Query: 192 ISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETA 248
             NL + L+ + +          ++      +    +    L+ G E  GL     ++  
Sbjct: 61  HQNLPEFLKSVKNPQNLFLVSKFANQDYTDPDYSDPSQDYYLLFGKETTGLPEPFMRQNP 120

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
                +      I+ALN+SN  A+ +Y       
Sbjct: 121 EKAIRIPQDDDNIRALNLSNTCAIVIYEVLRQQN 154


>gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 445

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAA 269
           K  K+A++ G E  GL       A +   +   G  K               +LN+S+A 
Sbjct: 206 KRGKVAVLFGNERTGLTNDELSWAHAAVAIPTAGAGKICRKSLKYTGGTGPTSLNLSHAV 265

Query: 270 AVALYIT 276
            +  Y  
Sbjct: 266 GILAYEI 272


>gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius]
          Length = 329

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 6/177 (3%)

Query: 2   NLISKKKSEKIFSLKD----SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV 57
           N      SE     KD      + +     +   ++ S  +          + + G   +
Sbjct: 105 NYSPSTTSEHTTYPKDQLGGLKFERALPGDKRLARVVSVARSRTFREHQGKILIEGRRLI 164

Query: 58  SAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
             AL   +       ++ + L+ L  D         VK    +    +V  + V    + 
Sbjct: 165 CDALAAGANPQMVFFSSLDRLSELPLDKLKRATLVKVKFEDIKIWSDVVAPQGVIAIFSR 224

Query: 117 ETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                L+   D    S  L ++ D+V DP N+G ILR AVA  C  I+ TK      
Sbjct: 225 PDPSQLTFPPDQRSQSLPLSLICDNVRDPGNLGTILRCAVAAGCHNILLTKGCVDVW 281


>gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435]
          Length = 1457

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  ++LG E +G+             +   G+I+++N+  A AV ++     
Sbjct: 1401 FPKKSLIVLGMEKEGIPSSILAELDFCVEIKQVGVIRSMNIQTATAVIVHAYAIQ 1455


>gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 346

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 17/260 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   A        I +L AT     +L
Sbjct: 82  NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACLALFKQRPDAIVRLWATIEGAKKL 141

Query: 82  DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLL 135
                    H      V    ++++ G E  H  + L     +  +L+      R    L
Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEQHHGDVCLLVKKAVPFSLEGYLQVPRKRDCL 201

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD VN+  N+G I+R+   +    +I     + + SA    +  G     P       
Sbjct: 202 VLLDAVNNAQNVGGIIRTCAFYGVSRVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQ 261

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
               Q  ++         +     L +     K   +L +E   +  +  E    +   L
Sbjct: 262 IALTQLRNAGYQVVHLTRNKQAASLAKTKLAAKTVFVL-SE---IPAQGVEYPEDTTVQL 317

Query: 255 HMPGIIKA-LNVSNAAAVAL 273
                + + LNV+ +A + L
Sbjct: 318 SFENPLNSGLNVAVSAGIVL 337


>gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 265

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD +  P+NIGA+ R+A +F    II  +  +        ++A G       
Sbjct: 115 EIRPFTVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARG--CTETV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                  +++  +       +         +       +  +++G E  G+ P       
Sbjct: 173 DWSMMDEESVIDLIHRRKVPVFALETGGVNIAGFPFPPEGIMVVGNEEFGVSPALLRACQ 232

Query: 250 S---MAHLHMPGIIKALNVSNAAAVALYI 275
                  L   G   +LNVS A  + ++ 
Sbjct: 233 ESAGRLSLLQAGTKASLNVSVAFGIVMHA 261


>gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix
           DSM 17093]
          Length = 248

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            + +A++ G E  GL     +       +       +LN++ A  +  Y 
Sbjct: 110 PEGLAVLFGPEDFGLSNDDLKHCQGYIRIPTAAYA-SLNLAQAVQLVAYE 158


>gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 231

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           K+ ++ G E  GL  +    A  +  ++      +LN++ A  +  Y    +
Sbjct: 104 KVGIMFGRENNGLSNEEISLANKIITINTT-EFSSLNIAQAVIIVCYELFRN 154


>gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
 gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
          Length = 245

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               ALI G E  GL+      A             +LN++ A  +  Y 
Sbjct: 101 QGPAALIFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYH 150


>gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 267

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               ALI G E  GL+      A             +LN++ A  +  Y 
Sbjct: 123 QGPAALIFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYH 172


>gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 151

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                      +           +   LS+ ++K   +    D +  + G E  GL    
Sbjct: 52  YWQHLDLKIYDSITHFFEVHSDKKFAFLSAKAEKNYYEIDYEDNMFFVFGKESVGLPASV 111

Query: 245 QE-TATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278
            E    S+  + +    I++LN++NA ++ +Y    
Sbjct: 112 VEKHKNSLYKIPLFSEHIRSLNLANAVSIVIYDAIK 147


>gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio
           bacteriovorus HD100]
          Length = 261

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN----HFAK 282
           L+ G E  GL  +  E A   A +   G   +LN++ A  + +Y  +        K
Sbjct: 122 LVFGPEDWGLAGEDLEHANFCACIPTFGDNWSLNLAQATLLGMYSLRRTWGGQRTK 177


>gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 351

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A        I +L AT     ++         H      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAEHKKAYHVVD 168

Query: 98  PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + + ++ G      +   +       L   LD  RN   L++LD+VN+  NIG +LR+ 
Sbjct: 169 SEELARVSGTEHHGGICLLVKKPRVFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTC 228

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+     +   +A +  +  G+            +  +    S         +
Sbjct: 229 AYFGVKNIVADNVENLYSAASMRVAEGGSEYIRVLETDDIDSALMHLRKSGYQVMHVSHN 288

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
               PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345


>gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  ++LG E +G+             +   G+I+++N+  A AV ++     
Sbjct: 1353 FPKKTLMLLGREKEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407


>gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 225  KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               K  ++LG E +G+             +   G+I+++N+  A AV ++     
Sbjct: 1353 FPKKTLMLLGREKEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407


>gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227]
          Length = 228

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   N
Sbjct: 104 WMNHAALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLAN 157


>gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 248

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A + G E  GL       A ++  + +     +LN++ A  +  Y    H
Sbjct: 108 PGRSAYVFGPERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH 161


>gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866]
          Length = 351

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S         
Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATSE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|260772015|ref|ZP_05880932.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260612882|gb|EEX38084.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 39

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M    ++LN+SNA A+  +      
Sbjct: 2   NQRIRIPMMPNARSLNLSNAVAIIAFEAWRQL 33


>gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 15/278 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
             +  K+  +  S  A  +   +    +     +    ++ E + +YG +   A      
Sbjct: 81  SGEEGKVKVVVKSTGASDKPREKKTGALSPRAPEKIKKNRAEEMKVYGENACQALFAQRP 140

Query: 66  RKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             I ++ AT     +    +            V    +  +V   A H G+ +       
Sbjct: 141 ESIVRIWATVEMAKKSGELFSYLAEQKKAYHVVDSAELA-LVSGTAHHGGICMLVKKARP 199

Query: 124 PT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            T    LD  R    L+++D V +PHN+G ++R+   F   G++  +  + + +A  A  
Sbjct: 200 FTLAGYLDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMR 259

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEG 237
            +        +  +                +   + +K+     +    +K+  +L  E 
Sbjct: 260 VAEGGMEYVRVLETTDVPKALAQLRQAGYQLIHVTANKQAKPLSKLHFTEKVVFVL-NE- 317

Query: 238 KGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273
           +G      +       L +      + LN++ A  + L
Sbjct: 318 QG-DASLAQAEDEQVVLSLGNPLKAE-LNIAVATGILL 353


>gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 258

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ ++ G E  GL     E    +  +   G   +LN+S A  +  Y   
Sbjct: 118 RVGILFGTERTGLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELM 167


>gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 282

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A++ G E +GL  +    A     + +      LNV+ A  V  Y  +
Sbjct: 122 VAILFGREDRGLTNEELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMR 170


>gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021]
 gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21]
          Length = 351

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + + ++ G E             A  L   LD  RN   L++LD+VN+  NIG +LR+ 
Sbjct: 169 SEELARVSGTEHHAGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTC 228

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+     +    A +  +  GA            +  +    S         +
Sbjct: 229 AYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDYIDSALMHLRKSGYQVIHVSHN 288

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
               PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345


>gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 175

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                    +VL     P N G I R+         +        ++  L ++       
Sbjct: 1   MMEEKMANHIVLFEPLMPANTGNIARTCAGTDTILDLIEPLGFKLDNKHLKRAGLDYWNK 60

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRP-K 243
           +      NL + L+ + +     +     ++   + +  + K    L+ G E  GL    
Sbjct: 61  VQINYHQNLPEFLKTVENPKNLFLVSKFANQDYTDPDYSDPKQDYYLLFGKETTGLPEPF 120

Query: 244 TQETATSMAHLHMPGI-IKALNVSNAAAVALYITQNH 279
            ++       +      I+ALN+SN+ A+ +Y     
Sbjct: 121 MRKNPEKAIRIPQDDDHIRALNLSNSCAIVIYEVLRQ 157


>gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
 gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
          Length = 270

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + G E  GL  +    +  +  L +     +LN++ A  V  Y  + 
Sbjct: 125 TGYLFGRERWGLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRK 174


>gi|296453420|ref|YP_003660563.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182851|gb|ADG99732.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 282

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 216 PMETYTFPKRCLLLFGAEGPGLSEKALELADDVVYISQFGSVRSIN 261


>gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846]
          Length = 351

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A        I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD       L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S         
Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568]
 gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 228

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                       +  E+     + AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  FHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVYCYQL 155


>gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047]
 gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047]
 gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 351

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 11/240 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A        I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGDVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + + ++ G      +   +      +L   LD       L++LD+VN+  NIG +LR+ 
Sbjct: 169 SEELARVSGTEHHGGICLLVKKPRVFMLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRTC 228

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+     +    A +  +  GA            +  +    S         +
Sbjct: 229 AYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHN 288

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
               PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 289 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 345


>gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 228

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156


>gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 228

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156


>gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 225

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                   +  ++  E+     + AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  FHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVYCYQL 155


>gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 218

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct]
          Length = 218

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 218

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638]
 gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 228

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +       E+     K AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  FHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEELELADVLTGVPMVADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVYCYQL 155


>gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 228

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + IAL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMNHIALVFGREDSGLTNEELALADILTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 160

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 2/136 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N GA+ R+ VA   + ++            L ++     +HI      + 
Sbjct: 8   IVLVNPEIAGNTGAVGRTCVALDMELVLIHPLGFTITDTRLKRAGLDYWQHIRLAEFRSW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
               ++      Q       + +   Q    +   L+ G E KGL P+  E     M  L
Sbjct: 68  EAFFEERSPRADQLFLFEEYAPRDFYQPEYPEDAYLVFGRETKGLPPEIVEAHRAQMVSL 127

Query: 255 HM-PGIIKALNVSNAA 269
            M    +++LN++N  
Sbjct: 128 PMKSDKVRSLNLANTV 143


>gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 245

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++AL+ G E  GL           A +       +LN+S A  +  Y    
Sbjct: 110 RMALVFGREDSGLTTDEVALCRWQATIETADEFGSLNLSQAVLIFCYEFLK 160


>gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
          Length = 371

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 11/240 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A        I +L AT     ++         +      V 
Sbjct: 131 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 188

Query: 98  PQTIDKIVG---KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + + ++ G      +   +       L   LD       L++LD+VN+  NIG +LR+ 
Sbjct: 189 SEELARVSGTEHHGGICLLVKKPRVFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRTC 248

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+     +   +A +  +  GA            +  +    S         +
Sbjct: 249 AYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSHN 308

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
               PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 309 KQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 365


>gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
 gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
          Length = 253

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             K+AL+ G E  GL     + A  +  +        LN++ A  +  Y  
Sbjct: 119 RGKVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYEL 169


>gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 350

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A + G E  GL  +    A  +  + +     +LN++ A  +  Y     
Sbjct: 217 TGRSAYVFGPERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 270


>gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
 gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 28/87 (32%)

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
              +     +   + +          +   +  +  ++A++LG E  GL   +       
Sbjct: 69  CHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSDSLRLCDQH 128

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
            ++        LNV+ AA V  Y    
Sbjct: 129 CYISANPDYPVLNVAQAAQVLTYELYQ 155


>gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549]
          Length = 247

 Score = 55.2 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++KIA++ G E  GL       +   A++       +LN++ A  +  Y     
Sbjct: 111 DEKIAILFGRERTGLLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08]
          Length = 245

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           ND I ++ G E  GL        T    +       +LN+S+A  V  Y   +   K
Sbjct: 108 NDSIGVVFGGEASGLTNDHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFK 164


>gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1]
 gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1]
          Length = 351

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +   +A +  +  GA            +  +Q   S         
Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703]
 gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 232

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y  
Sbjct: 103 QWVKSVALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 332

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 15/270 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           KI     S+  K ++        ++  +  ++ ++     +YG ++  A        I +
Sbjct: 62  KIQVKGSSNLQKEKKTGPL--SPRAPEKIKKNRAEEMK--VYGENSCLAVFQQRPESIVR 117

Query: 71  LLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L AT     +L         H      V  + ++K+ G E  H  + L        +L+ 
Sbjct: 118 LWATVEGAKKLGDMLSYLAEHKKAYHVVSREEMEKVTGTE-HHGDVCLLIKKAPVFSLEG 176

Query: 129 V----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R    L++LD+VN+  N+G I+R+   +   GIIT      + SA    +  G  
Sbjct: 177 YLQIARARDCLVLLDNVNNAQNVGGIIRTCAFYGVKGIITESNDRLNSSAAARVAEGGLE 236

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                          Q  ++               L +    +K+  +L +E   +  + 
Sbjct: 237 FVHALETKHKQIALQQLRNAGYQIIHLTRQKQAPTLTKIALAEKVVFVL-SEI--VSNEI 293

Query: 245 QETATSMAHLH-MPGIIKALNVSNAAAVAL 273
           + +      L     +  +LNV+  A + L
Sbjct: 294 EFSEDITVQLSVTNPLSSSLNVAVNAGILL 323


>gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 260

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +A++ G E  GL            ++        LN+S A  +  Y   
Sbjct: 106 DHNVAIVFGRETTGLLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIW 157


>gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +  +    E+       AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  YHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNL 144

Query: 266 SNAAAVALYITQ 277
             A  V  Y   
Sbjct: 145 GQAVMVYCYQLA 156


>gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 351

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S       L 
Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVLH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 261

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +IA++ G E +GL             +        LNV++A  +  Y  +
Sbjct: 112 RIAVLFGREDRGLTNDELRRCNLHVSVPANPEYGVLNVASAVQLISYELR 161


>gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
 gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                       +  E+    ++ AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  FHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEELELADLLTGVPMQADYPSLNL 144

Query: 266 SNAAAVALYIT 276
             A  V  Y  
Sbjct: 145 GQAVMVYCYQL 155


>gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large
           ribosomal RNA ribose methylase, putative; ribose
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
          Length = 440

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
            + LI+G+EG G+R   +  +  +  +        I+ +LN   A  V L
Sbjct: 386 PVMLIIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435



 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 8   KSEKIFSLKDSHYAKL-RRNHRDYKKMQSFNQKSRHTSQPEN-------------LFLYG 53
           +  +  ++K +H   L  + + + ++ ++  ++++      +              +++G
Sbjct: 90  RQRRFRAMKIAHEKSLQEKANEERERARALAREAKGFKTSNSNYDTVVDRNDTIFDYVFG 149

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            H V A L    R++  L    N    +   A   +    K +  +    I+ K  VH G
Sbjct: 150 THPVKAVLAAGKRRMLDLYTFNNDDPDIVELAVEKYGITPKRLKDKNALNILCKNGVHNG 209


>gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Achromobacter xylosoxidans A8]
          Length = 263

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++LG E  GL          + H+       +LNV+ A  +A +  +
Sbjct: 119 AVVLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
 gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
          Length = 252

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++LG E  GL          + H+       +LNV+ A  +A +  +
Sbjct: 108 AVVLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELR 155


>gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 262

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156


>gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLA 156


>gi|289425727|ref|ZP_06427482.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|289427937|ref|ZP_06429641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295131542|ref|YP_003582205.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|289153833|gb|EFD02539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|289158820|gb|EFD07020.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291376685|gb|ADE00540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 226

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V       T   +   LDA R+  L + + +     NIG+++R+A AF+   +   
Sbjct: 50  DRRNVIDRYRYWTMEAIVADLDAQRSP-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 108

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   +    +       + H   +           +   G   +  S   +        
Sbjct: 109 GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 164

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 165 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 203


>gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMVADYPSLNLGQSVMVYCYQLA 156


>gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +    A  +  + M     +LN+  +  V  Y   
Sbjct: 102 AQWMTHAALVFGREDSGLSNEELALADVLTGVPMVADYPSLNLGQSVMVYCYQLA 156


>gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 228

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMEHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE]
 gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE]
          Length = 234

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   A        I +L AT     ++         +      V  + + ++ G E
Sbjct: 3   VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62

Query: 109 AVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+   F    I+ 
Sbjct: 63  -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
               +   +A +  +  GA            +  +Q   S         +    PL++  
Sbjct: 122 DNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMQLRKSGYQVIHVSHNKQGDPLDKVR 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
             +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 182 LKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 228


>gi|291455964|ref|ZP_06595354.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
 gi|291382373|gb|EFE89891.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
          Length = 312

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 246 PMETYAFPKRCLLLFGAEGPGLSSKALELADDVVYISQFGSVRSIN 291


>gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031]
 gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 351

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S         
Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGNPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 311

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               + D +A + G+E  G++ +          +       +LN+  A  +  Y  +
Sbjct: 154 HPAQRPDSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWR 210


>gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021]
          Length = 351

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +   +A +  +  GA            +  +    S         
Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 228

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +  +    E+       AL+ G E  GL  +  E A  +  + M     +LN+
Sbjct: 85  YHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNL 144

Query: 266 SNAAAVALYITQ 277
             A  V  Y   
Sbjct: 145 GQAVMVYCYQLA 156


>gi|170584264|ref|XP_001896925.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
 gi|158595702|gb|EDP34233.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
          Length = 1402

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K+ L+LG E +G+             +   G  ++LNV    A+ +Y
Sbjct: 749 HKIRFPSKMVLLLGNEKEGIPMHLLGYLDKTVEVLQIGHTRSLNVHVTGALLIY 802


>gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 233

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A++ G E  GL       A ++  + +     +LN++ A  +  Y    H
Sbjct: 100 PGQCAIVFGPERSGLETDDVALARTIITVPINPEFASLNLAQAVILCAYEWSKH 153


>gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 357

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A + G E  GL       A  +  + +     +LN++ A  +  Y     
Sbjct: 224 TGRSAFVFGPERSGLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQ 277


>gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++LG E  GL          + H+       +LNV+ A  +A +  +
Sbjct: 119 AIVLGTERAGLTNAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
          Length = 196

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                      ++  E++    + AL+ G E  GL  +    A  +  + M     +LN+
Sbjct: 52  FHYYCTPPELLEQLSERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNL 111

Query: 266 SNAAAVALYITQ 277
             A  V  Y   
Sbjct: 112 GQAVMVYCYQLA 123


>gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
 gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
          Length = 238

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL  +       +  +        LN+  AA VALY  +
Sbjct: 109 VALVFGRERVGLMNEELARLDQICAIPASADYPVLNLGQAATVALYELR 157


>gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
          Length = 351

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A     +  I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD       L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +    A +  +  GA            +  +    S         
Sbjct: 228 CAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   +   L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 206

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 82  WMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 134


>gi|165975661|ref|YP_001651254.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307249419|ref|ZP_07531410.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|165875762|gb|ABY68810.1| conserved putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306858561|gb|EFM90626.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 345

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   A        I +L AT     +L
Sbjct: 82  NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141

Query: 82  DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
                    H      V    ++++ G E                L   L   R    L+
Sbjct: 142 GDILSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +  +G+I     + + SA    +  G     P        
Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQI 261

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
              Q  ++         +    PL +     K   +L +E   +  +  E    +   L 
Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+ +  + L
Sbjct: 318 FENPLNSGLNVAVSTGILL 336


>gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 286

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              I  + G+E  G+R +          +       +LN+  A  V  Y  +
Sbjct: 134 QQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEWR 185


>gi|313836409|gb|EFS74123.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314928873|gb|EFS92704.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314971249|gb|EFT15347.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
          Length = 164

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 100 AQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 141


>gi|328906380|gb|EGG26155.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 196

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 5/159 (3%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V       T   +   LD  R+  L + + +     NIG+++R+A AF+   +   
Sbjct: 20  DRRNVIDRYRYWTMEAIVADLDTQRSR-LHVAIQNWEHDFNIGSVVRTANAFNVSAVHIL 78

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   ++   +       + H P +           +   G   +  S   +        
Sbjct: 79  GRRRWNKRGAMVTDRYLHVYHHPDVPSFLQWLDEHGVTPVGVDNLSGSVPLET----AQL 134

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 135 PQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 173


>gi|314988238|gb|EFT32329.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990324|gb|EFT34415.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
          Length = 164

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + + +     NIG+++R+A AF+   +    R   +    +       + H P +  
Sbjct: 14  PLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRRRWNRRGAMVTDRYLHVYHHPDVPS 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                    +   G   +  S   +             L+ G+EG GL  +  +    + 
Sbjct: 74  FLHWLDEHGVTPVGVDNLPGSVPLET----VQLPQDCCLVFGSEGPGLTDEVVKGCEQLV 129

Query: 253 HLHMPGIIKALN 264
            +   G  +++N
Sbjct: 130 AITQYGSTRSMN 141


>gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + A + G E  GL  +    A  +  + +     +LN++ A  +  Y     
Sbjct: 219 GRSAYVFGPERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 271


>gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAAA 270
             K+A++ G E  GL  +   TA +   +   G                  +LN+S A  
Sbjct: 224 RGKVAVLFGNERTGLTNEELGTAHAAVAIPTAGQGSLCRKSLKYTGGTGPTSLNLSQAVG 283

Query: 271 VALYIT 276
           V  Y  
Sbjct: 284 VIAYEM 289


>gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
 gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
          Length = 243

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL  +    A ++  + +     +LN++  A +  Y  +  
Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQ 161


>gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 289

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + G E  GL       A  +  L +     +LN++ A  V  Y  + 
Sbjct: 125 TGYLFGRERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRK 174


>gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
 gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
          Length = 262

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               I    ++   +  EI   K+A++ G E  GL  +    A     +        LNV
Sbjct: 104 HPWPIKEVREAAAHINDEIPQGKVAIMFGPERMGLNNEELRLAQFHMDIPGNPDYPVLNV 163

Query: 266 SNAAAVALYIT-QNHFAK 282
           + A  V  Y       ++
Sbjct: 164 AQAVQVVCYELFMAQRSQ 181


>gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica]
 gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica]
          Length = 1383

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   K  ++LG E +G+             +   G+I+++N+  AAAV ++     
Sbjct: 1324 FVFPKKSLILLGMEREGIPGNLLAELDYAVEIKQIGMIRSMNIQTAAAVIVHAYSMQ 1380


>gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
 gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
          Length = 264

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  ++ G E  GL  +    A ++    +     +LN++ A  +  Y 
Sbjct: 129 RTGILFGPERAGLDNEDMARADTLVRYPLNPKFMSLNLAQAVLIMAYE 176


>gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH]
          Length = 234

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 11/230 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   A     +  I +L AT     ++         +      V  + + ++ G E
Sbjct: 3   VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62

Query: 109 AVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+   F    I+ 
Sbjct: 63  -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
               +   +A +  +  GA            +  +    S         +    PL++  
Sbjct: 122 DNVENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHNKQGDPLDKVR 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
             +K+  +L +E       T E   +   L +   IK+ LN++  A V L
Sbjct: 182 LKNKVVFVL-SESSTESLATPE--DTQVRLTLASPIKSGLNIAVNAGVLL 228


>gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 275

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A + G E  G+       +     +       +LN+  A  V  Y     
Sbjct: 143 VAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAAIQVVAYE-WRQ 192


>gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591]
 gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 233

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 103 QWVKSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 251

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + + A+I G E  GL       A ++  + +     +LN++ A  +  Y    H
Sbjct: 111 SGRSAIIFGPERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH 164


>gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304]
          Length = 261

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272]
          Length = 261

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6]
          Length = 261

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70]
          Length = 261

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9]
 gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9]
          Length = 235

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163


>gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68]
          Length = 268

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC
           9905]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
          Length = 206

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
 gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
 gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
 gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
 gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86]
 gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W]
 gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
          Length = 235

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163


>gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354]
 gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606]
 gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str.
           493-89]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026]
 gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026]
 gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
 gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1]
 gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88]
 gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
 gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1]
 gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88]
 gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           LF82]
 gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146]
 gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252]
 gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89]
 gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           UTI89]
 gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 235

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163


>gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197]
 gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
 gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046]
 gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B]
 gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736]
 gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G]
 gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli
           CFT073]
          Length = 235

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 111 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 163


>gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC1212]
 gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1125]
 gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1044]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39]
 gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952]
 gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
 gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39]
 gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952]
 gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           3431]
 gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a]
 gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972]
 gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073]
 gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a]
 gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972]
 gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           WV_060327]
 gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A]
 gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS]
 gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           EC4100B]
 gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14]
 gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180]
 gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989]
 gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9]
 gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989]
 gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010]
 gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357]
 gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227]
 gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94]
 gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           CDC 74-1112]
 gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC
           796-83]
 gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301]
 gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1]
 gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1]
 gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri
           2a str. 2457T]
 gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671]
 gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71]
 gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella
           flexneri 2930-71]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
 gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
          Length = 473

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    AL+ G E  GL                +    +  ++N+S+A AV L    +  
Sbjct: 275 HRPHATALVFGREESGLSEAELRLCRCPGHACAIPTGRLQPSMNLSHAVAVVLGEIFSRR 334


>gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 258

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 122 RTGLLFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171


>gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
 gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
          Length = 256

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               + G E  GL       A  +  L +     +LN++ A  V  Y  + 
Sbjct: 119 PSGYLFGRERWGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRR 169


>gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 711

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 575 RTGLLFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 624


>gi|313771681|gb|EFS37647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313810504|gb|EFS48218.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313818066|gb|EFS55780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313820925|gb|EFS58639.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313827061|gb|EFS64775.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|313831545|gb|EFS69259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313832531|gb|EFS70245.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|313839272|gb|EFS76986.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314926952|gb|EFS90783.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314961772|gb|EFT05873.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314964756|gb|EFT08856.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|314974896|gb|EFT18991.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314979684|gb|EFT23778.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314984577|gb|EFT28669.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315082261|gb|EFT54237.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|327326511|gb|EGE68299.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327332778|gb|EGE74510.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327335170|gb|EGE76880.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327448399|gb|EGE95053.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327448473|gb|EGE95127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328757294|gb|EGF70910.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|328762053|gb|EGF75558.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 164

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141


>gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 256

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+ L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171


>gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 203

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 79  WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131


>gi|313793789|gb|EFS41820.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313803102|gb|EFS44310.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313808316|gb|EFS46787.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313824005|gb|EFS61719.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|314978011|gb|EFT22105.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|315079276|gb|EFT51279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315083769|gb|EFT55745.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
 gi|315087409|gb|EFT59385.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089826|gb|EFT61802.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|315095489|gb|EFT67465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327449669|gb|EGE96323.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|327456121|gb|EGF02776.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|332676410|gb|AEE73226.1| rRNA methylase SpoU family [Propionibacterium acnes 266]
          Length = 196

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V       T   +   LDA R+  L + + +     NIG+++R+A AF+   +   
Sbjct: 20  DRRNVIDRYRYWTMEAIVADLDAQRSP-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 78

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   +    +       + H   +           +   G   +  S   +        
Sbjct: 79  GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 134

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 135 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 173


>gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 234

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 234

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
          Length = 203

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 79  WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131


>gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 203

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 79  WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 131


>gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 228

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|261330743|emb|CBH13728.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 373

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
           LILG+E KGLR    E +       + +P   +++LNVS A ++ ++  +
Sbjct: 297 LILGSEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFR 346


>gi|72393371|ref|XP_847486.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359584|gb|AAX80017.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803516|gb|AAZ13420.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 373

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPG-IIKALNVSNAAAVALYITQ 277
           LILG+E KGLR    E +       + +P   +++LNVS A ++ ++  +
Sbjct: 297 LILGSEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFR 346


>gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 243

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + + A++ G E  GL  +    A ++  + +     +LN++ A  +  Y    H
Sbjct: 105 MAQADGRSAILFGPERSGLETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKH 162


>gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 250

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K+AL+ G E  GL  +     T    L       +LN++ A  +  Y  +
Sbjct: 114 QGKVALLFGPERTGLDNEHLALCTHRVWLDANPNYPSLNLAQALMICAYTLR 165


>gi|163784272|ref|ZP_02179189.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880461|gb|EDP74048.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 98

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + E   ++G + V  A+ +       L+A  + + +            ++ VP + ++++
Sbjct: 2   ENEKFVIWGRNPVVEAIKSGRSLEKILIAHDSHIPKQIIKLAEEKKIKIQKVPRKKVEEL 61

Query: 105 VGKEAVHQGLALETAPLLSPT 125
            G +    G+    +P+    
Sbjct: 62  AGTKKTQ-GIVALVSPISYWD 81


>gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 266

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +A + G E  G+             +       +LN+ +A  V  Y  +
Sbjct: 128 ACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 182


>gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 267

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +A + G E  G+             +       +LN+ +A  V  Y  +
Sbjct: 129 ACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 183


>gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 266

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +A + G E  G+             +       +LN+ +A  V  Y  +
Sbjct: 128 VCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWR 182


>gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666]
          Length = 268

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            D +A + G+E  G++            +       +LN+  A  +  Y     
Sbjct: 117 PDSVAFLFGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYD-WRQ 169


>gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
 gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
          Length = 255

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  IA++ G E  G      ++   +  +    I   +N+S+A ++ LY  
Sbjct: 110 YSGTIAVLFGREDNGFNNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYEL 161


>gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 228

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL  +  E A  +  + M     +LN+  A  V  Y   
Sbjct: 102 VQWMASAALVFGREDVGLTNEELELADVLTGVPMKADYPSLNLGQAVMVYCYQLA 156


>gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 266

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+ L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171


>gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 225

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +AL+ G E  GL  +        +++ + G   +LN+  A  V  Y  
Sbjct: 105 MALVFGRESSGLSNQELSQCDLFSYVPLAGDYPSLNLGQAVMVYTYAL 152


>gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
 gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
          Length = 249

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL       A ++  + +     +LN++    +  Y  +  
Sbjct: 112 EKVAVLFGPERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQ 164


>gi|23465003|ref|NP_695606.1| hypothetical protein BL0405 [Bifidobacterium longum NCC2705]
 gi|189440070|ref|YP_001955151.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|239622608|ref|ZP_04665639.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133408|ref|YP_004000747.1| spou3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690420|ref|YP_004219990.1| hypothetical protein BLLJ_0228 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325605|gb|AAN24242.1| narrowly conserved hypothetical protein with possible methylase
           domain [Bifidobacterium longum NCC2705]
 gi|189428505|gb|ACD98653.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|239514605|gb|EEQ54472.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311772635|gb|ADQ02123.1| SpoU3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455276|dbj|BAJ65898.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 282

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K    A  + ++   G ++++N
Sbjct: 216 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 261


>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
 gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040]
          Length = 249

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL       A ++  + +     +LN++    +  Y  +  
Sbjct: 112 EKVAVLFGPERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQ 164


>gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
          Length = 256

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+ L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 122 KVGLMFGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWW 171


>gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 161

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V F+    +            + ++     +H+     
Sbjct: 1   MLNIVLFQPEIPENTGNISRTCVGFNATLHMIRPFGFILNDKRMKRAGLDYWDHLKRKEY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE------IKNDKIALILGAEGKGLRPKTQE 246
            + +D   +        + L +                K+++I  + G E KGL  +  E
Sbjct: 61  DDWSDFESQNLVNKNSKVFLITKFADKSISNLTKDELTKDEEIFFVFGRETKGLTSEIME 120

Query: 247 -TATSMAHLHMPGIIKALNVSNAAAVALYI 275
                   + M   I++ N+SN+ A+  + 
Sbjct: 121 KYKKFQLKIEMNSNIRSFNLSNSVAIVAFH 150


>gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 237

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                KIA + G+E  GL       A     +      K+LN+S++  + 
Sbjct: 101 IDFTKKIAFLFGSEASGLSNNEVSYANYTLQIPTNPDFKSLNLSHSLIII 150


>gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
 gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
          Length = 283

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + G+E  G+  +          +       +LN+  A  V  Y     
Sbjct: 153 FLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAYE-WRQ 200


>gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4]
 gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4]
          Length = 172

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 92  FTHPENAVYIFGPEDGSLPQEVVDKADHVVYIPTNG---CMNLAATVNVVLYDR 142


>gi|227545717|ref|ZP_03975766.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|317482756|ref|ZP_07941768.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688400|ref|YP_004208134.1| hypothetical protein BLIF_0209 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|227213833|gb|EEI81672.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|316915791|gb|EFV37201.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320459736|dbj|BAJ70356.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 282

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K    A  + ++   G ++++N
Sbjct: 216 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 261


>gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
 gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
          Length = 266

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E  GL     E   +   +       +LN++ A  +  Y    
Sbjct: 120 ALVFGPEETGLLNADLEQCQATVRIPTADYA-SLNLAQAVLLVTYEFLQ 167


>gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 233

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +       E++      AL+ G E  GL  +    A  +  + M     +LN+
Sbjct: 85  FHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNL 144

Query: 266 SNAAAVALYITQ 277
             A  V  Y   
Sbjct: 145 GQAVMVYCYQLA 156


>gi|313763818|gb|EFS35182.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|314924475|gb|EFS88306.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314932367|gb|EFS96198.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314956676|gb|EFT00928.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314959587|gb|EFT03689.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314967313|gb|EFT11412.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|314981716|gb|EFT25809.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315092480|gb|EFT64456.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
 gi|315094724|gb|EFT66700.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315100138|gb|EFT72114.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315102460|gb|EFT74436.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315102886|gb|EFT74862.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|315107804|gb|EFT79780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|327328572|gb|EGE70332.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
 gi|327455784|gb|EGF02439.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457929|gb|EGF04584.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328757099|gb|EGF70715.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328757477|gb|EGF71093.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 164

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141


>gi|50843459|ref|YP_056686.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
           KPA171202]
 gi|282854793|ref|ZP_06264127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|50841061|gb|AAT83728.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
           KPA171202]
 gi|282581939|gb|EFB87322.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|313813862|gb|EFS51576.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313817019|gb|EFS54733.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829825|gb|EFS67539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|314916587|gb|EFS80418.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314968739|gb|EFT12837.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
 gi|315109623|gb|EFT81599.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
          Length = 196

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 5/159 (3%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V       T   +   LDA R+  L + + +     NIG+++R+A AF+   +   
Sbjct: 20  DRRNVIDRYRYWTMEAIVADLDAQRSR-LHVAIQNWEHDFNIGSVVRTANAFNVAAVHIL 78

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R   +    +       + H   +           +   G   +  S   +        
Sbjct: 79  GRRRWNRRGAMVTDRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLET----VQL 134

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 135 PQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 173


>gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
 gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
          Length = 253

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 96  EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 147


>gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
 gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
          Length = 276

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
 gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
          Length = 276

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
          Length = 302

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 140 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 191


>gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 281

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|217979899|ref|YP_002364046.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
 gi|217505275|gb|ACK52684.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
          Length = 169

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 46/136 (33%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L + L   + P N G ILR          I      P       ++    L+H+ 
Sbjct: 4   FEPVDLTVALYQPDIPQNAGTILRMCACLGLRAAIIEPAGFPVSDRHFRRAGMDYLDHVA 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R  +         + G + + LS+ +  P           L+LG E  G   +   +A
Sbjct: 64  IERHVSFAAFDAARRAEGARLVLLSTKAALPYADFAFRAGDILLLGRESAGAPDEVHRSA 123

Query: 249 TSMAHLHMPGIIKALN 264
            +   + +   +++LN
Sbjct: 124 DARIIIPLADGMRSLN 139


>gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 218

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAE  G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEDSGMRQRTKAIVNPRV 216


>gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 247

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 ++ ++ GAE  GL       + ++  L +     +LN++ A  V  +  +
Sbjct: 105 HVEAGQRVGVLFGAEKSGLPNAAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR 160


>gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1]
          Length = 470

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
           K   + LI+G+EG G+R   +  +  +  +        I+ +LN   A  V L
Sbjct: 413 KKTPVMLIIGSEGSGVRTNMKIRSDYLVGIPKIRRNDNIVDSLNAGVATGVIL 465



 Score = 40.2 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54
           KI   K       +   R  +  +      ++     +                 +++G 
Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGNGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           H V A L    R+I  L    N    +   A   +    K +  +    I+ K  VH G
Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKNGVHNG 219


>gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804]
 gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii]
          Length = 255

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++LG E  GL          + H+       +LNV+ A  +A +  +
Sbjct: 119 AVVLGTERAGLTNAQIALCQRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 228

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 228

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
           RHODOBACTER Sphaeroides
          Length = 249

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL  +    A ++  + +     +LN++    +  Y  +  
Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 243

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL  +    A ++  + +     +LN++    +  Y  +  
Sbjct: 109 RRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++ +    Q   + + S+       ++ K+A+I G E  GL  +  +    +  +     
Sbjct: 85  RQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGLTNEELDLCQILMTIPGNSH 144

Query: 260 IKALNVSNAAAVALY 274
             +LNV++A  V  Y
Sbjct: 145 YFSLNVASAIQVFAY 159


>gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 239

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                   L +G E  GL  +    A ++  + + G   +LNV+N
Sbjct: 180 YTFPSSGCLAVGNEEYGLSDEVLSQADAVVEIPLYGKKNSLNVAN 224


>gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
          Length = 334

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG ++  A        I +L AT     +L         H      V 
Sbjct: 91  KKNRAEEMR--VYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVS 148

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRS 153
            + ++K+ G E  H  + L        +L+      R    L++LD+VN+  N+G ++R+
Sbjct: 149 REEMEKVTGTE-HHGDVCLLVKKSPVFSLEGYLQITRARDCLVLLDNVNNAQNVGGVIRT 207

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              +   GIIT      + SA    +  G                 Q  ++         
Sbjct: 208 CAFYGVKGIITESSDRLNSSAAARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTR 267

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVA 272
                 L +    +K+  +L +E   +  + + +      L +      +LNV+  A + 
Sbjct: 268 QKQVPTLTKIALAEKVVFVL-SEI--VSNEIEFSEDVTVQLSVANPLSSSLNVAVNAGIL 324

Query: 273 L 273
           L
Sbjct: 325 L 325


>gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T]
          Length = 228

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVKVYCYQLA 156


>gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 279

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ A++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 122 ERCAVMFGPERTGLSNDDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQ 173


>gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 237

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A++ G E  GL          ++ +       +LN++ AA V LY  + 
Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRK 157


>gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A++ G E  GL          ++ +       +LN++ AA V LY  + 
Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRK 157


>gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
 gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
          Length = 239

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +A++ G E  GL  +  +      ++        LN+S A  +  +    
Sbjct: 109 VAIVFGRERMGLSNEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFK 158


>gi|303281969|ref|XP_003060276.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457747|gb|EEH55045.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 492

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 2/110 (1%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
                +++     H       +         S     +        PL+      +   +
Sbjct: 345 YKHKYEASDTTQSHKQLPLHKHDDWGDFAKSSPHGAVLVAIEMGGTPLQDFAHPPRAVYV 404

Query: 233 LGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQ-NHF 280
           LG+E  GL     E       L    G   + NV+ A  + +Y       
Sbjct: 405 LGSEDNGLNRPIVEACQCHVALPKWFGRSASYNVAMAGTLVMYDRMIKQL 454


>gi|255085818|ref|XP_002505340.1| predicted protein [Micromonas sp. RCC299]
 gi|226520609|gb|ACO66598.1| predicted protein [Micromonas sp. RCC299]
          Length = 525

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 2/108 (1%)

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              +++     +                +S              PL+  +   +   +LG
Sbjct: 402 FKYEASDTTQAYKQLPLFKYDEWGDFAKNSPHGAVWVAIEMGGVPLQDFVHPPRAVYVLG 461

Query: 235 AEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYIT-QNHF 280
           +E  GL     E       L    G   + NV+ A  + +Y   Q   
Sbjct: 462 SEDNGLNRPIVEACQCHVALPKWIGRSASYNVAMAGTLVMYDRMQKQL 509


>gi|314918941|gb|EFS82772.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920962|gb|EFS84793.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
          Length = 164

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 100 VQLPQDCCLVFGSEGPGLTDEVVKGCEQLVAITQYGSTRSMN 141


>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 467

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 25/239 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I    ++++ +                    +  +  R   +     + G   V+  
Sbjct: 1   MVYIESAHNDRVRAW-------------------ARLKTRRGRERTGLFLVEGERLVAEL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN+P R    L    +         +         + PQ    +   E            
Sbjct: 42  LNSPLRLEALLWNVASDEPPEALWQHPKADGRRYELSPQAFAAVADTETPQG-----LMA 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           + S      ++   ++VLD + DP N+G ++RSA AF    I+     +   +  + +++
Sbjct: 97  VASIPQTEPQHGDRVLVLDAIQDPGNVGTLVRSAEAFGFGEIVFGTGTADPYAPKVVRAS 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGK 238
            G L  +  I                   +  ++   +    E     ++A+++G EG 
Sbjct: 157 MGGLFRVNAIAGDAEAYLRAWRDRHPDGLVVATAADARERCDEAPMAGEVAMVIGNEGP 215


>gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032]
 gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter
           turicensis z3032]
          Length = 239

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y  
Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 166


>gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
 gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
          Length = 233

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 103 QWVSSAALVFGREDSGLTNEELALADILTGVPMAADYPSLNLGQAVMVYCYQLA 156


>gi|310288141|ref|YP_003939400.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17]
 gi|309252078|gb|ADO53826.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17]
          Length = 294

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277


>gi|311065013|ref|YP_003971739.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310867333|gb|ADP36702.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 294

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277


>gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 277

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + G+E  G+  +          +       +LN+  A  V  Y  +
Sbjct: 147 FLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAIQVIAYEWR 193


>gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
 gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
          Length = 245

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++ L+ G E  GL       A ++    +     +LN++ A  +  Y  + 
Sbjct: 108 ERVGLMFGRERVGLSNDEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRR 159


>gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 277

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 16/47 (34%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + G+E  G+  +          +       +LN+  A  V  Y  +
Sbjct: 147 FLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAIQVIAYEWR 193


>gi|224283598|ref|ZP_03646920.1| hypothetical protein BbifN4_07177 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140749|ref|ZP_07802942.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133259|gb|EFR50876.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 294

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 232 PMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277


>gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18]
          Length = 245

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++AL+ G E  GL           + +       +LN+S A  +  Y    
Sbjct: 110 RLALVFGREDSGLTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK 160


>gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21]
 gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21]
          Length = 245

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++AL+ G E  GL           + +       +LN+S A  +  Y    
Sbjct: 110 RLALVFGREDSGLTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLK 160


>gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 154

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                AL+ G E  GL       A  +  + M     +LN+  A  V  Y
Sbjct: 104 WMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCY 153


>gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1]
 gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 241

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G E  GL          +  +        +N+  +A VALY  +
Sbjct: 110 PTALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELR 159


>gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1]
 gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 253

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             AL+ G E  GL          +  +        +N+  +A VALY  +
Sbjct: 122 PTALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELR 171


>gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
 gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
          Length = 245

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++ L+ G E  GL       A ++    +     +LN++ A  +  Y  + 
Sbjct: 108 ERVGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159


>gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 430

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  ++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 276 ERCGILFGRERNGLETGEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMR 327


>gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20]
 gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424
 gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW]
          Length = 351

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 13/241 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP 97
            ++ ++     +YG +   A        I +L AT     ++         +      V 
Sbjct: 111 KKNRAEEMK--VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVD 168

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + ++ G E  H G+ L      + T    LD  RN   L++LD+VN+  NIG +LR+
Sbjct: 169 SEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRT 227

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    I+     +   +A +  +  GA            +  +Q   S         
Sbjct: 228 CAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLEADYIDSALMQLRKSGYQIIHVSH 287

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVA 272
           +    PL++    +K+  +L +E       T E   + A L +   IK+ LN++  A V 
Sbjct: 288 NKQGDPLDKVRLKNKVVFVL-SESSTESLATPE--DTQARLTLASPIKSGLNIAVNAGVL 344

Query: 273 L 273
           L
Sbjct: 345 L 345


>gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118]
          Length = 286

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + G E  G+R +          +       +LN+  A  V  Y  +
Sbjct: 145 FLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAVQVIAYEWR 191


>gi|323456726|gb|EGB12592.1| hypothetical protein AURANDRAFT_6321 [Aureococcus anophagefferens]
          Length = 173

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVAL 273
               + G EG+GL P        + ++        +LNV+ A AV L
Sbjct: 104 PACFMPGNEGEGLLPNQIALCDRLVYVPQFAPATASLNVNAATAVVL 150


>gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
          Length = 245

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++I L+ G E  GL       A ++    +     +LN++ A  +  Y  + 
Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159


>gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
 gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
          Length = 245

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++I L+ G E  GL       A ++    +     +LN++ A  +  Y  + 
Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159


>gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           extorquens PA1]
          Length = 245

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++I L+ G E  GL       A ++    +     +LN++ A  +  Y  + 
Sbjct: 108 ERIGLMFGRERVGLSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRR 159


>gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489]
          Length = 228

 Score = 53.3 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLANEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 294

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQVI 185


>gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae]
 gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 482

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 285 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 344

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
           +G I R         +        +       + +                     +K  
Sbjct: 345 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKEKKKE 404

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 405 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 464

Query: 264 NVSNAAAVALY 274
           N+  A AV ++
Sbjct: 465 NIQTATAVIVH 475


>gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 293

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             IA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 138 PNIAILFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAVQVI 183


>gi|297627066|ref|YP_003688829.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922831|emb|CBL57409.1| TRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 258

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G+EG+GL  +       +  +   G  +++N
Sbjct: 174 LPLRCCLVFGSEGQGLTDELAAACERLVAITQYGSTRSMN 213


>gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 258

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  L+ G E  GL  +    A ++    +     +LN++ A  +  Y   
Sbjct: 122 RTGLLFGPERAGLDNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWW 171


>gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL  +    A+++  + +     +LN++    +  Y  +  
Sbjct: 109 RRVGILFGPERTGLENEDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 238

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +A++ G+E  GL  +  +T   +  +       +LN++ A  +
Sbjct: 110 VAIVFGSERSGLSNQDIQTCDLVTTIPQITPQPSLNLAQAVMI 152


>gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp.
           PRwf-1]
          Length = 286

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           K+A++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 134 KVAILFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVI 178


>gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
 gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
          Length = 248

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++ ++ G E  GL       A ++    +     +LN++ +  +  Y  + 
Sbjct: 113 ERVGILFGRERVGLSNDEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRR 164


>gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
 gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
          Length = 254

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E  GL     E       +       +LN++ A  +  Y    
Sbjct: 106 ALVFGPEETGLVNSDLEQCQVTVRVPTAEYA-SLNLAQAVLLVCYEFLQ 153


>gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 209

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP--------Q 99
            +YG+H V + +     K   +    NA  +++   +        V  +          +
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                    AV        +      L     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 228

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  AL+ G E  GL     E A  +  + M     +LN+  A  V  Y   
Sbjct: 102 VQWMASAALVFGREDVGLTNDELELADVLTGVPMKADYPSLNLGQAVMVYCYQLA 156


>gi|190149477|ref|YP_001968002.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262796|ref|ZP_07544423.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914608|gb|ACE60860.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871941|gb|EFN03658.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 345

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   A        I +L AT     +L
Sbjct: 82  NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141

Query: 82  DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
                    H      V    ++++ G E                L   L   R    L+
Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +  +G+I     + + SA    +  G     P    +   
Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKNKQI 261

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
              Q  ++         +    PL +     K   +L +E   +  +  E    +   L 
Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+ +  + L
Sbjct: 318 FENPLNSGLNVAVSTGILL 336


>gi|32034434|ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207693|ref|YP_001052918.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|303250729|ref|ZP_07336925.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252028|ref|ZP_07338199.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245018|ref|ZP_07527115.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247192|ref|ZP_07529243.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307251737|ref|ZP_07533641.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253971|ref|ZP_07535823.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256232|ref|ZP_07538019.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307258426|ref|ZP_07540167.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|126096485|gb|ABN73313.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302649458|gb|EFL79643.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650399|gb|EFL80559.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854183|gb|EFM86391.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856330|gb|EFM88482.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306860823|gb|EFM92832.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306863175|gb|EFM95117.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865413|gb|EFM97309.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306867610|gb|EFM99457.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 345

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   A        I +L AT     +L
Sbjct: 82  NNTMKEKKTGPLSPRAPEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKL 141

Query: 82  DWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
                    H      V    ++++ G E                L   L   R    L+
Sbjct: 142 GDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 201

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +  +G+I     + + SA    +  G     P    +   
Sbjct: 202 LLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVRPLETKNKQI 261

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
              Q  ++         +    PL +     K   +L +E   +  +  E    +   L 
Sbjct: 262 ALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLS 317

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+ +  + L
Sbjct: 318 FENPLNSGLNVAVSTGILL 336


>gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
 gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
          Length = 248

 Score = 52.9 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +     +LN+     +  Y  +  
Sbjct: 112 EKVAVLFGPERAGLENEDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQ 164


>gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
 gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
          Length = 260

 Score = 52.9 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +     +LN+     +  Y  Q  
Sbjct: 112 EKVAVLFGPERAGLENEDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQ 164


>gi|254707157|ref|ZP_05168985.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
          M163/99/10]
          Length = 98

 Score = 52.9 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
          +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35 NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87 L 87
           
Sbjct: 94 A 94


>gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 275

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +I G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 123 IIFGRERTGLTNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMK 170


>gi|213691175|ref|YP_002321761.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522636|gb|ACJ51383.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457233|dbj|BAJ67854.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 282

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K+   A  + ++   G ++++N
Sbjct: 216 PMEAYTFPKRCLLLFGAEGPGLSDKSLALADDVVYISQFGSVRSIN 261


>gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 277

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata]
          Length = 1420

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   K  ++LG E  G+             +   G+I+++N+  A AV ++
Sbjct: 1360 NNFKFPSKSLILLGTEAHGIPGHLLNELDLCLEIKQHGVIRSMNIQTATAVIVH 1413


>gi|240963045|ref|XP_002400660.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215490727|gb|EEC00370.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 113

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI--IKALNVSNAAA 270
           P      +    LI+G E +G+  +      S+  +        I +LNVS A  
Sbjct: 34  PWVLPPPDKPAILIVGNENQGMHRELGAVCDSVLSISPAASSDLIGSLNVSVATG 88


>gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus
           273-4]
 gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter
           arcticus 273-4]
          Length = 298

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             IA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 142 PNIAILFGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAVQVI 187


>gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +    +       +   +    + +  + G E   +R +      S   L   G   +LN
Sbjct: 264 YRHPCLHALDGGARKRSRCTLPNLVVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLN 320

Query: 265 VSNAAAVALYIT 276
           ++ A  V LY  
Sbjct: 321 LAAAVNVVLYDR 332


>gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +    +       +   +    + +  + G E   +R +      S   L   G   +LN
Sbjct: 264 YRHPCLHALDGGARKRSRCTLPNLVVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLN 320

Query: 265 VSNAAAVALYIT 276
           ++ A  V LY  
Sbjct: 321 LAAAVNVVLYDR 332


>gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 228

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +K AL+ G E  GL  +  E A  +    M     +LN+  A  V  Y   
Sbjct: 104 WLEKAALVFGREDSGLTNEELELADVLTGAPMVADYPSLNLGQAVMVYCYQLA 156


>gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 228

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     +LN   A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNXGQAVXVYCYQLA 156


>gi|152968115|ref|YP_001363899.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151362632|gb|ABS05635.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 212

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                +  L+ G EG GL  +       +  +   G  ++LNV 
Sbjct: 148 YDLPRECVLLFGQEGPGLSEEAVAACVDVLAIAQFGSTRSLNVG 191


>gi|23335642|ref|ZP_00120876.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
          Length = 231

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           P+E      +  L+ GAEG GL  K    A  + ++   G ++++N
Sbjct: 165 PMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSIN 210


>gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
 gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
          Length = 280

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +     +LN+     +  Y  +  
Sbjct: 144 EKVAVMFGPERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQ 196


>gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
          Length = 232

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +     +LN+     +  Y  +  
Sbjct: 96  EKVAVMFGPERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQ 148


>gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 226

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +A++ G E  GL  +       +  + +     +LN+  A  + LY 
Sbjct: 109 VAVVFGCEESGLSNEDLALVDLLTTIPLVNPYPSLNLGQA--IMLYA 153


>gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi
           DSS-3]
          Length = 248

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL       A ++  + +     +LN+     +  Y     
Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQ 164


>gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 228

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 AL+ G E  GL       A  +  + M     +LN+  A  V  Y  
Sbjct: 103 QWLQHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155


>gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 226

 Score = 52.9 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-----TQNH 279
           AL+ G E +GL  +       +    M     +LN+S A  V LY          
Sbjct: 109 ALVFGREDRGLANEELALCDLLTGFPMAVSYPSLNLSQA--VMLYAWELSGLARQ 161


>gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 52.9 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  GL  +  +  + + ++       +LN++ A  V  Y    
Sbjct: 117 PEDAGLSNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYEIFK 160


>gi|254583948|ref|XP_002497542.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
 gi|238940435|emb|CAR28609.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
          Length = 1434

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  K  ++LG E  G+             +   G+I+++N+  A AV ++
Sbjct: 1375 HYKFPAKSLVVLGTEAHGIPGHLLSELDLCLEIRQFGVIRSMNIQTATAVIVH 1427


>gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894]
          Length = 228

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            AL+ G E  GL       A  +  + M     +LN+  A  V  Y  
Sbjct: 108 TALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155


>gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 257

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  ++ G E  GL       A S+    +     +LN++ A  V  Y   
Sbjct: 122 KCGILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWW 171


>gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
 gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
          Length = 257

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  ++ G E  GL       A S+    +     +LN++ A  V  Y   
Sbjct: 122 KCGILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWW 171


>gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33]
          Length = 276

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 232

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 6/224 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L G   + AA+   +  + QL+    A+ R               V  + +  I      
Sbjct: 2   LEGARFLRAAVAAGAH-VEQLVGVDEAIRREADLVASARSVV--VVTQRELAAISATTTP 58

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                +     ++  ++A+ +  +++ LD V DP N+G ++R+A A S D +        
Sbjct: 59  Q--GLVGVLRRVTVPVEALEDRLVVLALDGVQDPGNVGTLVRTAAALS-DAVGVLVGPGS 115

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           ++      + + A                            +  D + P     +  +  
Sbjct: 116 ADPFNPKAARAAAGALERVPIAEVDELTPALRELRVRGARVIGLDPRAPSPLAPETQRRV 175

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L++GAEG GL           A L +P  +++LN + A A+AL+
Sbjct: 176 LVVGAEGAGLSAAVDGELDERAALVVPPRLESLNAAVAGALALW 219


>gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC
           25840]
 gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 291

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 134 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 185


>gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M]
 gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M]
 gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330]
 gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           family, group 1 [Brucella melitensis biovar Abortus
           2308]
 gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC
           23365]
 gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC
           23445]
 gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           ATCC 23457]
 gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           M5-90]
          Length = 276

 Score = 52.5 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERFGLSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 228

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 18/54 (33%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 AL+ G E  GL       A  +  + M     +LN+  A  V  Y   
Sbjct: 103 QWLTHAALVFGREDSGLTNDELALADVLTGVPMVADYPSLNLGQAVMVYCYQLA 156


>gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp.
           BNC1]
          Length = 262

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  ++ G E  GL  +    A  +    +     +LNV+ A  +  Y    
Sbjct: 119 QRTGILFGRERWGLTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLK 170


>gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
 gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
          Length = 248

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K+A++ G E  GL  +    A ++  + +     +LN+     +  Y  +  
Sbjct: 112 QKVAVMFGPERAGLENEDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQ 164


>gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 261

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  L+ G E  GL          +  + +     +LN++ A A+  Y  +
Sbjct: 112 KTGLLFGGERAGLETGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWR 161


>gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++ +    Q   + + +K      I + ++A+I G E  GL  K  +    +  +     
Sbjct: 89  RQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLTNKELDLCQILMTIPGNPD 148

Query: 260 IKALNVSNAAAVALY 274
             +LNV++A  V  Y
Sbjct: 149 YFSLNVASAIQVFAY 163


>gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 280

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 ERTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|312067485|ref|XP_003136765.1| hypothetical protein LOAG_01177 [Loa loa]
 gi|307768079|gb|EFO27313.1| hypothetical protein LOAG_01177 [Loa loa]
          Length = 612

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K+ L+LG E  G+             +   G  ++LNV    A+ +Y
Sbjct: 548 HKIRLPSKMVLLLGNEKGGIPMDLLGYLDKTVEVVQIGHTRSLNVHVTGALFIY 601


>gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
 gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
          Length = 302

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  G+       A ++  + +     +LN++    +  Y  Q  
Sbjct: 165 EKVAVMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQ 217


>gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c]
 gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName:
            Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA
            methylase 3
 gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c]
          Length = 1436

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%)

Query: 88   PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                  ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 1239 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298

Query: 147  IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
            +G I R         +        +       + +                     +K  
Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKEKKKE 1358

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 1359 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418

Query: 264  NVSNAAAVALY 274
            N+  A AV ++
Sbjct: 1419 NIQTATAVIVH 1429


>gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 158

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R  V   C   +        ++  L ++     EH+P    
Sbjct: 1   MLNVVLFEPRIPQNTGNIGRLCVLTGCRLHLIEPLGFSLDARHLRRAGLDYWEHLPLRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA-TS 250
             L + L+ ++       G+++ +++P  Q   +   + +I G E  G+           
Sbjct: 61  GTLAEFLEYVNFQKGTLCGITTKARRPYTQIPVDGGPLFVIFGREDTGMTEALHGACGEK 120

Query: 251 MAHLHMPGII--KALNVSNAAAVALYITQNH 279
              L M      +++N+S++ AV +Y     
Sbjct: 121 RYRLPMRECSSCRSMNLSSSVAVVVYDILRR 151


>gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 257

 Score = 52.1 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A+I G E  G+       A ++  + +     +LN++    +  Y  + 
Sbjct: 124 EKVAVIFGPERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRR 175


>gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
 gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
          Length = 255

 Score = 52.1 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++A++ G E  GL  +    A ++  + +     +LN++    +  Y     
Sbjct: 116 QRVAVLFGPERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQ 168


>gi|50955804|ref|YP_063092.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50952286|gb|AAT89987.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 218

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 5/169 (2%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + +      V           +   LD  R     + +++     NIG+I+RSA 
Sbjct: 35  VFDPELLRTGDTRNVIDRYRYWRMEAIVADLDQ-RRHPFHVAIENWQHDMNIGSIVRSAN 93

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF+ D +    R   ++   +       L H   +           +       +  S  
Sbjct: 94  AFAADTVHIVGRRRWNKRGAMVTDRYQHLRHHDNVDSFVAWARADGLPIVAVDNVPGSVR 153

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +          +  L+ G EG GL       A ++  +   G  +++N
Sbjct: 154 IET----TGLPRECVLLFGQEGPGLSEPAIAAADTVVEISQFGSTRSIN 198


>gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVA 272
            + L++G+EG G+R   Q  +  +  L       GI+ +LNVS A A+ 
Sbjct: 339 PVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACALM 387



 Score = 39.8 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +           P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQ 99
           N         +      +  V  Q
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQ 151


>gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVA 272
            + L++G+EG G+R   Q  +  +  L       GI+ +LNVS A A+ 
Sbjct: 339 PVLLVMGSEGAGVRTHLQLRSDYLVGLSKGREDEGIVDSLNVSVACALM 387



 Score = 39.8 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +           P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQ 99
           N         +      +  V  Q
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQ 151


>gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021]
 gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
 gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
          Length = 276

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  + +K+ +I G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 113 HRFKEGEKVGIIFGRERTGLTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLK 170


>gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 1436

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%)

Query: 88   PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                  ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 1239 KRDTNTESVNSSNISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298

Query: 147  IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
            +G I R         +        +       + +                     +K  
Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418

Query: 264  NVSNAAAVALY 274
            N+  A AV ++
Sbjct: 1419 NIQTATAVIVH 1429


>gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 286

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GL+ +    A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGREKSGLKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a]
 gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118]
          Length = 1436

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%)

Query: 88   PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                  ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 1239 KRDTNTESVNSSNISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298

Query: 147  IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
            +G I R         +        +       + +                     +K  
Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418

Query: 264  NVSNAAAVALY 274
            N+  A AV ++
Sbjct: 1419 NIQTATAVIVH 1429


>gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
 gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 171

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 5/142 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L +V D    P N G  +R          +        +   + ++     E     
Sbjct: 11  NPPLHVVFDRPEIPPNTGNAIRMCAGTGASLHLAGPLAFKFDDKHVRRAGLDYHELADVH 70

Query: 191 RISNLTD---ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
               + +    +        +    ++ +     +        L+ G E  GL  +    
Sbjct: 71  VHEGIDEALAHVTDPARGSGRVFAFTAQTGTWFTEVDYQPGDVLLFGPEPTGLADEVLAD 130

Query: 247 -TATSMAHLHMPGIIKALNVSN 267
              T+   + M    +++N+SN
Sbjct: 131 PRVTAKVRIPMLPGRRSMNLSN 152


>gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 154

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++        N G  +R   A  C+  +            L ++      H      
Sbjct: 1   MFRVMFFSPRIAPNTGNAIRMVAATGCELHLVHPLGFDLSEPKLRRAGLDY--HDLASVT 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +             +    ++ +  P           L+ G E  GL  +T      T 
Sbjct: 59  VHDDLPSAWQALMPARVYVFTAHASTPFTDIAYRPGDVLMFGPEPTGLDEQTLADPHITE 118

Query: 251 MAHLHMPGIIKALNVSN 267
              + M    ++LN+SN
Sbjct: 119 QIRIPMLAGRRSLNLSN 135


>gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 184

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 ++++ ++++ V  P N+G+ILR+A  F  D +  T      E   + K+A G  
Sbjct: 16  HWRRHTHNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQ 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             + + + +   +A+    + G++ + L  +    PL +      + L +GAE  G  P 
Sbjct: 76  TKVRWEKTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPA 135

Query: 244 TQETATSMAHLHMPGIIKALN 264
                 ++ ++   G + +LN
Sbjct: 136 LLAAVDAVTYIPQTGRVGSLN 156


>gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2654]
          Length = 249

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++A++ G E  GL  +    A ++  + +     +LN++ +  +  Y     
Sbjct: 115 KRVAVLFGPERAGLENEDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQ 167


>gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 349

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 17/268 (6%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           ++K++  A  ++        ++  +  ++ ++     +YG +   +      + I +L A
Sbjct: 82  NVKNNKLATEKKTGPL--SPRAPEKIKKNRAEEMK--VYGENACLSVFQQRPQAIVRLWA 137

Query: 74  TKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTL 126
           T     +L  +             V    +D++ G    H G            +L   L
Sbjct: 138 TVEGAKKLADELSYLANQKKAYHIVDRIEMDRVTG--TPHHGDICLLVKKSAPFILEGYL 195

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R    L++LD++++  NIG I+R+   ++  GII     +   SA    +  G    
Sbjct: 196 NIPRKRDCLVLLDNIHNAQNIGGIMRTCAFYNVKGIIVENSDTLHSSAAARVAEGGLEFI 255

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            P           Q   +         +     L +     K+  +L  E          
Sbjct: 256 RPLESKHKEIALTQLRQAGYQIVHLTRNKQAPSLAKTTLAAKVVFVL-NEIP--TQDIAY 312

Query: 247 TATSMAHLHMPGIIK-ALNVSNAAAVAL 273
              +   L    ++  +LNV+ +A + L
Sbjct: 313 PNDTTVQLSFENLLNSSLNVTVSAGILL 340


>gi|254993163|ref|ZP_05275353.1| hypothetical protein LmonocytoFSL_09103 [Listeria monocytogenes FSL
           J2-064]
          Length = 47

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M   I++LN+SN AA+  Y       
Sbjct: 2   RIPMTDHIRSLNLSNTAAILAYEALRQQN 30


>gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae
           WSM419]
          Length = 276

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+ +I G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 119 QKVGIIFGRERTGLTNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLK 170


>gi|297562843|ref|YP_003681817.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847291|gb|ADH69311.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 250

 Score = 52.1 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+ G EG GL  + +    ++  +   G  +++N
Sbjct: 171 YPLPRNAVLVFGQEGPGLSEEVRRVCRAVLSISQFGSTRSIN 212


>gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 241

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 17/234 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           H V +  +     + +L                      P   V    + ++ G    H 
Sbjct: 2   HAVGSLFHCKPFIVERLYFEMELAPMFGEICKFLAKEKKPYNQVDSAELLRVSG--TPHH 59

Query: 113 GLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G  +       P L          +    +++LD V+   N+G I R++  F  +  +  
Sbjct: 60  GGVVAIVRRRPPELATTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIA 119

Query: 166 KRYSPSESAVLAKS------ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
                +     A            L  +  +                        +    
Sbjct: 120 ATRKQARPCEEAYREARGGLDMVDLRLVDNVPSFLKGARKTHFVIGLDIEGPPLPELMGI 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++     +A+++G E  GL   +++  + +  +   G I  L+V    A+ L
Sbjct: 180 CPEDELEKPVAIVIGNEETGLHESSKQECSVLVGIPGSGAIDRLSVVAETALLL 233


>gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
 gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
          Length = 281

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 130 VMFGPERTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMR 177


>gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 220

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 20/53 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++A++ G E  GL           + + +     +LN+  A  V  +  +  
Sbjct: 104 QRVAIVFGREASGLTGDEVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKR 156


>gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
 gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
          Length = 244

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL       A ++ ++ +     +LN++    +  Y  + H
Sbjct: 108 EKVAVLFGPERAGLENDDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRH 160


>gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 350

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +           + L+ G E  GL  +  +    +  + +      LN+S+A  +A
Sbjct: 186 MTMQEAGDMLSTMKGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIA 245

Query: 273 L 273
           L
Sbjct: 246 L 246


>gi|254294666|ref|YP_003060689.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254043197|gb|ACT59992.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 165

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 3/102 (2%)

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
              ++  +  +      +  +     +           +D    L +       A +LG 
Sbjct: 44  DMYASDTSKAYENMPYYNWDSIEDMALPRGCQLVGIELTDDAVELPEFKHPRAAAYVLGR 103

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E   L P+       +  +     I   NVS A A+ +Y   
Sbjct: 104 ELGNLSPEMMAKCHHIVKIPTKFCI---NVSLAGALVMYDRM 142


>gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1436

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 4/191 (2%)

Query: 88   PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                  ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 1239 KRDTNTESVNSANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298

Query: 147  IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
            +G I R         +        +       + +                     +K  
Sbjct: 1299 LGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 1359 GYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418

Query: 264  NVSNAAAVALY 274
            N+  A AV ++
Sbjct: 1419 NIQTATAVIVH 1429


>gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
 gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
          Length = 245

 Score = 52.1 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A++ G E  G+       A  +  + +     +LN++    +  Y  + 
Sbjct: 112 EKVAIMFGPERAGMENDDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRR 163


>gi|256274094|gb|EEU09005.1| Trm3p [Saccharomyces cerevisiae JAY291]
          Length = 1436

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 4/191 (2%)

Query: 88   PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                  ++V    I           G            + D V  S+L++V   V+ P N
Sbjct: 1239 KRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPN 1298

Query: 147  IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---RISNLTDALQKMH 203
            +  I R         +        +       + +                     +K  
Sbjct: 1299 LRGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKGKKKE 1358

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +    +  +  S K         K  ++LG E  G+             +   G+I+++
Sbjct: 1359 GYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSM 1418

Query: 264  NVSNAAAVALY 274
            N+  A AV ++
Sbjct: 1419 NIQTATAVIVH 1429


>gi|154273571|ref|XP_001537637.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415245|gb|EDN10598.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 114

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHM---------PGIIKALNVSN 267
              L+LG+E +GL+   ++ A  +  +              + +LNVS 
Sbjct: 43  PCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSV 91


>gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
 gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
          Length = 266

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   ++ ++ G E  GL       + +M  + +     +LN++ A  +  Y   
Sbjct: 120 HAHVAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWW 177


>gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1]
          Length = 257

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  ++ G E  GL       A ++    +     +LNVS A  V  Y   
Sbjct: 122 KTGILFGPERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWW 171


>gi|332638007|ref|ZP_08416870.1| hypothetical protein WcibK1_04874 [Weissella cibaria KACC 11862]
          Length = 197

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 31/91 (34%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +EH        + D L       +          + L       K A + G E  GL 
Sbjct: 98  EHIEHRRVTDYQAVFDQLHADGYTIYAVDNTPGYQPQSLYNVTFPAKSAFLFGEERLGLA 157

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                 A +M ++   G ++++NVS A  + 
Sbjct: 158 DDLIAAADAMIYIPQYGSVRSINVSVAHGII 188


>gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 273

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 19/58 (32%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E    K  ++ G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 113 CYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170


>gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 210

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                + +++     NIG+I+RSA AF  D +    R   ++   +       + H P +
Sbjct: 61  RHPFHVAIENWQHDMNIGSIVRSANAFGADTVHIIGRRRWNKRGAMVTDRYQHVLHHPDV 120

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                  A   +       +  S   +          +  L+ G EG GL P+  E AT 
Sbjct: 121 AAFLEWTAANDLPIIAIDNVPGSVIIETFDI----PKRCVLLFGQEGPGLSPEAIEAATD 176

Query: 251 MAHLHMPGIIKALN 264
           +  +   G  +++N
Sbjct: 177 VVEISQFGSTRSIN 190


>gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 247

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +     +LN+     +  Y     
Sbjct: 112 EKVAVLFGPERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQ 164


>gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
 gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
          Length = 272

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A++ G E  GL  +    A ++  + +     +LN++    +  Y    
Sbjct: 137 QRVAVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMR 188


>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
 gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
          Length = 190

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 24/186 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  +     L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKAEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +         LA+ T  
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTL- 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               + D    S   ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 ---TSEDTPDFSGGWLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEH 186
            G+  H
Sbjct: 157 QGSNYH 162


>gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E    K  ++ G E  GL+      A  +    +     +LN++ A  +  Y    
Sbjct: 113 YYENIGHKTGILFGRERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170


>gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46]
 gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp.
           4-46]
          Length = 250

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++ ++ G E  GL       A ++    +     +LN++ +  +  Y  + 
Sbjct: 112 ERVGILFGRERVGLSNDEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRR 163


>gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 240

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+ L+ G E  GL  K          L       ++N++ A  V+L+  +
Sbjct: 107 KVGLLFGNEASGLNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQIK 156


>gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 245

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ G E  GL  +  +    +  +       +LNV++A  V  Y
Sbjct: 119 VVFGTEKYGLTNEELDLCQILMTIPGNPNYFSLNVASAIQVFAY 162


>gi|268530568|ref|XP_002630410.1| C. briggsae CBR-EXOS-8 protein [Caenorhabditis briggsae]
 gi|187030474|emb|CAP30338.1| CBR-EXOS-8 protein [Caenorhabditis briggsae AF16]
          Length = 361

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +G E +G+             +   G  ++LNV   AA+ +        K
Sbjct: 1   MGDEKEGVPVGLLRAVDQTVEIKQVGHTRSLNVHVTAALMIAKFAEQTNK 50


>gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760]
 gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760]
          Length = 350

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +           + L+ G E  GL  +  +    +  + +      LN+S+A  +A
Sbjct: 186 MTMQEAGDMLSTMKGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIA 245

Query: 273 L 273
           L
Sbjct: 246 L 246


>gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli
           CNPAF512]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis]
 gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis]
          Length = 259

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 280

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT
           894]
          Length = 225

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 70  TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 119


>gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771]
          Length = 450

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 34  TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 83


>gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil
           5]
          Length = 227

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652]
 gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ G E  GL  +    A  +    +     +LN++ A  +  Y    
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 278

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 12/166 (7%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +     ++VL       NIG+  R+        +                 +SGA 
Sbjct: 9   DLKPMPGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQ 68

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE------------QEIKNDKIALI 232
             +    +              F T         P+              + +  + A++
Sbjct: 69  RILDAATVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVL 128

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E  GL       A ++    +     +LN++ A  +  Y   N
Sbjct: 129 FGPERAGLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWN 174


>gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263]
          Length = 228

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                AL+ G E  GL  +    A  +  + M     + N+  A  V  Y   
Sbjct: 104 WMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSFNLGQAVMVYCYQLA 156


>gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC
           19977]
 gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus]
          Length = 153

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 5/137 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++        N G  +R      C+  +    +  SE+ V          H      
Sbjct: 1   MFHILFHEPRIAPNTGNAIRMVAGTGCELHLVQPLFDLSEAKVRRAGLD---YHDMASVT 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +   +         +    ++ +              L+ G E  GL  +       T 
Sbjct: 58  VHENLSAAWKTLKPQRVYAFTAHASVTYTDIAYQPGDVLLFGPEPTGLDAEVLADPHITE 117

Query: 251 MAHLHMPGIIKALNVSN 267
              + +    ++LN+SN
Sbjct: 118 KVRIPLLPGRRSLNLSN 134


>gi|302307217|ref|NP_983802.2| ADL294Cp [Ashbya gossypii ATCC 10895]
 gi|299788893|gb|AAS51626.2| ADL294Cp [Ashbya gossypii ATCC 10895]
          Length = 1372

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 223  EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 K  ++LG E +G+             +   G+I+++N+  A AV ++
Sbjct: 1314 FHFPRKSLILLGTEAEGIPGYLLVELDMCLEIKQHGVIRSMNIQTATAVVVH 1365


>gi|194398548|ref|YP_002038556.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
 gi|194358215|gb|ACF56663.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
          Length = 130

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 22/82 (26%)

Query: 1  MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
          M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1  MTIITSKANSVVKNAKKLHQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61 LNNPSRKIFQLLATKNALARLD 82
          +      I ++ A +N   +L 
Sbjct: 40 VQAGVT-IEKIFALENYRDQLA 60


>gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 253

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + A++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 120 PGRSAILFGPERSGLETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSK 172


>gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 228

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 75  KRHDFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 134

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +   G            PLE         L+ G EG GL P+  + A 
Sbjct: 135 VEDFVQWAEGEGLAVIGIDIFP----DSVPLETYDLPKNCVLVFGQEGPGLTPEVHDAAV 190

Query: 250 SMAHLHMPGIIKALN 264
           +   +   G  +++N
Sbjct: 191 ATLSIEQFGSTRSMN 205


>gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 277

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 19/58 (32%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E    K  ++ G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 113 YYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170


>gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 258

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            K+ ++ G E  GL       A ++  + +     +LN++    +  Y  Q  
Sbjct: 119 GKVGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQ 171


>gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 247

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  G+       A ++ ++ +     +LN++    +  Y  Q  
Sbjct: 112 EKVAVLFGPERAGMENDDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQ 164


>gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 243

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +A + G E  GL     +    +  +       +LN++ A 
Sbjct: 109 VAFVFGGERSGLNRHDIDCCDLITTIPQGNPYPSLNLAQAV 149


>gi|254230740|ref|ZP_04924067.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C]
 gi|124599799|gb|EAY58809.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C]
          Length = 246

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +  L+ G EG G+    +  A     +   G  +++N   AA 
Sbjct: 158 LPRECLLLFGQEGPGITDDARAGAAVTVSIAQFGSTRSINAGVAAG 203


>gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 273

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 19/58 (32%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E    K  ++ G E  GL       A  +    +     +LN++ A  +  Y    
Sbjct: 113 YYENIGHKTGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMK 170


>gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
 gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +I ++ G E  GL  +    A ++  +       +LN+  A  +  Y    
Sbjct: 287 RIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAVLIVCYELFR 337


>gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
          Length = 173

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  +K   + G E   L  +  + A  + ++   G    +N++    V +Y  
Sbjct: 91  HFVHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 142


>gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 170

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    + G E   +     +    + ++   G    +N++    V LY  
Sbjct: 91  FKHPENAFYVFGPEDGSVSKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDR 141


>gi|83313186|ref|YP_423450.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82948027|dbj|BAE52891.1| Predicted rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 111

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            ++        +++G E  G+ P   + A +   + M    ++LNV+
Sbjct: 40  HDRFPFAPGDTIMVGRESCGVPPDVVDRAEARIRIPMQVGARSLNVA 86


>gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A + G E  GL  +    A ++  + +     +LN++ A  +  Y     
Sbjct: 81  PGRSAFLFGPERSGLETEDVALARTILTVPIDPEFGSLNLAQAVILCAYEWSKR 134


>gi|46201064|ref|ZP_00055847.2| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 139

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            ++        +++G E  G+  +  + A +   + M    ++LNV+
Sbjct: 71  HDRFPFAPGDTIMVGRESCGVPTEVFDRAGARIRIPMRAGARSLNVA 117


>gi|317126367|ref|YP_004100479.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315590455|gb|ADU49752.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 234

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+++R+A A +        R   +    +         H P 
Sbjct: 82  RRHDFHVAVENWGHDFNIGSVIRTANAMNAKAFHIVGRRRWNRRGAMVTDRYQHEHHHPD 141

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                       +   G   +  S   +             L+ G EG GL    +    
Sbjct: 142 AGSFAEWARSGGLAIVGIDNLPGSVPVETWD----LPRHCVLVFGQEGPGLSAAMRAECE 197

Query: 250 SMAHLHMPGIIKALN 264
            + H+   G  +++N
Sbjct: 198 VVLHIEQFGSTRSIN 212


>gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1]
 gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1]
          Length = 173

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D    + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 92  FNHPDNAVYVFGPEDGSLPQELVDKADHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|119718571|ref|YP_925536.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119539232|gb|ABL83849.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 219

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 1/135 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG I+R+         +               +          
Sbjct: 55  RRHDFHVAIENWQHDFNIGTIVRT-ANAFLAAEVHIVGNRRWNRRGAMVTDRYQHVRHHP 113

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +      +            +      LE      ++  + G EG GL    +E   
Sbjct: 114 TVEALAGYLHEHPGGPVALHGIDNLPGSAHLETTEVPRRVCFLFGQEGPGLSETAREACD 173

Query: 250 SMAHLHMPGIIKALN 264
               +   G  +++N
Sbjct: 174 GTFSIAQFGSTRSIN 188


>gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6]
 gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6]
          Length = 173

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +K   + G E   L  +  + A  + ++   G    +N++    V +Y  
Sbjct: 91  HFAHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 142


>gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi]
          Length = 392

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +    +       +   Q    + +  + G E   +R +      S   L   G   +LN
Sbjct: 264 YRHPCLHALDGGARKRSQCTLPNLVFYLFGPEDGTIRQEVLARCHSAVFLPTQG---SLN 320

Query: 265 VSNAAAVALYIT 276
           ++ A  V LY  
Sbjct: 321 LAAAVNVVLYDR 332


>gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 230

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+A++ G E  GL  +    A  +++L +     +LN+  A  + LY 
Sbjct: 105 NKVAIVFGCEESGLSNEQLAHADLLSYLPLKVSYPSLNLGQA--IMLYA 151


>gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM
           45100]
          Length = 180

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSN 267
                       L+ G E  GL          T    + M    +++N+SN
Sbjct: 111 WFTDVAYQPGDVLLFGPEPTGLDEDVLNDPRVTEWVRIPMLPGRRSMNLSN 161


>gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 22/72 (30%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +       E+    +K AL+ G E  GL       A  +    M     +LN+
Sbjct: 85  FHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDELALADVLTGAPMVADYPSLNL 144

Query: 266 SNAAAVALYITQ 277
             A  V  Y   
Sbjct: 145 GQAVMVYCYQLA 156


>gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
 gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
          Length = 264

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               + L+ G E  GL  +    A ++  + +     +LN++ A  +  Y    
Sbjct: 119 LGQGVGLLFGPERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQ 172


>gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 156

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI--IKALNVSNAA 269
                 +    LI+G E +G+ P+      S+  +        I +LNVS A 
Sbjct: 104 WVLPPTDKPAILIVGNENQGMHPELGAVCDSVLSISPAASSDLIGSLNVSVAT 156


>gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 261

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + A++ G E  GL       A ++    +     +LN++ A  +  Y     
Sbjct: 129 QRTAVMFGRERVGLTNDEVSLADAIVTFPVSPDFPSLNLAQAVLLVGY-AWRQ 180


>gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 229

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 77  RRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 136

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +   G            PLE         L+ G EG GL P+  E A 
Sbjct: 137 VEDFVQWAQGEGLAIIGIDIFP----DSVPLETYELPRDCVLVFGQEGPGLTPEVHEAAQ 192

Query: 250 SMAHLHMPGIIKALN 264
           +   +   G  +++N
Sbjct: 193 ATLSIEQFGSTRSIN 207


>gi|320094713|ref|ZP_08026467.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978355|gb|EFW09944.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 216

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 L+ G E  GL         ++  +   G  +++NV +AAA+A++   + 
Sbjct: 160 LPASACLLFGEESGGLSEGALAACAAVVAITQRGSTRSMNVGHAAAIAMWAWCSQ 214


>gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
 gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
          Length = 251

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++A++ G E  GL  +    A ++  + +     +LN++    +  Y    
Sbjct: 115 ERVAVLFGPERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMR 166


>gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 586

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 3/162 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + + G H +             L+  +    +  W 
Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELHKRGYTPRHLLV--REGQQKPKWA 187

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            N      +  V     D    G +       +   P     +   +    ++VLD+V+D
Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           P  +G +LR+A  F  D +I T   +      + ++A GA  
Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHF 289


>gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
 gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
          Length = 361

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 11/278 (3%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I++ +  K+  +  S    ++   +    +     +    ++ E + ++G +       
Sbjct: 82  QITETQLGKVKVVTKSTGGDIQTKKKKTGPLSPRAPEKIKKNRAEEMKVFGENACFTLFA 141

Query: 63  NPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                I ++  T     +    +     +      V  + ++++ G E  H G+ +    
Sbjct: 142 QRPASIIRVWTTVETAHKTGEMFSYLAANKKVYHVVDREELERVSGTE-HHGGICMLVKK 200

Query: 121 LLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               TL    D  R    L++LD+V +P NIG ILR+   +    +IT +      +  +
Sbjct: 201 RHPFTLKGYLDITRKEDSLVLLDNVRNPQNIGGILRTCAVYGVKALITAEPELTQSANAM 260

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +  GA                Q   +        +    K + + ++  K   +L +E
Sbjct: 261 RVAEGGAEFVNILQINDTEQALAQLRQAGYQVIFTSTDKQAKSMNKLMRMKKAVFVL-SE 319

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
              +     +    + +L     +K  LNV+  A V L
Sbjct: 320 SD-VS-GFAQNGDEVVNLSFANPLKTGLNVAVTAGVLL 355


>gi|2623830|gb|AAB86563.1| unknown [Schistosoma mansoni]
          Length = 119

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264
                +        E  N ++A+++G+E  G+ P+              +     I +LN
Sbjct: 41  PHFSVNYIPSDYNSEEHNCRLAVVIGSEAHGVSPEAFHLVHLTGGSRLVIPSADRISSLN 100

Query: 265 VSNAAAVALYITQN 278
           V + A+V L   Q 
Sbjct: 101 VLSXASVLLGEIQR 114


>gi|320158924|ref|YP_004191302.1| RRNA methylase [Vibrio vulnificus MO6-24/O]
 gi|319934236|gb|ADV89099.1| RRNA methylase, putative [Vibrio vulnificus MO6-24/O]
          Length = 150

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  +K   + G E   L  +  + A  + ++   G    +N++    V +Y  
Sbjct: 68  HFVHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG---CMNLAATVNVVMYDR 119


>gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
 gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
          Length = 242

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             D  AL+ G E  GL  +    A  +  + M     +LN+  A  V  Y   
Sbjct: 118 WMDHAALVFGREDSGLTNEELALADVLTGVTMVADYPSLNLGQAVMVYCYQLA 170


>gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767]
 gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii]
          Length = 426

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVA---LY 274
            +    I LI+G+EG G+R   +  +  +  L         I+ +LNVS A  +     +
Sbjct: 366 MMAQSPILLIMGSEGAGVRTNLKLKSDYLVGLDKGRRLGVDIVDSLNVSVACGLLISKCF 425

Query: 275 I 275
            
Sbjct: 426 E 426



 Score = 38.3 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 10/148 (6%)

Query: 9   SEKIFSLKDSHYAKLR-----RNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAA 60
           ++K+   + +   +       R H   ++   F            P + ++YG   V AA
Sbjct: 79  NQKVDRQRRARKERKDADRQYRKHEKEERFSRFGGNRDFRQAFKNPLSEYVYGTFPVMAA 138

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L    R  F  L T N          L       +     +    ++    VH G+ LET
Sbjct: 139 LMANKRGSFNKLITHNPKESSGEIFKLAKRYGLRIDRKDSKNDLNVLSDNGVHNGIVLET 198

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHN 146
            PL  P +  +      +    V+  ++
Sbjct: 199 KPLELPIISTLGECDPELGTYKVSIVND 226


>gi|168700455|ref|ZP_02732732.1| tRNA/rRNA methyltransferase (SpoU) [Gemmata obscuriglobus UQM 2246]
          Length = 104

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  ++         H      +    +    L +    ++   +LGAE  GL  +  E  
Sbjct: 14  FQYLTFDEFYAHLPHDCRLIGVEFPHEKAVSLPKFTHPERCVYLLGAEDYGLSKQALERC 73

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
             + +       + LNV+ A ++ +
Sbjct: 74  HRVVYAPSQ---RCLNVAVAGSLIM 95


>gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 586

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 3/162 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + + G H +             L+  +    +  W 
Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELHKRGYTPRHLLV--REGQQKPKWA 187

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            N      +  V     D    G +       +   P     +   +    ++VLD+V+D
Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           P  +G +LR+A  F  D +I T   +      + ++A GA  
Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHF 289


>gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116]
          Length = 175

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 92  FAHPENAVYIFGPEDGSLPQEVVDKADHVVYVPTNG---CMNLAATVNVVLYDR 142


>gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 243

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A + G E  GL       A  +  + +     +LN++ A  +  Y    
Sbjct: 111 GRAAFLFGPERSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSK 162


>gi|163842120|ref|YP_001626525.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162955596|gb|ABY25111.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 221

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + +++     NIG+++R A AF    +    R   +    +       + H P 
Sbjct: 69  RRHEFHVAIENWQHDLNIGSVVRCANAFLAQEVHIIGRRRWNRRGAMVTDKYQHVRHHPT 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +   G            PLE      K  L+ G EG GL     E A 
Sbjct: 129 VEDFVAWAEAEDVAVIGIDNF----PDSVPLETYDLPRKCVLVFGQEGPGLTDAVHEKAE 184

Query: 250 SMAHLHMPGIIKALN 264
           +   +   G  +++N
Sbjct: 185 ATLSIAQFGSTRSIN 199


>gi|70928608|ref|XP_736490.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511067|emb|CAH76189.1| hypothetical protein PC000335.01.0 [Plasmodium chabaudi chabaudi]
          Length = 110

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHL----------HMPGI------IKALNVS 266
             KN+K+ +ILG E KGL     + + +  ++                     + +LNV+
Sbjct: 36  INKNEKVMIILGNESKGLNEDIIKNSDNCIYINNLFDEKNIQPNLKNANDNLIVNSLNVN 95

Query: 267 NAAAVALYITQNH 279
           NA ++ L+   ++
Sbjct: 96  NACSIILHHLHSN 108


>gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 171

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    + G E   +     +    + ++   G    +N++    V LY  
Sbjct: 91  FTHPENAFYVFGPEDGSVPKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDR 141


>gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
 gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
          Length = 231

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +++A++ G E  GL       A ++ ++ +     +LN++    +  Y     
Sbjct: 96  ERVAVLFGPERAGLENDDVARANAIINVPVNPQFASLNLAQCVLLVGYEWMRQ 148


>gi|148298853|ref|NP_001091770.1| putative RNA methyltransferase [Bombyx mori]
 gi|110333471|gb|ABG67686.1| putative RNA methyltransferase [Bombyx mori]
          Length = 122

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 231 LILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LI+G E +G+   + + A+       ++ +   + +LN   A AV     +  F
Sbjct: 51  LIIGGETEGISEDSYKFASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKKQF 104


>gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
          Length = 235

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 81  PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 126


>gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 294

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            KIA++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 140 PKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185


>gi|289803388|ref|ZP_06534017.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 88

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G++++LNVS A+A+ LY  Q   
Sbjct: 2   GMVQSLNVSVASALILYEAQRQR 24


>gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
 gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
          Length = 245

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A++ G E  G+       A ++  + +     +LN++    +  Y  + 
Sbjct: 112 EKVAVMFGPERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRR 163


>gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus
           denitrificans PD1222]
          Length = 246

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A+I G E  GL  +    A ++  + +     +LN++ A  +  Y    
Sbjct: 112 GRVAVIFGPERAGLENEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQ 163


>gi|71416815|ref|XP_810386.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874908|gb|EAN88535.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 532

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS----------MAHLHMPGIIKALNVSNAAAVA 272
              +    +++G E  G+  K  +              + ++   G I +LNV  +  +A
Sbjct: 155 CRLSSPARIVVGHENNGVSRKYIDKMDESGRKGCRAERVVYVPQYGTISSLNVVTSMGIA 214

Query: 273 LYIT 276
           L+  
Sbjct: 215 LFYA 218


>gi|197335061|ref|YP_002155413.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|197316551|gb|ACH65998.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 171

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q    DK   + G E   +  +  + A  + ++   G    +N++    V LY  
Sbjct: 90  QFQHPDKAIYVFGPEDGSITQQVADRADHVVYIPTVG---CMNLAATVNVLLYDR 141


>gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           HTCC2601]
          Length = 247

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A++ G E  GL       A ++  + +     +LN++    +  Y  + 
Sbjct: 112 GRVAVMFGPERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRR 163


>gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 344

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   +        I +L AT     +L
Sbjct: 81  NSSVKEKKNGPLSPRAPEKIKKNRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKL 140

Query: 82  DWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
                    H      +  + ++++ G E             + +L   L   +    L+
Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLV 200

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +   GIIT    S + SA    +  G          +   
Sbjct: 201 LLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHI 260

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
             +Q   +               L +    +K+  +L +E   +       A  +   L 
Sbjct: 261 ALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQLS 316

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+  A + L
Sbjct: 317 FNNPLNSGLNVAVNAGILL 335


>gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 244

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K  ++ G E  GL       A ++  + +     +LN++    +  Y    
Sbjct: 100 QKFGVMFGPERTGLENDDVALADTVVTVPLNPDYSSLNLAQCVLLVAYEWYQ 151


>gi|256824436|ref|YP_003148396.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687829|gb|ACV05631.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 235

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +   +  ++ G EG GL P+      ++ H+   G  +++N
Sbjct: 172 YMLPAECVMVFGQEGPGLTPEVVARCEAVLHIEQFGSTRSIN 213


>gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
 gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
          Length = 247

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A++ G E  GL       A ++  + +     +LN++    +  Y  + 
Sbjct: 112 GRVAVMFGPERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRR 163


>gi|322826123|gb|EFZ30881.1| hypothetical protein TCSYLVIO_2824 [Trypanosoma cruzi]
          Length = 383

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGI-IKALNVSNAAAVALYITQ 277
           L+LG+E KGLR    E         + +P   I ++NVS A +V L+  +
Sbjct: 296 LVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345


>gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
 gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
          Length = 246

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+A++ G E  G+       A ++  + +     +LN++    +  Y  + 
Sbjct: 112 GKVAVMFGPERAGMENDDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRR 163


>gi|71664714|ref|XP_819335.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884631|gb|EAN97484.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 383

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGI-IKALNVSNAAAVALYITQ 277
           L+LG+E KGLR    E         + +P   I ++NVS A +V L+  +
Sbjct: 296 LVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345


>gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
 gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
          Length = 234

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 60/218 (27%), Gaps = 12/218 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
              L + + K   +L       +             +             +     G+  
Sbjct: 22  IELLQSKNYKTISVLVHSKYDDKAGLEKICDEKGINLIYNDKIVNKLQSKENTFVIGVFE 81

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +    +             ++L    D  N+G ILR+A+ F    I         +    
Sbjct: 82  KNFAKIKKDNH--------ILLCEPRDKGNLGTILRTALGFGFKNIAIIDGCDVFD--PK 131

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
              AS        + I    +  +           + +     L+         L+ G E
Sbjct: 132 TVRASMGAIFKMNVEIFKTFEEYKNTFEENNIYSFILNKGSVSLKNVEIKKPFTLMFGNE 191

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL     +  T+   +     I + N+  A+++A+Y
Sbjct: 192 SHGLENFDLK-GTTPVFIEQSEDIDSFNLPIASSIAMY 228


>gi|322505046|emb|CBZ14721.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 465

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 5/171 (2%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                         + +    ++  V++ +    N  ++LR A+ F           + +
Sbjct: 14  FDAWGYHIHWPQNEILSPLTGKVNFVVEDIKFASNAWSLLRLAMFFGVKHPKVLSNMTKT 73

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA- 230
             ++    ++  L  +     +NL     K+                  +    + + + 
Sbjct: 74  TPSMDIMRSANRLFFMHSRVNANLNKTKVKIALTPTHPCAFPVQELAWNKHRHFSGRQSA 133

Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              L+LG E  GL  K  E      ++   G I +L++ +A A+A + T  
Sbjct: 134 GVELVLGME-NGLSQKVVEECDLCMYIPQYGSIGSLSMISALAIAAHSTWR 183


>gi|311744568|ref|ZP_07718368.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312187|gb|EFQ82104.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 209

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L+ G EG GL P+ +    S   +   G  +++N
Sbjct: 148 LPRSCVLVFGQEGPGLSPEARRLCRSTLSIAQYGSTRSIN 187


>gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976]
 gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976]
          Length = 365

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   A        I +L AT     +L
Sbjct: 102 NSTIKEKKTGLLSHRAPEKIKKNRAEEMKVYGENACLALFKQRPDAIVRLWATVEGAKKL 161

Query: 82  DWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
               +    +      V    ++++ G E                L   L   R    L+
Sbjct: 162 GDMLSYLAEYKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLV 221

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +   G+I     + + SA    +  G     P        
Sbjct: 222 LLDAVNNAQNVGGIIRTCAFYGVSGVIVESADTLNSSAAARVAEGGLEFVRPLETKHKQI 281

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
              Q  ++         +     L +    +K   IL      +  +  E    +   L 
Sbjct: 282 ALTQLRNAGYQIVHLTRNKQATSLAKTKLAEKTVFILSD----VPAQDIEYPEDTTVQLS 337

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+ +A + L
Sbjct: 338 FENPLNSGLNVAVSAGIVL 356


>gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299]
 gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299]
          Length = 467

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 16/67 (23%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHL----------------HMPGIIKALNVSNAAAV 271
           K+A++ G E  GL       A     +                       +LN+S A  V
Sbjct: 207 KVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRKRYTGAKGATSLNLSMAVGV 266

Query: 272 ALYITQN 278
             Y    
Sbjct: 267 VAYELFQ 273


>gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha
           C91]
          Length = 154

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 40/157 (25%), Gaps = 20/157 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P N G I+R     S    +            L ++     E       
Sbjct: 1   MLQVILHQPEIPPNTGNIIRLCANTSTQLHLIKPLGFNLSDRQLKRAGLDYHEWARLTVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L   L  M       +   +   K  ++         + G+E  GL  +  E      
Sbjct: 61  EDLASCLSLMDGCRIFAVTTKA--TKHYDKVDYTTDDVFLFGSETCGLPVEVLEDFSQDR 118

Query: 251 MAHLHMPGIIKALNVSNA--------AAVALYITQNH 279
              + M                    AAV +Y     
Sbjct: 119 RIRIPMVPSS--------RSLNLSNSAAVIIYEAWRQ 147


>gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 303

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + LI G E  GL  +    + ++    +     +LN++ A  V  +   
Sbjct: 153 QNVGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWM 203


>gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
 gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
          Length = 171

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               DK   + G E   +  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  FKHPDKAIYVFGPEDGSITQQVADRADHVVYIPTVG---CMNLAATVNVLLYDR 141


>gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
 gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
          Length = 271

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ GAE  GL  +    A  +  +        LN+  A  +  Y  +
Sbjct: 126 IVFGAERTGLTNQEISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWR 172


>gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
 gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
          Length = 249

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A++ G E  GL  +    A ++  + +     +LN++    +  Y  Q 
Sbjct: 112 QRVAVMFGPERAGLENEDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQR 163


>gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ]
          Length = 164

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 55/160 (34%), Gaps = 4/160 (2%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  ++     +VL+    P N G+I R+  A + + I+            + ++     
Sbjct: 4   NLSLMQKPLFKIVLNAPEIPGNTGSIGRTCAALNLELILIHPLGFDISEKAVRRAGLDYW 63

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + I      +    L+       +    +  +++ + +    +   LI G+E  GL    
Sbjct: 64  DSIKISEYRDFDHFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSESVGLPKDL 123

Query: 245 QET-ATSMAHLHMPGI-IKALNV-SNAAAVALYITQNHFA 281
               +       +    I++LN+ S A + A +       
Sbjct: 124 LAKFSNRQVCFPILNKEIRSLNLASIATS-AAFEGIRQLK 162


>gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 250

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++A++ G E  GL  +     T    L+      +LN++ A  V  Y  +
Sbjct: 114 QGQVAMVFGTERTGLENEHLALCTHRVWLNANPDYPSLNLAQALMVCAYALR 165


>gi|218671146|ref|ZP_03520817.1| rRNA methylase protein [Rhizobium etli GR56]
          Length = 153

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                     V  V  + I  I  ++     + +       
Sbjct: 82  AAKTVASGGLVLEVSEKVIGSITRRDNPQMVVGIFDQRWKP 122


>gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 324

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L+ G E  GL        +  + +    +  ++N+S+A A  L    +  
Sbjct: 152 LVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLSHAVAAVLAELFSRR 201


>gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 230

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           DK+A++ G E  GL  +       +++L +     +LN+  A  + LY 
Sbjct: 105 DKVAIVFGCEESGLSNEQLAQVDLISYLPLKVSYPSLNLGQA--IMLYA 151


>gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 304

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  ++ G E  GL       A  +    +     +LN++ AA +  Y    
Sbjct: 119 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 170


>gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
          Length = 306

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  ++ G E  GL       A  +    +     +LN++ AA +  Y    
Sbjct: 119 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 170


>gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 303

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  ++ G E  GL       A  +    +     +LN++ AA +  Y    
Sbjct: 117 QRTGILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMK 168


>gi|322816532|gb|EFZ24804.1| hypothetical protein TCSYLVIO_9048 [Trypanosoma cruzi]
          Length = 469

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++LG E  GL            ++   G I +L++ +A A+AL+   
Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188


>gi|119470949|ref|ZP_01613533.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
 gi|119445971|gb|EAW27251.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
          Length = 172

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +    +LG E   +     +    + ++   G    +N++    V LY   +  
Sbjct: 91  FKHPENAFYVLGPEDGSVPKDVLKWCDEVVYIPTIG---CMNLAATCNVVLYDRLSKL 145


>gi|71654167|ref|XP_815708.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880783|gb|EAN93857.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++LG E  GL            ++   G I +L++ +A A+AL+   
Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188


>gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 368

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 9/143 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A +    +        + A + ++       +     S
Sbjct: 82  LHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPFVVVKAHS 141

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS- 250
           +  +  +       +   ++   +        + +    L+ G+E  GL P+        
Sbjct: 142 SWAEFQEYFRLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGLPPEALSDCNHE 201

Query: 251 -----MAHLHMPGI-IKALNVSN 267
                   + M    ++ LN+S 
Sbjct: 202 PYGGGTLRIPMVETYVRCLNLSI 224


>gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
          Length = 666

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 21/71 (29%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------------ALNV 265
            ++A++ G E  GL     E A     +     +                      +LN+
Sbjct: 160 GRVAVLFGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSLNL 219

Query: 266 SNAAAVALYIT 276
             A  +  Y  
Sbjct: 220 GMAVGIVAYEL 230


>gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 311

 Score = 49.8 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 19/47 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++ G E  GL  +    A  +    +     +LN++ A  +  Y  +
Sbjct: 147 ILFGRERFGLSNEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWR 193


>gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K A++ G E  GL  +    A ++  + +     +LN++ A  +  Y    
Sbjct: 240 GKSAVLFGPERSGLETEDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSK 291


>gi|87121417|ref|ZP_01077306.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163260|gb|EAQ64536.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 175

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +K   I G E   +     + A  +  +   G    +N++ +  V LY  
Sbjct: 96  FKHPEKAIYIFGPEDNTISQAVIDKADHVVFVPTVG---CMNLAASVNVLLYDR 146


>gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 279

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            KI ++ G E  GL+      A  +    +     +LN++ A  +  Y    
Sbjct: 119 HKIGILFGRERWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 278

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 17/53 (32%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  ++ G E  GL          +    +     +LN++ A  +  Y    
Sbjct: 118 KQRTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 278

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                   + +  I L+ G E  GL     E      H        +LN++ A A+AL+ 
Sbjct: 98  QMAKYVHSLPDSNIGLVFGRETYGLTDSEAELCPLRCHFMANPSFPSLNLAQAVALALWE 157

Query: 276 TQ 277
             
Sbjct: 158 IY 159


>gi|71415298|ref|XP_809720.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874146|gb|EAN87869.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 49.8 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++LG E  GL            ++   G I +L++ +A A+AL+   
Sbjct: 143 IVLGME-NGLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIALHSAA 188


>gi|332993001|gb|AEF03056.1| putative cold-shock RNA methyltransferase [Alteromonas sp. SN2]
          Length = 136

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   L     E    + ++        +N++  A V LY  
Sbjct: 58  FKHPENAMYIFGPEDGSLDKSVLEWCDHVVYIPTY---SCMNLAATANVVLYDR 108


>gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
 gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
          Length = 245

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL       A ++  + +     +LN++ A  +  Y     
Sbjct: 112 QRVGVMFGPERTGLENDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQ 164


>gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 224

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 72  KRHDFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 131

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +   G            PLE         L+ G EG GL P+  E A 
Sbjct: 132 VEDFVAWAQGEGLAIIGIDIFP----DSVPLETYDLPKNCVLVFGQEGPGLTPEVHEAAV 187

Query: 250 SMAHLHMPGIIKALN 264
               +   G  +++N
Sbjct: 188 DTLSIEQFGSTRSIN 202


>gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
 gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
          Length = 248

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 25/52 (48%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++A++ G E  GL  +    A ++ ++ +     +LN++    +  Y  + 
Sbjct: 112 ERVAVLFGPERAGLENEDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRR 163


>gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
 gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
          Length = 195

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSN 267
            ++ +K             L+ G E  GL  +T      T+   + M    +++N+SN
Sbjct: 119 FTTHAKTWFTDVDFRRGDVLLFGPEPTGLDEETLADPRITAQLRIPMLPARRSMNLSN 176


>gi|309806142|ref|ZP_07700161.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
 gi|308167497|gb|EFO69657.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
          Length = 115

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +     +  V     D++   E       +         L
Sbjct: 68  KIFDK-SIILVNQAICDQLSDTENSQDIFMVLPINQPHSFL 107


>gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +I ++ G E  GL       A ++  +       +LN+  A  +  Y    
Sbjct: 94  RIGVMFGREDNGLYNDELVRANAILTIDTDPNFYSLNLGQAVLITCYELFR 144


>gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
 gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
          Length = 276

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K  ++ G E  GL          +    +     +LN++ A  +  Y    
Sbjct: 119 HKTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
 gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
          Length = 247

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A++ G E  GL       A ++ ++ +     +LN+     +  Y  Q 
Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQR 163


>gi|84497635|ref|ZP_00996457.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84382523|gb|EAP98405.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 213

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  V  G        +   LD  R     + +++     NIG+++R+A A         
Sbjct: 37  DRRNVVDGYRYWRHDAIVADLDT-RRHDFHIAIENWEHDFNIGSVVRTANAMGAAAFHIV 95

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            +   +    +         H P         A   +   G   +  S   +        
Sbjct: 96  GKRRWNRRGAMVTDRYQHEHHHPTPGDLATWAAANGIRLIGIDNLPGSRPLET----FDL 151

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                L+ G EG GL    +    +  H+   G  +++N
Sbjct: 152 PRNAMLVFGQEGPGLSEAMRAECEATLHIEQFGSTRSIN 190


>gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 237

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 11/230 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   +        I +L AT     +L         H      +  + ++++ G E
Sbjct: 3   VYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERVTGTE 62

Query: 109 AVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                        + +L   L   +    L++LD VN+  N+G I+R+   +   GIIT 
Sbjct: 63  HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGIITE 122

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              S + S+    +  G          +     +Q   +               L +   
Sbjct: 123 NVDSLNSSSAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAPSLTKIKL 182

Query: 226 NDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVAL 273
            +K+  +L +E   +       A  +   L     + + LNV+  A + L
Sbjct: 183 AEKVVFVL-SE---IPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGILL 228


>gi|72162848|ref|YP_290505.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71916580|gb|AAZ56482.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 227

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+++R+A AF+   +    R   +    +       + H P 
Sbjct: 75  RRHPFHVAIENWEHDFNIGSVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHIHHHPD 134

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                       +   G   +  S   +          +  L+ G EG GL  + ++   
Sbjct: 135 TASLVAWAEAHDLPLIGIDNLPGSVPLETYP----LPRECVLVFGQEGPGLSEEVRKVCV 190

Query: 250 SMAHLHMPGIIKALN 264
           S+  +   G  +++N
Sbjct: 191 SVLSIAQFGSTRSIN 205


>gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G EG GL  + +E AT++  +   G  +++N
Sbjct: 157 LPRRCVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 196


>gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
          Length = 233

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G EG GL  + +E AT++  +   G  +++N
Sbjct: 168 LPRRCVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 207


>gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
 gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
          Length = 247

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A++ G E  G+       A+++  + +     +LN++    +  Y  + 
Sbjct: 112 EKVAVMFGPERAGMENADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRR 163


>gi|322495535|emb|CBZ30840.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 607

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 4/161 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           NH   +     +   ++    + L + G   +        R    ++    A+  L  D 
Sbjct: 121 NHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVERGKAIPELLHDR 180

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 181 ---RKTDVVLVDRSVSAAVNPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             +G +LR+A  +  D II T   +      + ++A GA  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVIRAARGAHF 278


>gi|218513549|ref|ZP_03510389.1| rRNA methylase protein [Rhizobium etli 8C-3]
          Length = 150

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGWT-IRTLVYAKAAKGKPLVEQM 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQG 113
                     V  V    I  I  ++    G
Sbjct: 82  AAKTVASGGLVLEVSENVIGSITRRDNPQDG 112


>gi|309808393|ref|ZP_07702293.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168361|gb|EFO70479.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 98

 Score = 49.1 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 8   NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKLKLTN 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            +     +  V     D++   E       
Sbjct: 66  KIFDK-SIILVNQAICDQLSDTENSQDIFY 94


>gi|77362425|ref|YP_341999.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877336|emb|CAI89553.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 170

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    + G E   +     + A  + ++   G    +N++    V LY  
Sbjct: 91  FTHPENAFYVFGPEDGSVSKDVLKWADEVVYIPTIG---CMNLAATCNVVLYDR 141


>gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 17/52 (32%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K  ++ G E  GL          +    +     +LN++ A  +  Y    
Sbjct: 119 HKTGIVFGRERWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40]
 gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 177

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +    + G E   +     + A +  ++   G    LN++    V LY  Q
Sbjct: 92  FTHPEHALYVFGPEDGTINQSIIDAADAAVYIPTKG---CLNLAATVNVVLYDRQ 143


>gi|237822549|ref|ZP_04598394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
          1974M2]
          Length = 115

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 22/82 (26%)

Query: 1  MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
          M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1  MTIITSKANSVVKNAKKLRQKKYRKS---------------------AYLIEGWHLFEEA 39

Query: 61 LNNPSRKIFQLLATKNALARLD 82
          +      I ++ A +N   +L 
Sbjct: 40 VQAGVT-IEKIFALENYRDQLA 60


>gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 155

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 2/134 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL       N+G + R+         +    Y         + A         +   
Sbjct: 8   LHVVLFEPEKAGNVGNVARTCAVLGAALHLIRP-YGFHLGDREFRRAVMDYLQGVELHQH 66

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A Q       +    S+ +++   Q        L+LG E +GL    +E       
Sbjct: 67  DSWTAFQSALPQTARVWAFSTHAQQYHTQAGFQRGDYLLLGPESRGLPAWLREPL-PTLK 125

Query: 254 LHMPGIIKALNVSN 267
           L  PG  ++LN+S 
Sbjct: 126 LPQPGTGRSLNLSV 139


>gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901]
 gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae
           T7901]
          Length = 233

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +  L+ G E  GL           +++ +     +LN+  A  V  Y    
Sbjct: 101 SGRSGLVFGCEASGLSNDQLALCDLYSYIPLATPYPSLNLGQAVMVYSYALSQ 153


>gi|71409670|ref|XP_807167.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871110|gb|EAN85316.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 532

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 231 LILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVALYIT 276
           +++G E  G+  K  +              + ++   G I +LNV  +  +AL+  
Sbjct: 163 IVVGHENNGVSRKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIALFYA 218


>gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 607

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H   +     +   ++    + L + G   +        R    ++     +     D 
Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKRIPEFLRDR 180

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 181 ---RKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             +G +LR+A  +  D II T   +      + ++A GA  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 278


>gi|320009792|gb|ADW04642.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 236

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 5/178 (2%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHN 146
           PHP P           +   +  + G A       +   D   R     + +++     N
Sbjct: 38  PHPLPWPEGERYDPQLLADGDRRNVGDAYRYWTREAIVADLDTRRHDFHVAVENWGHDFN 97

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG+++R+A AF    I    R   +    +       + H P         A +     G
Sbjct: 98  IGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVRHHPDTADLTAWAAAEGFPIIG 157

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  +   ++         +  L+ G EG GL  + +E A+ +  +   G  +++N
Sbjct: 158 IDNLPGAVPLER----TELPRRCVLLFGQEGPGLTEEAREHASMVCSIAQFGSTRSIN 211


>gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum]
 gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 607

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H   +     +   ++    + L + G   +        R    ++     +     D 
Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKRIPEFLRDR 180

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 181 ---RKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             +G +LR+A  +  D II T   +      + ++A GA  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 278


>gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 247

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K++++ G E  GL  +    A ++  + +     +LN+     +  Y     
Sbjct: 112 EKVSVLFGPERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQ 164


>gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 236

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++  ++ G+EG+G+  +     + +  +   G  +++N
Sbjct: 175 LPERCLMVFGSEGEGISAELSAGCSRLLRIGQYGSTRSIN 214


>gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh
           114]
          Length = 251

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++IA++ G E  GL       A ++  + +     +LN++    +  Y    
Sbjct: 115 ERIAVLFGPERAGLENDDIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMR 166


>gi|182437537|ref|YP_001825256.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778192|ref|ZP_08237457.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466053|dbj|BAG20573.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658525|gb|EGE43371.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 244

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G EG GL  + +E A+ +  +   G  +++N
Sbjct: 181 LPRRCVLLFGQEGPGLTEEAREHASMVCSIAQFGSTRSIN 220


>gi|330951486|gb|EGH51746.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 30

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 260 IKALNVSNAAAVALYITQNHFA 281
           + +LNVS A  V L+      +
Sbjct: 1   VSSLNVSVATGVCLFEALRQRS 22


>gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
 gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
          Length = 156

 Score = 48.7 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + +       ++   G    +N++    V LY   
Sbjct: 92  YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143


>gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1]
          Length = 156

 Score = 48.7 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + +       ++   G    +N++    V LY   
Sbjct: 92  YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143


>gi|282863274|ref|ZP_06272333.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282561609|gb|EFB67152.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 243

 Score = 48.7 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 5/178 (2%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           PHP P         + +   +  + G A       +   D   R     + +++     N
Sbjct: 45  PHPLPWPEGDRYDPELLAHGDRRNVGDAYRYWTREAIVADLDLRRHDFHVAVENWGHDFN 104

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG+++R+A AF    +    R   +    +       + H P         A + +   G
Sbjct: 105 IGSVVRTANAFLAKEVHIVGRRRWNRRGAMVTDRYQHVRHHPDTADLTAWAAAEGLPVIG 164

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  +   ++         +  L+ G EG GL  + +  A+ +  +   G  +++N
Sbjct: 165 IDNLPGAVPLER----TELPRRCVLLFGQEGPGLTEEARAHASMVCSIAQFGSTRSIN 218


>gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 344

 Score = 48.7 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +   K+ ++     R   +      E + +YG +   +        I +L AT     +L
Sbjct: 81  NSSVKEKKNGPLSPRAPEKIKKNRLEEMKVYGENACISLFQQRPGSIVRLWATVEGAKKL 140

Query: 82  DWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLM 136
                    H      +  + ++++ G E             + +L   L   +    L+
Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLV 200

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD VN+  N+G I+R+   +   GIIT    S + S+    +  G          +   
Sbjct: 201 LLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLNSSSAARVAEGGLEFVRALETKNKHI 260

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLH 255
             +Q   +               L +    +K+  +L +E   +       A  +   L 
Sbjct: 261 ALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQLS 316

Query: 256 MPGIIKA-LNVSNAAAVAL 273
               + + LNV+  A + L
Sbjct: 317 FNNPLNSGLNVAVNAGILL 335


>gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 256

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K  +I G E  GL       A  +    +     +LN++ A  +  Y  +N
Sbjct: 116 GKTGVIFGREKYGLENDEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRN 167


>gi|114798567|ref|YP_761999.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114738741|gb|ABI76866.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 177

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + A ILG E   L  +       +  +     I   NVS A A+ +Y    H +
Sbjct: 91  FRHPPQAAYILGPEKGNLSAEAVARCAHVVKIPTRFCI---NVSLAGALVMYD--RHLS 144


>gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
 gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
          Length = 175

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D    + G E   L     +    + ++   G    +N++    V LY  
Sbjct: 95  YQHPDNAFYVFGPEDGSLGKDILKWCDDVVYIPTIG---CMNLAATVNVVLYDR 145


>gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
 gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
          Length = 172

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q    +    + G E   L  +  + A  + ++   G    +N++    V LY   
Sbjct: 91  QFTHPENAIYVFGPEDGSLPQEMIDKAHHVVYVPTHG---CMNLAATVNVVLYDRM 143


>gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 254

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 5/165 (3%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +     +  V       T   +   LD  R   L + +++ +   NIG+++R+A AF+ 
Sbjct: 73  ELLTHGDQRNVIDRYRYWTMDAIVADLDEHR-HPLHIAIENWHHDFNIGSVVRTANAFAV 131

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +    +   +    +       + H    +          +   G   I  S   +  
Sbjct: 132 AEVHIVGKRRWNRRGAMVTDRYQHIRHHEDAQAFAQWAQDNGLTVIGIDNIDGSVPIEG- 190

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                      L+ G E  GL    QE + S+ H+   G  +++N
Sbjct: 191 ---FAFPRASVLVFGQESTGLTQPMQEVSQSVVHITQYGSTRSMN 232


>gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii
           B565]
          Length = 234

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+A++ G E  GL  +       +++L +     +LN+  A  + LY 
Sbjct: 105 NKVAIVFGCEESGLSNEQLAEVDLISYLPLKVSYPSLNLGQA--IMLYA 151


>gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
 gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
          Length = 257

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A++ G E  GL       A ++  + +     +LN++    +  Y    
Sbjct: 122 QRVAVMFGPERAGLENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMR 173


>gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     E    ++ +       ++N++ A  +  Y  +
Sbjct: 105 QGPVAIVFGDERSGLTNAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVR 156


>gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 231

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A++ G E  GL     E    ++ +       ++N++ A  +  Y  +
Sbjct: 96  QGPVAIVFGDERSGLTNAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVR 147


>gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 149

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 2/135 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL       N+G + R+         +    Y         + A         +  
Sbjct: 1   MLHLVLYTPEKAGNVGNVARTCAVLGAHLHLIRP-YGFHLQDREFRRAVMDYLSGVTLHE 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                  Q     G      S+ +         +  + L+ G E +GL           A
Sbjct: 60  HASWTHFQASLPAGAHVTAFSTRATHIHTTAPVSRGMYLLFGPESRGLPDWLLSGL-QAA 118

Query: 253 HLHMPGIIKALNVSN 267
            +  P   ++LN+S 
Sbjct: 119 RIPQPAGGRSLNLSV 133


>gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
 gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
          Length = 247

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K+A++ G E  GL       A ++ ++ +     +LN+     +  Y  Q 
Sbjct: 112 EKVAVLFGPERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQR 163


>gi|261335562|emb|CBH18556.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 539

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 231 LILGAEGKGLRPKTQET-------------ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L++G E +G+  K  E              A  + ++   G I +LNV  +  +AL+  
Sbjct: 163 LLIGHENRGVSSKYIECDNATISDESDGQCADCVVYVPQYGTISSLNVVTSMGIALFYA 221


>gi|74025972|ref|XP_829552.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834938|gb|EAN80440.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 539

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 231 LILGAEGKGLRPKTQET-------------ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L++G E +G+  K  E              A  + ++   G I +LNV  +  +AL+  
Sbjct: 163 LLIGHENRGVSSKYIECDNATISDESDGQCADCVVYVPQYGTISSLNVVTSMGIALFYA 221


>gi|257069691|ref|YP_003155946.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560509|gb|ACU86356.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 208

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 5/152 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                   +   LD  R   L + ++++    NIG+++R+A AF+        R   +  
Sbjct: 38  FRYWRREAIVAELDTHR-HDLHVAIENLEHDANIGSVVRTANAFAVGAFHIVGRRRWNRR 96

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             +         H P           Q         +  +   +    +        L++
Sbjct: 97  GAMVTDRYQHEIHHPDAAHLIAWAREQGRPLVAIDLVEGAVPIE----RTALPHNAVLVV 152

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G EG G+ P+    +  +  +   G  +++NV
Sbjct: 153 GQEGPGVSPELLAASELVVGITQFGSTRSINV 184


>gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
 gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
          Length = 156

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L  + +       ++   G    +N++    V LY  
Sbjct: 92  YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDR 142


>gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
 gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
          Length = 156

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L  + +       ++   G    +N++    V LY  
Sbjct: 92  YTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEG---CMNLAATVNVVLYDR 142


>gi|322492292|emb|CBZ27567.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 479

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 57/169 (33%), Gaps = 6/169 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                    +  L  +      + ++ +   +N  ++LR A+ F           + +  
Sbjct: 17  WGYHIQWPQNQILSPLTGKVDFV-VEDIKFAYNAWSLLRLAMFFGVKHPKVLSNMTTTTP 75

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230
           ++    +   L  +     ++L  +  ++                       +D+ +   
Sbjct: 76  SMDIMLSGNRLFFMHSHVKAHLNQSKVRIALTPNHPRAFPVQELVWETHCRFHDRQSAGV 135

Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+LG E  GL  +  +      ++   G + +L++ +A A+A + T  
Sbjct: 136 QLVLGME-NGLSQEVVDACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183


>gi|90408176|ref|ZP_01216344.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90310706|gb|EAS38823.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 173

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                D    + G E   L     ++A ++ ++   G    +N++    V LY  
Sbjct: 90  NFEHPDNALYLFGPEDGTLSQSLIDSADAVVYIPTQG---CMNLAATVNVVLYDR 141


>gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 237

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + A++ G E  GL          ++ +       +LN++ AA V LY
Sbjct: 106 GRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLY 153


>gi|226324181|ref|ZP_03799699.1| hypothetical protein COPCOM_01960 [Coprococcus comes ATCC 27758]
 gi|225207730|gb|EEG90084.1| hypothetical protein COPCOM_01960 [Coprococcus comes ATCC 27758]
          Length = 100

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 27 HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
          +   K++ ++ +K +   +     + G+     A   P  ++ ++  ++   +R   +  
Sbjct: 7  NARVKQLVTWQKKRKARDEEGVYIVEGIRMYREA---PRAQVREVYVSEQFYSRYGEELG 63

Query: 87 L 87
          L
Sbjct: 64 L 64


>gi|86145019|ref|ZP_01063351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218677041|ref|YP_002395860.1| rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85837918|gb|EAQ56030.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218325309|emb|CAV27330.1| rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 170

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   +     + A  + ++   G    +N++    V LY  
Sbjct: 91  FKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141


>gi|84389413|ref|ZP_00991219.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|84376928|gb|EAP93801.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
          Length = 170

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   +     + A  + ++   G    +N++    V LY  
Sbjct: 91  FKHPENAIYIFGPEDGSISQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141


>gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
 gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 124 ILFGRERSGLTNEEVALANRIVTFPVNPGFASLNLAQAVLLMGYE 168


>gi|260904198|ref|ZP_05912520.1| TrmH family RNA methyltransferase [Brevibacterium linens BL2]
          Length = 214

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 6/189 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV       +     +  V           +   LDA R  +  + +++     NIG+++
Sbjct: 24  PVSEHFDPELLAEGDRRNVVDKYRYWKLEAIVADLDATR-HEFHVGVENWQHDLNIGSVV 82

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF+   +    R   +    +       + H P I           +   G     
Sbjct: 83  RTANAFNAAAVHIVGRRRWNRRGAMVTDRYQHIIHHPSIDDLLQWCTDNDVPLIGIDNFP 142

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                  PLE      +  L+ G EG GL  +  + +T++  +   G  +++N + AAA+
Sbjct: 143 ----DSVPLETYDLPRRSLLLFGQEGPGLSEEAHQASTAVLSIAQYGSTRSMNAAAAAAI 198

Query: 272 ALY-ITQNH 279
            ++   + H
Sbjct: 199 TMHSWIRRH 207


>gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
 gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
          Length = 250

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +K+A++ G E  GL  +    A ++  + +  +  +LN+     +  Y     
Sbjct: 112 EKVAVMFGPERAGLENEDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQ 164


>gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  ++ G E  GL          +    +     +LN++ A  +  Y    
Sbjct: 119 HRTGIVFGRERWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|297193239|ref|ZP_06910637.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720510|gb|EDY64418.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G EG GL  + ++ A+ +  +   G  +++N
Sbjct: 156 LPRRCVLLFGQEGPGLTEEARKHASMVCSIAQFGSTRSIN 195


>gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA
           methyltransferase in Bacillus halodurans [Schistosoma
           japonicum]
          Length = 179

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + L LG+E +GL      +   +  +    I   LN+     + +Y  
Sbjct: 131 PRPLVLALGSESRGLSENILNSCDLLLRIPGLAIQ--LNL-----IIVYHR 174


>gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 569

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 4/161 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           NH   +     +   ++    + L + G   +        R    ++     +     D 
Sbjct: 83  NHALVQHFLKLSTNDKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKPIPEFLHDR 142

Query: 86  NLPHPFPVKTVPPQT-IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V     +    G +      A+ T P+    +   +    ++VLD++ DP
Sbjct: 143 ---RKTDVVLVDRSVSVAVTPGSDGYVGDFAIPTPPMKEKLIANHQRLNRVLVLDNIEDP 199

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             +G +LR+A  +  D II T   +      + ++A GA  
Sbjct: 200 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHF 240


>gi|262173677|ref|ZP_06041354.1| predicted rRNA methylase [Vibrio mimicus MB-451]
 gi|261891035|gb|EEY37022.1| predicted rRNA methylase [Vibrio mimicus MB-451]
          Length = 152

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +K   + G E   L     + A  + ++   G    +N++    V +Y   
Sbjct: 68  HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 120


>gi|258623419|ref|ZP_05718422.1| predicted rRNA methylase [Vibrio mimicus VM573]
 gi|258584234|gb|EEW08980.1| predicted rRNA methylase [Vibrio mimicus VM573]
          Length = 152

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +K   + G E   L     + A  + ++   G    +N++    V +Y   
Sbjct: 68  HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 120


>gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603]
 gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603]
          Length = 175

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +K   + G E   L     + A  + ++   G    +N++    V +Y   
Sbjct: 91  HFEHPEKAIYLFGPEDGSLPQDVVDKAHHVVYVPTHG---CMNLAATVNVVMYDRM 143


>gi|322821913|gb|EFZ28112.1| hypothetical protein TCSYLVIO_5661 [Trypanosoma cruzi]
          Length = 532

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVA 272
              +    +++G E  G+  K  +              + ++   G I +LNV  +  +A
Sbjct: 155 CRLSSPARIVVGHENNGVSGKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIA 214

Query: 273 LYIT 276
           L+  
Sbjct: 215 LFYA 218


>gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
 gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
          Length = 276

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +K  ++ G E  GLR      A  +    +     +LN++ A  +  Y    
Sbjct: 119 EKTGILFGRERIGLRNWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLK 170


>gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
 gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
          Length = 403

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLIGYE 168


>gi|157870403|ref|XP_001683752.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126818|emb|CAJ05432.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 471

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 54/165 (32%), Gaps = 6/165 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                    +  L  +      + ++ +   +N   +LR A+ F           + +  
Sbjct: 20  WGYHIQWPQNQILSPLTGKVDFV-VEDIKFAYNAWCLLRLAMFFGVKHPKVLSDMTKTTP 78

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230
           ++    +   L  +     +NL+ +  ++                       +D  +   
Sbjct: 79  SMDIMLSGNRLFFMHSHVKANLSRSKVRIALTPNHPRAFPVQELTWNTHCRFHDHQSAGV 138

Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+LG E  GL  +  +      ++   G + +L++ +A  +A +
Sbjct: 139 ELVLGME-NGLSQEVADACDLCTYIPQYGSVGSLSMLSALGIAAH 182


>gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440]
          Length = 156

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    +       ++   G    +N++    V LY   
Sbjct: 92  YTHPDRAIYIFGPEDGSLSEDVRGWCEETIYIPTEG---CMNLAATVNVVLYDRM 143


>gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella
           bacilliformis KC583]
          Length = 275

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + E    K  ++ G E  GL+         +    +     +LN++ A  +  Y    
Sbjct: 113 QHENLGHKTGILFGRERWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMK 170


>gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri]
 gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri]
          Length = 384

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 15/65 (23%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAA 269
           K  K+A++ G E  GL  +    A++   +   G  K               +LN+S+A 
Sbjct: 201 KRGKVAVLFGNERTGLTNEELAWASAAVVVPTAGAGKLCRKSLKYTGATGPTSLNLSHAV 260

Query: 270 AVALY 274
            +  +
Sbjct: 261 GIIAH 265


>gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
 gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
          Length = 270

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++ ++ G E  GL       A ++  + +     +LN+     +  Y  +  
Sbjct: 133 KRVGVLFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQ 185


>gi|212635898|ref|YP_002312423.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
 gi|212557382|gb|ACJ29836.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
          Length = 175

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               DK   I G E   +  +    A ++ ++   G    +N++ +  V LY  
Sbjct: 97  FEHPDKAIYIFGPEDGTISQQVINRADAVVYVPTVG---CMNLAASVNVLLYDR 147


>gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 243

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 111 ILFGPERAGLETDDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSK 158


>gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 245

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++  ++ G+EG+G+  +      S+  +   G  +++N
Sbjct: 184 LPERCLMVFGSEGEGISAELSAGCASLLRIGQYGSTRSIN 223


>gi|326504182|dbj|BAJ90923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 217

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 2/101 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+       + +      L L G+  +       S  I  LL    A   +  +  
Sbjct: 59  NPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLGSVAIDCLLLLDGA--EVPDELR 116

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
                 V  V    + KI G ++V    A+    +     D
Sbjct: 117 ELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCD 157


>gi|90578908|ref|ZP_01234718.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439741|gb|EAS64922.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 170

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +K   I G E   +     + A  + ++   G    +N++ +  V LY  
Sbjct: 90  HFTHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141


>gi|89073053|ref|ZP_01159600.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051271|gb|EAR56727.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 170

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +K   I G E   +     + A  + ++   G    +N++ +  V LY  
Sbjct: 90  HFTHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141


>gi|325961989|ref|YP_004239895.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468076|gb|ADX71761.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 210

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 4/135 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R   +    +       + H P 
Sbjct: 54  RRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPT 113

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +         + +   G            PLE         L+ G EG GL P+    A 
Sbjct: 114 VEDFVAWAQGEGLAIIGIDIFP----DSVPLETYELPRDCVLVFGQEGPGLTPEVHAAAA 169

Query: 250 SMAHLHMPGIIKALN 264
           +   +   G  +++N
Sbjct: 170 ATLSIEQFGSTRSIN 184


>gi|330446225|ref|ZP_08309877.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490416|dbj|GAA04374.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 170

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +K   I G E   +     + A  + ++   G    +N++ +  V LY  
Sbjct: 90  HFEHPEKAIYIFGPEDGSIAQDVADKADHVVYVPTVG---CMNLAASVNVVLYDR 141


>gi|301111568|ref|XP_002904863.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095193|gb|EEY53245.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 216

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 6/101 (5%)

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
                 P   +           + G+      +               A ++  E  GL 
Sbjct: 51  RYSWSTPSAEVRGCCAFYDFTEARGYLKTKGCTIFGLTAHATPYEGTSAFVIDNEFPGLS 110

Query: 242 PKTQETATSMAHLHMPG---IIKA---LNVSNAAAVALYIT 276
            + +       H+   G      +   L+ +   A+ L+  
Sbjct: 111 EEQRAICDHFVHVPFHGEQTEASSHLTLDTTVVTAITLHHF 151


>gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
 gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
          Length = 260

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 2/167 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + +           G   +  A +        LL+ K      D    LP
Sbjct: 17  DYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDELP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV  V P+  +++ G       LA      L    + ++ ++ +++++ VND  NIG
Sbjct: 77  A--PVYAVSPELAEQVTGYHVHRGALASMQRKPLPTAAELLQTARRVVIMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           AI RSA A   D ++ +   +        K + GA+  +PY R+   
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTW 181


>gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93]
 gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93]
          Length = 170

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N+S    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLSATVNVVLYDR 142


>gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa]
 gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa]
          Length = 206

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 16/59 (27%)

Query: 227 DKIALILGAEGKG---------LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               L+LG+EG G         L   + E  + +        +++LNVS AA V L+  
Sbjct: 136 QPTILVLGSEGTGDEVEGEEINLERSSAEFGSFL-------AVESLNVSVAAGVLLHHL 187


>gi|119946348|ref|YP_944028.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119864952|gb|ABM04429.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 175

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             I  +K   I G E   ++      A ++ ++   G    LN++    V LY  
Sbjct: 95  NFIHPEKALYIFGPEDGTIKQSVVNQADAVVYIPTIG---CLNLAATVNVVLYDR 146


>gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis]
          Length = 143

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N +        +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD               ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKR 167
           A    GI+  KR
Sbjct: 120 AVGAHGIVIPKR 131


>gi|59711260|ref|YP_204036.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|59479361|gb|AAW85148.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
          Length = 169

 Score = 47.5 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q    DK   + G E   +  +  + A  + ++   G    +N++    V LY  
Sbjct: 90  QFQHPDKAIYVFGPEDGSITQQVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141


>gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
 gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
          Length = 246

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+A++ G E  G+       A ++  + +     +LN++    +  Y  Q 
Sbjct: 112 QKVAVMFGPERSGMENDDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQR 163


>gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
 gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
          Length = 177

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                K   + G E   +  +    A ++ ++   G    +N++ +  V LY  
Sbjct: 96  FEHPAKAIYVFGPEDGTISQQVINRADAVVYVPTVG---CMNLAASVNVLLYDR 146


>gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter
           sp. 1501(2011)]
          Length = 300

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           K+A++ G E +GL  +    A     +        LNV++A  V 
Sbjct: 132 KVAVLFGREDRGLTNQELAMADYHIQIDANPDYPVLNVASAIQVI 176


>gi|293351672|ref|XP_002727843.1| PREDICTED: RNA methyltransferase like 1 [Rattus norvegicus]
          Length = 188

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 2/97 (2%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
             Y K     R    + +  +      +   + L G   ++ AL   +       +    
Sbjct: 92  LRYDKACPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEY 151

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +  L  D        +  V  + I            +
Sbjct: 152 IKELPVD--KLKGVSLIKVKFEDIKDWSDLVTPQGIM 186


>gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
 gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
          Length = 410

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYE 168


>gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
 gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
          Length = 407

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 120 GHVGILFGRERAGLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYE 168


>gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
 gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
          Length = 261

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++  ++ G E  GL       A  +    +     +LN++ A  +  Y   
Sbjct: 119 ERTGILFGRERAGLESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWM 169


>gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
 gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
          Length = 397

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++ G E  GL+ +    A  +    +     +LN++ A  +  Y    H
Sbjct: 126 ILFGRERYGLQNEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174


>gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K  ++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 109 KFGVLFGPERTGLENDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQ 159


>gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 237

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++  ++ G EG GL P+ +  +  + H+   G  +++N
Sbjct: 178 FPERCVMLFGQEGAGLTPEARSASVDLVHITQFGSTRSIN 217


>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 22/49 (44%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + +I G E  GL  +    + ++    +  +  +LN+S A  + ++ 
Sbjct: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167


>gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
 gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
          Length = 391

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL  +    AT +    +     +LN++ A  +  Y 
Sbjct: 124 ILFGRERWGLTNEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYE 168


>gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
 gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
          Length = 400

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++ G E  GL       A  +    +     +LN++ A  +  Y    H
Sbjct: 126 ILFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174


>gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
 gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
          Length = 157

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   LR       +   ++   G    +N++ A  V LY  
Sbjct: 91  YKHPPRAFYIFGPEDGSLRKNIIGYCSDTIYIPTTG---CMNLAAAVNVVLYDR 141


>gi|295395717|ref|ZP_06805908.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971417|gb|EFG47301.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 206

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 31/121 (25%), Gaps = 2/121 (1%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N    L                          +  +   +   +I      +AL +    
Sbjct: 63  NWQHDLNIGSVVRTANAFNASAVHIVGKKRWNRRGAMVTDRYQHIYHHETAEALAQWCQE 122

Query: 206 GFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +    +    +  E  +       + G EG GL  +      ++  +   G  +++
Sbjct: 123 RELPLIGIDNFPDSVALETYDLPRECVFLFGQEGPGLTDEAHHACEAVLSIEQYGSTRSM 182

Query: 264 N 264
           N
Sbjct: 183 N 183


>gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 256

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K+ ++ G E  GL       A ++  + +     +LN+     +  Y  + 
Sbjct: 122 QKVGILFGPERAGLENDDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRR 173


>gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 255

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ G E  GL       A ++  + +     +LN++ A  +  Y    
Sbjct: 119 VLFGPERTGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQ 166


>gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586]
 gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21]
 gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80]
 gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
 gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
 gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
          Length = 178

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341]
 gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341]
 gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27]
 gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27]
 gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4]
          Length = 170

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHHVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 155

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   L+ +  +      ++   G   ++N++ A  V LY  
Sbjct: 94  YKHPKRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---SMNLAAAVNVILYDR 144


>gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 155

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   L+ +  +      ++   G   ++N++ A  V LY  
Sbjct: 94  YKHPKRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---SMNLAAAVNVILYDR 144


>gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris BisA53]
          Length = 397

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + ++ G E  GL  +    A  +    +     +LN++ A  +  Y    H
Sbjct: 122 GNVGILFGRERYGLENQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKH 174


>gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
 gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
          Length = 399

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ G E  GL       A  +    +     +LN++ A  +  Y    H
Sbjct: 124 TGIMFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174


>gi|154338423|ref|XP_001565436.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062485|emb|CAM42347.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 517

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274
           +ILG+E +GLR  + +      +  L +   ++ + NVS A +V ++
Sbjct: 420 VILGSEARGLRDLSGKWGVPYQLVTLPLPNPMVDSFNVSVAGSVLMH 466


>gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 404

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ G E  GL       A  +    +     +LN++ A  +  Y    H
Sbjct: 129 TGIMFGRERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 179


>gi|116334955|ref|YP_802450.1| hypothetical protein CRP_053 [Candidatus Carsonella ruddii PV]
 gi|116235236|dbj|BAF35084.1| hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 132

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 1/122 (0%)

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
              + +  I T         +     +  + +   I        L K        + LS 
Sbjct: 6   NFGNINSCIRTCYMFNVYVIIKNIYINSFVINYNNIIFIKNNILLLKFIKKTNCIVSLSI 65

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            S   L       K  +++G E  G+       +  +  +      K+LN+S  + + LY
Sbjct: 66  SSYFVLNNFKLLKKFVIVIGNEKYGINNSIILHSDFILKIKSYRK-KSLNLSIVSGITLY 124

Query: 275 IT 276
             
Sbjct: 125 HF 126


>gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + AL+ G E  GL          ++ +       ++N++ A  +  Y  + 
Sbjct: 112 GRTALVFGDERSGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRR 163


>gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 172

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q +       + G E   L     + A  + ++   G    +N++    V +Y  
Sbjct: 91  QFVHPQNAIYLFGPEDGSLPQDVVDQAHHVVYVPTNG---CMNLAATVNVVMYDR 142


>gi|255030968|ref|ZP_05302919.1| rRNA methylase [Listeria monocytogenes LO28]
          Length = 92

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M+    + +   +     + G H V  AL      + +LL +       +W   L   + 
Sbjct: 1   MEKLQTR-KGRDKTGTYLVEGFHLVEEALRQDG-LVLELLVSSGVSVPEEW---LKGDYD 55

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALET 118
           V  +  + I  ++ +    QG+    
Sbjct: 56  VFEISTE-ISHLISETMTEQGVFAVV 80


>gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 178

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    + +VLD+V    N+GA  R+  AF+ + I+     +   S  + K+A GA   +P
Sbjct: 20  MEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTALGAEMTVP 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQ 245
           +   ++    + ++ + G+    +       +    +       AL+ G E  G+  +  
Sbjct: 80  WSYCASTVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAPGVKYALVFGNEVDGVGQEAV 139

Query: 246 ETATSMAHLHMPGI 259
           +       +   G 
Sbjct: 140 DRCDGAVEIPQAGT 153


>gi|311897345|dbj|BAJ29753.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 219

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               ++  L+ G EG GL  +    AT++  +   G  +++N
Sbjct: 158 FRLPERCVLLFGQEGPGLTEEAWRHATAVCSIAQFGSTRSIN 199


>gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110]
          Length = 398

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            K  ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 120 GKAGILFGRERWGLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYE 168


>gi|330939261|gb|EGH42662.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 33

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 1   RLRLPMREGCRSLNLSNTVAVAVYEAWRQ 29


>gi|328883657|emb|CCA56896.1| tRNA or rRNA methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 220

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +  L+ G EG GL  + +     +  +   G  +++N
Sbjct: 159 LPRRCVLLFGQEGPGLTEEARAHVEMVCSIAQFGSTRSIN 198


>gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 269

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             ++A++ G E +GL     E   ++  +       ++N++
Sbjct: 123 QGEVAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLA 163


>gi|328464784|gb|EGF36099.1| rRNA methylase [Lactobacillus helveticus MTCC 5463]
          Length = 208

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQT 100
           +  +     + G H    A+ +  +K   LL T+ AL + + D ++      V  +    
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSG-QKYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +   +   +   +                 LL   D++ DP N+G I+R+A A   D
Sbjct: 82  ARHLSSTKNSQEIFMVLKIDQPREFPFNYGKWVLL---DNLADPGNVGTIIRTADAAGFD 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEH 186
           G++ +   +   +    ++  G+  H
Sbjct: 139 GVVLSPESADLYNPKTQRAMQGSQFH 164


>gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 269

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +A++ G E +GL     E   ++  +       ++N++
Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLA 163


>gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1]
 gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 178

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 114 YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 165


>gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 256

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K  ++AL+ G E  GL       A       +     +LN++ A  +  +  +
Sbjct: 113 KKGRVALLFGPEASGLDNNEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWR 165


>gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
 gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
          Length = 471

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 22/225 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------NALARLDWD 84
           ++ ++ N++ +      N FL+G+     AL    R   QL                   
Sbjct: 237 RQQRNENRQLKFAPAVGNEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADRIEEIES 296

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVRNSQL 134
                   V  +P   + K++G +  HQG+ LE     +  L                 +
Sbjct: 297 LADEKEVKVVRIPKHRMTKMIG-DGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPI 355

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N GAILRS+     D II +       + V++K++SGA+E      + +
Sbjct: 356 WLVLNEVQDPMNFGAILRSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMED 415

Query: 195 LTDALQK-----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           +   LQ          G        +          +    L+LG
Sbjct: 416 IPALLQNLSSSGWTVVGTVAATEDVEGTVVCGNFALSGPTVLVLG 460


>gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 155

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 143


>gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 399

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 124 ILFGRERSGLTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYE 168


>gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 399

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL  +    A  +    +     +LN++ A  +  Y 
Sbjct: 124 ILFGRERSGLTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYE 168


>gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 240

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +AL+ G E  GL     E    ++ +       ++N++ A  +  Y  +
Sbjct: 105 QGPVALVFGDERSGLTNAEVERVHDLSAVPTAPEQPSINLAQAVLLYAYEVR 156


>gi|322494262|emb|CBZ29561.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 671

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R    +                              A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLQAKEDTTQALLCARTRAAALASIPPSTPAPVADMVVYVPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV+ +  +AL+
Sbjct: 264 SLNVATSLGIALF 276


>gi|260772959|ref|ZP_05881875.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
 gi|260612098|gb|EEX37301.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
          Length = 178

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 226 NDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   AL + G E   +       A  + ++   G    +N++ +  V LY  
Sbjct: 94  HPPQALYVFGPEDGSIPQAIINQADEVVYVPTVG---CMNLAASVNVLLYDR 142


>gi|148975164|ref|ZP_01812088.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145965088|gb|EDK30338.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   +     + A  + ++   G    +N++    V LY  
Sbjct: 91  FKHPENAIYIFGPEDGSITQDVADRADHVVYVPTVG---CMNLAATVNVLLYDR 141


>gi|68059315|ref|XP_671643.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56488008|emb|CAI03490.1| hypothetical protein PB301201.00.0 [Plasmodium berghei]
          Length = 110

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHL----------HMPGI------IKALNVS 266
             KN+K+ +ILG E KGL     + +    ++                     + +LNV+
Sbjct: 36  INKNEKVMIILGNESKGLNEDIIKNSDICIYINNLFDEQNIQPNLKNTNDNIIVNSLNVN 95

Query: 267 NAAAVALYITQNH 279
           N  ++ L+   ++
Sbjct: 96  NVCSIILHHFHSN 108


>gi|169838212|ref|ZP_02871400.1| hypothetical protein cdivTM_14129 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVA 272
            E +   A + + G I++LNVS A  + 
Sbjct: 2   IENSDIKAIIPIYGNIESLNVSVATGIF 29


>gi|85714273|ref|ZP_01045261.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
 gi|85698720|gb|EAQ36589.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
          Length = 156

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L   + P N G ILR       +  I      P       ++    L+ +  +R  + 
Sbjct: 3   VALFQPDIPQNTGTILRLCACLDVEAHIIEPAGFPVSDRHFRRAGMDYLDEVAIVRHDSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   + G + +  ++   +P       D   L+ G E  G+     + A +   + 
Sbjct: 63  QKFQQWRAADGGRLVLFTTKGARPYLDHRFADTDILLFGRESAGVPDAVADAADATLVIP 122

Query: 256 MPGIIKALN 264
           +   +++LN
Sbjct: 123 VRPGLRSLN 131


>gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 218

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 20/42 (47%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               ++  ++ G+EG+G+  +     + +  +   G  +++N
Sbjct: 155 ADLPERCLMVFGSEGEGISLELSAGCSRLLRIGQYGSTRSIN 196


>gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 258

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            K+ ++ G E  GL       A ++  + +     +LN++ A  +  Y 
Sbjct: 120 QKLGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYE 168


>gi|146088269|ref|XP_001466033.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070134|emb|CAM68468.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                    +  L  +      + ++ +   +N  ++LR A+ F  +        + +  
Sbjct: 17  WGYHIQWPQNQILSPLTGKVNFV-VEDIKFAYNAWSLLRLAMFFGVEHPKVLSDMTKTTP 75

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230
           ++    +   L  +     +NL+ +  ++                   Q    D  +   
Sbjct: 76  SMDIMLSGNRLFFMHSRVKANLSRSKVRIALTPNHPRAFPVQELVWNTQFRFRDHQSAGV 135

Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+LG E  GL  +  +      ++   G + +L++ +A A+A + T  
Sbjct: 136 ELVLGME-NGLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183


>gi|322499556|emb|CBZ34630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                    +  L  +      + ++ +   +N  ++LR A+ F  +        + +  
Sbjct: 17  WGYHIQWPQNQILSPLTGKVNFV-VEDIKFAYNAWSLLRLAMFFGVEHPKVLSDMTKTTP 75

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--- 230
           ++    +   L  +     +NL+ +  ++                   Q    D  +   
Sbjct: 76  SMDIMLSGNRLFFMHSRVKANLSRSKVRIALTPNHPRAFPVQELVWKTQFRFRDHHSAGV 135

Query: 231 -LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+LG E  GL  +  +      ++   G + +L++ +A A+A + T  
Sbjct: 136 ELVLGME-NGLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWR 183


>gi|157962405|ref|YP_001502439.1| tRNA/rRNA methyltransferase SpoU [Shewanella pealeana ATCC 700345]
 gi|157847405|gb|ABV87904.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella pealeana ATCC
           700345]
          Length = 174

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               DK   I G E   +  +    A ++ ++   G    +N++ +  V LY  
Sbjct: 97  FEHPDKAIYIFGPEDGTISQQVINGADAVVYVPTVG---CMNLAASVNVLLYDR 147


>gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 160

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 84/153 (54%), Positives = 110/153 (71%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           FPV+ V P+ IDK  G EAVHQG+ +E  PL +  L  +R S LL+VLD V DPHN+GAI
Sbjct: 4   FPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGAI 63

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSAVAF    +ITT R+SP E+ VLAK+ASGALE I +I + NL +A++++H+ GFQTI
Sbjct: 64  MRSAVAFGAGALITTSRHSPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTI 123

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           GL S     +E  +  ++IAL+LGAEG GLR K
Sbjct: 124 GLDSQGPLEMEATLSGNRIALVLGAEGXGLRQK 156


>gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 166

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 166

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 166

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv.
           syringae 642]
 gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7]
          Length = 166

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|289676543|ref|ZP_06497433.1| hypothetical protein PsyrpsF_24909 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 85

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 11  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 62


>gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 165

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 166

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L  + ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|284034585|ref|YP_003384516.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813878|gb|ADB35717.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 226

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               +   L+ G EG GL        T + ++   G  +++N
Sbjct: 163 YELPEACVLLFGQEGPGLTDAAHRICTDVLNIGQYGSTRSIN 204


>gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 156

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L     E    + ++   G    +N++    V LY  
Sbjct: 92  YTHPDRAIYIFGPEDGSLGKDVLEWCEDVIYIPTTG---CMNLAATVNVVLYDR 142


>gi|146096583|ref|XP_001467855.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072221|emb|CAM70923.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322501828|emb|CBZ36910.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 671

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R                                   A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLRAKDDTTQVPLCDRTRTAALAGIPRPTPAPVADMVVYVPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV+ +  +AL+
Sbjct: 264 SLNVATSLGIALF 276


>gi|157873987|ref|XP_001685489.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128561|emb|CAJ08693.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 671

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R                                   A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLRAKDGTTLAPLCDRTRTAALVGIPRSTPAPMADMVVYVPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV+ +  +AL+
Sbjct: 264 SLNVATSLGIALF 276


>gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33]
 gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33]
 gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 170

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                ++   + G E   L  +  + A  + ++   G    +N++    V LY  
Sbjct: 91  HFTHPEQAIYLFGPEDGSLPQEVVDQAHYVVYVPTHG---CMNLAATVNVVLYDR 142


>gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 398

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++ G E  GL       A  +    +     +LN++ A  +  Y    H
Sbjct: 126 ILFGRERYGLENHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKH 174


>gi|332306692|ref|YP_004434543.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174021|gb|AEE23275.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 179

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 9/153 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P + +  +  + + + +   P N+G+ILR+A  +  D ++ T              A   
Sbjct: 10  PDISSPSDDSVTLCIINPKSPQNMGSILRAAGCYRADSVLYTG------ERYARARAFNT 63

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 + I                      +   PL           + G E   +   
Sbjct: 64  DTKNVGLNIPLAQIDEPMPEPHMAMVAVELVEGATPLPHFEHPKHAYYVFGPEDGSIEQS 123

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +    + ++   G    +N++    V LY  
Sbjct: 124 ILDKCQHVVYVPTTG---CMNLAATVNVLLYDR 153


>gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
 gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
          Length = 275

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +I G E  GL       A S+    +     +LN++ A  +  Y    
Sbjct: 131 VIFGPERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFR 178


>gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 234

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + + L++G +  GL  +      S+  +        LN+S+A A+ LY     
Sbjct: 109 ENMTLLIGRDNTGLNSEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQ 161


>gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
 gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 155

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L  + ++    + ++   G    +N++    V LY  
Sbjct: 92  YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDR 142


>gi|134100013|ref|YP_001105674.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291002995|ref|ZP_06560968.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912636|emb|CAM02749.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 81

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                   L++G E  GL     E    +A + M
Sbjct: 12  CDPRGPTVLVVGNETTGLSRGWTEACDEVARIRM 45


>gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5]
          Length = 155

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L  + ++    + ++   G    +N++    V LY  
Sbjct: 92  YTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPTTG---CMNLAATVNVVLYDR 142


>gi|330718907|ref|ZP_08313507.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 33

 Score = 45.6 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M G +++LN S AA++ +Y   N   K
Sbjct: 2   LTIPMIGHVQSLNASVAASLLIYQGFNSRHK 32


>gi|146078921|ref|XP_001463640.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|321399555|emb|CBZ08742.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 518

 Score = 45.6 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274
           +ILG+E +GLR           +  L +   ++ +LNVS A +V ++
Sbjct: 422 VILGSEAQGLRGLNGRWGVPYQLVTLPLSNPMVDSLNVSVAGSVLMH 468


>gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 364

 Score = 45.6 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNA 268
              +    N+ I +I+G E  G+     +           + +   + +LN S A
Sbjct: 301 NYNDVNYSNNSIVIIIGGESYGISEDAYKFGERRKGLRVTIPLLNNVDSLNSSVA 355


>gi|104783013|ref|YP_609511.1| hypothetical protein PSEEN4029 [Pseudomonas entomophila L48]
 gi|95112000|emb|CAK16727.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 133

 Score = 45.6 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    +       ++   G    +N++    V LY   
Sbjct: 69  YTHPDRAIYIFGPEDGSLDADVRAWCEETIYIPTEG---CMNLAATVNVVLYDRM 120


>gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica
           PV-4]
          Length = 154

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 37/160 (23%), Gaps = 24/160 (15%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R      C   +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYSDLTRVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +    L  M               +P  +        L+ G E +GL     E+   + 
Sbjct: 61  KDFESFLSAMAGKRIMACTTKG--SRPHSEIAFEKDDVLLFGPETRGLPMPIIESIPTSQ 118

Query: 251 MAHLHMPGIIKALNVSNA----------AAVALYITQNHF 280
              + M           A           A+  Y      
Sbjct: 119 RLRIPMA----------ASSRSLNLSNSVAIISYEAWRQL 148


>gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 153

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 2/138 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL       N+G + R+      D  +    +         + A        
Sbjct: 1   MSGPLLHVVLFEPEKAGNVGNVARTCAVLGADLHLIRP-FGFHLHDREFRRAVMDYLQGV 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +       A Q       +    S+ ++    +        L+ G E +GL    +E  
Sbjct: 60  TLHEHANWTAYQAALPPEARVWAFSTHAETFHTRAGFRRGDHLVFGPESRGLPVWLREAL 119

Query: 249 TSMAHLHMPGIIKALNVS 266
            +   L  PG  ++LN++
Sbjct: 120 PA-LKLPQPGGGRSLNLA 136


>gi|170727353|ref|YP_001761379.1| tRNA/rRNA methyltransferase SpoU [Shewanella woodyi ATCC 51908]
 gi|169812700|gb|ACA87284.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella woodyi ATCC 51908]
          Length = 177

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  DK   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 99  FVHPDKALYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 149


>gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
 gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
          Length = 202

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  +K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 110 FVHPEKAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 160


>gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
 gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
          Length = 202

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  +K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 110 FVHPEKAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 160


>gi|71281665|ref|YP_270768.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71147405|gb|AAZ27878.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 194

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             I   +   I G E   ++ +  + A  + ++   G    +N++    V LY  
Sbjct: 111 HFIHPPEAVYIFGPEDSSVKQEVIDIADDVVYVPTVG---CMNLAATVNVLLYDR 162


>gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
 gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
          Length = 250

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 21/52 (40%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +++++ G E  GL       A ++  + +     +LN++    +  Y    
Sbjct: 115 RRVSVLFGPERAGLENDDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMR 166


>gi|330808105|ref|YP_004352567.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376213|gb|AEA67563.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 156

 Score = 45.2 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDKDIRDWCEDVVYIPTTG---CMNLAATVNVVLYDRM 143


>gi|195479399|ref|XP_002086585.1| GE22771 [Drosophila yakuba]
 gi|194186375|gb|EDW99986.1| GE22771 [Drosophila yakuba]
          Length = 174

 Score = 45.2 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 20/62 (32%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K 
Sbjct: 104 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKE 163

Query: 77  AL 78
            L
Sbjct: 164 QL 165


>gi|109898550|ref|YP_661805.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
 gi|109700831|gb|ABG40751.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
          Length = 198

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                     + G E   +     +    + ++   G    +N++    V LY  
Sbjct: 112 HFRHPKHAYYVFGPEDGSIEQSVLDRCQHVVYVPTKG---CMNLAATVNVLLYDR 163


>gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
 gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
          Length = 180

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            I  D    I G E   +  +  + A  + ++   G    +N++ +  V LY  
Sbjct: 99  FIHPDNAFYIFGPEDGTIPQQLIDAADDVVYVPTVG---CMNLAASVNVLLYDR 149


>gi|167624575|ref|YP_001674869.1| tRNA/rRNA methyltransferase SpoU [Shewanella halifaxensis HAW-EB4]
 gi|167354597|gb|ABZ77210.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella halifaxensis
           HAW-EB4]
          Length = 174

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +K   I G E   +  +    A ++ ++   G    +N++ +  V LY  
Sbjct: 97  FEHPEKAIYIFGPEDGTISQQVVNGADAVVYVPTVG---CMNLAASVNVLLYDR 147


>gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
 gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
          Length = 153

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 36/159 (22%), Gaps = 22/159 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L       N G I+R          +        E   L ++     +     R 
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSHLHLIEPLGFDLEEKKLRRAGLDYADLANVTRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            N  D LQ M               +P  +        L+ G E +GL       A    
Sbjct: 61  KNYDDFLQAMAGKRIMVCTTKG--SRPHTELEFAKDDVLLFGPETRGLPMDIINAAPLEQ 118

Query: 251 MAHLHM---------PGIIKALNVSNAAAVALYITQNHF 280
              + M            +         A+  Y      
Sbjct: 119 RLRIPMMSSSRSLNLSNSV---------AIISYEAWRQL 148


>gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 289

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ G E  GL       A ++    +     +LN++ A  +  Y    
Sbjct: 130 VLFGPERTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFR 177


>gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 361

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 98/278 (35%), Gaps = 15/278 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
             +  K+  +  S     +   +    +     +    ++ E + +YG +   A  +   
Sbjct: 82  SGEEGKVKVVVRSSGLTEKPREKKTGPLSPRAPEKIKKNRSEEMKVYGENACQALFSQRP 141

Query: 66  RKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             I ++ AT     +    +     +      V    +  +V     H G+ +       
Sbjct: 142 ESIVRIWATVEMAKKSGELFSYLAENKKAYHVVDNAEL-TLVSGTEHHGGICMLVKKARP 200

Query: 124 PT----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            T    LD  R    L+ +D V + HN+G ++R++ AF   G+I  K ++ + ++  A  
Sbjct: 201 LTLSGYLDIPRKQDCLVFIDGVQNAHNLGGVIRTSAAFGVKGVIVEKVFADNLNSSAAAR 260

Query: 180 ASGALEHIPYIRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            +        +  ++  D    Q   +        S+   KPL +     K+  ++  E 
Sbjct: 261 VAEGGMEYIRVLETDYADNALQQLRKAGYQIVHLTSNKQAKPLAKLKFAQKVVFVV-NE- 318

Query: 238 KGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273
           +G +    +       L +      + LN++ A  + L
Sbjct: 319 QG-KTSLAQPEDEQVVLTLGNPLKAE-LNIAVATGILL 354


>gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 184

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 1/136 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +     +++L ++L+ V  P N+G++ R+A AF    I      +P       K+A G  
Sbjct: 21  SWRCRTHNRLGLILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTD 80

Query: 185 EHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             + +     +T A+  M            +    P+ +   +  + L+LGAE  G+ P 
Sbjct: 81  RLVEWHAPVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGDVCLLLGAEEHGVSPA 140

Query: 244 TQETATSMAHLHMPGI 259
             E A S+ ++   G 
Sbjct: 141 ALEAADSVVYIPQVGR 156


>gi|320327784|gb|EFW83792.1| hypothetical protein PsgRace4_23395 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 143

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    ++    + ++   G    +N++    V LY   
Sbjct: 69  YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 120


>gi|237800273|ref|ZP_04588734.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023130|gb|EGI03187.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 136

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    ++    + ++   G    +N++    V LY   
Sbjct: 62  YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 113


>gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 166

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D+   I G E   L    ++    + ++   G    +N++    V LY   
Sbjct: 92  YTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPTEG---CMNLAATVNVVLYDRM 143


>gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 517

 Score = 44.8 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274
           +ILG+E +GLR           +  L +   ++ + NVS A +V ++
Sbjct: 422 VILGSEAQGLRDLNGRWGVPYQLVTLPLPNPMVDSFNVSVAGSVLMH 468


>gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis
           MR-1]
          Length = 203

 Score = 44.8 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  ++   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 111 FVHPERAFYVFGPEDGTIGQEIIDRADAVVYVPTVG---CMNLAASVNVLLYDR 161


>gi|322505530|emb|CAM42983.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 672

 Score = 44.8 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R     T                             A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPVADMVVYIPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV  +  +AL+
Sbjct: 264 SLNVVTSLGIALF 276


>gi|154343195|ref|XP_001567543.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 672

 Score = 44.8 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R     T                             A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPVADMVVYIPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV  +  +AL+
Sbjct: 264 SLNVVTSLGIALF 276


>gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 158

 Score = 44.8 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      +D         +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVAVGAVYKYFDVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           F   GII  K+          K+   +    
Sbjct: 120 FGVHGIIIPKKAGCRSKCYCCKNFCRSSRTY 150


>gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
 gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
          Length = 249

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185


>gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223]
 gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223]
          Length = 249

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185


>gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195]
 gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195]
 gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678]
          Length = 254

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185


>gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
 gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
          Length = 262

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185


>gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
          Length = 410

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL       A  +    +     +LN++ A  +  Y 
Sbjct: 126 IMFGRERYGLENDEVALANRIVTFPVNPGFASLNLAQAVLLMGYE 170


>gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
 gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
          Length = 254

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 135 FVHPAKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 185


>gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           VHQG+  + +P            LD    S LL+VLD V DPHN+GA LR+A 
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTAD 119


>gi|67459187|ref|YP_246811.1| rRNA methylase [Rickettsia felis URRWXCal2]
 gi|67004720|gb|AAY61646.1| rRNA methylase [Rickettsia felis URRWXCal2]
          Length = 46

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
           M GII++LN+  ++ + LY       +
Sbjct: 1   MYGIIESLNLGTSSGIVLYEIAKQRRE 27


>gi|269214337|ref|ZP_06158511.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC
          23970]
 gi|269210034|gb|EEZ76489.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC
          23970]
          Length = 83

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 18/85 (21%)

Query: 1  MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
          M  IS   +E I                  + +     + +   Q     L GVH +   
Sbjct: 1  MKHISSANNEHI------------------RHLHRLLSQGKFRRQYAQTVLEGVHLLQVF 42

Query: 61 LNNPSRKIFQLLATKNALARLDWDA 85
          L +  R +   +      +      
Sbjct: 43 LQSGGRPVGVYIPEAKMPSEEVRKL 67


>gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 271

 Score = 44.4 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ G E  GL       A ++    +     +LN++ A  +  Y 
Sbjct: 130 ILFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYE 174


>gi|269104837|ref|ZP_06157533.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161477|gb|EEZ39974.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 182

 Score = 44.4 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +K   I G E   +  +  + A  + ++   G    +N++ +  V LY  
Sbjct: 94  FQHPNKAIYIFGPEDGSIDQEIADRAQHVVYVPTVG---CMNLAASVNVLLYDR 144


>gi|170723055|ref|YP_001750743.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619]
 gi|169761058|gb|ACA74374.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619]
          Length = 133

 Score = 44.4 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L    +       ++   G    +N++    V LY  
Sbjct: 69  YTHPDRAIYIFGPEDGSLDANVRAWCEETIYIPTEG---CMNLAATVNVVLYDR 119


>gi|307104610|gb|EFN52863.1| hypothetical protein CHLNCDRAFT_138347 [Chlorella variabilis]
          Length = 1710

 Score = 44.4 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 221  EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +      +  L+LG E +G+             +   G   +
Sbjct: 1563 QDFRFPRRTVLVLGREKEGIPSALLGLLDHSVEIPQLGARSS 1604


>gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
 gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
          Length = 429

 Score = 44.4 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 14/55 (25%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYITQ 277
             ++AL+ G E  G+  +  ++             ++L++S+A ++A   LY  +
Sbjct: 352 PPRVALVFGREELGMSDEEVDSCE-----------ESLSLSHAVSIALCTLYQAR 395


>gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200]
          Length = 257

 Score = 44.4 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 130 FVHPVKAFYVFGPEDGTIGQEIIDKADAVVYVPTVG---CMNLAASVNVLLYDR 180


>gi|215445825|ref|ZP_03432577.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85]
 gi|289757748|ref|ZP_06517126.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85]
 gi|289713312|gb|EFD77324.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T85]
          Length = 95

 Score = 44.4 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 3/77 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVTERAAK 77

Query: 103 KIVGKEAVHQGLALETA 119
            +               
Sbjct: 78  ALSDTSHRPGWWRCAIC 94


>gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi]
          Length = 408

 Score = 44.1 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 39/82 (47%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLH---MP-------GIIK------------------- 261
           L+LG E KGL P+     +   H+    M                               
Sbjct: 311 LLLGNEDKGLPPEVVRLCSHAVHIPSPWMQQYERRRLHHADTTATKGNCAKGKNGVVLED 370

Query: 262 ----------ALNVSNAAAVAL 273
                     +LNVS A+A+ L
Sbjct: 371 DVALLRPQEVSLNVSAASAIIL 392


>gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32]
 gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32]
          Length = 163

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +   I G E   L+ +  +      ++   G    +N++ A  V LY   
Sbjct: 99  YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVILYDRM 150


>gi|294141663|ref|YP_003557641.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293328132|dbj|BAJ02863.1| RNA methyltransferase, TrmH family, putative [Shewanella violacea
           DSS12]
          Length = 179

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  DK   + G E   +     + A ++ ++   G    +N++++  V LY  
Sbjct: 101 FVHPDKAIYVFGPEDGTIDQALIDEADAVVYVPTIG---CMNLASSVNVLLYDR 151


>gi|328716874|ref|XP_003246062.1| PREDICTED: NFX1-type zinc finger-containing protein 1-like isoform 2
            [Acyrthosiphon pisum]
 gi|328716876|ref|XP_001949970.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like isoform 1
            [Acyrthosiphon pisum]
          Length = 2065

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 41/179 (22%), Gaps = 1/179 (0%)

Query: 61   LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            L     +++ L   K+   RLD    L              D  +G     +   +    
Sbjct: 1528 LACGHNQVWVLCCDKDKEFRLDSQYLLDKCREPCLQKLNCNDICLGTCGECKQGRIHVPC 1587

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      N            P N   I     +               +        
Sbjct: 1588 SEICNKINPCNHTCKFPCKERCPPCNQKCIYSCVHSRCTRLCGVPCVRCKEKCEWKCPHL 1647

Query: 181  SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGK 238
                +           +  +   + G   IG   +   PL +  + D+   ++ G E +
Sbjct: 1648 KCTRKCFELCNRHPCYEPCKFKLNCGHDCIGFCGEPCPPLCRICQEDEVTTIVFGNEDE 1706


>gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 152

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +   I G E   L+ +  +      ++   G    +N++ A  V +Y   
Sbjct: 91  YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVIMYDRM 142


>gi|127513340|ref|YP_001094537.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
 gi|126638635|gb|ABO24278.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
          Length = 174

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                K   + G E   L     + A  + ++   G    +N++++  V LY  
Sbjct: 97  FSHPQKAIYLFGPEDGTLDQALIDCADEVVYVPTVG---CMNLASSVNVLLYDR 147


>gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 152

 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +   I G E   L+ +  +      ++   G    +N++ A  V +Y   
Sbjct: 91  YKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNG---CMNLAAAVNVIMYDRM 142


>gi|157870265|ref|XP_001683683.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126749|emb|CAJ05174.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 518

 Score = 44.1 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHMPGII-KALNVSNAAAVALY 274
           +ILG+E +GLR           +  L +P  +  + NVS A +V ++
Sbjct: 423 VILGSEAQGLRDLNGRWGVPYQLVTLPLPNPVVDSFNVSVAGSVLMH 469


>gi|163750174|ref|ZP_02157416.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
 gi|161330030|gb|EDQ01014.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
          Length = 183

 Score = 44.1 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  DK   + G E   +     + A ++ ++   G    +N++++  V LY  
Sbjct: 104 FVHPDKAIYVFGPEDGTIEQALIDAADAVVYVPTIG---CMNLASSVNVLLYDR 154


>gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 253

 Score = 44.1 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ GAE  GL  +    A  +    +     +LN++ A  V  +
Sbjct: 116 VMFGAEKAGLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAH 159


>gi|261326341|emb|CBH09167.1| SpoU type methylase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 481

 Score = 43.7 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +ILG E  G+  + +       ++   G + +L++ +A A+A++
Sbjct: 142 IILGME-NGMSEEVRAGCDYCLYVPQYGSVGSLSMLSAMAIAVH 184


>gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 163

 Score = 43.7 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 4/132 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +V      P N G  +R A A  C+  +        + +      +G   H     +
Sbjct: 1   MFRLVFVEPRIPPNTGNAIRLAAATGCELHL--VGPLAFDMSDARLRRAGLDYHEFATVV 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
            +             +    +  +++P       D  AL+ G E  GL          T 
Sbjct: 59  VHPNMDAAWEVLASGRIFAFTGRAERPYTDVEYRDGDALMFGTERTGLPDSILTDPRITE 118

Query: 251 MAHLHMPGIIKA 262
              + M    ++
Sbjct: 119 RVRIPMLPGRRS 130


>gi|331006116|ref|ZP_08329450.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989]
 gi|330420095|gb|EGG94427.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989]
          Length = 136

 Score = 43.7 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   L+ +  +    + ++   G    +N++    V LY  
Sbjct: 69  YKHPARAFYIFGPEDGTLKKEITDLCEDVVYIPTEG---CMNLAATVNVVLYDR 119


>gi|116748593|ref|YP_845280.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
 gi|193806435|sp|A0LHE3|RSMG2_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase G 2;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase 2; Short=16S rRNA m7G
           methyltransferase 2
 gi|116697657|gb|ABK16845.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
          Length = 498

 Score = 43.7 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 15/255 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           K  ++K   + K+   + D Y+ ++     SR   + +   + G   V   L +      
Sbjct: 232 KETAMKRHGFRKIESENNDLYRDIRKLLT-SRGIRKQQRALVSGSKQVHETLRDFPDDCL 290

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +A    +   +     P       + P   + +         L ++   + +      
Sbjct: 291 AWIAPGQEMPPPE---GAPGHMSWYQMAPALFETLDVFGTRTPLLLIKVGEIETWDP-VE 346

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                  VL    DP N+GA++RSA AF    +I  +  +        +++ GA+     
Sbjct: 347 GFPAGCSVLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASGGAVLR--- 403

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                L +     +      I   S   + + + +      L+ G EG GL    +  + 
Sbjct: 404 ---MKLRNGPPLENLPENLPILPLSAEGRDITRHVFPAAFGLLPGLEGPGLPDNWRRKS- 459

Query: 250 SMAHLHMPGIIKALN 264
               + +   +++LN
Sbjct: 460 --FAIPICKDVESLN 472


>gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 167

 Score = 43.3 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 229 IALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKA 262
            AL+ GAE  GL P+       T    + M   +++
Sbjct: 100 DALLFGAEPTGLPPEVLADPRLTDRVRIPMLPGLRS 135


>gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 409

 Score = 43.3 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 39/128 (30%)

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +H       +L                     ++  +      +  L+LG E KGL P+ 
Sbjct: 265 QHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPMRRRLLLLGNEDKGLPPEV 324

Query: 245 QETATSMAHLH---MP-------GIIK-----------------------------ALNV 265
               +   H+    M                                         +LNV
Sbjct: 325 VRLCSHAVHIPSPWMQQYEQRWLHHADTTAKKGNCAKGKNGVVLEDDVVLLRPQEVSLNV 384

Query: 266 SNAAAVAL 273
           S A+A+ L
Sbjct: 385 SAASAIIL 392


>gi|115389798|ref|XP_001212404.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194800|gb|EAU36500.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 199

 Score = 43.3 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVK--TVPPQTI 101
           FLYG   V AAL    R++++L   + A   L           L    PVK        +
Sbjct: 10  FLYGTSAVEAALRCGRRQLYKLYLYQAADEPLSPAKVVLRKLALSKGIPVKMAFAGWDRL 69

Query: 102 DKIVGKEAVHQGL 114
              V     H G 
Sbjct: 70  FDKVSMGRAHNGC 82


>gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 408

 Score = 43.3 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 39/82 (47%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLH---MP-------GIIK------------------- 261
           L+LG E +GL P+     +   H+    M                               
Sbjct: 311 LLLGNEDRGLPPEVVRLCSHAVHIPSPWMQQYERRWLHHADTTATKGNCAKGKNGVVLED 370

Query: 262 ----------ALNVSNAAAVAL 273
                     +LNVS A+A+ L
Sbjct: 371 DVVLLRPQEVSLNVSAASAIIL 392


>gi|299143770|ref|ZP_07036850.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518255|gb|EFI41994.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 96

 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 48  NLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             ++YG + V   L N    K++  +       +  +         +  +  + +D++  
Sbjct: 2   KEYVYGRNPVIEILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDELS- 60

Query: 107 KEAVHQGLALETAPLLSPTLD 127
           + A HQG+    +     TL+
Sbjct: 61  EGANHQGVVALVSGYEYSTLE 81


>gi|167949869|ref|ZP_02536943.1| hypothetical protein Epers_26767 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score = 43.3 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E   + G+H V  AL +       LL    ++A  +   +         + V  + +D+
Sbjct: 2   SETQLIIGLHAVRTALKHGDAVTEILLESRRRDARIKEVLNLARQAGLKPRQVEGEELDR 61

Query: 104 IVGKEAVHQGLAL 116
           +            
Sbjct: 62  LAQGRQPPGWWRP 74


>gi|154815977|emb|CAO85681.1| putative 23S rRNA methyltransferase [Clostridium sp.]
          Length = 165

 Score = 43.3 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARL 81
            +++   K ++   +  +H  + +   + G   V  AL +     + L+  K  N +   
Sbjct: 12  SKDNNLVKFVRKL-RDKKHRKKEKKFIVEGFRFVEEALKSDYCIEYILINEKSLNKVQEF 70

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           + +  +     V  +   + + I G E   
Sbjct: 71  NINIEVIEN-KVYILNESSFNSISGTENSQ 99


>gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis]
          Length = 365

 Score = 43.3 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA---LYITQNHF 280
           L+ G E  GL        +    +       +LN+S+A AV    L+  Q   
Sbjct: 174 LVFGREESGLLESELLLCSHACSIPTGRSQPSLNLSHAVAVVLAQLFDIQQQR 226


>gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 164

 Score = 42.9 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ++   I G E   L+         + ++   G    +N++    V LY   
Sbjct: 104 YQHPERAFYIFGPEDGSLKKNVTSWCKDIVYIPTHG---CMNLAATVNVVLYDRM 155


>gi|313611174|gb|EFR85995.1| putative TrmH family tRNA/rRNA methyltransferase yacO [Listeria
           monocytogenes FSL F2-208]
          Length = 86

 Score = 42.9 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +   +              V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD 127
            I+K+V     HQG+A + A      LD
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELD 86


>gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 182

 Score = 42.9 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    +LG E   +          + ++        +N++  A V LY  
Sbjct: 106 FEHPENAFYLLGPEDGSIGEDILSWCDHVVYVPTY---SCMNLAATANVLLYDR 156


>gi|322499488|emb|CBZ34561.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 519

 Score = 42.9 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 231 LILGAEGKGLRPKTQETA--TSMAHLHM-PGIIKALNVSNAAAVALY 274
           +ILG+E +GLR           +  L +   ++ + NVS A +V ++
Sbjct: 422 VILGSEAQGLRGLNGRWGVPYQLVTLPLSNPMVDSFNVSVAGSVLMH 468


>gi|238022622|ref|ZP_04603048.1| hypothetical protein GCWU000324_02531 [Kingella oralis ATCC 51147]
 gi|237866062|gb|EEP67196.1| hypothetical protein GCWU000324_02531 [Kingella oralis ATCC 51147]
          Length = 167

 Score = 42.5 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           ++        +   K +      ++H  +     L G H ++A L+  +    Q +    
Sbjct: 51  NTMPPIQSPQNPQLKHLAKILTATKHRREHRQAALEGAHLLAAYLDAGNTP--QQVYIPE 108

Query: 77  ALARLDWDANLPHPFPVKTVPP 98
              R    A L    P   + P
Sbjct: 109 PKLRQPETATLAARLPENRITP 130


>gi|152995596|ref|YP_001340431.1| tRNA/rRNA methyltransferase SpoU [Marinomonas sp. MWYL1]
 gi|150836520|gb|ABR70496.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas sp. MWYL1]
          Length = 176

 Score = 42.5 bits (98), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +K   I G E   +  K  + A  +  +   G    +N++ +  V LY  
Sbjct: 96  FNHPEKALYIFGPEDGTIGQKIVDRADFVVFVPTVG---CMNLAASVNVLLYDR 146


>gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
 gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
          Length = 200

 Score = 42.5 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  +    I G E   +     + A  + ++   G    +N++ +  V LY  
Sbjct: 116 HFVHPEHAFYIFGPEDGTIPQVLIDAAHEVVYVPTVG---CMNLAASVNVLLYDR 167


>gi|332527885|ref|ZP_08403922.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112462|gb|EGJ12255.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score = 42.5 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++    +++   Q      +   ++L G H   AAL    R   Q L   +A  +   
Sbjct: 9   SRDNPLLARVRRLAQDGNAYRRVGQVWLEGDHLC-AALRARGRPAAQALVAVSAWEQGGA 67

Query: 84  DANLPHPFP-VKTVPPQTIDKIVGKEAV 110
             +L      V  V         G E+ 
Sbjct: 68  LRDLAGWAQAVAVVDDALFAAASGLESP 95


>gi|293372858|ref|ZP_06619232.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632147|gb|EFF50751.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 104

 Score = 42.5 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLD 127
           I      HQG+    + +     +
Sbjct: 63  IT--RKNHQGVIAFISSVTYQKAE 84


>gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 157

 Score = 42.5 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ++   I G E   L+ +  +      ++   G    +N++ A  V LY   
Sbjct: 94  YKHPERAFYIFGPEDGTLKKEITDFCRDTIYVPTKG---CMNLAAAVNVILYDRM 145


>gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 157

 Score = 42.5 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ++   I G E   L+ +  +      ++   G    +N++ A  V LY   
Sbjct: 94  YKHPERAFYIFGPEDGTLKKEITDFCRDTIYVPTKG---CMNLAAAVNVILYDRM 145


>gi|239997256|ref|ZP_04717780.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 169

 Score = 42.5 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +LG E   +          + ++        +N++  A V LY  
Sbjct: 93  FEHPSNAFYLLGPEDGSIGEDVLSWCDHVVYVPT---FSCMNLAATANVLLYDR 143


>gi|154334197|ref|XP_001563350.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060366|emb|CAM37527.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 526

 Score = 42.5 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + GAE   L     +     +  +   G   ++N++    V LY  
Sbjct: 439 VFYVFGAEDGTLSAHHLQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 484


>gi|124027746|ref|YP_001013065.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456]
 gi|123978440|gb|ABM80721.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456]
          Length = 154

 Score = 42.1 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 227 DKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIK--ALNVSNAAAVALYITQN 278
           +K ALI+GAE  G+     E       +  + +   ++  + NV  +  +ALY  + 
Sbjct: 89  EKTALIIGAEDYGIPRTVLEKIPEPRDLVVIPV--GVEGMSYNVVASLVMALYELKR 143


>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 213

 Score = 42.1 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWD 84
           + + YK+++  +  S+   + +   + G+     AL   P ++I  +L T+ A       
Sbjct: 5   SQKLYKEIKKLH-SSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPL 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                      +  +  + +   +     L                +   ++VLD + DP
Sbjct: 64  NKK------YIITEKDFEALSQTQNPQGVL---ILAEKPKLEQLSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            NIG ILR+A+A     +I         +    ++  GA  
Sbjct: 115 GNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQF 155


>gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 155

 Score = 42.1 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   L+    +      ++   G    +N++ A  V LY  
Sbjct: 94  YKHPKRAFYIFGPEDGTLKKDITDFCRETIYVPTKG---CMNLAAAVNVILYDR 144


>gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185]
 gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185]
          Length = 241

 Score = 42.1 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   K   + G E   +  +  + A ++ ++   G    +N++ +  V LY  
Sbjct: 118 FVHPAKAFYVFGPEDGTIGQEIIDKANAVVYVPTVG---CMNLAASVNVLLYDR 168


>gi|332289500|ref|YP_004420352.1| putative methyltransferase [Gallibacterium anatis UMN179]
 gi|330432396|gb|AEC17455.1| putative methyltransferase [Gallibacterium anatis UMN179]
          Length = 357

 Score = 42.1 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 29/269 (10%)

Query: 23  LRRNHRDYKKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           ++ N    K  +      R       ++ E + +YG     A   +  + I +L  T+  
Sbjct: 95  IKSNVPQQKVKKKGALSPRAPENIRQNRAEEVKVYGEAACFALFEHRPQDIVRLWVTQEL 154

Query: 78  LARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNS 132
             +     + L        V      ++V     H G+ L             L+  +  
Sbjct: 155 TKKAGEMMSYLAENKKAYHVVKGDELQLVSGTEHHGGICLLVKKRPPLMLKSYLETPKKR 214

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++VLD + +  NIG +L++   +    ++T K  +    A +  +  G      +   
Sbjct: 215 DCIVVLDGIGNAANIGGVLKTLAFYGVQNVVTDKIDAVQSPAAMRVAEGGIEYLRLFEVA 274

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                      +         S     L +    DK+A++       L   T +      
Sbjct: 275 HPTLALDLLKQAGYQLIRASLSKQAIALNKLELQDKVAIV-------LSENTIKDLDPEV 327

Query: 253 HLHMPGIIKA--------LNVSNAAAVAL 273
                 +  +        LNV+  A V L
Sbjct: 328 T----NVALSTTNPLATGLNVAVTAGVLL 352


>gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 263

 Score = 42.1 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 20/51 (39%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  ++ G E  GL       A ++    +     +LN++ +  +  Y  + 
Sbjct: 115 RCGVLFGKERTGLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRK 165


>gi|15811191|gb|AAL08856.1|AF308680_1 unknown [Ehrlichia ruminantium]
          Length = 99

 Score = 42.1 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105
           +YG H   AAL N +RK  +LL T+N +          + +       K V   TI+ ++
Sbjct: 1   IYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYPKQVNINTINSVL 60

Query: 106 GKEAVHQGLALETAPLLSPTLD 127
              + HQG+AL+ + + + +++
Sbjct: 61  PPNSNHQGIALQVSIVDTVSIE 82


>gi|2274931|emb|CAA74647.1| hypothetical protein X [Eubacterium acidaminophilum]
          Length = 25

 Score = 41.7 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN+SN+ A+ +Y      
Sbjct: 1   SLNLSNSVAIVVYEALRQL 19


>gi|149909608|ref|ZP_01898261.1| 23S rRNA methyltransferase [Moritella sp. PE36]
 gi|149807312|gb|EDM67265.1| 23S rRNA methyltransferase [Moritella sp. PE36]
          Length = 172

 Score = 41.7 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               D +  I G E   +  K  + A+++ ++   G    +N++    V LY  
Sbjct: 91  FEHPDNVIYIFGPEDGTIDQKVIDRASAVVYVPTVG---CMNLAATVNVLLYDR 141


>gi|164604788|gb|ABY61955.1| putative rRNA methylase YibK [Haemophilus influenzae]
          Length = 37

 Score = 41.7 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M    +++N+SN+ AV +Y      
Sbjct: 1   MTANSRSMNLSNSVAVTVYEAWRQL 25


>gi|169837950|ref|ZP_02871138.1| hypothetical protein cdivTM_12794 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 41.7 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G  +++NV  A+ + LY
Sbjct: 1   TIFIPQRGSTRSVNVGVASGIVLY 24


>gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 127

 Score = 41.7 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P           L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  SD-GAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CD 160
             
Sbjct: 121 VH 122


>gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 391

 Score = 41.7 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                K  +  L+LG EG GL  +     T  AH+ +   
Sbjct: 283 CGPVNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLAPE 322


>gi|239617839|ref|YP_002941161.1| hypothetical protein Kole_1465 [Kosmotoga olearia TBF 19.5.1]
 gi|239506670|gb|ACR80157.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
          Length = 188

 Score = 41.7 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
            +    + G    GL  +  +         + G   + N +S   A A+ L
Sbjct: 133 KEPFLFLFGT-SWGLPKEILDLCDYALE-PIRGNA-SFNHLSVRAAVAIIL 180


>gi|20094038|ref|NP_613885.1| hypothetical protein MK0600 [Methanopyrus kandleri AV19]
 gi|19887015|gb|AAM01815.1| Uncharacterized protein conserved in archaea [Methanopyrus kandleri
           AV19]
          Length = 157

 Score = 41.4 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-N-AAAVALYITQNHFAK 282
           +  + G+   GL  +  E      ++   G  +  NV    A A+ L+  +    +
Sbjct: 107 VCFVFGSARPGLTKQELELGDEAVYV---GTER--NVGEVGAVAILLHELRKRLNQ 157


>gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
 gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
          Length = 393

 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ G E  GL  +    A  +  +        LN++ A    +Y   N  
Sbjct: 230 VLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNAR 279


>gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 391

 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                K  +  L+LG EG GL  +     T  AH+ +   
Sbjct: 283 CGPVNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLAPE 322


>gi|221134597|ref|ZP_03560900.1| putative cold-shock RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 166

 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    ILG E   +  +  ETA ++ ++       ++N+     V LY  
Sbjct: 91  FTHPENAYYILGPEDGSVPIEIVETADAVVYVPTFN---SMNLGATGNVILYDR 141


>gi|149019401|ref|ZP_01834763.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931271|gb|EDK82250.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 81

 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 48  NLFLYGVHTVSAA-LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ A L N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALET 118
           + AVHQG   E 
Sbjct: 63  EGAVHQGFVYEC 74


>gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54
           KI   K       +   R  +  +    K ++     +                 +++G 
Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           H V A L    R+I  L    N    +   A   +    K +  +    I+ K  VH G
Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKNGVHNG 219


>gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum
           lavamentivorans DS-1]
          Length = 262

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L+ G E  GL       A ++  + +     +LN++    +  Y    
Sbjct: 126 LLFGPERTGLENDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHK 173


>gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01]
          Length = 223

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVSNAAAVALYIT 276
               D+   I G E   L+ +  +     + ++   G    +N++    V LY  
Sbjct: 159 YTHPDRALYIFGPEDGSLQQEILDWCAGEVVYIPTQG---CMNLAATVNVVLYDR 210


>gi|229822119|ref|YP_002883645.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229568032|gb|ACQ81883.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 222

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L+ G EG GL     E A  + H+   G  +++N
Sbjct: 160 LPRACVLLFGQEGAGLTADALEAAAEVRHITQFGSTRSVN 199


>gi|328716878|ref|XP_001950343.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like
            [Acyrthosiphon pisum]
          Length = 1999

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 30/179 (16%), Gaps = 1/179 (0%)

Query: 61   LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            L      I+ L   K+   R D    L              D  +G     +   L    
Sbjct: 1495 LACGHNSIWVLCCDKDKEFRPDSQYLLDKCREPCLQKLNCNDICLGTCGECKQGRLHIPC 1554

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      N            P N   I     +               +        
Sbjct: 1555 SDICNKIYSCNHICKFPCKEQCPPCNQKCIYSCVHSRCTRLCGNPCVPCKEKCEWKCPHL 1614

Query: 181  SGAL-EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
                  H    R         K+                      + +   +I G E  
Sbjct: 1615 VCTRKCHELCDRKPCFEHCTIKLKCGHECIGFCGEPCPPLCRICQEYEVTTIIFGNEDD 1673


>gi|309798987|ref|ZP_07693244.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302]
 gi|308117391|gb|EFO54810.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302]
          Length = 108

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 11/107 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K  +  +QK ++        + G H    A+   + KI ++ A      +L        
Sbjct: 2   VKNAKKLHQK-KYRKTS--YLIEGWHLFEEAVQAGA-KIEKIFALVEYGDKLV------- 50

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            +P      + I   +      QG+            D  +   L +
Sbjct: 51  DYPQTVFVTEEILLDLADSQTPQGIVAIVQKEEDQLPDLSQGKYLFL 97


>gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii]
 gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276
           L+ G E  GL  +    A  +  +    +   LN++ A  +    Y  
Sbjct: 109 LMFGRESSGLTNEEVALANKVLTIEANPVYPVLNLAQA--IVCVSYEL 154


>gi|320169042|gb|EFW45941.1| CLEC16A [Capsaspora owczarzaki ATCC 30864]
          Length = 1088

 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 58/219 (26%), Gaps = 11/219 (5%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFP 92
             + ++ T Q ++L +  + +++  L   +    ++F     KN L+             
Sbjct: 28  LAKNAKVTEQNKSLVVETLRSMAEILIWGDQNDNRVFDFFLEKNILSFFLKILAQNTGRY 87

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK    QT+  +    +            +   L     + +++     +D   +   + 
Sbjct: 88  VKVQLLQTLSILFENISN--------ETSIYYLLSNNHINAIIVHKFDFSDEEVLAYYIS 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
                S      T  +  +E        + A++   +              +        
Sbjct: 140 FLKTLSLKLNTHTIHFFFNEHLHDFPLYTEAIKFFNHHESMVRIAVRTLTLNVYRVPDNH 199

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                           +   +G +   L    +  A  +
Sbjct: 200 MLTFILNKTTVPYLSNLVWFIGNQSIELDECVRNDADHL 238


>gi|328716886|ref|XP_001950310.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like
            [Acyrthosiphon pisum]
          Length = 1870

 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/179 (9%), Positives = 34/179 (18%), Gaps = 1/179 (0%)

Query: 61   LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            L      ++ L   K+   ++D    L              D  +G     +   L    
Sbjct: 1342 LACGHNSVWVLCRDKDKEFKMDSQYLLDKCREPCLQKLNCNDVCLGTCGECKQGRLHVPC 1401

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      N            P N   I     +               +     K  
Sbjct: 1402 SEICNKINPCNHTCKFPCKERCPPCNQKCIYSCVHSRCSKVCGQQCVPCKEKCEWKCKHL 1461

Query: 181  SGAL-EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
                  +    R         K+                      +++   ++ G E +
Sbjct: 1462 KCTRKCYDLCNRKPCYEPCSLKLKCGHECIGYCGEPCPPLCRICQEDEVTTIVFGNEDE 1520


>gi|257482401|ref|ZP_05636442.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 112

 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP 124
           VHQG+  + +P    
Sbjct: 67  VHQGVVADVSPSQVW 81


>gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54
           KI   K       +   R  +  +    K ++     +                 +++G 
Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           H V A L    R+I  L    N    +   A   +    K +  +    I+ K  VH G
Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIIPKRLKDKNALNILCKNGVHNG 219


>gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 160

 Score = 41.0 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +   I G E   L+ +  +      ++   G    +N++ +  V LY  
Sbjct: 99  YKHPPRAFYIFGPEDGTLKKEITDFCRDTIYVPTNG---CMNLAASVNVVLYDR 149


>gi|328716888|ref|XP_001949997.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like
            [Acyrthosiphon pisum]
          Length = 1820

 Score = 41.0 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 36/177 (20%), Gaps = 1/177 (0%)

Query: 61   LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            L     +++ L   K+   RLD    L              +  +G     +   +    
Sbjct: 1384 LACGHNQVWVLCCDKDKEFRLDSQYILDKCREPCLQKLNCNNICLGTCGECKQGRIHVPC 1443

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      N            P N   I     +               +        
Sbjct: 1444 SEICNKINPCNHTCKFPCKERCPPCNQKCIFSCLHSTCSRLCGNACVPCKEKCEWKCPHL 1503

Query: 181  SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAE 236
                +                    G + IG   +   PL +    DK    + G E
Sbjct: 1504 ECTRKCYEICNRRPCYKPCALKLICGHECIGFCGEPCPPLCRICPRDKVTTTVFGNE 1560


>gi|301100565|ref|XP_002899372.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262104016|gb|EEY62068.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 135

 Score = 41.0 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A    ++ + G  ++LN+S A A+ L
Sbjct: 2   LRAAHRRVYMPLFGFSESLNLSVATALVL 30


>gi|163804021|ref|ZP_02197833.1| rRNA methylase, SpoU family protein [Vibrio sp. AND4]
 gi|159172168|gb|EDP57090.1| rRNA methylase, SpoU family protein [Vibrio sp. AND4]
          Length = 27

 Score = 41.0 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 260 IKALNVSNAAAVALYITQNH 279
            ++LN+SNA A+  +     
Sbjct: 1   ARSLNLSNAVAIIAFEAWRQ 20


>gi|91775316|ref|YP_545072.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus
          KT]
 gi|91709303|gb|ABE49231.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus
          KT]
          Length = 53

 Score = 40.6 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 24 RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           R++  +K+++     +R   +     L G H ++A +  
Sbjct: 12 SRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYMEA 51


>gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score = 40.6 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                L LGAEGKGLR +T E    +  +   G 
Sbjct: 98  RRPAVLALGAEGKGLRQRTTECCDVLVRIDDRGS 131


>gi|289672600|ref|ZP_06493490.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 101

 Score = 40.6 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++  +   +     R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAPLLSP 124
           VHQG+  + +P    
Sbjct: 67  VHQGVVADVSPSQVW 81


>gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 221

 Score = 40.2 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQT 100
                L+GV     AL    R + +LL                        PV     Q 
Sbjct: 45  QRLERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQK 104

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRS 153
           +D + G + VHQG+ +E + L     D            QL +VL+ + DP N+GA++RS
Sbjct: 105 LDALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRS 163

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           A     D +IT++R S   + V++K+++GA+
Sbjct: 164 AYFLGVDRVITSRRNSCPLTPVVSKASAGAM 194


>gi|255099811|ref|ZP_05328788.1| putative RNA methylase [Clostridium difficile QCD-63q42]
          Length = 88

 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K  ++   KS++ ++     + G   V  AL   +   +  +  +    +   
Sbjct: 7   SKDNEKLKYTRALL-KSKNRNKESKFIIEGYRVVMLALECMANLDYVFINEEFENKKEHV 65

Query: 84  DANLPHPFPVKTVPPQTIDKI 104
                     +      I  +
Sbjct: 66  KLLEDLDKKTQRYTRLLIKTL 86


>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
 gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
          Length = 215

 Score = 40.2 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/131 (5%), Positives = 14/131 (10%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           I                   +               +   ++    I   L         
Sbjct: 5   IYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTC 64

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
                  ++         +       I                 W   T           
Sbjct: 65  IHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTC 124

Query: 221 EQEIKNDKIAL 231
                     L
Sbjct: 125 IHWWWWIFTCL 135



 Score = 38.3 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/133 (6%), Positives = 19/133 (14%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +    G              L               +   ++    I   +         
Sbjct: 15  LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 74

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
                  ++         +       I                 WG  T           
Sbjct: 75  LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 134

Query: 221 EQEIKNDKIALIL 233
                   + ++L
Sbjct: 135 LHWCSRGDLHMLL 147



 Score = 37.5 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 4/129 (3%), Positives = 8/129 (6%), Gaps = 1/129 (0%)

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                              +               +                     D  
Sbjct: 86  HWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWW-WWIFTCLHWCSRGDLH 144

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +    Y             G    I +                                 
Sbjct: 145 MLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCWGIFTCVHWCWGIFTCIHWWWW 204

Query: 223 EIKNDKIAL 231
                    
Sbjct: 205 IFTCLHWCW 213



 Score = 36.0 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 6/124 (4%), Positives = 14/124 (11%)

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                        L               +   ++    I   +                
Sbjct: 2   FTCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 61

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           ++         +       I                 WG  T                  
Sbjct: 62  FTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 121

Query: 228 KIAL 231
              +
Sbjct: 122 FTCI 125


>gi|322497647|emb|CBZ32721.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 489

 Score = 39.8 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +LGAE   L     +     +  +   G   ++N++    V LY  
Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 447


>gi|322489661|emb|CBZ24920.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 508

 Score = 39.8 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +LGAE   L     +     +  +   G   ++N++    V LY  
Sbjct: 421 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 466


>gi|146081402|ref|XP_001464243.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068334|emb|CAM66621.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 489

 Score = 39.8 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +LGAE   L     +     +  +   G   ++N++    V LY  
Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 447


>gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group]
          Length = 783

 Score = 39.8 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTV 96
            R  S     ++ GV+ V++++ N +  + ++L     KN       +        V+ V
Sbjct: 380 PRSRSAEGQ-WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARRKGIDVRKV 438

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGA 149
             Q +D  VG    HQG+A   A   + + +             LL+VLD V DPHN+GA
Sbjct: 439 NSQALDG-VGGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGA 497

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
            LRSA A     +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G   
Sbjct: 498 CLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWI 557

Query: 210 IGLSSDSKKPLEQEIKNDKIALI 232
            GL+ ++   L Q      IALI
Sbjct: 558 YGLAGEATASLYQLDLKGNIALI 580


>gi|156083591|ref|XP_001609279.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154796530|gb|EDO05711.1| conserved hypothetical protein [Babesia bovis]
          Length = 285

 Score = 39.8 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 5/165 (3%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           IF       A   R +   K +      S +    +   +     +   L +       +
Sbjct: 95  IFHPNPLCVATPSRKNAIIKHLWRLRVNSSYRKHQDTRLVTSGDVILHMLRHTDCVFGNI 154

Query: 72  LATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T+ +L  L     +       ++ +    +   +   +       E            
Sbjct: 155 FTTRKSLVELILGDSSLRSRFGRIQLLDRHLLRYCLRGTSTTSDSIAEVTIPNP---SIP 211

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            N ++++ LD++  P N+G I+R A+  + DGI   +  +     
Sbjct: 212 SNPRVVIALDNIRYPQNVGNIIRIAIGLNVDGIYYLRGTADPFDW 256


>gi|254884406|ref|ZP_05257116.1| malic enzyme [Bacteroides sp. 4_3_47FAA]
 gi|294778121|ref|ZP_06743552.1| malate dehydrogenase (oxaloacetate-decarboxylating) [Bacteroides
           vulgatus PC510]
 gi|319642468|ref|ZP_07997119.1| NADP-dependent malate dehydrogenase [Bacteroides sp. 3_1_40A]
 gi|254837199|gb|EET17508.1| malic enzyme [Bacteroides sp. 4_3_47FAA]
 gi|294447980|gb|EFG16549.1| malate dehydrogenase (oxaloacetate-decarboxylating) [Bacteroides
           vulgatus PC510]
 gi|317385924|gb|EFV66852.1| NADP-dependent malate dehydrogenase [Bacteroides sp. 3_1_40A]
          Length = 761

 Score = 39.4 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 21/262 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58
           M     +K+  I   + ++  +LR       K+     ++        +F  G+H   + 
Sbjct: 400 MESGVARKN--ITDWE-AYKTRLRELMGQESKLTRQLYETARRDPQRVVFAEGIHPTMLK 456

Query: 59  AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108
           AA+   +  I    LL     + +L  + +L      +  +         +   +I+ ++
Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              QG  L+ +       +      +                  +         I  +  
Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 +L             I     TD L  +     +T+   + +         N  
Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634

Query: 229 IALILGAEGKGLRPKTQETATS 250
                G++ +G   K  +    
Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652


>gi|150002845|ref|YP_001297589.1| malic enzyme [Bacteroides vulgatus ATCC 8482]
 gi|149931269|gb|ABR37967.1| NADP-dependent malate dehydrogenase [Bacteroides vulgatus ATCC
           8482]
          Length = 761

 Score = 39.4 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 21/262 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58
           M     +K+  I   + ++  +LR       K+     ++        +F  G+H   + 
Sbjct: 400 MESGVARKN--ITDWE-AYKTRLRELMGQESKLTRQLYETARRDPQRVVFAEGIHPTMLK 456

Query: 59  AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108
           AA+   +  I    LL     + +L  + +L      +  +         +   +I+ ++
Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              QG  L+ +       +      +                  +         I  +  
Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 +L             I     TD L  +     +T+   + +         N  
Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634

Query: 229 IALILGAEGKGLRPKTQETATS 250
                G++ +G   K  +    
Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652


>gi|212690731|ref|ZP_03298859.1| hypothetical protein BACDOR_00218 [Bacteroides dorei DSM 17855]
 gi|265754399|ref|ZP_06089588.1| malic enzyme [Bacteroides sp. 3_1_33FAA]
 gi|212666705|gb|EEB27277.1| hypothetical protein BACDOR_00218 [Bacteroides dorei DSM 17855]
 gi|263235108|gb|EEZ20663.1| malic enzyme [Bacteroides sp. 3_1_33FAA]
          Length = 761

 Score = 39.4 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 74/262 (28%), Gaps = 21/262 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58
           M     +K+  I + + ++  +LR       K+     ++   +    +F  G+H   + 
Sbjct: 400 MESGVARKN--ITNWE-AYKTRLRELMGQESKLTRQLYETARRAPQRVVFAEGIHPTMLK 456

Query: 59  AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108
           AA+   +  I    LL     + +L  + +L      +  +         +   +I+ ++
Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              QG  L+ +       +      +                  +         I  +  
Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 +L             I     TD L  +     +T+   + +         N  
Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634

Query: 229 IALILGAEGKGLRPKTQETATS 250
                G++ +G   K  +    
Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652


>gi|157866535|ref|XP_001687659.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125273|emb|CAJ02933.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 488

 Score = 39.4 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 229 IALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  ILGAE   L     +     +  +   G   ++N++    V LY  
Sbjct: 401 VFYILGAEDGTLSAHHVQHDVDDVVFIPTTG---SMNLAATVNVLLYDR 446


>gi|120611002|ref|YP_970680.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589466|gb|ABM32906.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 162

 Score = 39.4 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q +  ++   ILG E   L  +  +    +  +        +N++    V LY  
Sbjct: 88  QFVHPERAFYILGPEDGSLPAEIVQQCRHVVFVPTRF---CMNLAATVNVLLYDR 139


>gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
 gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
          Length = 171

 Score = 39.4 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   +  +       + ++        +N++ A  V LY  
Sbjct: 111 FKHPESAFYIFGPEDGSVPNQIVAKCRDVVYVPT---AYCMNLAAAVNVLLYDR 161


>gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
 gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
          Length = 172

 Score = 39.4 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    I G E   +  +       + ++        +N++ A  V LY  
Sbjct: 112 FKHPESAFYIFGPEDGSVPNQIVAKCRDVVYVPT---AYCMNLAAAVNVLLYDR 162


>gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
 gi|118570387|gb|ABL05138.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
          Length = 154

 Score = 39.1 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKA 262
                 L+ G E  GL   T   A       + M    ++
Sbjct: 91  FRPGDVLMFGPEPTGLHAATLADAHITQQVRIPMLAGRRS 130


>gi|291278680|ref|YP_003495515.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290753382|dbj|BAI79759.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 421

 Score = 39.1 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVAL 273
               + L+ G  G G      E    +   +        L+V +A A+ L
Sbjct: 367 FEKPVLLLFGT-GWGFSDDMLEVCDYILERIKGYDEFNHLSVRSAVAIIL 415


>gi|237709768|ref|ZP_04540249.1| malic enzyme [Bacteroides sp. 9_1_42FAA]
 gi|237725081|ref|ZP_04555562.1| malic enzyme [Bacteroides sp. D4]
 gi|229436347|gb|EEO46424.1| malic enzyme [Bacteroides dorei 5_1_36/D4]
 gi|229456404|gb|EEO62125.1| malic enzyme [Bacteroides sp. 9_1_42FAA]
          Length = 761

 Score = 39.1 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 73/262 (27%), Gaps = 21/262 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT--VS 58
           M     +K+  I   + ++  +LR       K+     ++   +    +F  G+H   + 
Sbjct: 400 MESGVARKN--ITDWE-AYKTRLRELMGQESKLTRQLYETARRAPQRVVFAEGIHPTMLK 456

Query: 59  AALNNPSRKIF--QLLATKNALARLDWDANL-PHPFPVKTV-------PPQTIDKIVGKE 108
           AA+   +  I    LL     + +L  + +L      +  +         +   +I+ ++
Sbjct: 457 AAVEAKAEGICHPILLGNDERIEKLAKELDLSLEGIEIINLRHDREAERRERYARILSEK 516

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              QG  L+ +       +      +                  +         I  +  
Sbjct: 517 RARQGANLQESNDKMFERNYFGMMMVETGEADAFITGLYTKYSNTIKVAKEVIGIQPEYK 576

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 +L             I     TD L  +     +T+   + +         N  
Sbjct: 577 HFGTMHILNSKKGTYFVADTLINRHPDTDTLIDIAKLSKKTVEFFNHTPTMAMLSYSN-- 634

Query: 229 IALILGAEGKGLRPKTQETATS 250
                G++ +G   K  +    
Sbjct: 635 ----FGSDTEGSPAKVHDAVDY 652


>gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score = 39.1 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277
              ++  +    +I++L+VS+AA + L   Y  +
Sbjct: 405 QCDAVCSIPTGRLIESLSVSHAAVIILSQYYQAR 438


>gi|209966010|ref|YP_002298925.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209959476|gb|ACJ00113.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 188

 Score = 39.1 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 10/35 (28%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                + A +LG E   L P        +  +   
Sbjct: 91  FRHPLRAAYVLGPERGSLSPAMVARCDHIVRIPTK 125


>gi|220931578|ref|YP_002508486.1| hypothetical protein Hore_07340 [Halothermothrix orenii H 168]
 gi|219992888|gb|ACL69491.1| uncharacterized protein conserved in bacteria [Halothermothrix
           orenii H 168]
          Length = 193

 Score = 38.7 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKALNVS 266
           Q     S  K         D   +I G  G GL  +T      +   ++  G    L+V 
Sbjct: 118 QFSNSISYKKMREVIFNSPDPYLIIFGT-GWGLTEETINKCDYILEPIYGRGEFNHLSVR 176

Query: 267 NAAAVAL 273
           +AA++ L
Sbjct: 177 SAASIIL 183


>gi|326331861|ref|ZP_08198148.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950358|gb|EGD42411.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score = 38.7 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 38/166 (22%), Gaps = 10/166 (6%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             E  H    L         +D  R   L  ++  ++   +   +         +     
Sbjct: 34  WPEGDHWDPELLANGDRRNVVDRYRYWSLEAIVADLDQRRHGFHVAIENWQHDFNIGTIV 93

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------- 217
           +  +   +A +    +        +                        D +        
Sbjct: 94  RTANAFLAAEVHIVGNRRWNRRGAMVTDRYQHVHHHPDVPALAAYLHERDVRLLGIDNLP 153

Query: 218 --KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               LE       +  + G EG GL  + + +      +   G  +
Sbjct: 154 GSLHLETMELPRSVCFLFGQEGPGLSEQARASVDGTFSIAQFGSTR 199


>gi|28211985|ref|NP_782929.1| DNA helicase [Clostridium tetani E88]
 gi|28204428|gb|AAO36866.1| DNA helicase [Clostridium tetani E88]
          Length = 639

 Score = 38.7 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSA 59
           M+ I    ++ I +  +    KLR ++   +K++ +   S    +     +      +  
Sbjct: 184 MSNILSAANDVIKNNSNRKVKKLRTSNSQGEKVKVYRANSDI--EEAQFVINEIKKLIKE 241

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV------PPQTIDKIVGKEAVHQG 113
              N + K F +L   NA +R+  +  + +  P K V        + I  I+    +   
Sbjct: 242 --ENRTPKDFSILYRTNAQSRIFEEVFMRNKIPYKIVGGLKFYDRKEIKDIMAYLKLINN 299

Query: 114 LALET 118
              + 
Sbjct: 300 PLDDV 304


>gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis]
          Length = 451

 Score = 38.3 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---------ARLDWDANLPHPFPVKTVPPQT 100
            LYGV  V AAL    R +  L   +             +            V       
Sbjct: 290 VLYGVSPVLAALQAGRRAVHTLYLQEGMDLAKRKDKGAIQAAKQRAEELGARVLYASKHD 349

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----------QLLMVLDHVNDPHNIGAI 150
           ++ +V     HQG+ L+ +PL    +  +  +           + + LD V DP N GA 
Sbjct: 350 LN-MVADNRPHQGVVLDCSPLEFEPMSELPAAPAAPPPGGRLPVWLCLDEVMDPQNFGAA 408

Query: 151 LRSAVAFSCDGIITTKRY 168
           LRSA      G++T  R 
Sbjct: 409 LRSAHFLGVAGVLTCHRN 426


>gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
 gi|183174511|gb|ACC39621.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
          Length = 154

 Score = 38.3 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 225 KNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKA 262
                 L+ G E  GL   T   A       + M    ++
Sbjct: 91  FRPGDVLMFGPEPTGLDAATLADAHITQQVRIPMLAGRRS 130


>gi|325002553|ref|ZP_08123665.1| RNA methyltransferase CspR [Pseudonocardia sp. P1]
          Length = 153

 Score = 38.3 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 2/132 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P N G ++R A     +  +        +   + ++     E    +  
Sbjct: 1   MFRLALHTPEIPPNTGNVIRLAANTGAELHLIRPLGFSLDERAVRRAGLDYGELADVVVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           +        +   G +    ++ +         +    L+ G E  GL       A  T 
Sbjct: 61  AGTDAFAAWVADAGARVYAFTTGAPVRYTDVAYSPGDVLLFGRESTGLPADVAGAAWVTG 120

Query: 251 MAHLHMPGIIKA 262
              L M    ++
Sbjct: 121 RVALPMRPSNRS 132


>gi|150021667|ref|YP_001307021.1| hypothetical protein Tmel_1801 [Thermosipho melanesiensis BI429]
 gi|149794188|gb|ABR31636.1| Uncharacterized protein-like protein [Thermosipho melanesiensis
           BI429]
          Length = 188

 Score = 38.3 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           M +         +  +        +  + ++ G  G G+  +  E         + G   
Sbjct: 109 MFTSAKWRDNTITFEEGRKIILETSRPVLILFGT-GWGMPDEILEQCDYALE-PVRGRSD 166

Query: 262 ALN-VSN--AAAVAL 273
             N +S   A A+ L
Sbjct: 167 -FNHLSVRAAVAIIL 180


>gi|71032049|ref|XP_765666.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352623|gb|EAN33383.1| hypothetical protein TP01_0139 [Theileria parva]
          Length = 315

 Score = 38.3 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 2/155 (1%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K  R +   + +      S +    +   + G + +   L +   +   +L T   L   
Sbjct: 137 KPIRKNPVLRHIWKLRVSSAYRRGIQKRLVVGSNIIRHILTHTEARFDTILTTNKELIDF 196

Query: 82  DWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                L       ++ V   T+   +         +   A    PT +     + ++ +D
Sbjct: 197 VLSNPLLNCRYSRIQLVDRYTLQYCLRGTTHSYLSSDAIADAAIPTPNTNITPRFVVAID 256

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           ++    NIG+I+R+++AF  D +      +   + 
Sbjct: 257 NLKYARNIGSIIRTSLAFGVDLLFYLNGTTDPFNW 291


>gi|46579249|ref|YP_010057.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603188|ref|YP_967588.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|85543858|sp|Q72DU3|TRMD_DESVH RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase
 gi|46448663|gb|AAS95316.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563417|gb|ABM29161.1| tRNA (Guanine37-N(1)-) methyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311233078|gb|ADP85932.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 425

 Score = 38.3 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVAL 273
             + L+ G  G GL P+  E   ++    +        L+V  AAA+ +
Sbjct: 371 RPVLLVFGT-GHGLAPEVLEGCDAILR-PLRWMDGYNHLSVRAAAAIIM 417


>gi|213861079|ref|ZP_03385783.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 225

 Score = 38.3 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 7/125 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCD 160
            F   
Sbjct: 220 HFGVK 224


>gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
 gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
          Length = 724

 Score = 37.9 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I +  +E I    +    +L   + + K +  +   + + +        G   +  A+
Sbjct: 290 KRILQAANEVIEHNVNRKPKRLWTENPEGKPITYYE--AMNEADEAQFVA-GR--IQEAI 344

Query: 62  NNPSRKI--FQLLATKNALARLDWDANLPHPFPVKTV------PPQTIDKIVGKEAV 110
            + +R+   F +L   NA +R+  +  L    P + V        + I  I+    V
Sbjct: 345 ESGARRYSDFAVLYRTNAQSRVIEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRV 401


>gi|256255516|ref|ZP_05461052.1| hypothetical protein BcetB_14773 [Brucella ceti B1/94]
          Length = 26

 Score = 37.9 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 255 HMPGIIKALNVSNAAAVAL 273
            M     +LNV+ A+ +AL
Sbjct: 1   PMSKTFDSLNVATASGIAL 19


>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 724

 Score = 37.9 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
             I +  +E I    +    +L   + + K +  +   + + +        G   +  A+
Sbjct: 290 KRILQAANEVIEHNVNRKPKRLWTENPEGKPITYYE--AMNEADEAQFVA-GR--IQEAI 344

Query: 62  NNPSRKI--FQLLATKNALARLDWDANLPHPFPVKTV------PPQTIDKIVGKEAV 110
            + +R+   F +L   NA +R+  +  L    P + V        + I  I+    V
Sbjct: 345 ESGARRYSDFAVLYRTNAQSRVIEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRV 401


>gi|289426657|ref|ZP_06428386.1| conserved domain protein [Propionibacterium acnes J165]
 gi|289160152|gb|EFD08327.1| conserved domain protein [Propionibacterium acnes J165]
          Length = 118

 Score = 37.9 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALN 62
           + K  ++++    ++ AK        K  ++  +K  +         ++ G + V  AL+
Sbjct: 35  TPKAEDRVYH--KAYKAKQE------KLARAAARKPANRQSTGAGPEWVIGRNPVLEALH 86

Query: 63  NPSRKIFQLLATKNALARLDWDANL 87
                +      + A       A L
Sbjct: 87  AG-LPVRTAYVAEGAEHDSRLRAIL 110


>gi|154249337|ref|YP_001410162.1| uncharacterized protein-like protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153273|gb|ABS60505.1| uncharacterized protein-like protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 190

 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
             + L+ G  G G+  + ++         + G     N +S   A A+ L
Sbjct: 134 RPVLLLFGT-GWGMPKELEDMCDYSLE-PIRGKSD-FNHLSVRAAVAIIL 180


>gi|322488285|emb|CBZ23531.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 545

 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 218 KPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHL 254
              +       +  L+LG E  GL P   +  T +AH+
Sbjct: 391 CAQQPSSYPPPVRVLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|154345418|ref|XP_001568646.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065988|emb|CAM43772.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 367

 Score = 37.5 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I K K     + +++   +L+   R  K+ +    + +   + E     G   V   +
Sbjct: 94  KVIIKAKRVLTEAEREAKVMELQERVRRNKEEERLELQRKERERLEM----GRRMVR--M 147

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            N   ++ + +  + A      D        ++ +  +
Sbjct: 148 KNEMEEVRRKMNVEEAQRENAADLEAKRRVKIQIIADR 185


>gi|146071500|ref|XP_001463133.1| hypothetical protein [Leishmania infantum]
 gi|134067216|emb|CAM65483.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322496565|emb|CBZ31635.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 545

 Score = 37.5 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHL 254
            L+LG E  GL P   +  T +AH+
Sbjct: 404 VLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|157864216|ref|XP_001680820.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124112|emb|CAJ02095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 545

 Score = 37.5 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHL 254
            L+LG E  GL P   +  T +AH+
Sbjct: 404 VLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|304393773|ref|ZP_07375699.1| tRNA/rRNA methyltransferase [Ahrensia sp. R2A130]
 gi|303294116|gb|EFL88490.1| tRNA/rRNA methyltransferase [Ahrensia sp. R2A130]
          Length = 38

 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)

Query: 249 TSMAHLHM-PGIIKALNVS-NAAAVALYITQN 278
               +L M    +++LN++  A AV  Y    
Sbjct: 3   DRTFNLPMLNPAVRSLNLANVATAVV-YQAMR 33


>gi|281349587|gb|EFB25171.1| hypothetical protein PANDA_011681 [Ailuropoda melanoleuca]
          Length = 1054

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 40  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 99

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 100 VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 154

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 155 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 214

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 215 YIRDKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHL 266


>gi|149725987|ref|XP_001490269.1| PREDICTED: similar to KIAA0350 protein [Equus caballus]
          Length = 1046

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|148664905|gb|EDK97321.1| RIKEN cDNA 4932416N17, isoform CRA_a [Mus musculus]
          Length = 1018

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|119605571|gb|EAW85165.1| KIAA0350 protein, isoform CRA_b [Homo sapiens]
          Length = 1051

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|323668269|ref|NP_001191158.1| protein CLEC16A isoform 2 [Mus musculus]
 gi|74142732|dbj|BAE33899.1| unnamed protein product [Mus musculus]
 gi|151357762|emb|CAO77982.1| novel protein [Mus musculus]
          Length = 1034

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|159463572|ref|XP_001690016.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284004|gb|EDP09754.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 284

 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           +   GII++LNV    A+ALY    
Sbjct: 236 IDKRGIIRSLNVHVTGAIALYDYVR 260


>gi|327259584|ref|XP_003214616.1| PREDICTED: cytosolic phospholipase A2 epsilon-like [Anolis
           carolinensis]
          Length = 665

 Score = 37.1 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 63/230 (27%), Gaps = 13/230 (5%)

Query: 6   KKK--SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF----LYGVHTVSA 59
            KK  SE+I   K  H  K +R++   ++++ +N++     +         L+G   V  
Sbjct: 232 SKKDLSEQINEAKR-HVTKSKRDNFSIERLKYYNRQLHQRKEEGQRTSCIDLWG--LVIE 288

Query: 60  ALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            L N  +   +L   ++A+      L     +       T+  +   +    E       
Sbjct: 289 YLLNDGKDNHKLSDEQHAVNEGQNPLPIYTAINVKEKYSTMDFKEWMEFTPYEVGILKYG 348

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                    +   +      +    +     + + + S        ++ +      +   
Sbjct: 349 AYVKAEDFGSEFFMGRLIKRLPETRLCYMQGMWSSIFSVNLLYFWSLVHSSEEFWHKWTH 408

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              +       +P       T        +      + ++     +    
Sbjct: 409 DQITDIDEEPQLPSRLHEQKTQLCTPAGPFSCAFRDVLTNRLSIAQYHNF 458


>gi|198277236|ref|ZP_03209767.1| hypothetical protein BACPLE_03448 [Bacteroides plebeius DSM 17135]
 gi|198269734|gb|EDY94004.1| hypothetical protein BACPLE_03448 [Bacteroides plebeius DSM 17135]
          Length = 1477

 Score = 37.1 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 38/182 (20%)

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      + TV             +              ++      ++    + V
Sbjct: 262 IEYLKSLKQVLIATVSDGFFLYHTDNGDIQHFPPSLLLEAPVESVFMDSTGEIWFEQNIV 321

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +  +      +          T    S     +    A     H      S        
Sbjct: 322 GEVAHFNPYHLTVKCEKVYVEPTYTDRSRPAFHIHEDKAGQLWVHPYGGGFSYFDRKHNC 381

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +  +     G        +     + +  L +G   KGL   T  T      + +    +
Sbjct: 382 LRPFYNSMTGNGWRFSNKIHSAFSDKQGNLWMGTHSKGLEKATFRTEHFKLRIPVDTPYE 441

Query: 262 AL 263
           +L
Sbjct: 442 SL 443


>gi|289668560|ref|ZP_06489635.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 180

 Score = 37.1 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           LYG++ V A        + +L  ++  + +        +      + V    + K+    
Sbjct: 56  LYGINAVQAVFKARPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVEEADLGKLAA-S 114

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           A H+G+  E   +   +L        +   L + LD V +PHN GA+LRS+  F
Sbjct: 115 AHHEGIVAEVLRVTPQSLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHF 168


>gi|329664412|ref|NP_001192645.1| NFX1-type zinc finger-containing protein 1 [Bos taurus]
 gi|297482109|ref|XP_002692544.1| PREDICTED: regulator of nonsense transcripts 1-like [Bos taurus]
 gi|296480971|gb|DAA23086.1| regulator of nonsense transcripts 1-like [Bos taurus]
          Length = 1918

 Score = 37.1 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/177 (8%), Positives = 36/177 (20%), Gaps = 10/177 (5%)

Query: 70   QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            +L        +     +L H  PV+         I+       G                
Sbjct: 1407 KLKCGHRQQMKCGNVEDLKHGLPVQCTTK--CGSILDCGHPCPGSCHSCFEGRFHERCQQ 1464

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               +LL+      +P          +  +       K+          +       H   
Sbjct: 1465 PCKRLLICSHKCQEPCTGECPPCQRICQNRCVHSQCKKKCGELCTPCMEPCIWRCRHYQC 1524

Query: 190  IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------LILGAEGK 238
             R+ +        +    + +           +                +  G+E +
Sbjct: 1525 TRLCSEPCDRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCHQEEVTQIFFGSEDE 1581


>gi|34541181|ref|NP_905660.1| hypothetical protein PG1516 [Porphyromonas gingivalis W83]
 gi|34397497|gb|AAQ66559.1| hypothetical protein PG_1516 [Porphyromonas gingivalis W83]
          Length = 458

 Score = 36.7 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           + S+ E + + G+H     L N   K   L+   +    ++   +L      + V  +T 
Sbjct: 349 YRSRREKIIIEGMHLTEDFLRN-INKQDCLIIGLDNKRDINDRLDLKMKTTREEVSKKTE 407

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           D+      +H G+           ++   
Sbjct: 408 DEKKRINEIHYGIIECCKRNNFKVVEFQD 436


>gi|289208443|ref|YP_003460509.1| isocitrate dehydrogenase, NADP-dependent [Thioalkalivibrio sp.
           K90mix]
 gi|288944074|gb|ADC71773.1| isocitrate dehydrogenase, NADP-dependent [Thioalkalivibrio sp.
           K90mix]
          Length = 418

 Score = 36.7 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 238 KGLRPKTQETA-TSMAHL------HMPGIIKALNVS 266
            GL  +T E        +       + G  ++LNV+
Sbjct: 84  SGLPEETLEAVKDYRVSIKGPLTTPVGGGFRSLNVA 119


>gi|145640975|ref|ZP_01796557.1| hypothetical protein CGSHiR3021_07897 [Haemophilus influenzae
           R3021]
 gi|145274489|gb|EDK14353.1| hypothetical protein CGSHiR3021_07897 [Haemophilus influenzae
           22.4-21]
          Length = 64

 Score = 36.7 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKSRW 64


>gi|74218044|dbj|BAE42005.1| unnamed protein product [Mus musculus]
          Length = 912

 Score = 36.7 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDNCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|328721752|ref|XP_001946566.2| PREDICTED: NFX1-type zinc finger-containing protein 1-like
            [Acyrthosiphon pisum]
          Length = 2052

 Score = 36.7 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 37/179 (20%), Gaps = 1/179 (0%)

Query: 61   LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            L     ++      K+   RLD    L              D   G     +   L    
Sbjct: 1514 LACGHTEVCVWCCDKDKEFRLDSQYLLDKCREPCQQNLNCGDICSGTCGQCKQGRLHVPC 1573

Query: 121  LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                      N            P +   I     +               +        
Sbjct: 1574 SEVCNKINPCNHTCKFPCKERCPPCDQKCIYSCVHSKCPRKCGNECVPCMEKCEWECLHL 1633

Query: 181  SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGK 238
                +           +        G + IG   +   PL +  + ++   +I G E +
Sbjct: 1634 KCTKKCNEICDRKPCYEPCTLKLKCGHECIGFCGEPCPPLCRICQQEEVTTIIFGDEDE 1692


>gi|319949973|ref|ZP_08023962.1| tRNA/rRNA methyltransferase (SpoU) [Dietzia cinnamea P4]
 gi|319436369|gb|EFV91500.1| tRNA/rRNA methyltransferase (SpoU) [Dietzia cinnamea P4]
          Length = 137

 Score = 36.7 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVG 106
               G ++V AAL   +    +L  T+ AL R     DA       V  V  + I  +  
Sbjct: 42  FLAEGANSVEAALATGAAV--ELFCTEAALDRFADLVDAGRSAGVAVSVVTDRAIRGLSD 99

Query: 107 KEAV 110
               
Sbjct: 100 TVTP 103


>gi|332671739|ref|YP_004454747.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340777|gb|AEE47360.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 246

 Score = 36.7 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   L+LG E  GL    +  A  + H+   G  +++N
Sbjct: 183 YPLPRACVLLLGQESVGLSDAARAAAVDVLHIAQFGSTRSIN 224


>gi|114660986|ref|XP_001140971.1| PREDICTED: similar to KIAA0350 protein isoform 1 [Pan troglodytes]
          Length = 882

 Score = 36.7 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|285019046|ref|YP_003376757.1| hypothetical protein XALc_2284 [Xanthomonas albilineans GPE PC73]
 gi|283474264|emb|CBA16765.1| hypothetical protein XALc_2284 [Xanthomonas albilineans]
          Length = 35

 Score = 36.7 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +GAE   +     +       +   G +++L
Sbjct: 1   MGAERDSMDRSFAQACDLRLSIPGSGALESL 31


>gi|114660982|ref|XP_001141217.1| PREDICTED: similar to KIAA0350 protein isoform 3 [Pan troglodytes]
          Length = 940

 Score = 36.7 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|114660984|ref|XP_001141058.1| PREDICTED: similar to KIAA0350 protein isoform 2 [Pan troglodytes]
          Length = 923

 Score = 36.7 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|66822149|ref|XP_644429.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
 gi|66822933|ref|XP_644821.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
 gi|60472552|gb|EAL70503.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
 gi|60472836|gb|EAL70785.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
          Length = 306

 Score = 36.7 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 227 DKIALILGAEGKGLRPKTQETAT 249
             IA+I+G E  G+  +  E   
Sbjct: 278 HPIAIIMGNEIAGMSDEAIELCD 300


>gi|23011594|ref|ZP_00051908.1| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 175

 Score = 36.7 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 35/115 (30%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G +LR A        I            L +S    L+H+   R 
Sbjct: 1   MLRLALYQPDIPQNTGTMLRMAACLGVAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +           G + +  ++    P       D   L++G E  G+       
Sbjct: 61  RSWDAFEAWRREAGIRLVLATTRGSVPYTDHAFRDGDCLMMGRESAGVPEPVHAA 115


>gi|86577656|gb|AAI12898.1| CLEC16A protein [Homo sapiens]
          Length = 906

 Score = 36.4 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|114660988|ref|XP_510815.2| PREDICTED: similar to KIAA0350 protein isoform 7 [Pan troglodytes]
          Length = 906

 Score = 36.4 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|313639758|gb|EFS04508.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
          FSL S4-171]
          Length = 57

 Score = 36.4 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 43 TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTV 96
            + E  ++ G + V   L +  R I ++   +     +              V+ V
Sbjct: 2  EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFV 57


>gi|114660990|ref|XP_001141384.1| PREDICTED: similar to KIAA0350 protein isoform 5 [Pan troglodytes]
          Length = 779

 Score = 36.4 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
             + +  T Q  NL +  + +++  L    +    +           +  N+      + 
Sbjct: 33  LTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRY 92

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  Q +  +           +     L   L     + +++     +D   +   +    
Sbjct: 93  VCVQLLQTL-----NILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLK 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             S      T  +  +E        + A++   +              +           
Sbjct: 148 TLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLH 207

Query: 216 SKKPLEQEIKNDKIALILGA-------------EG--KG-LRPKTQETATSM 251
             +          +   +G+             E   +G L     E    +
Sbjct: 208 YIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHL 259


>gi|145534185|ref|XP_001452837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420536|emb|CAK85440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 579

 Score = 36.4 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 6   KKKSEKIFSLKDSHY-----AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           K+  E+I  LK S        +L+R+    ++++   Q        +         V  A
Sbjct: 269 KRSRERIEELKKSREYLEQLEELKRSREKIEQLEELRQSRERLQDLKK-----SREVQEA 323

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           L N   KI  L  ++  L  L       +         Q ++++
Sbjct: 324 LKNSGEKIQDLQKSRERLEELKKSRERLNQLEELRKSRQQMEEL 367


>gi|297520721|ref|ZP_06939107.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 60

 Score = 36.4 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLD 59


>gi|253582217|ref|ZP_04859440.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium varium ATCC
           27725]
 gi|251835756|gb|EES64294.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium varium ATCC
           27725]
          Length = 191

 Score = 36.4 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
           +    L+ G  G GL  +  + +  +    + G  +  N +S   A A+ L
Sbjct: 137 DRPYLLLFGT-GWGLTDEIMDMSDYILE-PIRGNTR-YNHLSVRAAVAIIL 184


>gi|120437612|ref|YP_863298.1| hypothetical protein GFO_3288 [Gramella forsetii KT0803]
 gi|117579762|emb|CAL68231.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 562

 Score = 36.0 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLF--LY--GVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R + ++     K      P+     ++  G   +  A+ N  R I      +  L     
Sbjct: 195 RTFHEISKLYPKFSTPENPDRFLNVVWSLGKMAIREAIQNEKRIITFSPVLRERLGHHIH 254

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                +   +K +  + +D+ +   + +    + T     
Sbjct: 255 GEIWSNDIKLKLIENKLMDRPIHIISANMHSVMNTLYTPC 294


>gi|257469514|ref|ZP_05633606.1| hypothetical protein FulcA4_09258 [Fusobacterium ulcerans ATCC
           49185]
 gi|317063758|ref|ZP_07928243.1| tRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689434|gb|EFS26269.1| tRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 187

 Score = 36.0 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
           +    L+ G  G GL  +  + +  +    + G  +  N +S   A A+ L
Sbjct: 133 DRPYLLLFGT-GWGLTDEIMDMSDYILE-PIRGNTR-YNHLSVRAAVAIIL 180


>gi|37931730|gb|AAP69228.1| guanosine-2'-O-methyltransferase [Torulaspora delbrueckii]
          Length = 158

 Score = 36.0 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPEN------LFLYGVHTVSAALNNP 64
           F  K +H  KL +  +  K  +  +++   + ++           ++YG + V AAL   
Sbjct: 75  FGKKKAHTDKLAQIDKQTKNERQEHERKFEKRSATQGLRVNPLMEYVYGTNGVLAALQGG 134

Query: 65  SRKIFQLLATKNALARLDWDANLP 88
            R+ F  L     L          
Sbjct: 135 KREYFTRLLHHGPLPTTIAQLAEK 158


>gi|296132477|ref|YP_003639724.1| glycosyl transferase family 2 [Thermincola sp. JR]
 gi|296031055|gb|ADG81823.1| glycosyl transferase family 2 [Thermincola potens JR]
          Length = 539

 Score = 36.0 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/205 (8%), Positives = 49/205 (23%), Gaps = 25/205 (12%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRH--------TSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
            K RR +R  K+     + S +         ++ +             L +  + I + +
Sbjct: 289 KKKRRENRQIKRENWQRKSSGNKLTLSMIVRNEADRYLA-------RVLAHARQYIDEAV 341

Query: 73  ATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
              +A      D    +    P+  +  +         +               T+    
Sbjct: 342 IIDDASIDNTADICREILQGIPLTLITQKR--------STFSTEYRLRKKQWRETVKTNP 393

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +  L++  D + +   +  + +       D           E          A +     
Sbjct: 394 DWILILDADEMFEDKVVAEMPKLINQTEFDYYAFRLYDFWDEEHYREDKFWQAHKVYRPF 453

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD 215
            +  +   + K             +
Sbjct: 454 LVRYIPGFVYKWLETPQHCGRFPCN 478


>gi|156095346|ref|XP_001613708.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802582|gb|EDL43981.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 824

 Score = 36.0 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 46/196 (23%), Gaps = 12/196 (6%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL N  R +F+     +   R            V          ++ +E     +   
Sbjct: 624 EEALKNIDRPLFKDF--WDRYVRCIKILKKRKERTVFRFTLVKEYNMMSEE-----ILSY 676

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T  +     D +    +            +  I      +     +       S+S  +A
Sbjct: 677 TKLIEYGYPDFIEIKAVTYCGSSDGYQLTMKNIPWHEEVYQFAYNLVHSNGYLSDSYEIA 736

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                +   +   +   + D       +      +  +                ++GAE 
Sbjct: 737 CEHRHSCSILIAKKKFKINDKWHTWIDYDMFQWLVRQNKDFTAVDYCAETPAWAVMGAEE 796

Query: 238 KGLRPKTQETATSMAH 253
           +G  P          +
Sbjct: 797 RGFNP-----CDERVY 807


>gi|213583759|ref|ZP_03365585.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 216

 Score = 35.6 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
            + K  G E  H G+          T+        +   ++ L+ V +PHN+G ++R
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMR 216


>gi|156352506|ref|XP_001622790.1| hypothetical protein NEMVEDRAFT_v1g139805 [Nematostella vectensis]
 gi|156209407|gb|EDO30690.1| predicted protein [Nematostella vectensis]
          Length = 1761

 Score = 35.6 bits (80), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/174 (7%), Positives = 26/174 (14%), Gaps = 15/174 (8%)

Query: 91   FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               +T     +  +            +                  +   H          
Sbjct: 1252 VKCRTPCNAKLKCLHTCAGNCNSCLQQRVH-----EQCKSKCDRTLFCGHSCQEPCTKNC 1306

Query: 151  LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
                         +  +    E  V                        +          
Sbjct: 1307 PPCQKQCENKCEHSKCKNRCGEPCVPCAEPCAWECRHYKCNKLCGEMCDRPRCDKPCPYK 1366

Query: 211  GLSSDSKKPLEQEIKNDKI---------ALILGAEGK-GLRPKTQETATSMAHL 254
                     L  E    K          A++ G E + G R    E    +  +
Sbjct: 1367 KKCKHPCIGLCGEKCPKKCRICDKDEVTAILFGNEDEQGARFIQLEDCPHIVEV 1420


>gi|221128781|ref|XP_002162375.1| PREDICTED: similar to conserved hypothetical protein [Hydra
           magnipapillata]
          Length = 965

 Score = 35.2 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 57/230 (24%), Gaps = 12/230 (5%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I +K+ E I   +  H    R+ H   K+ +    K +   + +       H V    
Sbjct: 62  EVIKRKEHEVIK--RKEHEVIKRKEHEVIKRKEHEVIKRKEHEEIKRN----EHEVI--- 112

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
               R   +++  K        +  +      + V  + + + + +              
Sbjct: 113 ---KRNEHEVIKRKEHEVIKRKEHEVVKRKEHEVVKRKKVAEPIIEIVKPSNEFEIIMDD 169

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                     +      D      NI    +          I   R+  S      K+ +
Sbjct: 170 EFYFCANCSQNSGYYTKDSSQTDPNIKFNFKKRFDEKVLVWIAISRFGHSSPYFAVKNCA 229

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
              +      I+              + +   + ++    +        L
Sbjct: 230 LDTKTYSKECITKRLHPFINSKHQNIKILFWPNGARCHYAKHTLETYNTL 279


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.120    0.326 

Lambda     K      H
   0.267   0.0368    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,993,664,733
Number of Sequences: 14124377
Number of extensions: 99414482
Number of successful extensions: 358249
Number of sequences better than 10.0: 8886
Number of HSP's better than 10.0 without gapping: 8485
Number of HSP's successfully gapped in prelim test: 401
Number of HSP's that attempted gapping in prelim test: 339816
Number of HSP's gapped (non-prelim): 11322
length of query: 282
length of database: 4,842,793,630
effective HSP length: 137
effective length of query: 145
effective length of database: 2,907,753,981
effective search space: 421624327245
effective search space used: 421624327245
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 80 (35.6 bits)